Citrus Sinensis ID: 008887
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 550 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WUC5 | 566 | ALBINO3-like protein 3, m | yes | no | 0.776 | 0.754 | 0.545 | 1e-132 | |
| Q8L718 | 525 | ALBINO3-like protein 2, c | no | no | 0.827 | 0.866 | 0.529 | 1e-126 | |
| Q42191 | 429 | Mitochondrial inner membr | no | no | 0.412 | 0.529 | 0.284 | 7e-19 | |
| Q3SYV3 | 441 | Mitochondrial inner membr | yes | no | 0.441 | 0.551 | 0.266 | 4e-16 | |
| Q15070 | 435 | Mitochondrial inner membr | yes | no | 0.418 | 0.528 | 0.261 | 1e-15 | |
| Q8BGA9 | 433 | Mitochondrial inner membr | yes | no | 0.452 | 0.575 | 0.261 | 3e-15 | |
| O14300 | 374 | Mitochondrial inner membr | yes | no | 0.42 | 0.617 | 0.271 | 2e-14 | |
| Q9SKD3 | 431 | Mitochondrial inner membr | no | no | 0.42 | 0.535 | 0.281 | 2e-14 | |
| O43092 | 409 | Mitochondrial inner membr | no | no | 0.421 | 0.567 | 0.25 | 3e-12 | |
| O13375 | 371 | Mitochondrial inner membr | N/A | no | 0.381 | 0.566 | 0.234 | 3e-08 |
| >sp|Q0WUC5|ALB33_ARATH ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/431 (54%), Positives = 306/431 (70%), Gaps = 4/431 (0%)
Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
+IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LP +PP
Sbjct: 123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182
Query: 167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
SG+ +DQ+ LFR+E++ GCPS LW A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct: 183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242
Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K + LAK YK++LNL
Sbjct: 243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTE-LAKAYKTFLNL 301
Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEE 345
+T L+FL + +PQGSL+YW TN SFSI QQ L HP LGL + V A P
Sbjct: 302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361
Query: 346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404
+ E L P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+LAL K+P+ +
Sbjct: 362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLRLALEKDPEYLQ 421
Query: 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464
A+I++GQ QK EA + LE A SKL L PTE E +DLLIVASQW+GV+ IRQ K
Sbjct: 422 AMIILGQALYQKDQFAEAAKCLEQAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQGK 480
Query: 465 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524
EGI HLER+ N+KEP++PKSKAHY D LV+ +SA+ N GR EA KYLR A++P +
Sbjct: 481 TSEGITHLERVANMKEPDDPKSKAHYLDALVLYSSAIFNEGRREEAAKYLRRVVAYDPSF 540
Query: 525 NELLEQLENND 535
+ELL+Q E +D
Sbjct: 541 SELLKQCEEDD 551
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Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L718|ALB32_ARATH ALBINO3-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=ALB3L2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/459 (52%), Positives = 330/459 (71%), Gaps = 4/459 (0%)
Query: 93 ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIA 152
E I ++SSLPV A++ FL+ +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+
Sbjct: 69 EIIPTDDSSLPVLAVVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTIS 128
Query: 153 ELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIR 212
ELLP+LP P P + K +DQ S F +E RA GCPS LWF ++Q+PCF + + SIR
Sbjct: 129 ELLPKLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIR 188
Query: 213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
+MSLDGHPGFD GG+ WFQNL++ P G G +FP+L+A HY N+Q+SF S++ + GL
Sbjct: 189 KMSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGL 248
Query: 273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
GLL +YYK YL ++++PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP LGL
Sbjct: 249 TGLLMRYYKLYLEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL 308
Query: 333 DK-VVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPL 391
+ P E +++ ++S +K+ +S++ LTP+EL++LSV+ LSKGDKE I L
Sbjct: 309 SQGATPGMGHSMEISESVIKYVDSDSKEQTLSLQTLTPEELLSLSVQVLSKGDKETSIQL 368
Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
L+LAL K+P + L+LMGQ LQK L EA EYLE AISKL L P++ E ++LL++A
Sbjct: 369 LRLALEKDPGYVRGLVLMGQALLQKTQLSEATEYLELAISKL-LDEDPSDAEDVELLMLA 427
Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511
SQW+G A ++Q K + GI HLER+ L+EP +PKSK HY++ L++L+SAL G++ EA
Sbjct: 428 SQWAGAAYVQQGKLKSGIIHLERVAKLREPGDPKSKEHYFEALLLLSSALYKEGQSDEAA 487
Query: 512 KYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY 550
K LR+ HNP Y LLEQ E+ + E VSDL SRR+D+
Sbjct: 488 KILRVVVDHNPAYKPLLEQCEDEN-ELVSDL-VSRRKDH 524
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Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q42191|OXA1_ARATH Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 19/246 (7%)
Query: 94 SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
++A +S P+ AL +D H FTGF WW IV +T+ +R + +PL++ Q+K ++A
Sbjct: 124 TLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIKQMKDTTKLAL 183
Query: 154 LLPRLPPPFPPPLSGKRFVDQISLFRREKRAA------GCPSLLWFIASFAIQVPCFLVG 207
+ PRL + K +D +++ +K+ G F IQ P F+
Sbjct: 184 MRPRL-ESIREEMQNKG-MDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMF-IQGPLFICF 240
Query: 208 VTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLG 267
+IR M+ + P F GG WF +LT P + I PV+ V+ + + G
Sbjct: 241 FLAIRNMA-EKVPSFQTGGALWFTDLTT-PDSLY--ILPVITGLTFLITVECN---AQEG 293
Query: 268 KENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT 327
E + K L+T+P + PQ YW+T++ FS++ L +K P +
Sbjct: 294 MEGNPMAGTVKTVCRVFALLTVP---MTMSFPQAIFCYWITSNLFSLMYGLVIKRPQVKK 350
Query: 328 MLGLPD 333
ML +PD
Sbjct: 351 MLRIPD 356
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Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for activity and assembly of cytochrome c oxidase. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3SYV3|OXA1L_BOVIN Mitochondrial inner membrane protein OXA1L OS=Bos taurus GN=OXA1L PE=2 SV=1 | Back alignment and function description |
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Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 23/266 (8%)
Query: 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
G S PV + + L+ H G PWW I + TV R + PLIV ++ +I LP
Sbjct: 115 GLGSYTPVGLIQNLLEFMHVNLGLPWWGAIAACTVLARCLVFPLIVKGQREAAKIHNHLP 174
Query: 157 RLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFA------IQVPCFLVGVTS 210
+ F + + + F R I F Q P F+ +
Sbjct: 175 EIQK-FSARIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFRPLILPLTQAPIFISFFIA 233
Query: 211 IRRMSLDGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKE 269
+R M+ P GG+WWFQ+LT P VL + M +G LG E
Sbjct: 234 LREMANLPVPSLQTGGLWWFQDLTLSDPIYVLPLVVTATM-----------WGVLELGAE 282
Query: 270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329
G+ ++ ++++ LM L + + + P +YW++++ FS+ Q L+ PA RT+L
Sbjct: 283 TGMQSSDLQWMRNFIRLMPLAVLPITIHFPTAVFMYWLSSNMFSLGQVACLRIPAVRTVL 342
Query: 330 GLPDKVVPAAARKPEEIDTLETTLES 355
+P +VV P+++ E L+S
Sbjct: 343 KIPQRVV----HDPDKLAPREGFLKS 364
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Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria. Bos taurus (taxid: 9913) |
| >sp|Q15070|OXA1L_HUMAN Mitochondrial inner membrane protein OXA1L OS=Homo sapiens GN=OXA1L PE=1 SV=3 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 45/275 (16%)
Query: 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
G S PV + + L+ H G PWW I + TV R + PLIV ++ RI LP
Sbjct: 115 GLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFPLIVTGQREAARIHNHLP 174
Query: 157 RLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAI----------------- 199
+ ++F +I RE + AG + ++ AS +
Sbjct: 175 EI----------QKFSSRI----REAKLAG-DHIEYYKASSEMALYQKKHGIKLYKPLIL 219
Query: 200 ---QVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTN 256
Q P F+ ++R M+ P GG+WWFQ+LT P+ + L T
Sbjct: 220 PVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLAVTA 271
Query: 257 VQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQ 316
+ LG E G+ ++ ++ + +M L + + P +YW++++ FS+VQ
Sbjct: 272 TM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFSLVQ 329
Query: 317 QLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
L+ PA RT+L +P +VV + P LE+
Sbjct: 330 VSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLES 364
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Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria. Homo sapiens (taxid: 9606) |
| >sp|Q8BGA9|OXA1L_MOUSE Mitochondrial inner membrane protein OXA1L OS=Mus musculus GN=Oxa1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 23/272 (8%)
Query: 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
G S PV + + L+ H G PWW I + TV R + PLIV ++ +I +P
Sbjct: 110 GLGSYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHMP 169
Query: 157 RLPPPFPPPLSGKRFVDQISLFR------REKRAAGCPSLLWFIASFAIQVPCFLVGVTS 210
+ K DQ ++ R ++ L I Q P F+ +
Sbjct: 170 EMQKFSARIREAKLAGDQAEFYKATIEMTRYQKKHDIKLLRPLILPLT-QAPVFISFFIA 228
Query: 211 IRRMSLDGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKE 269
+R M+ P GG+WWFQ+LT P VL P+++ + ++L G E
Sbjct: 229 LREMANLPVPSLQTGGLWWFQDLTVSDPIYVL----PLVVTATMWCVLEL-------GAE 277
Query: 270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329
G+ ++ ++ + +M L + + + P +YW++++ FS+ Q L+ PA RT+L
Sbjct: 278 TGVQSNDLQFMRNIIRVMPLVVLPVTIHFPSAVFMYWLSSNVFSLCQVACLRIPAVRTVL 337
Query: 330 GLPDKVVPAAARKPEEIDTLETTLESPAKQLK 361
+P +VV P+++ E L+S K K
Sbjct: 338 KIPQRVV----HDPDKLPPREGFLKSFKKGWK 365
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Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria. Mus musculus (taxid: 10090) |
| >sp|O14300|OXA11_SCHPO Mitochondrial inner membrane protein oxa1-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa101 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 113 TYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFV 172
T + + G PWW I+ +T+ +R+AL P+++ + +++ + P + + K
Sbjct: 77 TINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMKKELEAIKTAKLDN 136
Query: 173 DQISLFRREKRAAGCPSLLWFIASFAI------QVPCFLVGVTSIRRMSLDGHPGFDCGG 226
DQ++L + G L + FAI Q F +IR+MS GF GG
Sbjct: 137 DQLALNQHSIALRGI-YLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMSRLSVDGFTTGG 195
Query: 227 IWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFG--ASSLGKENGLLGLLAKYYKSY 283
+ WF++L+ P+ +L P++ AGL ++ +Q++ AS++G ++++
Sbjct: 196 LAWFKDLSIPDPYCIL----PIINAGLMFSGMQMNRANTASTIGNSTN--------WRTF 243
Query: 284 LNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKP 343
L L L +P +YW+ +S F+IVQ LK+P R+ LG +P+ K
Sbjct: 244 FFLCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQGYILKNPVVRSKLGFAP--LPSIIEKQ 301
Query: 344 EEIDTLETTLESPAKQLK 361
TL T +P K LK
Sbjct: 302 PSGFTLIT---NPIKSLK 316
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Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase. Not essential for viability, while oxa102 is essential. When both genes are deleted the cell is non-viable, suggesting that oxa101 act as a back-up for oxa102. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q9SKD3|OXA1L_ARATH Mitochondrial inner membrane protein OXA1-like OS=Arabidopsis thaliana GN=OXA1L PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 28/259 (10%)
Query: 94 SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
+IA +S+ PV AL +D H FTG WW I +TV +R +P+++ QLK ++
Sbjct: 127 AIAAADSAFPVAALQHLIDAVHSFTGLNWWASIALTTVLIRGVTIPILLNQLKATYKLNV 186
Query: 154 LLPRL---------PPPFPPPLS-GKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPC 203
L P+L P ++ G+R + LF+ P + IQ P
Sbjct: 187 LRPQLEELRQEMSTKAQDPEAMAEGQRRMQL--LFKEHGVTPFTP-----LKGLIIQGPI 239
Query: 204 FLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGA 263
F+ +IR M+ + P F GG WF +LT I P+L A V+ +
Sbjct: 240 FISFFFAIRNMA-EKVPSFKTGGTLWFTDLTTTDTTY---ILPLLTAVTFLIMVESNMQE 295
Query: 264 SSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
G N + G + K+ + + +++P+ I + YW+T++ F++V L L+ P
Sbjct: 296 GLEG--NPVAGTMKKFSR-IIAFLSIPVLI---GIEKALFCYWLTSNLFTLVYGLTLRRP 349
Query: 324 ASRTMLGLPDKVVPAAARK 342
R +L LPD VV ++ R+
Sbjct: 350 DVRKLLNLPD-VVNSSTRQ 367
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Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. May participate in the activity and assembly of cytochrome oxidase. Arabidopsis thaliana (taxid: 3702) |
| >sp|O43092|OXA12_SCHPO Mitochondrial inner membrane protein oxa1-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa102 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 52/284 (18%)
Query: 88 SERVI--------ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
SE+V+ S+ S LP L + L+T H ++G PWW I + VA+RIA+ P
Sbjct: 73 SEKVVYTPSLPLSSSVLASFSFLPHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFP 132
Query: 140 LIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLW------- 192
+++ +K ++A + P++ + +S+ + K A G L+
Sbjct: 133 IMLKMMKTSAKLAIINPKV-------------AEHMSVLSKAK-AEGNSELMMQATTQIQ 178
Query: 193 ------------FIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGV 240
+++ Q F+ +++ M+ GF GG WW +L++ P +
Sbjct: 179 NLYKVNNVNPLNLLSAPVFQGILFISFFYALKTMAGVPVEGFTDGGFWWVNDLSQ-PDPL 237
Query: 241 LGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQ 300
IFPV L N++L G+ + + + + K+++ +L L + PLF + + P
Sbjct: 238 --HIFPVANGLLMLLNIEL--GSETGSNKVAMSPSMKKFFR-FLCLAS-PLFTMNF--PM 289
Query: 301 GSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPE 344
+YW ++ FS+ Q L+ R LGLP+ VP+A P
Sbjct: 290 AIFMYWFPSNVFSVFQGAFLRSSTIRHKLGLPE--VPSAMPVPN 331
|
Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase. It is essential for viability while oxa101 is not. When both are deleted the cell is non-viable, suggesting that oxa101 act as a back-up for oxa102. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O13375|OXA1_SACSE Mitochondrial inner membrane protein OXA1 OS=Saccharomyces servazzii GN=OXA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 102/230 (44%), Gaps = 20/230 (8%)
Query: 111 LDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR 170
L+ H +TG PWW I + T+ +R+ + P+ V I + + + P++ ++
Sbjct: 93 LEYVHVYTGLPWWGTICTVTILVRLLMFPIYVKSSDTIAKNSRIKPQMDKVTKELMATTD 152
Query: 171 FVD--QISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW 228
+ +I++ RR+ + W A +Q+P + ++R M+ GF GI
Sbjct: 153 LAEGQKIAVRRRKLLSENGIKNRWLAAPM-LQLPIAIGFFNALRSMANFPVDGFANQGIL 211
Query: 229 WFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENG---LLGLLAKYYKSYLN 285
WF +LT P L GL + + S LG E G G + +++ L
Sbjct: 212 WFHDLTLSD--------PYL--GLQFITAAVLMSFSRLGGETGAQQFSGPMKRFF-IILP 260
Query: 286 LMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKV 335
L+++P + ++Y+ N +FS++Q L L++ R L + + V
Sbjct: 261 LVSIP---ATMNLSTSVVLYFAINGTFSVLQTLVLRNKWFRKKLNIAEVV 307
|
Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase. Saccharomyces servazzii (taxid: 27293) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 550 | ||||||
| 449442253 | 573 | PREDICTED: ALBINO3-like protein 3, mitoc | 0.938 | 0.900 | 0.583 | 1e-163 | |
| 255543108 | 548 | cytochrome oxidase biogenesis protein, p | 0.98 | 0.983 | 0.574 | 1e-163 | |
| 225431027 | 572 | PREDICTED: ALBINO3-like protein 2, chlor | 0.825 | 0.793 | 0.604 | 1e-156 | |
| 297818908 | 540 | binding protein [Arabidopsis lyrata subs | 0.963 | 0.981 | 0.475 | 1e-132 | |
| 145339114 | 566 | membrane insertion protein and OxaA/YidC | 0.776 | 0.754 | 0.545 | 1e-130 | |
| 449477882 | 366 | PREDICTED: ALBINO3-like protein 2, chlor | 0.658 | 0.989 | 0.638 | 1e-128 | |
| 224103345 | 499 | inner membrane protein [Populus trichoca | 0.892 | 0.983 | 0.516 | 1e-128 | |
| 357507673 | 595 | ALBINO3-like protein [Medicago truncatul | 0.923 | 0.853 | 0.436 | 1e-126 | |
| 42562960 | 525 | ALBINO3-like protein 2 [Arabidopsis thal | 0.827 | 0.866 | 0.529 | 1e-124 | |
| 297837823 | 524 | hypothetical protein ARALYDRAFT_475515 [ | 0.82 | 0.860 | 0.527 | 1e-121 |
| >gi|449442253|ref|XP_004138896.1| PREDICTED: ALBINO3-like protein 3, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 309/530 (58%), Positives = 385/530 (72%), Gaps = 14/530 (2%)
Query: 28 HLFNAPIPTLTQ-TQTPQRAFYFRPHV-----HLYHSGSADDSSVGGDGVGDRYSEVPIP 81
H F+ I +L+ T R+F+ R + + H G + S + D G +
Sbjct: 51 HRFDPHISSLSAFTAFSSRSFWTRSNDDSEFDRIAHYG-VESSHLSNDDTGIQ------D 103
Query: 82 VETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLI 141
+E + E VI + A E S LP++ L S LD +H +TG PWW +I SST+ALR LLP++
Sbjct: 104 LELGGVVEEVIGATAVENSILPIQQLTSILDGFHQYTGMPWWAVIASSTLALRFTLLPIL 163
Query: 142 VLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQV 201
++QL K++RI EL P+LPPP PPPLSG+ ++DQISLFR+E++A GCPS LWF A F IQV
Sbjct: 164 IVQLNKLKRIGELFPKLPPPLPPPLSGRSYIDQISLFRKERKAIGCPSFLWFAAYFFIQV 223
Query: 202 PCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSF 261
PCFL+ + +IR+MSLD +PGFD GG WFQNLTEYPHGV G IFP L+A LH+ NVQLSF
Sbjct: 224 PCFLLWMVTIRKMSLDHYPGFDYGGALWFQNLTEYPHGVFGPIFPFLIASLHFINVQLSF 283
Query: 262 GASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK 321
SSL KE G++G+LAKYYK YLNL+T+PLFF+GY IPQGSLVYWVTNSSF+ +QQL L+
Sbjct: 284 RKSSLEKETGIIGILAKYYKLYLNLLTVPLFFIGYCIPQGSLVYWVTNSSFTAIQQLTLQ 343
Query: 322 HPASRTMLGLPDKVVPAAARKPEEIDT-LETTLESPAKQLKISVENLTPKELIALSVKFL 380
HPA R+ LGLP + P E + + LE+ K KISVE L+PKEL+ALSV+ L
Sbjct: 344 HPAVRSKLGLPSRDAPVGTTTLRETNNPGKIPLETTTKWKKISVEKLSPKELLALSVQLL 403
Query: 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440
SKG KE+ IPLL+ ALNKEP+ + AL++MGQT LQ EA YLE AISKLFL+GHPT
Sbjct: 404 SKGQKEKAIPLLRQALNKEPEYVRALVVMGQTLLQNAQPAEATVYLERAISKLFLSGHPT 463
Query: 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 500
E E +DLLI+ASQW+GVA IRQ K EGIAHLER+ NLKEPEEPKSKAHYYDGLV+LASA
Sbjct: 464 EVEGVDLLILASQWAGVAFIRQGKMVEGIAHLERVANLKEPEEPKSKAHYYDGLVLLASA 523
Query: 501 LCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY 550
L N GR AEA KYL+ A A+NP Y E L+Q E+++++ V DL SSRR DY
Sbjct: 524 LYNEGRKAEATKYLKSAVAYNPAYKEYLDQCEDDNDKLVGDLVSSRRGDY 573
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543108|ref|XP_002512617.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis] gi|223548578|gb|EEF50069.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 321/559 (57%), Positives = 403/559 (72%), Gaps = 20/559 (3%)
Query: 1 MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYH--- 57
MA +LL +RR S PL L N P L +Q+P + F + +H
Sbjct: 1 MAVPRLLFSHIRR----SRPLCSLSYWRLSN---PNLNCSQSPTPSHKFANSLAAFHFLD 53
Query: 58 --SGSADDSSVGGDGVGDRYSE----VPIPVETVNLSERVIESIAGEESSLPVRALISFL 111
S S+ + G D + + +E V +ETV + + EES LPVR L+S L
Sbjct: 54 SRSFSSPSNHDGSDFLANSAAEPSSIVSDVIETVG---NITTNGGNEESILPVRVLVSVL 110
Query: 112 DTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRF 171
D +HD +G PWW +I S+TVA+R+ L PL+VLQL K+++I+EL P+LPPPFPPPLSGK F
Sbjct: 111 DEFHDLSGLPWWLVIASATVAMRVTLFPLLVLQLHKLKKISELFPKLPPPFPPPLSGKSF 170
Query: 172 VDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQ 231
VDQISLF +E+RA GCPS LWF+A + QVPCFL+ +TSIRRMSLD HPGFDCGG WFQ
Sbjct: 171 VDQISLFHKERRALGCPSYLWFLAYVSAQVPCFLLWMTSIRRMSLDHHPGFDCGGTLWFQ 230
Query: 232 NLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPL 291
NLTEYPHG+ G IFP+L+A LHY N+QL+F S+ K GLL LLAKYYK YL+L+TLPL
Sbjct: 231 NLTEYPHGIAGPIFPLLIACLHYINIQLAFEKFSVQKTTGLLSLLAKYYKLYLDLLTLPL 290
Query: 292 FFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
FF+GY IPQGSLVYWVTNSS S++QQ++LKHPA R LGLP K PAA+ EE+ + +
Sbjct: 291 FFIGYCIPQGSLVYWVTNSSLSVIQQMSLKHPAVRAKLGLPAKDAPAASADSEEMGSPQA 350
Query: 352 TLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQ 411
+L++P+K K+ VENL PK+L+A+SV+ LS +ER IPLLQLAL K+P+ I AL++MGQ
Sbjct: 351 SLDAPSKNGKVPVENLNPKQLLAISVQLLSNQHRERAIPLLQLALQKDPNYIGALVVMGQ 410
Query: 412 TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAH 471
T LQK + EA ++LE AISKLFLAG+PTE + +DLLI+ASQW+GVACIRQ + EG+AH
Sbjct: 411 TLLQKEMYAEARDHLERAISKLFLAGNPTEVKDVDLLILASQWAGVACIRQGENAEGVAH 470
Query: 472 LERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531
ER+ NL+EPE+PK K HY+D L+ LASAL N GR AEA YLRLA A NP + ELLEQ
Sbjct: 471 FERVANLEEPEDPKCKVHYFDTLIFLASALYNEGRKAEAANYLRLAVAFNPAFKELLEQC 530
Query: 532 ENNDEEFVSDLSSSRRRDY 550
E NDEEF SDL +SRRRDY
Sbjct: 531 E-NDEEFGSDLVNSRRRDY 548
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431027|ref|XP_002273357.1| PREDICTED: ALBINO3-like protein 2, chloroplastic [Vitis vinifera] gi|297735304|emb|CBI17666.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 294/486 (60%), Positives = 365/486 (75%), Gaps = 32/486 (6%)
Query: 89 ERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKI 148
E IESI PVR L+S LD YHD TG+PWW II SST+ALRIAL P++VLQLKK+
Sbjct: 95 ESAIESIP------PVRFLVSLLDGYHDVTGWPWWIIIASSTLALRIALFPILVLQLKKM 148
Query: 149 QRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGV 208
+RIAELLP+LPPP PPPLSG+ + DQISLFR+EKRA GCPS LWF+AS + QVPCF++ +
Sbjct: 149 KRIAELLPKLPPPLPPPLSGRSYFDQISLFRKEKRAIGCPSFLWFLASLSTQVPCFILWM 208
Query: 209 TSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGK 268
SIR MSLD HPGFD GG WFQNLTE+P+GVLG IFP+L++GLH+ NVQ+SF SS+G+
Sbjct: 209 MSIRWMSLDHHPGFDSGGALWFQNLTEFPNGVLGPIFPILISGLHFINVQISFSTSSVGQ 268
Query: 269 ENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328
GLLGLLAKYYK YL ++T+P+FF G+YIPQGSLVYWVTNSS S +QQL ++HP R
Sbjct: 269 VPGLLGLLAKYYKFYLEILTVPIFFTGFYIPQGSLVYWVTNSSLSAIQQLTIRHPTVRAK 328
Query: 329 LGLPDKVVPAAARK--------------------PEEIDTLE----TTLESPAKQLKISV 364
LGLPDK P AA K PE + E ++ KQ +I +
Sbjct: 329 LGLPDKQAPNAAAKEMHTPGEGSLGPPTKQQYISPESVSPQELPGIKSMYPRRKQHQIPI 388
Query: 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424
E+L+P++LIALSV+ LSKGDK+ IP +++AL+K+P+ + AL++MGQT LQK +EEA +
Sbjct: 389 ESLSPRDLIALSVQILSKGDKDGAIPFIRMALDKDPNYVRALVVMGQTLLQKEQVEEASD 448
Query: 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484
YLE A++KLFL GHPTE E +DL+I+ASQW+G AC+RQ K EG+ HLERI NLKEP+EP
Sbjct: 449 YLERAVTKLFLIGHPTEDE-VDLMILASQWAGAACVRQGKTAEGLVHLERIANLKEPDEP 507
Query: 485 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSDLSS 544
KSKAHY+DGL++LAS L GRNAEA K+LR AAA+NP Y E LE+ E D FV+DL S
Sbjct: 508 KSKAHYFDGLLLLASTLYREGRNAEAAKHLRKAAAYNPAYKEYLEECERED-GFVNDLVS 566
Query: 545 SRRRDY 550
SRR DY
Sbjct: 567 SRRGDY 572
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297818908|ref|XP_002877337.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323175|gb|EFH53596.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 261/549 (47%), Positives = 351/549 (63%), Gaps = 19/549 (3%)
Query: 1 MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGS 60
MA ++LL LRR + LS H+ P++T R F P + +
Sbjct: 1 MAFRRVLLSNLRRSHHTCSSLSPH---HISATTHPSITLGLFQSRFFSTPPDLDSELTRL 57
Query: 61 ADDS--SVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFT 118
DDS G +G G +S+ LS+ +I + L + +IS LD+YHD T
Sbjct: 58 RDDSVTGFGTNGHGLEFSD---------LSQDLIGAGVSNYDYL-TQPVISLLDSYHDLT 107
Query: 119 GFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLF 178
G PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LPP +PP SG+ +DQ+ LF
Sbjct: 108 GLPWWVVIATSTVAFRTALLPILILQRKQTRRISQFLPKLPPFWPPEGSGRSVIDQLKLF 167
Query: 179 RREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH 238
R+E+R +GCPS LW A F+IQ+ CF + +TSIRRMSLD HPGFD GG WFQNLTE P+
Sbjct: 168 RKERRDSGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGGALWFQNLTEVPN 227
Query: 239 GVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYI 298
G+ G +FP L+AGLHYTN Q++F ASS+ K + LAK +K +LN +T L+ L + +
Sbjct: 228 GLYGPLFPFLIAGLHYTNTQITFTASSVHKVDK-FAELAKTFKMFLNFLTFALYGLSFQM 286
Query: 299 PQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEEIDTLETTL-ESP 356
PQGSL+YW TN SFSI QQ L HP LGL + V A P + E L +S
Sbjct: 287 PQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPILTNINEAKLTDSS 346
Query: 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK 416
+K IS NLTPKEL+ALS K+LS G+K++ IPLL+LAL K+P+ + A++++GQ QK
Sbjct: 347 SKGRLISGHNLTPKELVALSAKYLSGGNKDKSIPLLRLALEKDPEYLQAMVILGQALYQK 406
Query: 417 GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476
EA +YLE A SKL L PTE E +DLLIVASQW+GV+ IRQ K EGI HLER+
Sbjct: 407 DQFAEAAKYLELAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQGKTSEGITHLERVA 465
Query: 477 NLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDE 536
N+KEP++PKSKAHY D LV+ +SA+ N GR EA KYLR A++P ++ELL+Q E ++
Sbjct: 466 NMKEPDDPKSKAHYLDALVLYSSAIFNEGRREEAAKYLRRVVAYDPSFSELLKQCEEDNN 525
Query: 537 EFVSDLSSS 545
+ SS+
Sbjct: 526 TIPTSSSSN 534
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145339114|ref|NP_190023.2| membrane insertion protein and OxaA/YidC with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|122242629|sp|Q0WUC5.1|ALB33_ARATH RecName: Full=ALBINO3-like protein 3, mitochondrial; Flags: Precursor gi|110742724|dbj|BAE99273.1| hypothetical protein [Arabidopsis thaliana] gi|332644376|gb|AEE77897.1| membrane insertion protein and OxaA/YidC with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/431 (54%), Positives = 306/431 (70%), Gaps = 4/431 (0%)
Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
+IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LP +PP
Sbjct: 123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182
Query: 167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
SG+ +DQ+ LFR+E++ GCPS LW A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct: 183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242
Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K + LAK YK++LNL
Sbjct: 243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTE-LAKAYKTFLNL 301
Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEE 345
+T L+FL + +PQGSL+YW TN SFSI QQ L HP LGL + V A P
Sbjct: 302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361
Query: 346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404
+ E L P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+LAL K+P+ +
Sbjct: 362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLRLALEKDPEYLQ 421
Query: 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464
A+I++GQ QK EA + LE A SKL L PTE E +DLLIVASQW+GV+ IRQ K
Sbjct: 422 AMIILGQALYQKDQFAEAAKCLEQAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQGK 480
Query: 465 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524
EGI HLER+ N+KEP++PKSKAHY D LV+ +SA+ N GR EA KYLR A++P +
Sbjct: 481 TSEGITHLERVANMKEPDDPKSKAHYLDALVLYSSAIFNEGRREEAAKYLRRVVAYDPSF 540
Query: 525 NELLEQLENND 535
+ELL+Q E +D
Sbjct: 541 SELLKQCEEDD 551
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477882|ref|XP_004155151.1| PREDICTED: ALBINO3-like protein 2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/365 (63%), Positives = 280/365 (76%), Gaps = 3/365 (0%)
Query: 187 CPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFP 246
C L++F +QVPCFL+ + +IR+MSLD +PGFD GG WFQNLTEYPHGV G IFP
Sbjct: 4 CLFLVYF--QMYMQVPCFLLWMVTIRKMSLDHYPGFDYGGALWFQNLTEYPHGVFGPIFP 61
Query: 247 VLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYW 306
L+A LH+ NVQLSF SSL KE G++G+LAKYYK YLNL+T+PLFF+GY IPQGSLVYW
Sbjct: 62 FLIASLHFINVQLSFRKSSLEKETGIIGILAKYYKLYLNLLTVPLFFIGYCIPQGSLVYW 121
Query: 307 VTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDT-LETTLESPAKQLKISVE 365
VTNSSF+ +QQL L+HPA R+ LGLP + P E + + LE+ K KISVE
Sbjct: 122 VTNSSFTAIQQLTLQHPAVRSKLGLPSRDAPVGTTTLRETNNPGKIPLETTTKWKKISVE 181
Query: 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEY 425
L+PKEL+ALSV+ LSKG KE+ IPLL+ ALNKEP+ + AL++MGQT LQ EA Y
Sbjct: 182 KLSPKELLALSVQLLSKGQKEKAIPLLRQALNKEPEYVRALVVMGQTLLQNAQPAEATVY 241
Query: 426 LECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485
LE AISKLFL+GHPTE E +DLLI+ASQW+GVA IRQ K EGIAHLER+ NLKEPEEPK
Sbjct: 242 LERAISKLFLSGHPTEVEGVDLLILASQWAGVAFIRQGKMVEGIAHLERVANLKEPEEPK 301
Query: 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSS 545
SKAHYYDGLV+LASAL N GR AEA KYL+ A A+NP Y E L+Q E+++++ V DL SS
Sbjct: 302 SKAHYYDGLVLLASALYNEGRKAEATKYLKSAVAYNPAYKEYLDQCEDDNDKLVGDLVSS 361
Query: 546 RRRDY 550
RR DY
Sbjct: 362 RRGDY 366
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103345|ref|XP_002313020.1| inner membrane protein [Populus trichocarpa] gi|222849428|gb|EEE86975.1| inner membrane protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 277/536 (51%), Positives = 340/536 (63%), Gaps = 45/536 (8%)
Query: 1 MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGS 60
MAT LLL LRR S LSR PL + P P + T P A R + ++ S
Sbjct: 1 MATRSLLLSTLRRSRPIS-TLSR-PLTNSSPGPNPN-SLTSQPSNAISSRNSLASFNFPS 57
Query: 61 ADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGF 120
S + E PV T + V+ I LPV ++I LD+YHD TG
Sbjct: 58 CRSLSTRTASESINFEEFADPVST-ETEDGVVNGI------LPVDSMIWLLDSYHDLTGL 110
Query: 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRR 180
PWW II SST+A+R+ L PL VLQ+ KI++I+ +LPP FPPPLSG+ +++QISLFR
Sbjct: 111 PWWIIIASSTLAMRLTLFPLHVLQMHKIKKISRSFSKLPPLFPPPLSGRSYIEQISLFRN 170
Query: 181 EKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGV 240
E+RA GCPS LWF+A ++Q+PCFL+ +TSIRRM LD HPGFDCGG WFQNLTE PHGV
Sbjct: 171 ERRAIGCPSYLWFLAFLSVQIPCFLLWMTSIRRMCLDNHPGFDCGGALWFQNLTELPHGV 230
Query: 241 LGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQ 300
LG IFP L+AGLH NV YY+ YLN M LPLFF+GY IPQ
Sbjct: 231 LGPIFPFLIAGLHGVNVH--------------------YYRKYLNFMMLPLFFIGYCIPQ 270
Query: 301 GSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQL 360
GSLVYWVTNSS + +QQ++LK P R LGL DK P A E+ E
Sbjct: 271 GSLVYWVTNSSLTAIQQVSLKLPVVRAKLGLLDKDFPKAPALSAEMVAHELR-------- 322
Query: 361 KISVENLTPKEL------IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL 414
K+S ENL+P EL + LSVK LS G + R IPLLQ+AL K+ ++ ALI+MGQ +L
Sbjct: 323 KVSPENLSPHELLVVSGAVQLSVKLLSSGHRARAIPLLQMALEKDSGHVKALIVMGQARL 382
Query: 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
Q+GL EA ++LE AIS L L GHPT E +D LI+ASQW+GVACIRQ K EGI HLER
Sbjct: 383 QEGLHAEATDHLERAISNLILTGHPTA-EDVDHLILASQWAGVACIRQGKNAEGIMHLER 441
Query: 475 IGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530
I +L+EPE+PKSKAHY+DGL++LASAL RNAEA KYLRL A++P E L+Q
Sbjct: 442 ITSLEEPEDPKSKAHYFDGLLLLASALSKEDRNAEAVKYLRLVVAYDPSRKEFLDQ 497
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507673|ref|XP_003624125.1| ALBINO3-like protein [Medicago truncatula] gi|355499140|gb|AES80343.1| ALBINO3-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 258/591 (43%), Positives = 356/591 (60%), Gaps = 83/591 (14%)
Query: 21 LSRAPLCHLF--NAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEV 78
+SR P H F ++P PT AF H + +GS++D + D +G +
Sbjct: 22 MSRIPASHPFTPHSPTPTFLD------AF----HTRAFSTGSSNDE-LDTDSLG---LDS 67
Query: 79 PIPVETVNLSERVIESIAGEES--SLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIA 136
P+ E + + I AG E PVRA+IS L+++HD TGFPWW I+SST+ALR+
Sbjct: 68 PVHSEIL----KTIADSAGSEDIPVFPVRAVISLLESFHDLTGFPWWLTIISSTLALRLV 123
Query: 137 LLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIAS 196
LL ++ L K++RI+E +P+LPPPFPPP SGK ++ Q+ F +++A GCPS W +
Sbjct: 124 LLCPLIFTLHKLKRISEFVPKLPPPFPPPFSGKSYIRQMRFFEEKRKAVGCPSYAWPLLP 183
Query: 197 FAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTN 256
F +QVPCF V + SIRRMSLDGHPGFDCGG WFQNLTE+ HG G FP LMAGLHY
Sbjct: 184 FIVQVPCFFVWMFSIRRMSLDGHPGFDCGGALWFQNLTEFSHGYSGFTFPFLMAGLHYVI 243
Query: 257 VQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSL------------- 303
VQ++F + + + LL+KYYK YL+ +TLP+ F+G+ IPQG+
Sbjct: 244 VQVTFKKPMIEETQDIFDLLSKYYKRYLDFLTLPIAFIGFSIPQGTFLDYNVAQALKGHL 303
Query: 304 -------------------------VYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPA 338
+YW+TNSS ++VQ AL++PA+ LGL DK
Sbjct: 304 LKPNGPESIKSTSYPLSLSLTHGSQLYWITNSSLTLVQHFALRNPAALAKLGLLDKNRQI 363
Query: 339 AARK----------------------PEEIDTLETTLESPAKQLKISVENLTPKELIALS 376
AA K E I + L+SP K KI +EN++ EL L+
Sbjct: 364 AASKETDASKTPPLLGVQDNSTTAATKETISPEKNPLDSPEKWHKIPIENMSSVELTTLA 423
Query: 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436
V FL+ DK+ IPLL+LAL+K+P+ + AL+LMG+ L K + +EA++Y E AISKL LA
Sbjct: 424 VPFLNSSDKDSAIPLLKLALDKDPEYLRALVLMGRVLLLKQINDEAIQYFERAISKLSLA 483
Query: 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 496
G PT+PE D LI++SQW+G+A RQ K +E AH ER+ N++EPE+P SK +Y+DGL++
Sbjct: 484 GFPTDPEEFDFLILSSQWAGIAFERQGKKDEARAHFERVANMEEPEDPASKRYYFDGLLL 543
Query: 497 LASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSSRR 547
LAS+L + G+ AEA KYLRL A+NP Y + LEQ E + E+ SDL+ +RR
Sbjct: 544 LASSLHDSGQKAEAAKYLRLVVAYNPGYKKFLEQCEQH-EDIASDLAQTRR 593
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42562960|ref|NP_176688.3| ALBINO3-like protein 2 [Arabidopsis thaliana] gi|38372237|sp|Q8L718.2|ALB32_ARATH RecName: Full=ALBINO3-like protein 2, chloroplastic; Short=Ath5; Flags: Precursor gi|6227006|gb|AAF06042.1|AC009360_7 F16G16.8 [Arabidopsis thaliana] gi|332196206|gb|AEE34327.1| ALBINO3-like protein 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 243/459 (52%), Positives = 330/459 (71%), Gaps = 4/459 (0%)
Query: 93 ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIA 152
E I ++SSLPV A++ FL+ +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+
Sbjct: 69 EIIPTDDSSLPVLAVVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTIS 128
Query: 153 ELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIR 212
ELLP+LP P P + K +DQ S F +E RA GCPS LWF ++Q+PCF + + SIR
Sbjct: 129 ELLPKLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIR 188
Query: 213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
+MSLDGHPGFD GG+ WFQNL++ P G G +FP+L+A HY N+Q+SF S++ + GL
Sbjct: 189 KMSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGL 248
Query: 273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
GLL +YYK YL ++++PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP LGL
Sbjct: 249 TGLLMRYYKLYLEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL 308
Query: 333 DK-VVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPL 391
+ P E +++ ++S +K+ +S++ LTP+EL++LSV+ LSKGDKE I L
Sbjct: 309 SQGATPGMGHSMEISESVIKYVDSDSKEQTLSLQTLTPEELLSLSVQVLSKGDKETSIQL 368
Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
L+LAL K+P + L+LMGQ LQK L EA EYLE AISKL L P++ E ++LL++A
Sbjct: 369 LRLALEKDPGYVRGLVLMGQALLQKTQLSEATEYLELAISKL-LDEDPSDAEDVELLMLA 427
Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511
SQW+G A ++Q K + GI HLER+ L+EP +PKSK HY++ L++L+SAL G++ EA
Sbjct: 428 SQWAGAAYVQQGKLKSGIIHLERVAKLREPGDPKSKEHYFEALLLLSSALYKEGQSDEAA 487
Query: 512 KYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY 550
K LR+ HNP Y LLEQ E+ + E VSDL SRR+D+
Sbjct: 488 KILRVVVDHNPAYKPLLEQCEDEN-ELVSDL-VSRRKDH 524
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297837823|ref|XP_002886793.1| hypothetical protein ARALYDRAFT_475515 [Arabidopsis lyrata subsp. lyrata] gi|297332634|gb|EFH63052.1| hypothetical protein ARALYDRAFT_475515 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/455 (52%), Positives = 324/455 (71%), Gaps = 4/455 (0%)
Query: 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
++SSLPV ++ FLD +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+ELLP
Sbjct: 72 NDDSSLPVLFVVDFLDGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTISELLP 131
Query: 157 RLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSL 216
+LP P P + K +DQ S F +E RA GCPS LWF ++Q+PCF + + SIR+MSL
Sbjct: 132 QLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIRKMSL 191
Query: 217 DGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLL 276
DGHPGFD GG WFQNL++ P G G +FP+L+A HY N+Q+SF S++ + GL GLL
Sbjct: 192 DGHPGFDSGGALWFQNLSDLPVGSFGPVFPILIAAFHYINIQISFDTSTIRQTTGLTGLL 251
Query: 277 AKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLG-LPDKV 335
+YYK YL ++ +PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP LG L
Sbjct: 252 MRYYKLYLEILGVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPRVGAKLGLLTQGA 311
Query: 336 VPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLA 395
P+ E +++ ++S K+ +S++ LTP+EL++LSV+ LSK DKE I LL+LA
Sbjct: 312 SPSVEHSMEISESVIKYVDSDLKEHTLSLQTLTPEELLSLSVQVLSKDDKETSIQLLRLA 371
Query: 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455
L+K+P + L+LMGQ LQK L EA +YLE AISKL L P++ E ++LL++ASQW+
Sbjct: 372 LDKDPGYVRGLVLMGQALLQKTELSEATKYLELAISKL-LDEDPSDAEDVELLMLASQWA 430
Query: 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515
G A ++Q K + GI HLER+ LKEP +PKSK HY++ L++L+SAL G++ EA K LR
Sbjct: 431 GAAYVQQGKMKSGITHLERVAKLKEPGDPKSKEHYFEALLLLSSALYKEGQSDEAAKILR 490
Query: 516 LAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY 550
+ HNP Y LLEQ E+ + E VSDL SRR+D+
Sbjct: 491 VVVEHNPAYKPLLEQCEDEN-ELVSDL-VSRRKDH 523
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 550 | ||||||
| TAIR|locus:2014973 | 525 | AT1G65080 [Arabidopsis thalian | 0.827 | 0.866 | 0.501 | 6.9e-118 | |
| TAIR|locus:2100172 | 566 | AT3G44370 [Arabidopsis thalian | 0.756 | 0.734 | 0.530 | 2.2e-112 | |
| TAIR|locus:2174068 | 429 | OXA1 "homolog of yeast oxidase | 0.474 | 0.608 | 0.260 | 1.1e-17 | |
| ZFIN|ZDB-GENE-071004-49 | 469 | oxa1l "oxidase (cytochrome c) | 0.418 | 0.490 | 0.282 | 7.4e-17 | |
| TAIR|locus:2039134 | 431 | OXA1L "AT2G46470" [Arabidopsis | 0.461 | 0.589 | 0.269 | 3.4e-16 | |
| UNIPROTKB|E7EVY0 | 408 | OXA1L "Mitochondrial inner mem | 0.483 | 0.651 | 0.262 | 8.1e-16 | |
| RGD|1585024 | 433 | Oxa1l "oxidase (cytochrome c) | 0.570 | 0.725 | 0.228 | 1.4e-14 | |
| UNIPROTKB|Q15070 | 435 | OXA1L "Mitochondrial inner mem | 0.469 | 0.593 | 0.262 | 1.4e-14 | |
| UNIPROTKB|J3KNA0 | 495 | OXA1L "Mitochondrial inner mem | 0.469 | 0.521 | 0.262 | 1.9e-14 | |
| UNIPROTKB|Q3SYV3 | 441 | OXA1L "Mitochondrial inner mem | 0.536 | 0.668 | 0.243 | 4.1e-14 |
| TAIR|locus:2014973 AT1G65080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 230/459 (50%), Positives = 314/459 (68%)
Query: 93 ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIA 152
E I ++SSLPV A++ FL+ +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+
Sbjct: 69 EIIPTDDSSLPVLAVVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTIS 128
Query: 153 EXXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIR 212
E + K +DQ S F +E RA GCPS LWF ++Q+PCF + + SIR
Sbjct: 129 ELLPKLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIR 188
Query: 213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
+MSLDGHPGFD GG+ WFQNL++ P G G +FP+L+A HY N+Q+SF S++ + GL
Sbjct: 189 KMSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGL 248
Query: 273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
GLL +YYK YL ++++PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP LGL
Sbjct: 249 TGLLMRYYKLYLEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL 308
Query: 333 DK-VVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPL 391
+ P E +++ ++S +K+ +S++ LTP+EL++LSV+ LSKGDKE I L
Sbjct: 309 SQGATPGMGHSMEISESVIKYVDSDSKEQTLSLQTLTPEELLSLSVQVLSKGDKETSIQL 368
Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
L+LAL K+P + L+LMGQ LQK L EA EYLE AISKL L P++ E ++LL++A
Sbjct: 369 LRLALEKDPGYVRGLVLMGQALLQKTQLSEATEYLELAISKL-LDEDPSDAEDVELLMLA 427
Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511
SQW+G A ++Q K + GI HLER+ L+EP +PKSK HY++ L++L+SAL G++ EA
Sbjct: 428 SQWAGAAYVQQGKLKSGIIHLERVAKLREPGDPKSKEHYFEALLLLSSALYKEGQSDEAA 487
Query: 512 KYLRLAAAHNPQYXXXXXXXXXXXXXFVSDLSSSRRRDY 550
K LR+ HNP Y VSDL S RR+D+
Sbjct: 488 KILRVVVDHNPAYKPLLEQCEDENE-LVSDLVS-RRKDH 524
|
|
| TAIR|locus:2100172 AT3G44370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 223/420 (53%), Positives = 289/420 (68%)
Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAEXXXXXXXXXXXXX 166
+IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++
Sbjct: 123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182
Query: 167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
SG+ +DQ+ LFR+E++ GCPS LW A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct: 183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242
Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K + L AK YK++LNL
Sbjct: 243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTEL-AKAYKTFLNL 301
Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP-DKVVPAAARKPEE 345
+T L+FL + +PQGSL+YW TN SFSI QQ L HP LGL + V A P
Sbjct: 302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361
Query: 346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404
+ E L P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+LAL K+P+ +
Sbjct: 362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLRLALEKDPEYLQ 421
Query: 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464
A+I++GQ QK EA + LE A SKL L PTE E +DLLIVASQW+GV+ IRQ K
Sbjct: 422 AMIILGQALYQKDQFAEAAKCLEQAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQGK 480
Query: 465 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524
EGI HLER+ N+KEP++PKSKAHY D LV+ +SA+ N GR EA KYLR A++P +
Sbjct: 481 TSEGITHLERVANMKEPDDPKSKAHYLDALVLYSSAIFNEGRREEAAKYLRRVVAYDPSF 540
|
|
| TAIR|locus:2174068 OXA1 "homolog of yeast oxidase assembly 1 (OXA1)" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 241 (89.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 74/284 (26%), Positives = 133/284 (46%)
Query: 94 SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
++A +S P+ AL +D H FTGF WW IV +T+ +R + +PL++ Q+K ++A
Sbjct: 124 TLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIKQMKDTTKLAL 183
Query: 154 XXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGC---PSLLWF--IASFAIQVPCFLVGV 208
+ + +D +++ +K+ + F + IQ P F+
Sbjct: 184 MRPRLESIREEMQN--KGMDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMFIQGPLFICFF 241
Query: 209 TSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGK 268
+IR M+ + P F GG WF +LT P + I PV+ GL + + + A +
Sbjct: 242 LAIRNMA-EKVPSFQTGGALWFTDLTT-PDSLY--ILPVI-TGLTFL-ITVECNAQEGME 295
Query: 269 ENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328
N + G + + + L+T+P+ PQ YW+T++ FS++ L +K P + M
Sbjct: 296 GNPMAGTVKTVCRVFA-LLTVPMTMS---FPQAIFCYWITSNLFSLMYGLVIKRPQVKKM 351
Query: 329 LGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKEL 372
L +PD P ++P D L S K++K ++ T ++
Sbjct: 352 LRIPDLPPPPPGQQPS-FD-----LFSALKKMKAMTQDHTQNQI 389
|
|
| ZFIN|ZDB-GENE-071004-49 oxa1l "oxidase (cytochrome c) assembly 1-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 7.4e-17, P = 7.4e-17
Identities = 72/255 (28%), Positives = 116/255 (45%)
Query: 100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVL---QLKKIQRIA-EXX 155
+S PV + + L+ H G PWW IV+ T+ R A+ P+IV + K+ + E
Sbjct: 153 NSTPVGLIQNLLEFMHVSIGLPWWGAIVAGTIVARCAVFPVIVKGQREAAKLNNVMPEMT 212
Query: 156 XXXXXXXXXXXSGKRF-----VDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTS 210
SG +F + +F+++K P F+ +Q P FL +
Sbjct: 213 KLTNRMNEAKQSGNKFEFSKAYTDLMMFQKKKDVN--P-FRGFLVPL-VQAPIFLSFFIA 268
Query: 211 IRRMSLDGHPGFDCGGIWWFQNLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKE 269
+R+MS P GG+WWF +LT P +L P+ + G ++L GA S G +
Sbjct: 269 LRKMSELPVPSLQTGGLWWFTDLTAADPFYIL----PIAVTGTMVAILEL--GAES-GVD 321
Query: 270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329
N L + K+ +M + L P YW+T++ FS+ Q L+HPA R L
Sbjct: 322 NPNLRAM----KTVFRIMPFVILPLTINFPTAVFTYWMTSNLFSLAQVAVLRHPAVRQKL 377
Query: 330 GLPDKVVPAAARKPE 344
+P+++V + PE
Sbjct: 378 RIPERIVHPQSALPE 392
|
|
| TAIR|locus:2039134 OXA1L "AT2G46470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 76/282 (26%), Positives = 128/282 (45%)
Query: 94 SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLK------- 146
+IA +S+ PV AL +D H FTG WW I +TV +R +P+++ QLK
Sbjct: 127 AIAAADSAFPVAALQHLIDAVHSFTGLNWWASIALTTVLIRGVTIPILLNQLKATYKLNV 186
Query: 147 ---KIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPC 203
+++ + + G+R + Q+ LF+ P + IQ P
Sbjct: 187 LRPQLEELRQEMSTKAQDPEAMAEGQRRM-QL-LFKEHGVTPFTP-----LKGLIIQGPI 239
Query: 204 FLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGA 263
F+ +IR M+ + P F GG WF +LT I P+L A V+ +
Sbjct: 240 FISFFFAIRNMA-EKVPSFKTGGTLWFTDLTTTDTTY---ILPLLTAVTFLIMVESNMQE 295
Query: 264 SSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
G N + G + K+ + + +++P+ +G I + YW+T++ F++V L L+ P
Sbjct: 296 GLEG--NPVAGTMKKFSR-IIAFLSIPVL-IG--IEKALFCYWLTSNLFTLVYGLTLRRP 349
Query: 324 ASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVE 365
R +L LPD VV ++ R+P L + P Q ++ E
Sbjct: 350 DVRKLLNLPD-VVNSSTRQPSPSSPLPFSFAEPKDQSVVAQE 390
|
|
| UNIPROTKB|E7EVY0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 8.1e-16, P = 8.1e-16
Identities = 75/286 (26%), Positives = 119/286 (41%)
Query: 83 ETVNLSERVIE-SIA--GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
ET ++ + E S A G S PV + + L+ H G PWW I + TV R + P
Sbjct: 98 ETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFP 157
Query: 140 LIVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAA------GCPSLLWF 193
LIV ++ RI K D I ++ A G
Sbjct: 158 LIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPL 217
Query: 194 IASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
I Q P F+ ++R M+ P GG+WWFQ+LT P+ + L
Sbjct: 218 ILPVT-QAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLA 268
Query: 254 YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFS 313
T + LG E G+ ++ ++ + +M L + + P +YW++++ FS
Sbjct: 269 VTATM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFS 326
Query: 314 IVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQ 359
+VQ L+ PA RT+L +P +VV + P LE+ + P +Q
Sbjct: 327 LVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLESFKKGPLRQ 372
|
|
| RGD|1585024 Oxa1l "oxidase (cytochrome c) assembly 1-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 76/333 (22%), Positives = 135/333 (40%)
Query: 81 PVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPL 140
P + V + + G S PV + + L+ H G PWW I + TV R + PL
Sbjct: 94 PADVVQCATEQSFAELGLGSYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPL 153
Query: 141 IVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGCPSL--LWFIASFA 198
IV ++ +I K DQ ++ + F
Sbjct: 154 IVKGQREAAKIHNHMPEMQKFSARIREAKLSGDQAEFYKATIEMTHYQKKHDIKFFRPLI 213
Query: 199 I---QVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYT 255
+ Q P F+ ++R M+ P GG+WWFQ+LT P+ + L T
Sbjct: 214 LPLTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYVLPLVVT 265
Query: 256 NVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIV 315
+G LG E G+ + ++ + +M L + + + P +YW++++ FS+
Sbjct: 266 ATM--WGVLELGAETGMQSSDLQLMRNVIRVMPLAVLPVTIHFPSAVFMYWLSSNVFSLC 323
Query: 316 QQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIAL 375
Q L+ PA RT L +P +VV ++ P L++ + K +I+ +E +
Sbjct: 324 QVACLRFPAVRTALKIPQRVVHDPSKLPPREGFLKS-FKKGWKNAEIAHRLREREERMQK 382
Query: 376 SVKFLSKGDKERPI---PLLQLALNKEPDNINA 405
+ ++G + PLLQ ++ P+ N+
Sbjct: 383 HLDLAARGPLRQTFTHNPLLQHDPSRSPNTPNS 415
|
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| UNIPROTKB|Q15070 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 73/278 (26%), Positives = 115/278 (41%)
Query: 83 ETVNLSERVIE-SIA--GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
ET ++ + E S A G S PV + + L+ H G PWW I + TV R + P
Sbjct: 98 ETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFP 157
Query: 140 LIVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAA------GCPSLLWF 193
LIV ++ RI K D I ++ A G
Sbjct: 158 LIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPL 217
Query: 194 IASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
I Q P F+ ++R M+ P GG+WWFQ+LT P+ + L
Sbjct: 218 ILPVT-QAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLA 268
Query: 254 YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFS 313
T + LG E G+ ++ ++ + +M L + + P +YW++++ FS
Sbjct: 269 VTATM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFS 326
Query: 314 IVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
+VQ L+ PA RT+L +P +VV + P LE+
Sbjct: 327 LVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLES 364
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| UNIPROTKB|J3KNA0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 73/278 (26%), Positives = 115/278 (41%)
Query: 83 ETVNLSERVIE-SIA--GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
ET ++ + E S A G S PV + + L+ H G PWW I + TV R + P
Sbjct: 158 ETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFP 217
Query: 140 LIVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAA------GCPSLLWF 193
LIV ++ RI K D I ++ A G
Sbjct: 218 LIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPL 277
Query: 194 IASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
I Q P F+ ++R M+ P GG+WWFQ+LT P+ + L
Sbjct: 278 ILPVT-QAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLA 328
Query: 254 YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFS 313
T + LG E G+ ++ ++ + +M L + + P +YW++++ FS
Sbjct: 329 VTATM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFS 386
Query: 314 IVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
+VQ L+ PA RT+L +P +VV + P LE+
Sbjct: 387 LVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLES 424
|
|
| UNIPROTKB|Q3SYV3 OXA1L "Mitochondrial inner membrane protein OXA1L" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 78/320 (24%), Positives = 133/320 (41%)
Query: 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAEXXX 156
G S PV + + L+ H G PWW I + TV R + PLIV ++ +I
Sbjct: 115 GLGSYTPVGLIQNLLEFMHVNLGLPWWGAIAACTVLARCLVFPLIVKGQREAAKIHNHLP 174
Query: 157 XXXXXXXXXXSGKRFVDQISLFRREKRAAGCPS-----LLWFIASFAIQVPCFLVGVTSI 211
K + +R L + Q P F+ ++
Sbjct: 175 EIQKFSARIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFRPLILPLTQAPIFISFFIAL 234
Query: 212 RRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENG 271
R M+ P GG+WWFQ+LT L P+ + L T +G LG E G
Sbjct: 235 REMANLPVPSLQTGGLWWFQDLT------LSD--PIYVLPLVVTATM--WGVLELGAETG 284
Query: 272 LLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL 331
+ ++ ++++ LM L + + + P +YW++++ FS+ Q L+ PA RT+L +
Sbjct: 285 MQSSDLQWMRNFIRLMPLAVLPITIHFPTAVFMYWLSSNMFSLGQVACLRIPAVRTVLKI 344
Query: 332 PDKVVPAAARKPEEIDTLETTLESPAKQLKIS--VENLTPKEL-IALSVKFLSKGDKERP 388
P +VV P+++ E L+S + K + L +E + ++ ++G +
Sbjct: 345 PQRVV----HDPDKLAPREGFLKSFKQGWKNAEMAHQLQERERRMQNHLELAARGPLRQT 400
Query: 389 I---PLLQLALNKEPDNINA 405
PLLQ N P+ N+
Sbjct: 401 FAHNPLLQHGKNDPPNTPNS 420
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WUC5 | ALB33_ARATH | No assigned EC number | 0.5452 | 0.7763 | 0.7544 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.5__850__AT3G44370.1 | annotation not avaliable (540 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 550 | |||
| pfam02096 | 193 | pfam02096, 60KD_IMP, 60Kd inner membrane protein | 7e-18 | |
| COG0706 | 314 | COG0706, YidC, Preprotein translocase subunit YidC | 2e-11 | |
| TIGR03592 | 181 | TIGR03592, yidC_oxa1_cterm, membrane protein inser | 3e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-05 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 7e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.003 |
| >gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 7e-18
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 39/215 (18%)
Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRL----------PPPFPPPLSGKRF 171
W I+ T+ +R+ LLPL + Q K + ++ EL P + P ++
Sbjct: 3 WGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDDP---------QKL 53
Query: 172 VDQISLFRREKR---AAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW 228
++ +E AGC +L IQ+P F+ ++R M+ + G
Sbjct: 54 QQEMMKLYKEHGVNPLAGCLPML-------IQLPIFIALYRALRNMA--ELRSLETAGFL 104
Query: 229 WFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMT 288
W ++L+ I P+L + +LS + + K + +M
Sbjct: 105 WIKDLSAPDPPYF--ILPILAGLTMFLQQKLSPSQDPPDLQQ------SAQMKIMMYIMP 156
Query: 289 LPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
L F P G ++YW+ ++ FS+VQQL ++ P
Sbjct: 157 LIFLFFFLNFPAGLVLYWIVSNLFSLVQQLIIRKP 191
|
Length = 193 |
| >gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 37/228 (16%)
Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
L L F+G W I+ T+ +R+ + PL + + ++ EL P++ +
Sbjct: 95 LFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKI-----KEI 149
Query: 167 SGKRFVDQISLFRREKRA----------AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSL 216
K ++E AGC LL IQ+P F+ +R
Sbjct: 150 QEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLL-------IQMPIFIALYYVLRSTVE 202
Query: 217 DGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGL 275
F + W +L+ P +L + P+L + +LS + ++
Sbjct: 203 LRGAPF----LGWITDLSLPDPDYIL--LLPILAGVTMFLQQKLS-PRNLSTPQD----- 250
Query: 276 LAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
K + +M + F + P G ++YW+ ++ FSI+QQ L P
Sbjct: 251 --PQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKP 296
|
Length = 314 |
| >gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-09
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 43/212 (20%)
Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVD-------- 173
W I+ T+ +R+ LLPL + Q K ++++ EL P+L + +++ D
Sbjct: 2 WGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKE-----IQ-EKYKDDPQKLQQE 55
Query: 174 QISLFRREKR--AAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQ 231
+ L++ E GC LL IQ+P F+ +RR H F W Q
Sbjct: 56 MMKLYKEEGVNPLGGCLPLL-------IQMPIFIALYQVLRRSIELRHAPF-----LWIQ 103
Query: 232 NLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLP 290
+L+ P+ +L P+LM + +LS + K + +M +
Sbjct: 104 DLSAPDPYYIL----PILMGVTMFLQQKLSPSGPP---DP-------AQQKIMMYIMPVM 149
Query: 291 LFFLGYYIPQGSLVYWVTNSSFSIVQQLALKH 322
F P G ++YWV ++ F+I+QQL +
Sbjct: 150 FLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181
|
This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-09
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE 463
AL+ +G + G +EA+EY E A+ P +A L A +
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNL-------AAAYYKLG 48
Query: 464 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523
K+EE + E+ L L A +G+ EA + A +P
Sbjct: 49 KYEEALEDYEKALELDP--------DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429
+ L+ L + GD + + + AL +PDN +A + + G EEA+E E A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
+ P +A L G+A + K+EE + E+
Sbjct: 61 LELD-----PDNAKAYYNL-------GLAYYKLGKYEEALEAYEK 93
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 19/156 (12%)
Query: 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLE 427
+P+ELI + +L K + I L+ AL K+P++ A L+G+ L G A + L
Sbjct: 21 SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELR 80
Query: 428 CAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487
A+S G+P + L+ A + Q K+++ + L L + ++
Sbjct: 81 KALS----LGYP--KNQVLPLLAR------AYLLQGKFQQVLDELPGKTLLDDEG--AAE 126
Query: 488 AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523
GL L G+ A+K A A +P+
Sbjct: 127 LLALRGLAYLGL-----GQLELAQKSYEQALAIDPR 157
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (106), Expect = 3e-05
Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 23/208 (11%)
Query: 338 AAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALN 397
E + E LE K L + + + L+AL GD E + L + AL
Sbjct: 100 NLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA-LYELGDYEEALELYEKALE 158
Query: 398 KEPDNIN---ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454
+P+ AL+ +G G EEA+E LE A+ D A
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----------NPDDDAEALLN 207
Query: 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYL 514
G+ ++ K+EE + + E+ L + L LA L +GR EA + L
Sbjct: 208 LGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYNLALLLLELGRYEEALEAL 259
Query: 515 RLAAAHNPQYNELLEQLENNDEEFVSDL 542
A +P L L E + L
Sbjct: 260 EKALELDPDLYNLGLALLLLLAEALELL 287
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 25/191 (13%)
Query: 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL 419
L I +NL + ++AL+ +L G++E + L+ A P I + + Q L KG L
Sbjct: 526 LTIDPKNL--RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583
Query: 420 EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479
++A+ L A P PEA +L G A + + ++ +++ L
Sbjct: 584 KKALAILNEA-----ADAAPDSPEAWLML-------GRAQLAAGDLNKAVSSFKKLLAL- 630
Query: 480 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL---LEQLENNDE 536
+P+ + L++LA A + A+A L+ A P E L QL +
Sbjct: 631 QPDSALA-------LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683
Query: 537 EFVSDLSSSRR 547
S ++
Sbjct: 684 RTESAKKIAKS 694
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 34/157 (21%), Positives = 54/157 (34%), Gaps = 38/157 (24%)
Query: 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI---S 431
L+ + L++GD + LL+ AL +P + A IL+G L +G A+E LE +
Sbjct: 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALE-RVEEQD 244
Query: 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYY 491
+L E + L+ EG+ L R
Sbjct: 245 PEYL------SEVLPKLM-------ECYQALGDEAEGLEFLRR---------------AL 276
Query: 492 DG------LVVLASALCNVGRNAEAEKYLRLAAAHNP 522
+ L+ LA L A+ LR +P
Sbjct: 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313
|
Length = 389 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
+ G E + + AL +PDN A +G + G EEA+E E A+
Sbjct: 44 YYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96
|
Length = 100 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 550 | |||
| PRK02944 | 255 | OxaA-like protein precursor; Validated | 100.0 | |
| PRK00145 | 223 | putative inner membrane protein translocase compon | 100.0 | |
| PRK01622 | 256 | OxaA-like protein precursor; Validated | 100.0 | |
| TIGR03592 | 181 | yidC_oxa1_cterm membrane protein insertase, YidC/O | 100.0 | |
| PRK02463 | 307 | OxaA-like protein precursor; Provisional | 100.0 | |
| PF02096 | 198 | 60KD_IMP: 60Kd inner membrane protein; InterPro: I | 100.0 | |
| PRK01318 | 521 | membrane protein insertase; Provisional | 100.0 | |
| PRK01001 | 795 | putative inner membrane protein translocase compon | 100.0 | |
| PRK03449 | 304 | putative inner membrane protein translocase compon | 100.0 | |
| COG0706 | 314 | YidC Preprotein translocase subunit YidC [Intracel | 100.0 | |
| PRK02201 | 357 | putative inner membrane protein translocase compon | 100.0 | |
| PRK01315 | 329 | putative inner membrane protein translocase compon | 100.0 | |
| PRK00247 | 429 | putative inner membrane protein translocase compon | 100.0 | |
| KOG1239 | 372 | consensus Inner membrane protein translocase invol | 99.96 | |
| PRK02654 | 375 | putative inner membrane protein translocase compon | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.67 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.65 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.64 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.56 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.5 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.46 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.46 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.45 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.36 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.36 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.33 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.31 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.29 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.29 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.28 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.28 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.27 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.25 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.22 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.22 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.21 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.21 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.21 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.21 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.2 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.17 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.17 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.16 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.16 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.15 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.13 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.11 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.11 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.1 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.08 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.07 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.07 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.06 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.05 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.05 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.04 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.03 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.03 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.02 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.98 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.97 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.96 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.93 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.92 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.91 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.88 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.88 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.87 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.83 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.79 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.79 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.79 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.78 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.77 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.77 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.77 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.76 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.75 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.75 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.74 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.73 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.72 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.72 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.71 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.7 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.7 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.69 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.64 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.62 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.53 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.52 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.5 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.5 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.48 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.47 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.46 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.46 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.44 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.44 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.42 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.4 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.38 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.37 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.37 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.35 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.34 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.33 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.33 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.33 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.32 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.32 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.28 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.28 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.24 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.23 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.22 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.22 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.2 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.18 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.17 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.16 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.16 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.14 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.07 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.05 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.99 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.94 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.94 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.93 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.92 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.89 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.88 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.82 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.81 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.77 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.76 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.76 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.73 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.73 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.72 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.71 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.7 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.69 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.67 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.67 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.66 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.64 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.64 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.6 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.57 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.56 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.56 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.55 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.54 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.48 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.44 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.4 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.36 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.33 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.33 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.32 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.32 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.31 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.3 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.25 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.19 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.19 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.16 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.16 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.1 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.09 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.06 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.05 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.03 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.95 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.86 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.84 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 96.77 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.75 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.74 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 96.72 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.72 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.71 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.61 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.5 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.5 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.37 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.32 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.25 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.24 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.14 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.0 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.99 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.97 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.97 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.96 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.95 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.9 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.88 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.86 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.85 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.82 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.82 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.81 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.7 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 95.69 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.67 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.62 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.61 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.55 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 95.51 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 95.4 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.38 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 95.36 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.34 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 95.25 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.18 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.1 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.03 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.03 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.02 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.96 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.85 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.79 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.71 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.71 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.6 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.53 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.44 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.43 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.39 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 94.32 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.27 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.25 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.25 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.09 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.09 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.03 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.01 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.86 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 93.85 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.74 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.72 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 93.71 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.64 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.48 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.45 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 93.19 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 92.97 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.17 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.08 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.08 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.53 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.5 | |
| TIGR03362 | 301 | VI_chp_7 type VI secretion-associated protein, VC_ | 91.47 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.34 | |
| COG1422 | 201 | Predicted membrane protein [Function unknown] | 91.07 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 91.04 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.96 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 90.81 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 90.45 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.37 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.23 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 89.91 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 89.78 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 89.66 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 89.36 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.36 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 89.35 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 89.24 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.2 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 89.16 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.07 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 88.82 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 88.81 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 88.71 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 88.5 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 88.12 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 88.08 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 87.76 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 87.71 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 87.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 86.89 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 86.57 | |
| KOG1497 | 399 | consensus COP9 signalosome, subunit CSN4 [Posttran | 86.51 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.49 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.16 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 86.08 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 86.05 | |
| PF11421 | 49 | Synthase_beta: ATP synthase F1 beta subunit; Inter | 85.54 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.33 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 84.78 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 83.81 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 83.41 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 83.22 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 83.2 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 83.12 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 82.89 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.69 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.59 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 82.38 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 81.47 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 81.24 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 81.15 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 80.97 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.72 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 80.66 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 80.41 |
| >PRK02944 OxaA-like protein precursor; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=332.05 Aligned_cols=207 Identities=21% Similarity=0.323 Sum_probs=178.8
Q ss_pred cHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCc------ccHHHHHH
Q 008887 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG------KRFVDQIS 176 (550)
Q Consensus 103 p~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~------~~~~~~~~ 176 (550)
-+.++.++++++|+++|.|||++|+++|+++|++++|++++|+|+++||++++|+++++++||+++ +.++|+++
T Consensus 40 ~~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~ 119 (255)
T PRK02944 40 FVYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQ 119 (255)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999999999998754 23568899
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHHHHHHHHHHH
Q 008887 177 LFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTN 256 (550)
Q Consensus 177 l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~~~~~~~~~~ 256 (550)
+|||+ ||+|+.. .+|+++|+|||+++|.++|++. ++.++|++|| ||+.+|| ++|||++++++++++
T Consensus 120 Lyk~~----gvnP~~g-~lp~liQ~Pifi~lf~~i~~~~-----~l~~~~flW~-dLs~~Dp---~~iLPil~~~~~~~~ 185 (255)
T PRK02944 120 LFQKN----GVNPLAG-CLPIFIQMPILIAFYHAIMRTS-----EISKHSFLWF-DLGQADP---YYILPIVAGITTFIQ 185 (255)
T ss_pred HHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHhhH-----HHhhcCCCcc-ccCcchH---HHHHHHHHHHHHHHH
Confidence 99999 5666543 3899999999999999999986 6788999999 9999999 899999999999999
Q ss_pred HHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCHHHHhhhCCC
Q 008887 257 VQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332 (550)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p~~r~~l~i~ 332 (550)
.+++..... ++ . ..++.+++++++++++++.++|+|+.+||++|++++++|+++.+.|.+|+..+-.
T Consensus 186 ~~~~~~~~~---~~---~---~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~~~~~~~~~~~ 252 (255)
T PRK02944 186 QKLMMAGTA---GQ---N---PQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAGG 252 (255)
T ss_pred HHhcccCCC---CC---C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhhcCC
Confidence 887543211 11 1 2345677888888888899999999999999999999999999999888876643
|
|
| >PRK00145 putative inner membrane protein translocase component YidC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=319.78 Aligned_cols=198 Identities=19% Similarity=0.282 Sum_probs=168.5
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--cHHHHHHHHHHHhhhcC
Q 008887 109 SFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAG 186 (550)
Q Consensus 109 ~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~~~~~~~l~kk~~~~~g 186 (550)
..+..+|..+|+|||++|+++|+++|++++|++++|+|+++||++++|+++++++|+++++ .++|++++|||+ |
T Consensus 18 ~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~----~ 93 (223)
T PRK00145 18 GFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEK----G 93 (223)
T ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHh----C
Confidence 3333334446899999999999999999999999999999999999999999999998764 467899999999 6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHHHHHHHHHHHHHHhhccCcC
Q 008887 187 CPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSL 266 (550)
Q Consensus 187 ~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~~~~~~~~~~~~~~~~~~~~ 266 (550)
|+|+.. .+|+++|+|||+++|+++|+++ ++.++|++||+|||.+|| ++|||++++++++++.++..+..
T Consensus 94 inp~~~-~lp~liQiPif~~l~~~i~~~~-----~~~~~~flW~~dLt~~Dp---~~iLPil~~~~~~l~~~~~~~~~-- 162 (223)
T PRK00145 94 VNPLGG-CLPLLIQWPILIALYYVFNNLT-----GINGVSFLWIKDLAKPDI---TWILPILSGATTYLSGYLMTKAD-- 162 (223)
T ss_pred CCchHH-HHHHHHHHHHHHHHHHHHHHhh-----hccCCCccChhhccCcch---HHHHHHHHHHHHHHHHHHcCCCC--
Confidence 666654 3898999999999999999996 688999999999999999 89999999999999998865431
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCHHHHhh
Q 008887 267 GKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p~~r~~ 328 (550)
..+ .+.++.+++++++.+++++.++|+|+++||++|++++++|+++.++...++.
T Consensus 163 -~~~------~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~l~~~~~~~~ 217 (223)
T PRK00145 163 -SSQ------AGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKKLELKKK 217 (223)
T ss_pred -hhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 111 2345667778888888888999999999999999999999999987655543
|
|
| >PRK01622 OxaA-like protein precursor; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=309.21 Aligned_cols=198 Identities=20% Similarity=0.302 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHhCCCCCCCCCCCcCccc-------HH
Q 008887 104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGKR-------FV 172 (550)
Q Consensus 104 ~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~----~~k~~~l~p~l~~~~~~~~~~~~-------~~ 172 (550)
+.++.++++++|+++|.|||++|+++|+++|++++|++++|+|+ ++||+++||+++++++||+++++ ++
T Consensus 42 ~~p~~~ll~~l~~~~~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~kyk~~~d~~~~~~~~~ 121 (256)
T PRK01622 42 VYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQK 121 (256)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHHHhccCCHHHHHHHHH
Confidence 67777899999999999999999999999999999999999999 89999999999999999876533 45
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHHHHHHH
Q 008887 173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGL 252 (550)
Q Consensus 173 ~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~~~~~~ 252 (550)
|++++|||+ ||+|+....+|+++|+|||+++|+++|++ |++.++|++|| ||+.+| +|||++++++
T Consensus 122 e~~~Lyk~~----gi~P~~~g~lp~liQ~Pif~~lf~~lr~~-----~~l~~~~flW~-dLs~~D-----~ILPil~~~~ 186 (256)
T PRK01622 122 EMMELYKSG----NINPLAMGCLPLLIQMPILSAFYYAIRRT-----EEIASHSFLWF-NLGHAD-----HILPIIAGLT 186 (256)
T ss_pred HHHHHHHHc----CCCCchhhHHHHHHHHHHHHHHHHHHHhC-----hhccCCCceee-CCcchh-----HHHHHHHHHH
Confidence 778899998 66666534499999999999999999987 47899999999 999987 6999999999
Q ss_pred HHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCH
Q 008887 253 HYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (550)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p 323 (550)
++++.+++..... ++. ..+.+|.+++++++++++++.++|+|+++||++|++++++|+++.+..
T Consensus 187 ~~~~~~~~~~~~~----~~~---q~~~~k~m~~~~pi~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~ 250 (256)
T PRK01622 187 YFIQMKVSQSNGT----SPE---QVQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLRKV 250 (256)
T ss_pred HHHHHHHcCCCCC----ChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987663211 111 134566677888888888999999999999999999999999988654
|
|
| >TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=293.70 Aligned_cols=178 Identities=26% Similarity=0.443 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--cHHHHHHHHHHHhhhcCCCchhHHHHHHH
Q 008887 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFIASFA 198 (550)
Q Consensus 121 pw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~~~~~~~l~kk~~~~~g~~~~~~~~l~~l 198 (550)
|||++|+++|+++|++++|++++|+|+++||++++|+++++++|+++++ .++|++++|||| ||+|++. ++|++
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~----~~~p~~~-~lp~l 75 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEE----GVNPLGG-CLPLL 75 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh----CCCcHHH-HHHHH
Confidence 7999999999999999999999999999999999999999999998764 367899999999 7877765 48889
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHHHHHHHHHHHHHHhhccCcCCcccchhhHHHH
Q 008887 199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAK 278 (550)
Q Consensus 199 ~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (550)
+|+|||+++|.++|++. ++.++|++||+||+.+|| +++||++++++++++.+++..... + .+
T Consensus 76 iQ~Pif~~~~~~lr~~~-----~l~~~~flW~~dL~~~Dp---~~iLPii~~~~~~~~~~~~~~~~~----~------~~ 137 (181)
T TIGR03592 76 IQMPIFIALYQVLRRSI-----ELRHAPFLWIKDLSAPDP---YYILPILMGATMFLQQKLSPSGPP----D------PA 137 (181)
T ss_pred HHHHHHHHHHHHHHhhH-----HhccCCCcCccccCcccH---HHHHHHHHHHHHHHHHHhcCCCCC----C------HH
Confidence 99999999999999984 789999999999999999 899999999999999998765321 1 12
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhc
Q 008887 279 YYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK 321 (550)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~ 321 (550)
.+|.+++++++.+++++.++|+|+.+||++|++++++|+++.+
T Consensus 138 ~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~ 180 (181)
T TIGR03592 138 QQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIIN 180 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677888888888899999999999999999999998875
|
This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here. |
| >PRK02463 OxaA-like protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=311.78 Aligned_cols=209 Identities=21% Similarity=0.305 Sum_probs=176.4
Q ss_pred cHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHhCCCCCCCCCCCcCcc-------cH
Q 008887 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGK-------RF 171 (550)
Q Consensus 103 p~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~----~~k~~~l~p~l~~~~~~~~~~~-------~~ 171 (550)
-+.++.++++++|+++|++||++|+++|++||++++|++++|+++ ++||++++|++++|++||++++ .+
T Consensus 41 l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q 120 (307)
T PRK02463 41 LGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNATTQEEKMAAQ 120 (307)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCCChHHHHHHH
Confidence 467788899999999999999999999999999999999988875 6899999999999999988653 25
Q ss_pred HHHHHHHHHHh--hhc--CCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHH
Q 008887 172 VDQISLFRREK--RAA--GCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPV 247 (550)
Q Consensus 172 ~~~~~l~kk~~--~~~--g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~ 247 (550)
+|++++|||++ +.. || +|+|+|+|||+++|++++.. |++.+++|+|| ||+.| +++||+
T Consensus 121 ~em~~lyke~ginp~~~~GC-------LP~LIQ~PIf~aly~ai~~~-----~~l~~~~flwi-dL~~p-----~~iLpi 182 (307)
T PRK02463 121 TELMAAQRENGISMLGGIGC-------LPLLIQMPFFSALYFAAQYT-----KGVSTSTFLGI-DLGSP-----SLVLTA 182 (307)
T ss_pred HHHHHHHHHcCCCCccccch-------HHHHHHHHHHHHHHHHHhcc-----hhhccCCeeee-ecCch-----hHHHHH
Confidence 67889999997 443 67 99999999999999999853 68999999999 99865 579999
Q ss_pred HHHHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhc---CHH
Q 008887 248 LMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK---HPA 324 (550)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~---~p~ 324 (550)
+++++++++.+++..... .+ ..+.+|.+++++++++++++.++|+|+.+||++|++++++|+++.+ +|.
T Consensus 183 i~~v~~~~q~~~~~~~~~--~~------q~~~mk~m~~~~Pim~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~~pk 254 (307)
T PRK02463 183 IIGVLYFFQSWLSMMGVP--EE------QREQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYILKPR 254 (307)
T ss_pred HHHHHHHHHHHHhccCCC--hh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999987654311 11 1245677889999999999999999999999999999999999865 777
Q ss_pred HHhhhCCCCCCCC
Q 008887 325 SRTMLGLPDKVVP 337 (550)
Q Consensus 325 ~r~~l~i~~~~~~ 337 (550)
+|+.+.-....+|
T Consensus 255 ~~~~i~~e~~~~p 267 (307)
T PRK02463 255 LRKQIAEEFAKNP 267 (307)
T ss_pred HHHHHHHHhhcCC
Confidence 7776655444444
|
|
| >PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=300.02 Aligned_cols=188 Identities=29% Similarity=0.491 Sum_probs=164.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--cHHHHHHHHHHHhhhcCCCchhHHHHHHH
Q 008887 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFIASFA 198 (550)
Q Consensus 121 pw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~~~~~~~l~kk~~~~~g~~~~~~~~l~~l 198 (550)
+||++|+++|+++|++++|++++++|+++||++++|+++++++|+++++ .++|++++|||| ||+|++. ++|++
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~----~~~p~~~-~~~~l 76 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKH----GVNPLKG-CLPPL 76 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc----CCCcHHH-HHHHH
Confidence 8999999999999999999999999999999999999999999996653 467889999998 8888855 47889
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCC-----ccchhHHHHHHHHHHHHHHHHHhhccCcCCcccchh
Q 008887 199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYP-----HGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLL 273 (550)
Q Consensus 199 ~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~d-----p~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (550)
+|+|||+++|.++|+|+. +|++.++|++||+||+.+| | ++|||++++++++++++++.+ ....+..
T Consensus 77 iq~Pif~~~~~~lr~~~~--~~~~~~~g~lw~~dL~~~D~~~~~p---~~iLPil~~~~~~~~~~~~~~-~~~~~~~--- 147 (198)
T PF02096_consen 77 IQIPIFIGLFRALRRMAE--VPSLATGGFLWFPDLTAPDPTMGLP---YFILPILAGASMFLNQELSMK-NSKQKSP--- 147 (198)
T ss_pred HHHHHHHHHHHHHHHHHH--hcccccCceeChHhcCCCCccchhH---HHHHHHHHHHHHHHHHHHHHh-ccccCCc---
Confidence 999999999999999986 7899999999999999999 7 899999999999999999875 2111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCH
Q 008887 274 GLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (550)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p 323 (550)
...+.+|.+++++++.+++++.++|+|+.+||++|++++++|+.+.+++
T Consensus 148 -~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~ 196 (198)
T PF02096_consen 148 -QQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRP 196 (198)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1135566677788888888899999999999999999999999998764
|
Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane |
| >PRK01318 membrane protein insertase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=335.12 Aligned_cols=198 Identities=21% Similarity=0.377 Sum_probs=173.0
Q ss_pred CCCcc--cHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--cHHH
Q 008887 98 EESSL--PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVD 173 (550)
Q Consensus 98 ~~~~~--p~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~~~~ 173 (550)
+.||. .+.++.++|+++|.++| |||++||++|+++|++++|++++|.|+++||++++|+|++|++|+++++ .++|
T Consensus 298 ~~G~~~~~~~pl~~~L~~i~~~~g-~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~k~~~e 376 (521)
T PRK01318 298 DYGWLWFITKPLFWLLDFLHSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQE 376 (521)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHHHHHHH
Confidence 55554 58999999999999999 9999999999999999999999999999999999999999999998775 4689
Q ss_pred HHHHHHHHh--hhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCcc-ccccCCCCCccchhHHH-----
Q 008887 174 QISLFRREK--RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGSIF----- 245 (550)
Q Consensus 174 ~~~l~kk~~--~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~l-W~~dLt~~dp~~~~~il----- 245 (550)
+|++|||++ +..|| +|+|+|+||||++|.+++++. .+..++|+ ||+||+.+|| ++||
T Consensus 377 ~~~LYKk~~vnPl~gc-------lp~liQiPifialy~~l~~~~-----el~~~~fl~Wi~DLs~~Dp---~~il~~~~l 441 (521)
T PRK01318 377 MMELYKKEKVNPLGGC-------LPILIQIPIFFALYKVLLVSI-----ELRHAPFIGWIHDLSAPDP---YFILHIGLL 441 (521)
T ss_pred HHHHHHHcCCCccchh-------HHHHHHHHHHHHHHHHHHHHH-----HhccCchheeecccccccc---chhHHHHHH
Confidence 999999996 56677 999999999999999999986 57778887 9999999999 7888
Q ss_pred HHHHHHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCH
Q 008887 246 PVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (550)
Q Consensus 246 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p 323 (550)
|++++++++++.+++... . + + .+++++.+|++++++++.++|+|+++||++|++++++|++++++.
T Consensus 442 Pil~~~~~~~~~~l~~~~--~----~---~---~q~kim~~mpi~~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~~~ 507 (521)
T PRK01318 442 PILMGITMFLQQKLNPTP--T----D---P---MQAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRR 507 (521)
T ss_pred HHHHHHHHHHHHHhcCCC--C----C---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999887432 1 1 1 123345567888888889999999999999999999999998754
|
|
| >PRK01001 putative inner membrane protein translocase component YidC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=332.47 Aligned_cols=199 Identities=20% Similarity=0.360 Sum_probs=167.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--cHHHHHHHHHHHh--
Q 008887 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREK-- 182 (550)
Q Consensus 107 ~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~~~~~~~l~kk~~-- 182 (550)
+.+++.++|..+| |||++||++||+||++++||+++|.++++||+.+||+|++|++||++++ .++|+|++|||++
T Consensus 562 L~~ll~~fh~l~G-nwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVN 640 (795)
T PRK01001 562 LFIIMKFFKFLTG-SWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVN 640 (795)
T ss_pred HHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCC
Confidence 3466688999999 9999999999999999999999999999999999999999999998775 4789999999997
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCcc--ccccCCCCCccc-----------hhHHHHHHH
Q 008887 183 RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW--WFQNLTEYPHGV-----------LGSIFPVLM 249 (550)
Q Consensus 183 ~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~l--W~~dLt~~dp~~-----------~~~ilP~~~ 249 (550)
+..|| +|+|+|+||||++|.+++++. .+...+|+ |++||+.+||.+ .+.|||+++
T Consensus 641 Pl~GC-------LPmLIQmPIFfALY~vL~~si-----eLRgasFLpgWI~DLSapDplf~~~~~i~FiGd~i~ILPILm 708 (795)
T PRK01001 641 PITGC-------LPLLIQLPFLIAMFDLLKSSF-----LLRGASFIPGWIDNLTAPDVLFSWETPIWFIGNEFHLLPILL 708 (795)
T ss_pred chHHH-------HHHHHHHHHHHHHHHHHHHhH-----HhcCCchhhhhHhhccCCCccccccccccccccchhHHHHHH
Confidence 66777 999999999999999999986 45566776 999999999822 134999999
Q ss_pred HHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCH
Q 008887 250 AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (550)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p 323 (550)
+++++++++++..... +..+.. ++.++.|+.+|++++++++.++|+|+++||++|++++++|++++++.
T Consensus 709 gvtmflqqkls~~~~~-dp~t~q----q~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~ 777 (795)
T PRK01001 709 GVVMFAQQKISSLKRK-GPVTDQ----QRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKI 777 (795)
T ss_pred HHHHHHHHHhcccCCC-Cccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 9999999998765421 111111 22334455678888888889999999999999999999999988653
|
|
| >PRK03449 putative inner membrane protein translocase component YidC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=294.10 Aligned_cols=217 Identities=20% Similarity=0.267 Sum_probs=167.0
Q ss_pred CCCcccHHHHHHHHHHHhh-----hcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc--c
Q 008887 98 EESSLPVRALISFLDTYHD-----FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--R 170 (550)
Q Consensus 98 ~~~~~p~~~~~~~l~~~h~-----~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~--~ 170 (550)
+.+++|++++.++++.++. .+|+|||++|+++|+++|++++|++++|+|+++||++++|+++++++||++++ .
T Consensus 3 ~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~~ 82 (304)
T PRK03449 3 DFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKM 82 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHHH
Confidence 4578999999999887653 58999999999999999999999999999999999999999999999998765 4
Q ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCCc----------------cCCcc--
Q 008887 171 FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGH----PGFD----------------CGGIW-- 228 (550)
Q Consensus 171 ~~~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~----~~l~----------------~~g~l-- 228 (550)
++|++++|||+ ||+|+.. .+|+|+|+|||+++|.++|+|+.... ++++ ..+|+
T Consensus 83 ~~e~~~Lyk~~----gvnP~~g-clP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~ 157 (304)
T PRK03449 83 ALEMQKLQKEH----GFNPILG-CLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDA 157 (304)
T ss_pred HHHHHHHHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhh
Confidence 67899999999 5555433 39999999999999999999953210 1100 01344
Q ss_pred ---------ccc----------cCCCCCccchhHHHHHHHHHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHH
Q 008887 229 ---------WFQ----------NLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTL 289 (550)
Q Consensus 229 ---------W~~----------dLt~~dp~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (550)
|+. |++..|..+...++|++++++++++.++++...... ++...++..++|.|+++||+
T Consensus 158 ~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~--~~~~~~~~~m~k~M~~~mP~ 235 (304)
T PRK03449 158 RLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAE--AAANPQTAMMNKLALWVFPL 235 (304)
T ss_pred hhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCcchHHHHHHHHHHhHH
Confidence 332 444444311234688999999999998876542211 11111222345678888999
Q ss_pred HHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhc
Q 008887 290 PLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK 321 (550)
Q Consensus 290 ~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~ 321 (550)
++++++.++|+|+.+||++||+++++|+++..
T Consensus 236 m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~ 267 (304)
T PRK03449 236 GVLVGGPFLPLAILLYWVSNNIWTFGQQHYVF 267 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
|
|
| >COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=293.68 Aligned_cols=207 Identities=22% Similarity=0.389 Sum_probs=179.8
Q ss_pred CCCcccHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCc-Ccc--cHHHH
Q 008887 98 EESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL-SGK--RFVDQ 174 (550)
Q Consensus 98 ~~~~~p~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~-~~~--~~~~~ 174 (550)
.++|.+...+..+++++|.+.|++||++|+++|+++|++++|++.++.++++||+++||+++++++|++ +++ .++|+
T Consensus 86 ~~f~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~~~~q~e~ 165 (314)
T COG0706 86 GWFWNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDKQKQQQEM 165 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHHHH
Confidence 445666666888999999999999999999999999999999999999999999999999999999999 553 35699
Q ss_pred HHHHHHHh--hhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCcc-ccccCCCCCccchhH--HHHHHH
Q 008887 175 ISLFRREK--RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGS--IFPVLM 249 (550)
Q Consensus 175 ~~l~kk~~--~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~l-W~~dLt~~dp~~~~~--ilP~~~ 249 (550)
+++||||+ +..|| +|+++|+|||+++|.+++++. .+...+|+ |+.||+.+|| ++ ++|+++
T Consensus 166 ~~Lyk~~~vnPl~gc-------lP~liQ~Pifialy~~l~~~~-----~l~~~~f~~w~~dl~~~dp---~~~~~~pii~ 230 (314)
T COG0706 166 MKLYKKHKVNPLAGC-------LPLLIQMPIFIALYYVLRSTV-----ELRGAPFLGWITDLSLPDP---DYILLLPILA 230 (314)
T ss_pred HHHHHHhCCCchhhH-------HHHHHHHHHHHHHHHHHHhcc-----cccccchhhhhhcccCCCC---chhhHHHHHH
Confidence 99999997 67788 999999999999999999997 55556666 9999999999 55 459999
Q ss_pred HHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCHHHHh
Q 008887 250 AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT 327 (550)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p~~r~ 327 (550)
+++++.+.+++....+ . .+ .+.+++++.+|++.+.+++..+|+|+.+||+.|++++++|+++++++..++
T Consensus 231 gv~~f~q~~ls~~~~~-~-~q------~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~~~ 300 (314)
T COG0706 231 GVTMFLQQKLSPRNLS-T-PQ------DPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKPLEKK 300 (314)
T ss_pred HHHHHHHHHhccccCC-c-cc------CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Confidence 9999999999887532 1 11 135567888889988899999999999999999999999999999887765
|
|
| >PRK02201 putative inner membrane protein translocase component YidC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=295.17 Aligned_cols=212 Identities=11% Similarity=0.168 Sum_probs=164.2
Q ss_pred cccHHHHHHHH---HHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCc-c-------
Q 008887 101 SLPVRALISFL---DTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG-K------- 169 (550)
Q Consensus 101 ~~p~~~~~~~l---~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~-~------- 169 (550)
.+|+.++...+ +.+|...|+|||++|+++|+++|++++|++++|+++++||+++||++++|++||+++ +
T Consensus 109 v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~~k 188 (357)
T PRK02201 109 VYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQR 188 (357)
T ss_pred HHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHHHH
Confidence 35555554443 344567899999999999999999999999999999999999999999999998765 2
Q ss_pred cHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCc------cchhH
Q 008887 170 RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH------GVLGS 243 (550)
Q Consensus 170 ~~~~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp------~~~~~ 243 (550)
.++|++++|||+ ||+|+.. .+|+|+|+|||+++|.++|.+. ++....++|+ ||+.+|+ ++.+.
T Consensus 189 ~q~e~~~Lykk~----ginP~~g-clP~LiQ~Pif~aly~vl~~~~-----~l~~~~flgi-dLs~~~~~~~~~~~~~~l 257 (357)
T PRK02201 189 KQQEIQELYKKH----NISPFSP-FVQMFVTLPIFIAVYRVVQSLP-----SIKVTTWLGI-DLSATSWQEIFAGNWIYL 257 (357)
T ss_pred HHHHHHHHHHHc----CCCcHHH-HHHHHHHHHHHHHHHHHHHhhH-----hhccCCCccc-ccCCCChhhhccccchHH
Confidence 357889999999 4544432 2999999999999999999885 6778899999 9999874 12245
Q ss_pred HHHHHHHHHHHHHHHHhh----ccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHH
Q 008887 244 IFPVLMAGLHYTNVQLSF----GASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLA 319 (550)
Q Consensus 244 ilP~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~ 319 (550)
+++++++++++++..+.. +.......+..+.+.++.++.++.+|++.+++++..+|+|+.+||++|++++++|+++
T Consensus 258 ~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~ 337 (357)
T PRK02201 258 PILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLG 337 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777775543 2111000011122334566778899999999999999999999999999999999998
Q ss_pred hcCH
Q 008887 320 LKHP 323 (550)
Q Consensus 320 ~~~p 323 (550)
.+.-
T Consensus 338 i~~~ 341 (357)
T PRK02201 338 IHYF 341 (357)
T ss_pred HHHH
Confidence 8754
|
|
| >PRK01315 putative inner membrane protein translocase component YidC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=293.02 Aligned_cols=216 Identities=21% Similarity=0.336 Sum_probs=164.8
Q ss_pred CCCcccHHHHH-HHHHHHhh--------hcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCc
Q 008887 98 EESSLPVRALI-SFLDTYHD--------FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG 168 (550)
Q Consensus 98 ~~~~~p~~~~~-~~l~~~h~--------~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~ 168 (550)
++..+|+.++. .++.++|. .+|+|||++|+++|+++|++++|++++|+|+++||++++|++++|++||+++
T Consensus 9 ~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~~ 88 (329)
T PRK01315 9 SAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGD 88 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhH
Confidence 34567877765 33345553 4689999999999999999999999999999999999999999999999877
Q ss_pred c--cHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCC----------CCCCccCCccccccCCCC
Q 008887 169 K--RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDG----------HPGFDCGGIWWFQNLTEY 236 (550)
Q Consensus 169 ~--~~~~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~----------~~~l~~~g~lW~~dLt~~ 236 (550)
+ .++|++++|||+ ||+|+.. .+|+|+|+|||+++|+++|+++... .+++..++++|+ +|+..
T Consensus 89 ~~~~~~e~~~Lykk~----ginp~~g-clp~liQ~Pif~alf~~l~~~~~~~~~~~~~~~~~~~s~~~~~~fg~-~L~~~ 162 (329)
T PRK01315 89 RERMSQEMMKLYKET----GTNPLSS-CLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGA-PLAAT 162 (329)
T ss_pred HHHHHHHHHHHHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccc-ccccc
Confidence 5 367999999999 5655543 3999999999999999999876321 234556667766 24332
Q ss_pred -----Cc-----cchhHHHHHHHHHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 008887 237 -----PH-----GVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYW 306 (550)
Q Consensus 237 -----dp-----~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw 306 (550)
++ ...+.|||++++++++++....+.+..... + ...++.+.+|.|+++|++++++++.++|+|+.+||
T Consensus 163 f~~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~-~-~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LYW 240 (329)
T PRK01315 163 FLQALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPE-A-KTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYW 240 (329)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-c-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122468899999999988754433221111 1 11334566778899999999999999999999999
Q ss_pred hhhhHHHHHHHHHhc
Q 008887 307 VTNSSFSIVQQLALK 321 (550)
Q Consensus 307 ~~s~~~~~~q~~~~~ 321 (550)
++||+++++|+++..
T Consensus 241 ~~snl~si~Qq~~v~ 255 (329)
T PRK01315 241 LTSNVWTMGQQFYVI 255 (329)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999997643
|
|
| >PRK00247 putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=281.48 Aligned_cols=214 Identities=19% Similarity=0.275 Sum_probs=153.9
Q ss_pred CCcccHHHHHHHHHH-Hhhhc----CChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCccc---
Q 008887 99 ESSLPVRALISFLDT-YHDFT----GFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR--- 170 (550)
Q Consensus 99 ~~~~p~~~~~~~l~~-~h~~~----glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~~--- 170 (550)
...+|++++.+++.. ++++. |+|||++|+++||+||++++|++++|.++++||+.++|++++|+++|+++++
T Consensus 4 ~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~e~ 83 (429)
T PRK00247 4 IFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEAS 83 (429)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCHHH
Confidence 356899888877774 44443 6899999999999999999999999999999999999999999999887642
Q ss_pred ----HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc----------------------
Q 008887 171 ----FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDC---------------------- 224 (550)
Q Consensus 171 ----~~~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~---------------------- 224 (550)
++|++++||++ ||+|+.. .+|+|+|+|||+++|++||+|+. +.+++.+
T Consensus 84 ~~~~qqe~~~LyKe~----ginP~~g-cLP~LIQiPIfigLy~vir~ma~-~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~ 157 (429)
T PRK00247 84 IRELQQKQKDLNKEY----GYNPLAG-CVPALIQIPVFLGLYQVLLRMAR-PEGGLENPVHQPIGFLTSEEVESFLQGRV 157 (429)
T ss_pred HHHHHHHHHHHHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHhccc-cCCccccccccccccCCHHHHHHHHhccc
Confidence 46788999999 4544432 39999999999999999999983 4444332
Q ss_pred -------------CCccccccCCCCCccchhHHHHHHH--HHHHHHHHHHhhccCcC--CcccchhhHHHHHHHHHHHHH
Q 008887 225 -------------GGIWWFQNLTEYPHGVLGSIFPVLM--AGLHYTNVQLSFGASSL--GKENGLLGLLAKYYKSYLNLM 287 (550)
Q Consensus 225 -------------~g~lW~~dLt~~dp~~~~~ilP~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 287 (550)
++++|+ +.+.+|. .+++||+++ +++++++..+++..... ...+.....+.+.+..+++++
T Consensus 158 fGvpL~~~~sm~~e~~~~~-~~~~~~v--~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~ 234 (429)
T PRK00247 158 FNVPLPAYVSMPAEQLAYL-GTTQATV--LAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILA 234 (429)
T ss_pred cCCCcccccccchhhhhhc-cCCccch--HHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHh
Confidence 222232 1233332 247888554 44455666665543211 111122223445565666777
Q ss_pred HHHHHHHhhh--hhhhHHHHHhhhhHHHHHHHHHhc
Q 008887 288 TLPLFFLGYY--IPQGSLVYWVTNSSFSIVQQLALK 321 (550)
Q Consensus 288 ~~~~~~~~~~--~p~~l~lYw~~s~~~~~~q~~~~~ 321 (550)
++++++++++ +|+|+++||++||+|+++|+.+..
T Consensus 235 Pim~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~ 270 (429)
T PRK00247 235 PIFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMY 270 (429)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHH
Confidence 8777776655 799999999999999999999765
|
|
| >KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=249.76 Aligned_cols=220 Identities=27% Similarity=0.434 Sum_probs=184.5
Q ss_pred CCCCcccHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCcCcc-------
Q 008887 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK------- 169 (550)
Q Consensus 97 ~~~~~~p~~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~~------- 169 (550)
...+|.|+..+++.|+.+|.++|+|||++|+.+|+.+|..++|+.++++|+.+|++.+.|+|+++.++....+
T Consensus 77 ~~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~ 156 (372)
T KOG1239|consen 77 ALSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALL 156 (372)
T ss_pred HhcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchH
Confidence 4778999999999999999999999999999999999999999999999999999999999998876543322
Q ss_pred -cHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccCCccccccCCCCCccchhHHHHHH
Q 008887 170 -RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVL 248 (550)
Q Consensus 170 -~~~~~~~l~kk~~~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m~~~~~~~l~~~g~lW~~dLt~~dp~~~~~ilP~~ 248 (550)
-++++..++++| |+++ +.+.+| ++|+|+|+++|++||.|+ .+++++.++|++||+||+.+|| ++++|++
T Consensus 157 ~~q~~~~~l~~~~----~v~~-~~l~~~-v~q~~l~~sff~air~ma-~~v~~f~t~g~~wf~dLt~~dp---~~ilp~i 226 (372)
T KOG1239|consen 157 SWQEEQKLLVKKY----GVKP-KQLALP-VVQGPLFISFFMAIRVMA-VPVPSFTTGGLLWFPDLTGPDP---LYILPGI 226 (372)
T ss_pred HHHHHHHhhhhhc----CCCc-chhhhh-hhcchhHHHHHHHHHHhh-ccccccchhhHHhcccccccCc---chhhHHH
Confidence 145677888888 7876 665555 899999999999999999 8999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHhhccCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHHHHHhcCHHHHhh
Q 008887 249 MAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328 (550)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~lYw~~s~~~~~~q~~~~~~p~~r~~ 328 (550)
+++++..+++++...... .... ...++.+..++++..+.++.++|.++++||+ ++.+|..+++. .+|..
T Consensus 227 t~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~-~vr~~ 295 (372)
T KOG1239|consen 227 TLATLTLFIELGAETGLS---SSKL---LPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS-EVRKK 295 (372)
T ss_pred HHHHHHHHHHHHHHhhhh---cccc---cchhHHHHHHhhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH-HHHHh
Confidence 999999999887654211 1111 2234444555555555556899999999999 99999999998 99999
Q ss_pred hCCCCCCCC
Q 008887 329 LGLPDKVVP 337 (550)
Q Consensus 329 l~i~~~~~~ 337 (550)
++++...+.
T Consensus 296 l~~~~~~~~ 304 (372)
T KOG1239|consen 296 LGIPDVPSI 304 (372)
T ss_pred cCCCCCCCC
Confidence 999888775
|
|
| >PRK02654 putative inner membrane protein translocase component YidC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=225.53 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCC----CCCCCCcCcc--cHHHHHHHH
Q 008887 105 RALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLP----PPFPPPLSGK--RFVDQISLF 178 (550)
Q Consensus 105 ~~~~~~l~~~h~~~glpw~~~I~~~t~~vRl~~lPl~i~~~~~~~k~~~l~p~l~----~~~~~~~~~~--~~~~~~~l~ 178 (550)
.++..+++++|.++| +||++|+++|+++|++++|++++|+|+++||+.+||+|+ +|++||++++ .++|++++|
T Consensus 11 ~il~~iL~f~y~~vg-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKdDpqk~QqEmmkLY 89 (375)
T PRK02654 11 NVMLPILDFFYGIVP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKNDPQKQQEEMGKLM 89 (375)
T ss_pred hHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 556688999999999 999999999999999999999999999999999999996 5888888774 468999999
Q ss_pred HHHh-hhcCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008887 179 RREK-RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRM 214 (550)
Q Consensus 179 kk~~-~~~g~~~~~~~~l~~l~q~Pifi~~~~~lr~m 214 (550)
||++ +..|| +|+|+|+|||+++|.++|..
T Consensus 90 KE~GNPlaGC-------LP~LIQmPIF~aLY~~LR~s 119 (375)
T PRK02654 90 KEFGNPLAGC-------LPLLVQMPILFALFATLRGS 119 (375)
T ss_pred HHcCCChhhH-------HHHHHHHHHHHHHHHHHHhC
Confidence 9997 66788 99999999999999999984
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-16 Score=158.78 Aligned_cols=220 Identities=16% Similarity=0.136 Sum_probs=166.6
Q ss_pred hhhHHHHHhhhhHHHHHHHHHhcCHHHHhhhCCCCCCCCCCCCCCccccccCcCC--CCchhhccCccCCCChHHHHHHH
Q 008887 299 PQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTL--ESPAKQLKISVENLTPKELIALS 376 (550)
Q Consensus 299 p~~l~lYw~~s~~~~~~q~~~~~~p~~r~~l~i~~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~la 376 (550)
|..+=.|.-.++++.-.-.+-.......+++.+.+.....-.. ..-+...++.+ .-..+.+++..+.-.+++..++|
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gN-la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nla 327 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGN-LACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLA 327 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccc-eEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 4444556667777766655544444555555554433322111 11122223322 23345556665555778888999
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
.++-..|+.++|+.+|.++|...|.++++.++||.+|.++|.+++|...|+++++. +|... .++.+||
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v-----~p~~a-------aa~nNLa 395 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV-----FPEFA-------AAHNNLA 395 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----Chhhh-------hhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999 55544 3788999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDE 536 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~ 536 (550)
.+|.++|++++|+.+|++++++. |... +++.++|..|..+|+.++|++.|.+++.++|.+.+++.+|..+..
T Consensus 396 ~i~kqqgnl~~Ai~~YkealrI~-P~fA-------da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALRIK-PTFA-------DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-chHH-------HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 99999999999999999999998 8777 899999999999999999999999999999999999998887655
Q ss_pred HHH
Q 008887 537 EFV 539 (550)
Q Consensus 537 ~~~ 539 (550)
+.+
T Consensus 468 DsG 470 (966)
T KOG4626|consen 468 DSG 470 (966)
T ss_pred ccC
Confidence 543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=136.65 Aligned_cols=145 Identities=24% Similarity=0.247 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
....+|..|+..|++..|...+++||+.||++..+|..++.+|...|+.+.|.+.|++|+.+ +|++. +
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----~p~~G-d------ 104 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-----APNNG-D------ 104 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----CCCcc-c------
Confidence 44589999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
..+|.|.-++.+|++++|..+|++|++. |..+ ...+.+.++|.|..+.|+.+.|.++|+++++++|++......
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~--P~Y~----~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALAD--PAYG----EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhC--CCCC----CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 7789999999999999999999999987 7665 455899999999999999999999999999999999987766
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+.+
T Consensus 179 ~a~ 181 (250)
T COG3063 179 LAR 181 (250)
T ss_pred HHH
Confidence 654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.5e-16 Score=157.29 Aligned_cols=159 Identities=20% Similarity=0.165 Sum_probs=142.0
Q ss_pred hccCccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 359 ~~~~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
.+++......+.+..++|-.|+.+|+.|-|+..|+++++.+|+.++++.++|.++-..|+..||+++|.+|+++ +
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-----~ 350 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-----C 350 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-----C
Confidence 33443333355556689999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
|+++ + +.++||.++.++|+.++|...|+++++.. |... .++.+||.+|.++|++++|+.+|++++
T Consensus 351 p~ha-d------am~NLgni~~E~~~~e~A~~ly~~al~v~-p~~a-------aa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 351 PNHA-D------AMNNLGNIYREQGKIEEATRLYLKALEVF-PEFA-------AAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred CccH-H------HHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhh-------hhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 9888 3 78899999999999999999999999998 8877 899999999999999999999999999
Q ss_pred HcCCCcHHHHHHHHhhHHH
Q 008887 519 AHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 519 ~~~p~~~~~~~~l~~~~~~ 537 (550)
+++|.+.++..++..-..+
T Consensus 416 rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred hcCchHHHHHHhcchHHHH
Confidence 9999999999887764333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=122.94 Aligned_cols=125 Identities=16% Similarity=0.122 Sum_probs=113.6
Q ss_pred ChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHH
Q 008887 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWE 466 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~ 466 (550)
--+.+++++++.+|++ ++.+|.++.+.|++++|.++|++++.. +|.+. .+++++|.++...|+++
T Consensus 11 ~~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 11 IPEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSW-------RAHIALAGTWMMLKEYT 75 (144)
T ss_pred CHHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-------HHHHHHHHHHHHHhhHH
Confidence 3568899999999885 667899999999999999999999999 88876 37889999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 467 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 467 eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+|+..|+++++.+ |+++ .+++++|.++..+|++++|+..|+++++++|++.+++.....+
T Consensus 76 ~A~~~y~~Al~l~-p~~~-------~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 76 TAINFYGHALMLD-ASHP-------EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHHHhcC-CCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999998 9888 9999999999999999999999999999999999988777663
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.6e-13 Score=132.74 Aligned_cols=152 Identities=22% Similarity=0.201 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.++++|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|++.|++++++ +|++. .
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~-~---- 133 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN-Y---- 133 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-H----
Confidence 3446677777777777777777777777777777777777777777777777777777777777 66665 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccc---------c--------------------------------
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS---------K-------------------------------- 487 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~---------~-------------------------------- 487 (550)
++.++|.++...|++++|++.|+++++.+ |+++.. .
T Consensus 134 --a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg 210 (296)
T PRK11189 134 --AYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLG 210 (296)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHcc
Confidence 66677777777777777777777777765 554300 0
Q ss_pred ----------------------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHh
Q 008887 488 ----------------------AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP-QYNELLEQLEN 533 (550)
Q Consensus 488 ----------------------~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p-~~~~~~~~l~~ 533 (550)
++..++|+++|.++.+.|++++|+.+|+++++.+| ++.+++..+-+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e 279 (296)
T PRK11189 211 KISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLE 279 (296)
T ss_pred CCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 00235789999999999999999999999999996 77776654433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=135.43 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=141.3
Q ss_pred cCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 364 ~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++..-|+..+-+|..|-..++.++|+.+|++||+++|....+|..+|.-|..+++...|++.|++|+++ +|.+-
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-----~p~Dy- 398 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-----NPRDY- 398 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-----CchhH-
Confidence 444456666678889999999999999999999999999999999999999999999999999999999 88776
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.+||.+|.+|.-.+-..=|+-+|++|.+.. |.|. ..|..||+||.+.++.++|+.+|++++.....
T Consensus 399 ------RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDs-------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 399 ------RAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDS-------RLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred ------HHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCch-------HHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 499999999999999999999999999998 9999 99999999999999999999999999999888
Q ss_pred cHHHHHHHHhhHHHH
Q 008887 524 YNELLEQLENNDEEF 538 (550)
Q Consensus 524 ~~~~~~~l~~~~~~~ 538 (550)
...+...+.+..++.
T Consensus 465 e~~~l~~LakLye~l 479 (559)
T KOG1155|consen 465 EGSALVRLAKLYEEL 479 (559)
T ss_pred chHHHHHHHHHHHHH
Confidence 777777777755544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=144.24 Aligned_cols=134 Identities=18% Similarity=0.147 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|.+. .
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~-~------ 434 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFI-F------ 434 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCH-H------
Confidence 33444444444455555555555555555554555555555555555555555555555444 44333 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
++.++|.++..+|++++|+..|+++++.. |+++ .++..+|.++...|++++|++.|+++++++|++
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAP-------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 33344555555555555555555554444 4444 444455555555555555555555555554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=122.62 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=117.3
Q ss_pred cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHH-H
Q 008887 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC-I 460 (550)
Q Consensus 382 ~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~-~ 460 (550)
.++.++++..++++++.+|++.++|..+|.+|...|++++|+.+|++++++ +|+++ . .+..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~-~------~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENA-E------LYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-H------HHHHHHHHHHH
Confidence 445678899999999999999999999999999999999999999999999 88887 3 677889875 6
Q ss_pred HhcC--HHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 461 RQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 461 ~~g~--~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
..|+ +++|.+.++++++.+ |++. .++..+|.++.+.|++++|+.+|+++++.+|.+.+-...++
T Consensus 120 ~~g~~~~~~A~~~l~~al~~d-P~~~-------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALD-ANEV-------TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhC-CCCh-------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 7777 599999999999998 9888 99999999999999999999999999999987766555553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=120.56 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=131.6
Q ss_pred cCccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 361 ~~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
++..+.-+..++..+|..|...|+.+.|.+.|++|++++|++.+++++.|..++.+|++++|.+.|++|+.. |.
T Consensus 61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~ 134 (250)
T COG3063 61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PA 134 (250)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CC
Confidence 333343466777899999999999999999999999999999999999999999999999999999999765 55
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+... ..+-|+|.|..+.|+.+.|.++|+++++.+ |+.+ .....++..+++.|++.+|..++++....
T Consensus 135 Y~~~s----~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~-------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 135 YGEPS----DTLENLGLCALKAGQFDQAEEYLKRALELD-PQFP-------PALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred CCCcc----hhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCC-------hHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 55333 256689999999999999999999999998 9888 89999999999999999999999998887
Q ss_pred CCCcHHHHH
Q 008887 521 NPQYNELLE 529 (550)
Q Consensus 521 ~p~~~~~~~ 529 (550)
-+...+-+.
T Consensus 203 ~~~~A~sL~ 211 (250)
T COG3063 203 GGAQAESLL 211 (250)
T ss_pred ccccHHHHH
Confidence 665555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.4e-13 Score=117.72 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=108.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++|+..+..|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++++ +|.++ .
T Consensus 22 ~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~-~-- 93 (144)
T PRK15359 22 VDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHP-E-- 93 (144)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc-H--
Confidence 578888899999999999999999999999999999999999999999999999999999999999 89887 3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~ 503 (550)
+++++|.++...|++++|++.|+++++.. |+++ ..+..+|.+...
T Consensus 94 ----a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~-------~~~~~~~~~~~~ 138 (144)
T PRK15359 94 ----PVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADA-------SWSEIRQNAQIM 138 (144)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHH
Confidence 88899999999999999999999999998 9888 788887777654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-13 Score=142.58 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=119.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
..+|+.++.+|..|--+++++.|+++|++|+++||++.-+|-.+|.-+....++|+|..+|++|+.. +|++-
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-----~~rhY--- 489 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-----DPRHY--- 489 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-----Cchhh---
Confidence 3578888888888888899999999999999998888888888888888888888888888888888 66654
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.|||.+|.+|.++++++.|.-.|++|++++ |.+. .....+|..+.+.|+.|+|++.|++|+.++|.++
T Consensus 490 ----nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~ns-------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 490 ----NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNS-------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred ----HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccch-------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 388888888888888888888888888887 8776 7788888888888888888888888888887766
Q ss_pred HHH
Q 008887 526 ELL 528 (550)
Q Consensus 526 ~~~ 528 (550)
-..
T Consensus 558 l~~ 560 (638)
T KOG1126|consen 558 LCK 560 (638)
T ss_pred hhH
Confidence 433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-12 Score=112.58 Aligned_cols=124 Identities=20% Similarity=0.241 Sum_probs=114.8
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 008887 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (550)
Q Consensus 390 ~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~ 469 (550)
++++++++.+|++..+.+.+|..+...|++++|.+.+++++.. +|.++ .+++++|.++...|++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~-------~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNS-------RYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcH-------HHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999 78776 37889999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 470 ~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++++++++.+ |+++ ..++.+|.+|...|++++|...++++++.+|++........+
T Consensus 72 ~~~~~~~~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 127 (135)
T TIGR02552 72 DAYALAAALD-PDDP-------RPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKER 127 (135)
T ss_pred HHHHHHHhcC-CCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999999998 8887 999999999999999999999999999999999886665554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.1e-12 Score=119.49 Aligned_cols=141 Identities=26% Similarity=0.284 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
+....+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|++.++++++. +|.+. .
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~-~----- 100 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----NPNNG-D----- 100 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH-H-----
Confidence 344455555555566666666666665555555555555566666666666666666555555 44433 1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
++.++|.++...|++++|++.++++++.. ... .....+..+|.++...|++++|.+.++++++.+|++...+
T Consensus 101 -~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (234)
T TIGR02521 101 -VLNNYGTFLCQQGKYEQAMQQFEQAIEDP--LYP----QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESL 172 (234)
T ss_pred -HHHHHHHHHHHcccHHHHHHHHHHHHhcc--ccc----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHH
Confidence 33445555555555555555555554431 100 1113444445555555555555555555555444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-12 Score=139.46 Aligned_cols=152 Identities=15% Similarity=0.078 Sum_probs=131.1
Q ss_pred CccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 362 ~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+..+.-+++.+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.++++++++ +|.+
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~P~~ 405 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-----DPTR 405 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC
Confidence 33333477788899999999999999999999999999999999999999999999999999999999999 8887
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+. +++.++.+++..|++++|++.++++++..+|+++ .++..+|.+|...|++++|++.++++....
T Consensus 406 ~~-------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~-------~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 406 AA-------AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNP-------ILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred hh-------hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCH-------HHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 62 3334566677799999999999999877535666 789999999999999999999999998888
Q ss_pred CCcHHHHHHHH
Q 008887 522 PQYNELLEQLE 532 (550)
Q Consensus 522 p~~~~~~~~l~ 532 (550)
|+...+...+.
T Consensus 472 ~~~~~~~~~l~ 482 (553)
T PRK12370 472 ITGLIAVNLLY 482 (553)
T ss_pred chhHHHHHHHH
Confidence 88776666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=142.65 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=135.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
....+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++. +|.++ .
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~-~--- 400 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDP-D--- 400 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-H---
Confidence 34456689999999999999999999999999999999999999999999999999999999999 88877 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
+++.+|.++...|++++|+++|+++++++ |++. .++..+|.++.++|++++|+..++++++.+|++...
T Consensus 401 ---~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~ 469 (615)
T TIGR00990 401 ---IYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI-------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469 (615)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 78889999999999999999999999998 8777 899999999999999999999999999999999887
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+..+
T Consensus 470 ~~~lg~~ 476 (615)
T TIGR00990 470 YNYYGEL 476 (615)
T ss_pred HHHHHHH
Confidence 7766554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=117.09 Aligned_cols=147 Identities=22% Similarity=0.253 Sum_probs=127.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.....+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|++.++++++. .+.....
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~--- 135 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-----PLYPQPA--- 135 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----cccccch---
Confidence 34466689999999999999999999999999999999999999999999999999999999876 2211111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
..++.+|.++...|++++|.+.++++++.. |++. ..+..+|.++...|++++|...++++++..|++...
T Consensus 136 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 136 --RSLENAGLCALKAGDFDKAEKYLTRALQID-PQRP-------ESLLELAELYYLRGQYKDARAYLERYQQTYNQTAES 205 (234)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 266779999999999999999999999997 8776 889999999999999999999999999998887765
Q ss_pred HHHHH
Q 008887 528 LEQLE 532 (550)
Q Consensus 528 ~~~l~ 532 (550)
+....
T Consensus 206 ~~~~~ 210 (234)
T TIGR02521 206 LWLGI 210 (234)
T ss_pred HHHHH
Confidence 54443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=135.66 Aligned_cols=203 Identities=17% Similarity=0.182 Sum_probs=97.7
Q ss_pred HHHHhhhhHHHHHHHHHhcCHHHHhhhCCCCCCCCCCCCCCccccccCcCCCC--chhhccCccCCCChHHHHHHHHHHH
Q 008887 303 LVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLES--PAKQLKISVENLTPKELIALSVKFL 380 (550)
Q Consensus 303 ~lYw~~s~~~~~~q~~~~~~p~~r~~l~i~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~la~~~~ 380 (550)
.-|.+.+|+|++--..-.....+.+++.+.+.-.=+..-..-+. ......+. .....++..+...-.+++.+|..|+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~-~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHES-IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChh-hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 35667788888755555555556666666432111000000000 00001111 1112223222223334445555555
Q ss_pred HcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~ 460 (550)
++++++.|+-+|++|++++|.+......+|.++.+.|+.++|+++|++|+.+ +|.++ ...+..|.++.
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~kn~-------l~~~~~~~il~ 568 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPKNP-------LCKYHRASILF 568 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCCCc-------hhHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555 55544 13444555555
Q ss_pred HhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 461 RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 461 ~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
..+++++|+..+++.-+.- |++. .+++.+|.+|.++|+.+.|+..|..+..++|.-..
T Consensus 569 ~~~~~~eal~~LEeLk~~v-P~es-------~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELV-PQES-------SVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhcchHHHHHHHHHHHHhC-cchH-------HHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5555555555555555444 4444 55555555555555555555555555555554443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.8e-12 Score=136.32 Aligned_cols=146 Identities=14% Similarity=0.024 Sum_probs=125.3
Q ss_pred ChHHHHHHHHHHHHc---------CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 368 TPKELIALSVKFLSK---------GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 368 ~~~~l~~la~~~~~~---------g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
++..+..+|..+... +++++|+..++++++.+|+++.++..+|.++...|++++|+++|++++++ +
T Consensus 294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~ 368 (553)
T PRK12370 294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-----S 368 (553)
T ss_pred cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C
Confidence 455566777665533 34789999999999999999999999999999999999999999999999 8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
|+++ . +++++|.++...|++++|++.++++++++ |.++ ..+..++.++...|++++|++.+++++
T Consensus 369 P~~~-~------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~-------~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 369 PISA-D------IKYYYGWNLFMAGQLEEALQTINECLKLD-PTRA-------AAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred CCCH-H------HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCh-------hhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8887 3 77889999999999999999999999998 8876 566667777888999999999999999
Q ss_pred HcC-CCcHHHHHHHHh
Q 008887 519 AHN-PQYNELLEQLEN 533 (550)
Q Consensus 519 ~~~-p~~~~~~~~l~~ 533 (550)
+.+ |++...+..+..
T Consensus 434 ~~~~p~~~~~~~~la~ 449 (553)
T PRK12370 434 SQHLQDNPILLSMQVM 449 (553)
T ss_pred HhccccCHHHHHHHHH
Confidence 875 777776665544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=136.48 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=126.7
Q ss_pred ChHHHHHHHHHHHHcCCCCC----hHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKER----PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~----A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++.....+|..+...|++++ |+..|+++++.+|++..++..+|.++...|++++|+.++++++++ +|.++
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~- 318 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP- 318 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-
Confidence 56677799999999999996 899999999999999999999999999999999999999999999 88877
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
. ++.++|.++.+.|++++|++.|+++++.. |++. ..+..+|.++...|++++|++.|+++++.+|+
T Consensus 319 ~------a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~-------~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 319 Y------VRAMYARALRQVGQYTAASDEFVQLAREK-GVTS-------KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred H------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccch-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 3 67789999999999999999999999987 8665 66777899999999999999999999999988
Q ss_pred cH
Q 008887 524 YN 525 (550)
Q Consensus 524 ~~ 525 (550)
+.
T Consensus 385 ~~ 386 (656)
T PRK15174 385 HL 386 (656)
T ss_pred hc
Confidence 64
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-11 Score=134.02 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=130.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|......|.+++|+.+++.+++..|++..++.+++.++.+.+++++|+..++++++. +|++.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-----~p~~~----- 154 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-----GSSSA----- 154 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-----CCCCH-----
Confidence 57788899999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.+++.+|.++.+.|++++|+++|++++..+ |+++ .++..+|.++...|+.++|...|+++++...+-...
T Consensus 155 --~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~-------~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 155 --REILLEAKSWDEIGQSEQADACFERLSRQH-PEFE-------NGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred --HHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 377789999999999999999999999976 8888 999999999999999999999999999987655543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=139.86 Aligned_cols=137 Identities=20% Similarity=0.163 Sum_probs=121.4
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.++......|++++|+..|+++++.+|+ ..++.++|.++.+.|++++|+++|++++++ +|+++ . ++.
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~-~------a~~ 647 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNS-N------YQA 647 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-H------HHH
Confidence 4444555569999999999999999996 899999999999999999999999999999 88887 3 778
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
++|.++...|++++|++.|+++++.+ |+++ .++.++|.++...|++++|+.+|+++++++|+........
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~-------~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~ 717 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGL-PDDP-------ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLT 717 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhh
Confidence 89999999999999999999999998 8888 9999999999999999999999999999999887655433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-11 Score=114.85 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=130.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..++.++.+|..++..|++++|+..++++++.+|+++ .+++.+|.++...|++++|+..|+++++. +|+++.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~ 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-----HPNHPD 105 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCc
Confidence 4777889999999999999999999999999999876 67899999999999999999999999999 887774
Q ss_pred hHHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHhcCCCCCCcccccc----------chhHHHHHHHHHHhcC
Q 008887 444 AIDLLIVASQWSGVACIRQ--------EKWEEGIAHLERIGNLKEPEEPKSKAH----------YYDGLVVLASALCNVG 505 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~--------g~~~eA~~~~~~al~~~~p~~~~~~~~----------~~~~~~~La~~~~~~g 505 (550)
.. .+++.+|.++... |++++|++.++++++.. |++...... .......+|.+|.+.|
T Consensus 106 ~~----~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 106 AD----YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred hH----HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 32 2667899999876 89999999999999997 876522110 0112347889999999
Q ss_pred CHHHHHHHHHHHHHcCCCc---HHHHHHHHhh
Q 008887 506 RNAEAEKYLRLAAAHNPQY---NELLEQLENN 534 (550)
Q Consensus 506 ~~~eA~~~l~~al~~~p~~---~~~~~~l~~~ 534 (550)
++++|+..++++++..|+. .+++..+..+
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEA 212 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 9999999999999997765 3555555543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=119.73 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
...++.-+|-.|...++...|++.|++|++.+|.+.++|+.+|++|.-.+...=|+-+|++|++. -|.++ .
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDs-R--- 433 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDS-R--- 433 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCch-H---
Confidence 33455689999999999999999999999999999999999999999999999999999999999 78887 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.|..||.||.+.++.++|+++|.+++... .... .++..||.+|.++++..+|..+|++.++
T Consensus 434 ---lw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~-------~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 434 ---LWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG-------SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch-------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 78889999999999999999999999997 6666 8999999999999999999999999888
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=115.70 Aligned_cols=111 Identities=20% Similarity=0.219 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+-+..-|.-+++.++|++|+..|.+||++ +|+++ . .|-+.+.+|.++|.++.|++.++.++.++ |.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l-----~P~nA-V------yycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~- 147 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIEL-----DPTNA-V------YYCNRAAAYSKLGEYEDAVKDCESALSID-PH- 147 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CCCcc-h------HHHHHHHHHHHhcchHHHHHHHHHHHhcC-hH-
Confidence 33455666677777777777777777777 66666 2 45566777777777777777777777776 53
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+..+|..||.+|..+|++++|++.|+++|+++|++..++..|+.+
T Consensus 148 ------yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 148 ------YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred ------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 337777777777777777777777777777777777777776663
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.3e-11 Score=134.99 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+...+.+|..+...|++++|+.+|+++++.+|++...+..++......|++++|+..|+++++. +|+ . .
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-----~P~-~-~---- 610 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-----APS-A-N---- 610 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCC-H-H----
Confidence 4456688888999999999999999999999999888888888788889999999999999999 774 3 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
++.++|.++.+.|++++|++.|+++++.+ |+++ .++.++|.++.+.|++++|++.|+++++.+|++.+++
T Consensus 611 --a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~-------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 611 --AYVARATIYRQRHNVPAAVSDLRAALELE-PNNS-------NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 77889999999999999999999999998 9888 9999999999999999999999999999999999988
Q ss_pred HHHHhhH
Q 008887 529 EQLENND 535 (550)
Q Consensus 529 ~~l~~~~ 535 (550)
.++..+.
T Consensus 681 ~nLA~al 687 (987)
T PRK09782 681 RQLAYVN 687 (987)
T ss_pred HHHHHHH
Confidence 8777643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=102.11 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=97.9
Q ss_pred HhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 008887 396 LNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (550)
Q Consensus 396 L~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~ 474 (550)
...+ ++..+..+.+|..+++.|++++|...|+-+... +|.+. ..|++||.|+..+|++++|++.|.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~-------~y~~gLG~~~Q~~g~~~~AI~aY~~ 94 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-----DAWSF-------DYWFRLGECCQAQKHWGEAIYAYGR 94 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccH-------HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4466 778889999999999999999999999999888 77776 3788999999999999999999999
Q ss_pred HhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 475 IGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 475 al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
++.++ |+++ .++.++|.|+...|+.++|++.|+.+++...+.++
T Consensus 95 A~~L~-~ddp-------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 95 AAQIK-IDAP-------QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHhcC-CCCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99998 9888 99999999999999999999999999998744443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-11 Score=114.83 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=152.1
Q ss_pred hhHHHHHHHHHhcCH--HHHhhhCCCCCCCCCCCCC-------------CccccccCcCCCCchhhccCccCCCChHHHH
Q 008887 309 NSSFSIVQQLALKHP--ASRTMLGLPDKVVPAAARK-------------PEEIDTLETTLESPAKQLKISVENLTPKELI 373 (550)
Q Consensus 309 s~~~~~~q~~~~~~p--~~r~~l~i~~~~~~~~~~~-------------s~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 373 (550)
+..++-+..++.++| +++.++.+-...+.+.+.. ...++++|+-+.+|+....- ..-++.
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~q-----r~lAl~ 111 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQ-----RLLALQ 111 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHH-----HHHHHH
Confidence 345555666666665 5666666655544433321 12466677777777653221 123556
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
++|..|+..|-+|+|+..|....+....-..++..|..+|....+|++|++..++...+ .+.+...+..++.+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~---~~q~~~~eIAqfyC---- 184 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL---GGQTYRVEIAQFYC---- 184 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc---CCccchhHHHHHHH----
Confidence 99999999999999999999988776667789999999999999999999999988888 22223333333333
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.++..+....+.++|+..+.++++.+ |++. .+-..+|+++...|++++|++.++++++.||++..
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~-~~cv-------RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQAD-KKCV-------RASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhC-ccce-------ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 48888999999999999999999998 9999 89999999999999999999999999999988754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.2e-11 Score=139.02 Aligned_cols=147 Identities=22% Similarity=0.258 Sum_probs=128.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH---HHHH-
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI---DLLI- 449 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~---~~l~- 449 (550)
..|..+...|++++|+..|+++++.+|+++.++..+|.+|.+.|++++|+++|+++++. +|.+.... ..+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-----~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL-----DPHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCccchhHHHHHHHh
Confidence 45888999999999999999999999999999999999999999999999999999999 77665211 0110
Q ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 450 ---VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 450 ---~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.....+|.++.+.|++++|++.|+++++.+ |++. .++..+|.+|...|++++|++.|+++++.+|++..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~-------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDS-------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 122346888999999999999999999998 8887 89999999999999999999999999999999988
Q ss_pred HHHHHHh
Q 008887 527 LLEQLEN 533 (550)
Q Consensus 527 ~~~~l~~ 533 (550)
++..+..
T Consensus 421 a~~~L~~ 427 (1157)
T PRK11447 421 AVRGLAN 427 (1157)
T ss_pred HHHHHHH
Confidence 7766544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=129.95 Aligned_cols=136 Identities=20% Similarity=0.123 Sum_probs=125.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEE----AVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~e----A~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.++..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++ |+..|+++++. +|++. .
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~-~----- 285 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNV-R----- 285 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCH-H-----
Confidence 567788999999999999999999999999999999999999999996 89999999999 88776 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
++..+|.++..+|++++|+..++++++.. |+++ .++..+|.+|.+.|++++|++.|+++++.+|++.....
T Consensus 286 -a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~-------~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 286 -IVTLYADALIRTGQNEKAIPLLQQSLATH-PDLP-------YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 77889999999999999999999999998 8887 89999999999999999999999999999999866443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.5e-11 Score=122.14 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=133.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
+-+|..|...+++..|.+.|.+|+.+.|.++-.+..+|.+.+..+.|.+|..+|+++++..+.. ++... ...-.+
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~-~~e~~----~w~p~~ 458 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV-LNEKI----FWEPTL 458 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc-ccccc----chhHHH
Confidence 4789999999999999999999999999999999999999999999999999999999653211 11111 111257
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
.++|.++.+++++++|+.++++++... |.+. .++..+|-+|..+|+.+.|+++|.++|.++|++.-....|.
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~-------~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLLS-PKDA-------STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHcC-CCch-------hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 789999999999999999999999998 9888 99999999999999999999999999999999988777777
Q ss_pred hhHHH
Q 008887 533 NNDEE 537 (550)
Q Consensus 533 ~~~~~ 537 (550)
.+.++
T Consensus 531 ~aie~ 535 (611)
T KOG1173|consen 531 LAIED 535 (611)
T ss_pred HHHHh
Confidence 66555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=115.21 Aligned_cols=152 Identities=24% Similarity=0.247 Sum_probs=139.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
..+...+..|..++..|++++|++.++..++..|+|+..+...+.++...++.++|.+.+++++.+ +|..+ .
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----~P~~~-~-- 375 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----DPNSP-L-- 375 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcc-H--
Confidence 356677899999999999999999999999999999999999999999999999999999999999 78775 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.++++|.++.+.|++++|+..+.+.+..+ |+++ ..|..||++|.++|+..+|...+.+...++.+..+
T Consensus 376 ----l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp-------~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 376 ----LQLNLAQALLKGGKPQEAIRILNRYLFND-PEDP-------NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ 443 (484)
T ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCc-------hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHH
Confidence 77899999999999999999999999997 9999 99999999999999999999999999999999988
Q ss_pred HHHHHHhhHHHH
Q 008887 527 LLEQLENNDEEF 538 (550)
Q Consensus 527 ~~~~l~~~~~~~ 538 (550)
+...+..+.+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 888777754443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=119.80 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=138.4
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------------INALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 434 (550)
.+.++++-.|.+++..++.+.|+.+|+++|+.+|++ ...+...|+-.++.|.+.+|.++|.+++.+
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-- 278 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-- 278 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC--
Confidence 466788888999999999999999999999999875 345567799999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008887 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYL 514 (550)
Q Consensus 435 ~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l 514 (550)
+|.+... ....|.++|.+..+.|+.++|+..++.+++++ +... .++...|.|+..++++++|++.|
T Consensus 279 ---dP~n~~~---naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syi-------kall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 279 ---DPSNKKT---NAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYI-------KALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred ---Cccccch---hHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776532 33467899999999999999999999999998 7555 99999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHhhHHHHHhhhhhccccCC
Q 008887 515 RLAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY 550 (550)
Q Consensus 515 ~~al~~~p~~~~~~~~l~~~~~~~~~~l~~~~r~~~ 550 (550)
+++.+...+ .+.+..+.++ ...|..++|+||
T Consensus 345 ~~a~q~~~s-~e~r~~l~~A----~~aLkkSkRkd~ 375 (486)
T KOG0550|consen 345 EKAMQLEKD-CEIRRTLREA----QLALKKSKRKDW 375 (486)
T ss_pred HHHHhhccc-cchHHHHHHH----HHHHHHhhhhhH
Confidence 999998877 5555555552 334677778887
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=116.45 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=110.2
Q ss_pred CCCChHHHHHHHHhhC---C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHH
Q 008887 384 DKERPIPLLQLALNKE---P-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (550)
Q Consensus 384 ~~~~A~~~~~~aL~~~---p-~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~ 459 (550)
+.+.++..+.+++... | ..+..++.+|.+|...|++++|+..|++++++ +|+++ .+++++|.++
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~~~-------~a~~~lg~~~ 108 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-----RPDMA-------DAYNYLGIYL 108 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHH
Confidence 5566777777888633 3 34778999999999999999999999999999 88887 3888999999
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 460 IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 460 ~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
...|++++|++.|+++++++ |++. .++.++|.++...|++++|++.++++++.+|++.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~-P~~~-------~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELD-PTYN-------YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999998 9887 8999999999999999999999999999999986
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-11 Score=112.80 Aligned_cols=120 Identities=21% Similarity=0.194 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.+-..|..++..++|++|+..|.+||+++|.++..|.+.+.+|.+.|.++.|++..+.|+.+ +|.+.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----Dp~ys------ 149 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----DPHYS------ 149 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----ChHHH------
Confidence 3455589999999999999999999999999999999999999999999999999999999999 66554
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA 508 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~ 508 (550)
.+|..||.+|..+|++++|++.|+++++++ |++. ....+|..+-.+.++.+
T Consensus 150 -kay~RLG~A~~~~gk~~~A~~aykKaLeld-P~Ne-------~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 150 -KAYGRLGLAYLALGKYEEAIEAYKKALELD-PDNE-------SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -HHHHHHHHHHHccCcHHHHHHHHHhhhccC-CCcH-------HHHHHHHHHHHHhcCCC
Confidence 488899999999999999999999999998 9887 77777777766666555
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-10 Score=134.19 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=126.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH----
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI---- 449 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~---- 449 (550)
..|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|+++|+++++. +|.+......+.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-----DPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999 787663221111
Q ss_pred -------------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHH
Q 008887 450 -------------------------------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 498 (550)
Q Consensus 450 -------------------------------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La 498 (550)
..+..+|.++...|++++|++.|+++++.+ |+++ .+++.+|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~-------~~~~~LA 502 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSV-------WLTYRLA 502 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHH
Confidence 122346777888999999999999999998 9888 8999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 499 SALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 499 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
.+|.+.|++++|+..++++++.+|++.+.+..+
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999999999999998765543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-10 Score=117.40 Aligned_cols=139 Identities=15% Similarity=0.096 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++. +|.+... ....
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~--~~~~ 181 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-----GGDSLRV--EIAH 181 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-----cCCcchH--HHHH
Confidence 34567777777777777777777777777777777777777777777777777777777766 4443211 1111
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.+..+|.++.++|++++|+++|+++++.. |++. .+++.+|.+|.+.|++++|.+.++++++.+|++
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD-PQCV-------RASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 34456777777777777777777777765 6555 667777777777777777777777777766654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=120.16 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+.++.|..+++.|+..+|.-+|+.+++.+|++.++|..||.+....++-..|+..+++|+++ +|++- +
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-----dP~Nl-------e 354 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL-----DPTNL-------E 354 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-----CCccH-------H
Confidence 34566666666666666666666666666666666666666666666666666666666666 55554 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
+...||++|...|.-.+|++++++-+
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33344455554444444554444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-10 Score=109.04 Aligned_cols=143 Identities=18% Similarity=0.244 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHHhhhcCC
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQK--------GLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~---a~~~lg~~~~~~--------g~~~eA~~~~~~al~l~~~~~~ 438 (550)
+..+.+|..+...|++++|++.|+++++.+|++.. +++.+|.++... |++++|++.++++++. +
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~ 145 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----Y 145 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----C
Confidence 46679999999999999999999999999998876 789999999987 8899999999999999 8
Q ss_pred CCChhhHHHHH----------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHH
Q 008887 439 PTEPEAIDLLI----------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA 508 (550)
Q Consensus 439 p~~~~~~~~l~----------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~ 508 (550)
|.+......+. .....+|..+...|++++|+..++++++.. |+.+ ...++++.+|.++...|+++
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-PDTP----ATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-CCCc----chHHHHHHHHHHHHHcCCHH
Confidence 88764332221 122467889999999999999999999987 7654 45589999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 008887 509 EAEKYLRLAAAHNP 522 (550)
Q Consensus 509 eA~~~l~~al~~~p 522 (550)
+|..+++......|
T Consensus 221 ~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 221 LAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHhhCC
Confidence 99998887766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-10 Score=118.14 Aligned_cols=141 Identities=24% Similarity=0.253 Sum_probs=124.1
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
...+|..+...|++++|++.|+++++.+|++..+++.+|.++.+.|++++|++.++++++. +|.+.. .+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~------~~ 251 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYLS------EV 251 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhHH------HH
Confidence 4478889999999999999999999999999999999999999999999999999999988 554431 25
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
+..++.++...|++++|++.++++++.. |+.. .+..++.++.+.|++++|...++++++.+|++..+...+
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~--------~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY-PGAD--------LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCch--------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 6679999999999999999999999986 7543 448899999999999999999999999999998766444
Q ss_pred H
Q 008887 532 E 532 (550)
Q Consensus 532 ~ 532 (550)
.
T Consensus 323 ~ 323 (389)
T PRK11788 323 D 323 (389)
T ss_pred H
Confidence 3
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=116.97 Aligned_cols=132 Identities=22% Similarity=0.215 Sum_probs=125.7
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
++.+|..|....+.++-.+.|.+|.+++|.++.+|+..|++++-.+++++|+..|++++++ +|.+. .+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-----~pe~~-------~~ 430 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-----DPENA-------YA 430 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-----Chhhh-------HH
Confidence 6689999999999999999999999999999999999999999999999999999999999 67665 37
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
+..++.+.+++++++++...|+++++.. |+++ +++...|+++..++++++|.+.|..++++.|.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~-------Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKF-PNCP-------EVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCc-------hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 7889999999999999999999999999 9999 99999999999999999999999999999887
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=100.71 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+-+.++.+|..++..|++++|+..|+.+...+|.+...|++||.++..+|+|++|++.|.+++.+ +|+++ .
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----~~ddp-~--- 104 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----KIDAP-Q--- 104 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc-h---
Confidence 44577899999999999999999999999999999999999999999999999999999999999 89888 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.++++|.|+...|+.++|.+.|+.++...
T Consensus 105 ---~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 105 ---APWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999986
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-11 Score=118.24 Aligned_cols=132 Identities=26% Similarity=0.345 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+...|..+...|+.++|++.|+++++.+|++..+...++.++...|+++++.+.++...+. .|.++ .
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-----~~~~~-~--- 215 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-----APDDP-D--- 215 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC-C---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-----CcCHH-H---
Confidence 56677799999999999999999999999999999999999999999999999988888888777 55555 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+..+|.++...|++++|+.+|+++++.. |+|+ ..+..+|.++.+.|+.++|.++++++++
T Consensus 216 ---~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~-------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 216 ---LWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP-------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ---HCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H-------HHHHHHHHHHT-----------------
T ss_pred ---HHHHHHHHhcccccccccccccccccccc-cccc-------cccccccccccccccccccccccccccc
Confidence 45578999999999999999999999987 9998 9999999999999999999999998875
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=126.01 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=122.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh----
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE---- 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~---- 443 (550)
+++.++..|..++..|++++|+..++++++.+|+++.+++.+|.+|...|++++|+..++++++. .|.+..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~ 95 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSL-----GYPKNQVLPL 95 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCChhhhHHH
Confidence 44567788999999999999999999999999999999999999999999999999999998876 443221
Q ss_pred ------------------------hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHH
Q 008887 444 ------------------------AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 499 (550)
Q Consensus 444 ------------------------~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~ 499 (550)
........+..+|.++...|++++|++.|+++++.+ |++. .++..+|.
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-------~~~~~la~ 167 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSL-------YAKLGLAQ 167 (899)
T ss_pred HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCh-------hhHHHHHH
Confidence 011112356678899999999999999999999887 7776 77888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 500 ALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 500 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++...|++++|.+.++++++.+|++..++..+..
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 168 LALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 8888888888888888888888877766555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-10 Score=115.92 Aligned_cols=114 Identities=21% Similarity=0.269 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.+...|..++..|++++|+++|+++++.+|++..+++.+|.+|...|++++|+..+++++++ +|.++ .
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~-------~ 71 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-----DPSLA-------K 71 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCH-------H
Confidence 56788999999999999999999999999999999999999999999999999999999999 88776 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
+++.+|.++...|++++|+..|+++++++ |++. .+...++.|..++
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~-P~~~-------~~~~~l~~~~~kl 117 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLA-PGDS-------RFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHH
Confidence 78899999999999999999999999998 9888 8888888886655
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=113.96 Aligned_cols=151 Identities=24% Similarity=0.284 Sum_probs=117.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
++..+......+...++++++.+.++++.... ++++..+..+|.++.+.|++++|+++|+++++. +|+++ .
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~-~- 181 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDP-D- 181 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-H-H-
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-H-
Confidence 34444466677899999999999999987654 678899999999999999999999999999999 88877 2
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
+...++..+...|+++++.+.+++..+.. |+++ ..+..+|.+|..+|++++|...++++++.+|++.
T Consensus 182 -----~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~-------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 182 -----ARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP-------DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp -----HHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC-------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred -----HHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH-------HHHHHHHHHhcccccccccccccccccccccccc
Confidence 56678999999999999999988887776 7777 7889999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHH
Q 008887 526 ELLEQLENNDEEF 538 (550)
Q Consensus 526 ~~~~~l~~~~~~~ 538 (550)
..+..+..+....
T Consensus 249 ~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 249 LWLLAYADALEQA 261 (280)
T ss_dssp HHHHHHHHHHT--
T ss_pred ccccccccccccc
Confidence 9888887754443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=124.89 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.....++..+...|++++|++.++++++.+|++..+++.+|.+|...|++++|+++|+++++. +|.++ .
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~-~----- 805 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-----APDNA-V----- 805 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-----CCCCH-H-----
Confidence 445567777788888888888888888888888888888888888888888888888888888 66665 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
++.++|..+...|+ ++|+++++++++.. |+++ ..+..+|.++...|++++|...++++++.+|.+.+...
T Consensus 806 -~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 806 -VLNNLAWLYLELKD-PRALEYAEKALKLA-PNIP-------AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred -HHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 66678888888888 77888888888886 7776 78888999999999999999999999999998888776
Q ss_pred HHHhh
Q 008887 530 QLENN 534 (550)
Q Consensus 530 ~l~~~ 534 (550)
.+..+
T Consensus 876 ~l~~~ 880 (899)
T TIGR02917 876 HLALA 880 (899)
T ss_pred HHHHH
Confidence 66554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=103.49 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=96.2
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHhhhcCCCCC
Q 008887 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQ-LQKGL--LEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 365 ~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~-~~~g~--~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+.-+++.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++ ...|+ +++|.+.++++++. +|++
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-----dP~~ 143 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-----DANE 143 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----CCCC
Confidence 3347888899999999999999999999999999999999999999975 67787 59999999999999 8888
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
. . +++.+|.++.+.|++++|+.+++++++..+|+
T Consensus 144 ~-~------al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 144 V-T------ALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred h-h------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7 3 78899999999999999999999999998443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-09 Score=99.82 Aligned_cols=129 Identities=20% Similarity=0.156 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+.+.+..+|......|++.+|+..++++...+|++.++|..+|.+|.+.|++++|...|.+++++ .|+++
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p----- 168 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEP----- 168 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCc-----
Confidence 34444468999999999999999999999999999999999999999999999999999999999 77777
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
....|+|..++-.|+++.|..++.++.... +.+. .+..+++.+....|++++|...-.+
T Consensus 169 --~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~-------~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 169 --SIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADS-------RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred --hhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCch-------HHHHHHHHHHhhcCChHHHHhhccc
Confidence 267789999999999999999999988875 6566 8889999999999999999876543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-09 Score=120.86 Aligned_cols=146 Identities=12% Similarity=0.115 Sum_probs=108.1
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+++..+.....+....|+.++|++.++++...+|....++..+|.++...|++++|+++++++++. +|.++ .
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~-~-- 84 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQND-D-- 84 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-H--
Confidence 455566666677777777777777777777777777777777777777778888888777777777 66665 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
++..++.++...|++++|++.++++++.. |+++ . +..+|.++...|++++|+..++++++.+|++.+
T Consensus 85 ----a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~-------~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~ 151 (765)
T PRK10049 85 ----YQRGLILTLADAGQYDEALVKAKQLVSGA-PDKA-------N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ 151 (765)
T ss_pred ----HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 45567777777778888888887777776 7666 6 777777777777788888888877777777777
Q ss_pred HHHHHHh
Q 008887 527 LLEQLEN 533 (550)
Q Consensus 527 ~~~~l~~ 533 (550)
++..+..
T Consensus 152 ~~~~la~ 158 (765)
T PRK10049 152 YPTEYVQ 158 (765)
T ss_pred HHHHHHH
Confidence 6555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=101.58 Aligned_cols=119 Identities=25% Similarity=0.287 Sum_probs=112.5
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
.+++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..++++.++ +|++. ++|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d~-------~~~ 137 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----APTDW-------EAW 137 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----CCCCh-------hhh
Confidence 688889999999999999999999999999999999999999999999999999999999 88887 388
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~ 511 (550)
..+|.+|.+.|+.++|...|.+++++. ++++ .+..++|..|.-.||++.|+
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p-------~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELA-PNEP-------SIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhc-cCCc-------hhhhhHHHHHHHcCCHHHHH
Confidence 889999999999999999999999998 9888 99999999999999999886
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.5e-10 Score=116.43 Aligned_cols=144 Identities=19% Similarity=0.159 Sum_probs=121.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+|..|...+++++|+..|++|+.. +|..+.++.+||.+|...|++++|..++++|+++....-...+++.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v- 324 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV- 324 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH-
Confidence 5999999999999999999999984 3555678999999999999999999999999999755333344422
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+.+++..+...+++++|..++++++++.......++......+.+||.+|..+|+++||++.+++++.+.
T Consensus 325 ---~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 325 ---AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ---HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2356679999999999999999999999886322344444677899999999999999999999999999876
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=110.14 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+...|..++..|+|++|+++|++++++ +|.+. . +++++|.++...|++++|+..++++++++ |.+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~-~------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~- 70 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNNA-E------LYADRAQANIKLGNFTEAVADANKAIELD-PSLA- 70 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-H------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH-
Confidence 566789999999999999999999999 88877 3 78899999999999999999999999998 8877
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.+++.+|.+|..+|++++|+..|+++++++|++..+...+...
T Consensus 71 ------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 71 ------KAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred ------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999987777664
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=95.11 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=96.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+....+.+|..+...|++++|.+.+++++..+|++..++..+|.++...|++++|+.+++++++. +|.++ .
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~-~--- 86 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-----DPDDP-R--- 86 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCh-H---
Confidence 45567799999999999999999999999999999999999999999999999999999999999 77776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.++.+|.++...|++++|++.++++++.+ |++.
T Consensus 87 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 119 (135)
T TIGR02552 87 ---PYFHAAECLLALGEPESALKALDLAIEIC-GENP 119 (135)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccc
Confidence 77889999999999999999999999998 7766
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-10 Score=109.74 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
-+...|..+...+++++|+++|+++++.+|.+.++...+|.-|+..++.+-|+.+|++.++. .-.++ +
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~sp-------e 359 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQSP-------E 359 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCCh-------H
Confidence 34488899999999999999999999999999999999999999999999999999999999 55566 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
.+.|+|.|++..+++|-++..|++++... +.++ ...++|+++|.+....||+.-|.++|+-++..++++.+++++
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlsta--t~~~---~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTA--TQPG---QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhc--cCcc---hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence 66789999999999999999999999874 2221 234899999999999999999999999999999999999999
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
|.-
T Consensus 435 Lav 437 (478)
T KOG1129|consen 435 LAV 437 (478)
T ss_pred HHH
Confidence 876
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=114.64 Aligned_cols=146 Identities=23% Similarity=0.144 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
...+|..|..+|+|++|+..+++|++. .|.-......+|.+|...+++++|+..|++|+.+......++++.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 347999999999999999999999997 555566667799999999999999999999999987666777773
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.. .++.+||.+|.++|++++|..++++|+++.+.....++......+..++.++..++++++|..++++++++.
T Consensus 282 va----~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 282 VA----ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HH----HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 32 467789999999999999999999999986444555666778889999999999999999999999998865
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.9e-10 Score=114.63 Aligned_cols=103 Identities=21% Similarity=0.177 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
.++++...||.+|...|+|++|+++|+.|+.. +|++. ..|+.||..+....+.++|+..|++|+++.
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-----~Pnd~-------~lWNRLGAtLAN~~~s~EAIsAY~rALqLq- 494 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-----KPNDY-------LLWNRLGATLANGNRSEEAISAYNRALQLQ- 494 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-----CCchH-------HHHHHhhHHhcCCcccHHHHHHHHHHHhcC-
Confidence 57888899999999999999999999999999 88776 389999999999999999999999999998
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
|... +++++||.+++.+|.|+||..+|-.+|.+++.
T Consensus 495 P~yV-------R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 495 PGYV-------RVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred CCee-------eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9888 99999999999999999999999999998755
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-09 Score=106.99 Aligned_cols=148 Identities=19% Similarity=0.188 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+.++.-.|..++-.|++-.|.+.++++++++|.+...|..+|.+|.+..+.++-.+.|.+|.++ +|.++ .
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-----dp~n~-d---- 395 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL-----DPENP-D---- 395 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-----CCCCC-c----
Confidence 4566678888899999999999999999999999999999999999999999999999999999 99998 4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.||..|..++-++++++|++.|++++.++ |++. .++..++.+.+++++.++++..|+++.+.-|+.++..
T Consensus 396 --vYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~-------~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy 465 (606)
T KOG0547|consen 396 --VYYHRGQMRFLLQQYEEAIADFQKAISLD-PENA-------YAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVY 465 (606)
T ss_pred --hhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 88999999999999999999999999998 9888 9999999999999999999999999999999999988
Q ss_pred HHHHhhHH
Q 008887 529 EQLENNDE 536 (550)
Q Consensus 529 ~~l~~~~~ 536 (550)
....+++.
T Consensus 466 ~~fAeiLt 473 (606)
T KOG0547|consen 466 NLFAEILT 473 (606)
T ss_pred HHHHHHHh
Confidence 77766543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-09 Score=105.47 Aligned_cols=137 Identities=12% Similarity=0.062 Sum_probs=124.1
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
.+...++.++|+..+.++++.+|++..+|..+|.++...| +++++++.++++++. +|.+. . +|++.+
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-----npkny-q------aW~~R~ 113 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-----NPKNY-Q------IWHHRR 113 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-----CCcch-H------HhHHHH
Confidence 4566778999999999999999999999999999999998 689999999999999 88776 3 888999
Q ss_pred HHHHHhcCH--HHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 457 VACIRQEKW--EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 457 ~~~~~~g~~--~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.++.+.|+. ++++++++++++.+ |++- .+|...+.++...|++++|++++.++++.+|.+..++....-+
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~d-pkNy-------~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLD-AKNY-------HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 999888874 78899999999998 8777 9999999999999999999999999999999999988776553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.7e-09 Score=88.90 Aligned_cols=113 Identities=20% Similarity=0.236 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+..++.+|..+...|++++|++.|+++++. +|.++... .+++.+|.++...|++++|+++|++++... |+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAP----NAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccH----HHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CC
Confidence 456788888888888888888888888887 66554211 256678888888899999999998888876 65
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.. ....+++.+|.++.+.|++++|...++++++..|++.....
T Consensus 72 ~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 72 SP----KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred CC----cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 43 22367888888888899999999999998888888776544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=103.77 Aligned_cols=101 Identities=19% Similarity=0.304 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
+..+++|..++..|++.+|+..|..|++.+|++..+++..|.+|+..|+-..|+..+.+++++ -|+.. .
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-----KpDF~------~ 107 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-----KPDFM------A 107 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-----CccHH------H
Confidence 345577777777777777777777777777777777777777777777777777777777777 33322 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+....|.++.++|++++|...|+.+++.+ |++
T Consensus 108 -ARiQRg~vllK~Gele~A~~DF~~vl~~~-~s~ 139 (504)
T KOG0624|consen 108 -ARIQRGVVLLKQGELEQAEADFDQVLQHE-PSN 139 (504)
T ss_pred -HHHHhchhhhhcccHHHHHHHHHHHHhcC-CCc
Confidence 55667777777777777777777777765 543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.8e-09 Score=114.69 Aligned_cols=139 Identities=13% Similarity=0.122 Sum_probs=119.3
Q ss_pred HHHHcCCCCChH---HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 008887 378 KFLSKGDKERPI---PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (550)
Q Consensus 378 ~~~~~g~~~~A~---~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~ 454 (550)
..-..+....+. ..+....+.+|++++++.+||.+..+.|++++|+..++.++++ .|++. . ++.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-----~Pd~~-~------a~~~ 125 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-----FPDSS-E------AFIL 125 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-----CCCcH-H------HHHH
Confidence 344445444444 4444445578999999999999999999999999999999999 88876 3 8889
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
++.++.+++++++|+..++++++.+ |++. .+++.+|.++.++|++++|.++|+++++-+|++.+++-.+...
T Consensus 126 ~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~-------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~ 197 (694)
T PRK15179 126 MLRGVKRQQGIEAGRAEIELYFSGG-SSSA-------REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS 197 (694)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcC-CCCH-------HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999999999999999998 9888 9999999999999999999999999999999988887766654
Q ss_pred HH
Q 008887 535 DE 536 (550)
Q Consensus 535 ~~ 536 (550)
+.
T Consensus 198 l~ 199 (694)
T PRK15179 198 LT 199 (694)
T ss_pred HH
Confidence 43
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=109.18 Aligned_cols=143 Identities=19% Similarity=0.234 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC--------------------------CCChHHHHHHHHHHHHcCCHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE--------------------------PDNINALILMGQTQLQKGLLEEAVE 424 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~--------------------------p~~~~a~~~lg~~~~~~g~~~eA~~ 424 (550)
.+..+|..+...++++.|+.+|++++... |+-..--...|+.+++.|+|.+|+.
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 33456778888888888999888888743 3334444567999999999999999
Q ss_pred HHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 425 ~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
+|.+++.. +|+++ .+|-|.|.||.+.|++.+|++.++++++++ |+.. .+|...|.++..+
T Consensus 380 ~YteAIkr-----~P~Da-------~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~-------kgy~RKg~al~~m 439 (539)
T KOG0548|consen 380 HYTEAIKR-----DPEDA-------RLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFI-------KAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHhc-----CCchh-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHH-------HHHHHHHHHHHHH
Confidence 99999999 88887 378899999999999999999999999998 8777 9999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 505 GRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 505 g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.+|++|.+.|+++++.+|++.++...+.+
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 99999999999999999999997776655
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=104.61 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=135.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL------------MGQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~------------lg~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
+.+.+++++..++..|+.+.++...+++|+++|++-.++-. -+......++|.++++..++.++.
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--- 298 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--- 298 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 66788899999999999999999999999999998766522 245556789999999999999998
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+|..+... ......++.|+..-|++.+|++.|.++++.+ |++. .++...|.+|....+||+|+..|+
T Consensus 299 --ep~~~~ir---~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv-------~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 299 --EPEETMIR---YNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDV-------QVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred --CCccccee---eeeeheeeecccccCCHHHHHHHHHHHHhcC-chHH-------HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 77744221 0133357899999999999999999999998 9888 999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHhhHHHHHhhhhhccccCC
Q 008887 516 LAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY 550 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~~~~~~~~l~~~~r~~~ 550 (550)
++++.++++..++..++++ .+. ...+.+|||
T Consensus 366 ~A~e~n~sn~~~reGle~A-krl---kkqs~kRDY 396 (504)
T KOG0624|consen 366 KALELNESNTRAREGLERA-KRL---KKQSGKRDY 396 (504)
T ss_pred HHHhcCcccHHHHHHHHHH-HHH---HHHhccchH
Confidence 9999999999999998883 222 234445554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.8e-09 Score=92.22 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
...+..+......++.+.+...+++..+.+|+. ..+.+.+|.++...|++++|.+.|++++.. .++...
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l--- 83 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPEL--- 83 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHH---
Confidence 355666667778999999999999999999998 577888999999999999999999999988 433321
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
...+...++.++..+|++++|+..++.. ... +- ...++..+|.+|...|++++|+..|++++
T Consensus 84 -~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~-~~-------~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 -KPLARLRLARILLQQGQYDEALATLQQI-PDE-AF-------KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCc-ch-------HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 1237778999999999999999999773 221 22 23788899999999999999999999874
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.4e-09 Score=112.34 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
.+.+...|...+..|++++|.+.+.++++.+|.++.+|+.||.+|.++||.++|....-.|..+ +|.+. .
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~d~-e---- 208 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPKDY-E---- 208 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCCh-H----
Confidence 3566788999999999999999999999999999999999999999999999999999999888 88887 3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
.|..++....++|++++|+-+|.+|++.+ |.+. ...+..+.+|.++|++.+|...|.++++.+|
T Consensus 209 --~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~-------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 209 --LWKRLADLSEQLGNINQARYCYSRAIQAN-PSNW-------ELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHHHHhcC-Ccch-------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 67789999999999999999999999998 8877 8999999999999999999999999999998
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.7e-09 Score=88.91 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
++.++..|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+++|++++.. +|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~ 76 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKSPKAP 76 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCCCccc
Confidence 4678899999999999999999999999999876 578999999999999999999999999998 77754222
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++.+|.++.+.|++++|+++++++++.. |++.
T Consensus 77 ----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 110 (119)
T TIGR02795 77 ----DALLKLGMSLQELGDKEKAKATLQQVIKRY-PGSS 110 (119)
T ss_pred ----HHHHHHHHHHHHhCChHHHHHHHHHHHHHC-cCCh
Confidence 267789999999999999999999999997 8765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.7e-09 Score=103.72 Aligned_cols=150 Identities=11% Similarity=0.014 Sum_probs=128.9
Q ss_pred ChHHHHHHHHHHHHcC-CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL--EEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g-~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~--~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
+.......+..+...| ++++++..++++++.+|++..+|+.++.++.+.|+. ++++++++++++. +|.+- +
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~-----dpkNy-~ 143 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL-----DAKNY-H 143 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh-----CcccH-H
Confidence 3445557777888887 679999999999999999999999999999999874 7889999999999 88776 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc---CCH----HHHHHHHHHH
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV---GRN----AEAEKYLRLA 517 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~---g~~----~eA~~~l~~a 517 (550)
+|.+.+.++...|++++|+++++++++.+ +++. .+|...+.++... |++ ++++++..++
T Consensus 144 ------AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~-------sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 144 ------AWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNN-------SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred ------HHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCch-------hHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 89999999999999999999999999998 8877 8999999988776 333 5788888899
Q ss_pred HHcCCCcHHHHHHHHhhHHH
Q 008887 518 AAHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 518 l~~~p~~~~~~~~l~~~~~~ 537 (550)
+..+|++..+|..+..+...
T Consensus 210 I~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 210 ILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHhCCCCcCHHHHHHHHHhc
Confidence 99999999998877665444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=116.05 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD---------------NINALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---------------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
....++..+...|++++|++.++++.+.+|. ...++..+|.++...|++++|++.++++++.
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--- 388 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--- 388 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 4457777889999999999999999998763 2457789999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
.|.++ . ++..+|.++...|++++|++.++++++.+ |++. .+++.+|.++.+.|++++|++.++
T Consensus 389 --~P~n~-~------l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~-------~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 389 --APGNQ-G------LRIDYASVLQARGWPRAAENELKKAEVLE-PRNI-------NLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred --CCCCH-H------HHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCh-------HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88886 3 77889999999999999999999999998 9888 899999999999999999999999
Q ss_pred HHHHcCCCcHHHHH
Q 008887 516 LAAAHNPQYNELLE 529 (550)
Q Consensus 516 ~al~~~p~~~~~~~ 529 (550)
++++..|++.....
T Consensus 452 ~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 452 DVVAREPQDPGVQR 465 (765)
T ss_pred HHHHhCCCCHHHHH
Confidence 99999999997654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=98.41 Aligned_cols=133 Identities=21% Similarity=0.163 Sum_probs=112.7
Q ss_pred CChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh---
Q 008887 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ--- 462 (550)
Q Consensus 386 ~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~--- 462 (550)
++-+.-++.-|..+|+|.+-|..||.+|+..|+++.|...|++|+++ .|++++ .+..+|.+++.+
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~-------~~~g~aeaL~~~a~~ 206 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNPE-------ILLGLAEALYYQAGQ 206 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCHH-------HHHHHHHHHHHhcCC
Confidence 34455677778899999999999999999999999999999999999 888873 333456555443
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHHHH
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEF 538 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~~~ 538 (550)
....++.+.+++++..+ |.+. .+.+.||..+++.|++.+|...++..+...|.+......+++.....
T Consensus 207 ~~ta~a~~ll~~al~~D-~~~i-------ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 207 QMTAKARALLRQALALD-PANI-------RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred cccHHHHHHHHHHHhcC-CccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 45678999999999998 9888 99999999999999999999999999999999888887777644443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.2e-09 Score=102.97 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL----LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 407 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~----l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
...|+.|++.|+|..|...|++|+...... .+.+++..+. ...++.|++.|+.++++|.+|++.+.++++.+ |+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~-~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~ 289 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYR-RSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PN 289 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhcc-ccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CC
Confidence 345666666666666666666666553111 1112211111 11278899999999999999999999999998 88
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+. .+++..|+++..+|+++.|+..|+++++++|++..+..++..
T Consensus 290 N~-------KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 290 NV-------KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred ch-------hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 88 999999999999999999999999999999999998887766
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-08 Score=92.57 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=121.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
.++++++..|..++..|++++|++.|+++....|.. ..+.+.+|.+++..|++++|+..+++.++. .|+++.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP~~~~ 77 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YPNSPK 77 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCcc
Confidence 478899999999999999999999999999988865 578999999999999999999999999999 888874
Q ss_pred hHHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHhcCCCCCCccccc----------cchhHHHHHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIRQ-----------EKWEEGIAHLERIGNLKEPEEPKSKA----------HYYDGLVVLASALC 502 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~-----------g~~~eA~~~~~~al~~~~p~~~~~~~----------~~~~~~~~La~~~~ 502 (550)
.. .+++.+|.+++.+ +...+|+..|++.++.. |+...... ....--+..|..|.
T Consensus 78 ~~----~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 78 AD----YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-PNSEYAEEAKKRLAELRNRLAEHELYIARFYY 152 (203)
T ss_dssp HH----HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh----hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4677788886654 34458999999999998 87763221 13444567789999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 503 NVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 503 ~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
+.|++..|+..++.+++..|+.......+
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al 181 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEAL 181 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHH
Confidence 99999999999999999999987654433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=107.95 Aligned_cols=147 Identities=20% Similarity=0.150 Sum_probs=115.4
Q ss_pred CChHHHHHHHHHHHHcCC---CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHhhh
Q 008887 367 LTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGL--------LEEAVEYLECAISKLFL 435 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~---~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~--------~~eA~~~~~~al~l~~~ 435 (550)
.++-+++-.|..++..++ +++|+++|++|++.+|+++.++..++.+|..... ..++.+..++++.+
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al--- 413 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL--- 413 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc---
Confidence 455667788888877765 6689999999999999999999999888866532 33445555554443
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
..++.++ .++..+|..+...|++++|...++++++++ | +. .+|..+|.++...|++++|.+.|+
T Consensus 414 ~~~~~~~-------~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-p-s~-------~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 414 PELNVLP-------RIYEILAVQALVKGKTDEAYQAINKAIDLE-M-SW-------LNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred ccCcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-CH-------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1133333 256668888888999999999999999997 6 35 899999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHh
Q 008887 516 LAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~ 533 (550)
++++++|.++. +..|++
T Consensus 478 ~A~~L~P~~pt-~~~~~~ 494 (517)
T PRK10153 478 TAFNLRPGENT-LYWIEN 494 (517)
T ss_pred HHHhcCCCCch-HHHHHh
Confidence 99999999885 444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=92.16 Aligned_cols=138 Identities=12% Similarity=-0.002 Sum_probs=100.9
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
++-.+++..+...+.+.++.+..+ ..+++.+|.++...|++++|+..|++++.+ .+..... ..+++++|
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~----~~~~~~lg 79 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDR----SYILYNIG 79 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhh----HHHHHHHH
Confidence 445556777777787776666555 667799999999999999999999999988 4443211 13788999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHH-------HHHHHHHHHHHcCCCcHH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA-------EAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~-------eA~~~l~~al~~~p~~~~ 526 (550)
.++...|++++|++.++++++.. |.....+.....++..+|+.+.+.|+++ +|...+++++..+|++..
T Consensus 80 ~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 80 LIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 99999999999999999999997 8776333333333344444444888877 556666667777776554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7e-08 Score=93.92 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=126.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINAL---ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~---~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
.+++..+..|..++..|++++|++.|++++..+|+...+. +.+|.+|++.+++++|+..+++.++. +|+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcCCCc
Confidence 4777889999999999999999999999999999886554 89999999999999999999999999 998885
Q ss_pred hHHHHHHHHHHHHHHHHHhc------------------CHHHHHHHHHHHhcCCCCCCccccc----------cchhHHH
Q 008887 444 AIDLLIVASQWSGVACIRQE------------------KWEEGIAHLERIGNLKEPEEPKSKA----------HYYDGLV 495 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g------------------~~~eA~~~~~~al~~~~p~~~~~~~----------~~~~~~~ 495 (550)
.. .+++.+|.++...+ ...+|++.|++.++.. |+..-... ..+.--+
T Consensus 105 ~~----~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-P~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 105 ID----YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred hH----HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHH
Confidence 54 46677888865443 1357889999999998 87642221 1334445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 496 VLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 496 ~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
..|+.|.+.|++.-|+.-++.+++..|+.+...+-+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal 215 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL 215 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence 678889999999999999999999988876644433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-08 Score=80.35 Aligned_cols=98 Identities=27% Similarity=0.345 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+++.+|.++...|++++|+..++++++. .|.++ .+++.+|.++...|++++|+++++++++.. +.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNA-------DAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ccch
Confidence 4566777777777777777777777666 44443 255567777777777777777777777765 5555
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 485 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 485 ~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
..+..+|.++...|++++|...++++++.+|
T Consensus 69 -------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 -------KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -------hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 6667777777777777777777777766655
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=92.64 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
+....+++.+|..+...|++++|+.+|+++++. .|..++. ..+++++|.++...|++++|++.++++++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKL-----EEDPNDR----SYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----hhccchH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 456677888888888889999999999888887 4443311 1267788899999999999999999988887
Q ss_pred CCCCccccccchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCcH
Q 008887 480 EPEEPKSKAHYYDGLVVLASALCNVGR--------------NAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 480 ~p~~~~~~~~~~~~~~~La~~~~~~g~--------------~~eA~~~l~~al~~~p~~~ 525 (550)
|.+. ..+..+|.+|...|+ +++|.+.++++++.+|++.
T Consensus 103 -p~~~-------~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 103 -PKQP-------SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred -cccH-------HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 7666 778888888888777 6788888888888888874
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-08 Score=107.17 Aligned_cols=150 Identities=19% Similarity=0.107 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHHHHc---CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSK---GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~---g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
..+++..+|..-+.. ..+..+..++.++...++++|.++..++.-++..|+|+.+....+.++... ..
T Consensus 232 ~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---------~~ 302 (1018)
T KOG2002|consen 232 CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT---------EN 302 (1018)
T ss_pred hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---------hh
Confidence 344455555544333 345568888888888888888888888888888888888888888877761 12
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.....+.+|++|++|..+|++++|..+|.++++.+ +++ ..-.++.+|+.|...|++++|..+|++++..+|++
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~------~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDN------FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN 375 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCC------ccccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence 23333477788888888888888888888888876 443 12677788888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 008887 525 NELLEQLEN 533 (550)
Q Consensus 525 ~~~~~~l~~ 533 (550)
.+....+.-
T Consensus 376 ~etm~iLG~ 384 (1018)
T KOG2002|consen 376 YETMKILGC 384 (1018)
T ss_pred HHHHHHHHh
Confidence 877666554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-08 Score=110.91 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.++..+...|+.++|+.++++++..++........+|.+|...|++++|++.|+++++. +|+++ . ++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~-----dP~n~-~------~l~ 140 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK-----DPTNP-D------LIS 140 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH-H------HHH
Confidence 44555555566666666666665323333333334455666666666666666666666 55554 2 333
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.++..+.+.++.++|++.++++...+ |+.. .+..++.++...++..+|++.++++++.+|++.++...+-.
T Consensus 141 gLa~~y~~~~q~~eAl~~l~~l~~~d-p~~~--------~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 141 GMIMTQADAGRGGVVLKQATELAERD-PTVQ--------NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHhcccC-cchH--------HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45566666666666666666665554 4322 12333444444555555666666666666666665544443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-08 Score=102.68 Aligned_cols=156 Identities=15% Similarity=0.219 Sum_probs=130.7
Q ss_pred cCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 364 ~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+++....++...|..+...|+.|+|...|..|-+.-|+...-...+|.-|.+.+.++-|.++|.+|+.+ .|.+|
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-----~P~Dp- 414 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-----APSDP- 414 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-----CCCcc-
Confidence 333456678889999999999999999999999999998888888999999999999999999999999 88888
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
...+.+|.+.+..+.|.+|..+|+++++.. ++...........+.+||.+|.+++++++|+.++++++.+.|.
T Consensus 415 ------lv~~Elgvvay~~~~y~~A~~~f~~~l~~i-k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 415 ------LVLHELGVVAYTYEEYPEALKYFQKALEVI-KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred ------hhhhhhhheeehHhhhHHHHHHHHHHHHHh-hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 366789999999999999999999999543 2222222234457899999999999999999999999999999
Q ss_pred cHHHHHHHH
Q 008887 524 YNELLEQLE 532 (550)
Q Consensus 524 ~~~~~~~l~ 532 (550)
+...+..+.
T Consensus 488 ~~~~~asig 496 (611)
T KOG1173|consen 488 DASTHASIG 496 (611)
T ss_pred chhHHHHHH
Confidence 988665443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-07 Score=98.24 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=117.4
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
....|...+..|+++.|.+.+.++.+..|+....+...|.++.+.|++++|.++++++.+. .|.+... .
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~l~------~ 155 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDNIL------V 155 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCchH------H
Confidence 3478889999999999999999999999988888889999999999999999999999888 5555411 2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
....+..+...|++++|.+.+++..+.. |+++ .++..++.+|.+.|++++|.+.+.+..+......
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~-------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMA-PRHK-------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 2335889999999999999999999998 9888 9999999999999999999999999998754433
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=101.18 Aligned_cols=152 Identities=20% Similarity=0.164 Sum_probs=127.2
Q ss_pred ccCccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 360 ~~~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
.++.++-.++.++.+.|...+..|++++|.+.|+++|..+..+.++++++|..+..+|+.++|+++|-+...+.
T Consensus 481 ~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il------ 554 (840)
T KOG2003|consen 481 IALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL------ 554 (840)
T ss_pred HHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH------
Confidence 35556656788888999999999999999999999999999999999999999999999999999998877663
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+.. +..+.++.+|....+..+|++++-++..+. |+++ ..+..||.+|.+.|+..+|.+++-...+
T Consensus 555 --~nn~----evl~qianiye~led~aqaie~~~q~~sli-p~dp-------~ilskl~dlydqegdksqafq~~ydsyr 620 (840)
T KOG2003|consen 555 --LNNA----EVLVQIANIYELLEDPAQAIELLMQANSLI-PNDP-------AILSKLADLYDQEGDKSQAFQCHYDSYR 620 (840)
T ss_pred --HhhH----HHHHHHHHHHHHhhCHHHHHHHHHHhcccC-CCCH-------HHHHHHHHHhhcccchhhhhhhhhhccc
Confidence 1122 255679999999999999999999999998 9998 8888888888888888888877777777
Q ss_pred cCCCcHHHHHHH
Q 008887 520 HNPQYNELLEQL 531 (550)
Q Consensus 520 ~~p~~~~~~~~l 531 (550)
.-|-+.+..+-|
T Consensus 621 yfp~nie~iewl 632 (840)
T KOG2003|consen 621 YFPCNIETIEWL 632 (840)
T ss_pred ccCcchHHHHHH
Confidence 767666644433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-08 Score=95.91 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHH-HHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKF-LSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~-~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+.+..++.|..+ +..|+|++|+..|++.++.+|++ +.+++++|.+|+..|++++|+..|++++.. +|.++.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~s~~ 215 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPKSPK 215 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCcc
Confidence 566778888876 66799999999999999999998 589999999999999999999999999999 787765
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.. .+++.+|.++...|++++|++.|+++++.. |+..
T Consensus 216 ~~----dAl~klg~~~~~~g~~~~A~~~~~~vi~~y-P~s~ 251 (263)
T PRK10803 216 AA----DAMFKVGVIMQDKGDTAKAKAVYQQVIKKY-PGTD 251 (263)
T ss_pred hh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCH
Confidence 44 366679999999999999999999999997 8665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.7e-08 Score=93.66 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 402 NINALILMGQTQ-LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 402 ~~~a~~~lg~~~-~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
+....+..|..+ ...|+|++|+..|++.++. +|++.... .+++++|.+|+..|++++|+..|+++++..
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~~a~----~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y- 210 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDSTYQP----NANYWLGQLNYNKGKKDDAAYYFASVVKNY- 210 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-
Confidence 456677777765 5679999999999999999 88775322 388899999999999999999999999987
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
|+++ ...++++.+|.++...|++++|...|+++++..|+...+..
T Consensus 211 P~s~----~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 211 PKSP----KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred CCCc----chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 7665 55689999999999999999999999999999999876443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.6e-08 Score=79.12 Aligned_cols=97 Identities=27% Similarity=0.360 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|.+++++++.. .|.+. .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-----DPDNA-------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcch-------h
Confidence 35688999999999999999999999999999999999999999999999999999999998 66665 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
++..+|.++...|++++|.+.++++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 67789999999999999999999998875
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-07 Score=88.20 Aligned_cols=143 Identities=18% Similarity=0.122 Sum_probs=122.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+.+...-.|..+-..|++++|+++|+..++.||.|...+...-.+.-.+|+.-+|++.+.+.++. .+.+.
T Consensus 85 S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~----- 154 (289)
T KOG3060|consen 85 SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQ----- 154 (289)
T ss_pred ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcH-----
Confidence 34444567888999999999999999999999999999998888888999999999999999999 77777
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG---RNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g---~~~eA~~~l~~al~~~p~~ 524 (550)
++|..++..|...|+|++|.-++++++-.+ |-++ ..+..+|++++-+| +.+-|..+|.++++++|.+
T Consensus 155 --EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~-------l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 155 --EAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNP-------LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred --HHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 489999999999999999999999999998 9887 66667777765544 6788999999999999976
Q ss_pred HHHHHH
Q 008887 525 NELLEQ 530 (550)
Q Consensus 525 ~~~~~~ 530 (550)
...+..
T Consensus 225 ~ral~G 230 (289)
T KOG3060|consen 225 LRALFG 230 (289)
T ss_pred HHHHHH
Confidence 665543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-08 Score=78.03 Aligned_cols=64 Identities=34% Similarity=0.595 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.+|..++..|++++|++.|+++++.+|+++.+++.+|.++...|++++|+.+|+++++. +|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-----~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL-----DPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----STT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCC
Confidence 67899999999999999999999999999999999999999999999999999999999 77764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.5e-08 Score=104.92 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=134.6
Q ss_pred CccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPD---NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 362 ~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
..+.+-+|..+..+|..++..|+|+.+..+.+.++...-. -++.+|++|..|..+|+|++|..+|.+++.. +
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~ 337 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----D 337 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----C
Confidence 3344458889999999999999999999999999986533 3567999999999999999999999999988 5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC----CHHHHHHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG----RNAEAEKYL 514 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g----~~~eA~~~l 514 (550)
+++- . ..++.+|..++..|+++.|..+|+++++.. |++. +....||.+|...+ ..++|..++
T Consensus 338 ~d~~-~-----l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~-------etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 338 NDNF-V-----LPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY-------ETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred CCCc-c-----ccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH-------HHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 6552 1 377889999999999999999999999998 9888 99999999999876 679999999
Q ss_pred HHHHHcCCCcHHHHHHHHhh
Q 008887 515 RLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 515 ~~al~~~p~~~~~~~~l~~~ 534 (550)
.++++..|.+.+++-.+.+.
T Consensus 404 ~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 404 GKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred HHHHhcccccHHHHHHHHHH
Confidence 99999999999988877764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=84.11 Aligned_cols=115 Identities=11% Similarity=0.112 Sum_probs=90.9
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 008887 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474 (550)
Q Consensus 395 aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~ 474 (550)
+..+.++..+..+..|.-+++.|++++|...|+-.... ++.++ . .+..||.|+..+++|++|+..|..
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~~n~-~------Y~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DFYNP-D------YTMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcCcH-H------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888889999988888777776 66665 2 566788888888889999988888
Q ss_pred HhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 475 IGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 475 al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
+..+. ++|+ ...+..|.||..+|+.++|+.+|+.++. +|++......
T Consensus 97 A~~l~-~~dp-------~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~ 143 (165)
T PRK15331 97 AFTLL-KNDY-------RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAK 143 (165)
T ss_pred HHHcc-cCCC-------CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence 88887 7777 7788888899999999999988888888 5666655443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=81.50 Aligned_cols=84 Identities=32% Similarity=0.432 Sum_probs=68.8
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHH
Q 008887 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494 (550)
Q Consensus 415 ~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~ 494 (550)
..|++++|+.+++++++. +|.+++. ..++.+|.|+++.|++++|++.+++ .+.+ +.+. ...
T Consensus 1 ~~~~y~~Ai~~~~k~~~~-----~~~~~~~-----~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~-------~~~ 61 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLEL-----DPTNPNS-----AYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNP-------DIH 61 (84)
T ss_dssp HTT-HHHHHHHHHHHHHH-----HCGTHHH-----HHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHH-------HHH
T ss_pred CCccHHHHHHHHHHHHHH-----CCCChhH-----HHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCH-------HHH
Confidence 368999999999999999 6654322 2566799999999999999999999 6665 5444 788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 008887 495 VVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+.+|.|+.++|++++|++.++++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhcC
Confidence 88899999999999999999875
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.8e-09 Score=99.85 Aligned_cols=143 Identities=14% Similarity=0.138 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
.-+|..|+..++.+-|+.+|++.|+..-.+++.+.++|.+.+..++++-++..|++|+... .+|... . ..|
T Consensus 328 Acia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta---t~~~~a-a-----DvW 398 (478)
T KOG1129|consen 328 ACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA---TQPGQA-A-----DVW 398 (478)
T ss_pred eeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc---cCcchh-h-----hhh
Confidence 3456678999999999999999999999999999999999999999999999999999984 234333 2 389
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
||+|.+....|++.-|..+|+-++..+ ++.. +++.+||.+..+.|+.++|+.++..+-..+|+..+...++.
T Consensus 399 YNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~-------ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 399 YNLGFVAVTIGDFNLAKRCFRLALTSD-AQHG-------EALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hccceeEEeccchHHHHHHHHHHhccC-cchH-------HHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 999999999999999999999999987 7766 99999999999999999999999999999999887665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-08 Score=78.15 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISK 432 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l 432 (550)
++..+..+|..++..|++++|+..|+++++.+|+++.+++++|.++...| ++++|++++++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46678899999999999999999999999999999999999999999999 799999999999998
|
... |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=105.03 Aligned_cols=130 Identities=15% Similarity=0.088 Sum_probs=85.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
+.....+..+|..+...|++++|++.|+++++.+|+++.++..++.+|...++.++|++.++++... +|...
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----dp~~~--- 170 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-----DPTVQ--- 170 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----CcchH---
Confidence 3444454455667777777777777777777777777777777777777777777777777777666 44422
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+..++.++...++..+|++.++++++.+ |++. +.+..+..++.+.|-.+.|.+..++
T Consensus 171 -----~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~-------e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 171 -----NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSE-------EVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred -----HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 11223444444566656777777777776 7666 6777777777777777777655443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-08 Score=75.77 Aligned_cols=64 Identities=27% Similarity=0.362 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.+|..+++.|++++|++.|+++++.. |++. .+++.+|.++.+.|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNP-------EAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHH-------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 58999999999999999999999998 8887 9999999999999999999999999999999874
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-06 Score=78.73 Aligned_cols=131 Identities=19% Similarity=0.166 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~-~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
...-+.+|......|++.+|..+|++++. ...+++..+..+++..+..+++.+|...+++..+. +|.....+..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~-----~pa~r~pd~~ 163 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY-----NPAFRSPDGH 163 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-----CCccCCCCch
Confidence 34556899999999999999999999998 77889999999999999999999999999999999 7755433322
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
+ -+|+.+..+|++++|...|+.++... |. + .+...++..+.++|+.++|.+.+..+.
T Consensus 164 L-----l~aR~laa~g~~a~Aesafe~a~~~y-pg-~-------~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 L-----LFARTLAAQGKYADAESAFEVAISYY-PG-P-------QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred H-----HHHHHHHhcCCchhHHHHHHHHHHhC-CC-H-------HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3 38999999999999999999999986 43 3 688888999999999988887666543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-07 Score=93.06 Aligned_cols=160 Identities=15% Similarity=0.088 Sum_probs=126.1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-------c-
Q 008887 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL-------A- 436 (550)
Q Consensus 365 ~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~-------~- 436 (550)
++.+-..+.-.|..+...|+.++|+-.|+.|..+.|...++|..+-..|...|++.||....+.+++.... .
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 33455677788999999999999999999999999999999999999999999998887766666554200 0
Q ss_pred -----CCCCChhhHHHH-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH
Q 008887 437 -----GHPTEPEAIDLL-----------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 500 (550)
Q Consensus 437 -----~~p~~~~~~~~l-----------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~ 500 (550)
.+|...+....+ ..+...++..+...|++++++.++++.+... +++ ..+..||..
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~--------~LH~~Lgd~ 480 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-PDV--------NLHNHLGDI 480 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-ccc--------HHHHHHHHH
Confidence 011111111111 0145567888889999999999999999986 655 488999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 501 LCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 501 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+...+.+.+|.++|..+++++|++....+.+.+
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 999999999999999999999999999888876
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=85.94 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD---NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
...++.+|..+...|++++|+..|+++++..++ .+.++.++|.++...|++++|++++++++++ +|......
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----~~~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----NPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHH
Confidence 445568999999999999999999999998766 3468999999999999999999999999999 77776443
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHH-------HHHHHHHhcCC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEG-------IAHLERIGNLK 479 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA-------~~~~~~al~~~ 479 (550)
..+...+..+|..+...|++++| +..+++++..+
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444555555555588887755 55555566665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-08 Score=76.35 Aligned_cols=68 Identities=35% Similarity=0.497 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCC
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLK 479 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~ 479 (550)
+++..+..+|.++...|++++|+.+|++++++ +|+++ .+++++|.++..+| ++++|++.++++++++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~-------~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNNA-------EAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTHH-------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 36789999999999999999999999999999 77776 38889999999999 7999999999999986
Q ss_pred CC
Q 008887 480 EP 481 (550)
Q Consensus 480 ~p 481 (550)
|
T Consensus 69 -P 69 (69)
T PF13414_consen 69 -P 69 (69)
T ss_dssp -T
T ss_pred -c
Confidence 5
|
... |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=100.02 Aligned_cols=132 Identities=18% Similarity=0.139 Sum_probs=122.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
..|..+...++.++|..++.++-+.+|..+..|+..|..+...|++++|.+.|..|+.+ +|++. . ...
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-----dP~hv-~------s~~ 722 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-----DPDHV-P------SMT 722 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-----CCCCc-H------HHH
Confidence 67778888899999999999999999999999999999999999999999999999999 88887 2 555
Q ss_pred HHHHHHHHhcCHHHHHH--HHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 454 WSGVACIRQEKWEEGIA--HLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~--~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.+|.++.+.|+-.-|.. .+..+++++ |.++ ++|+++|.++.+.|+.++|.++|..++++.+.++
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~-------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLD-PLNH-------EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCH-------HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 79999999999888888 999999998 9999 9999999999999999999999999999987665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=97.79 Aligned_cols=130 Identities=18% Similarity=0.080 Sum_probs=95.8
Q ss_pred HHHHcCCCCChHHHHHHHH----hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLAL----NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL----~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.+...|++..+.....+++ ..+|+...++..+|.++...|++++|++.+++++++ +|.+. . ++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~~-~------~~~ 152 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDDA-W------AVH 152 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCc-H------HHH
Confidence 4444444444444444444 344555666677888899999999999999999998 77775 2 667
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.+|.++...|++++|+++++++++.. +.++ ......+..+|.++...|++++|...|++++...|.
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~-~~~~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTW-DCSS---MLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhcc-CCCc---chhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 78999999999999999999998876 5432 112245668899999999999999999998776663
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-07 Score=91.74 Aligned_cols=122 Identities=22% Similarity=0.238 Sum_probs=110.3
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 398 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.+|....++|..+..++..|++++|+..++..+.. .|+++ + .+-..+.++.+.|+.++|.+.+++++.
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N~-~------~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDNP-Y------YLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred hCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCCH-H------HHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 33788999999999999999999999999998888 88877 3 444678999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHHHHH
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFV 539 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~~~~ 539 (550)
.+ |... -...++|.+|.+.|++++|+..+++.+..+|+++..|..|.++.++.+
T Consensus 369 l~-P~~~-------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 369 LD-PNSP-------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred cC-CCcc-------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 98 8777 899999999999999999999999999999999999999998765543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=95.33 Aligned_cols=136 Identities=10% Similarity=0.006 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHcCC---CCChHHHHHHHH---hhCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhh
Q 008887 371 ELIALSVKFLSKGD---KERPIPLLQLAL---NKEPDNINALILMGQTQLQK---------GLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 371 ~l~~la~~~~~~g~---~~~A~~~~~~aL---~~~p~~~~a~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~ 435 (550)
+++-.|..++..+. .+.|+.+|.+|+ +.+|+++.++-.++.++... .+-.+|.+..++|+++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--- 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--- 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---
Confidence 66777777776664 456899999999 89999999999999998765 2345788999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+|.++ . +...+|.++...++++.|...|++++.++ |+.. .+++..|.+..-.|+.++|.+..+
T Consensus 334 --d~~Da-~------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A-------~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 334 --TTVDG-K------ILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIA-------SLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred --CCCCH-H------HHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccH-------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888 3 77789999999999999999999999998 9888 999999999999999999999999
Q ss_pred HHHHcCCCcHH
Q 008887 516 LAAAHNPQYNE 526 (550)
Q Consensus 516 ~al~~~p~~~~ 526 (550)
++++++|.-..
T Consensus 397 ~alrLsP~~~~ 407 (458)
T PRK11906 397 KSLQLEPRRRK 407 (458)
T ss_pred HHhccCchhhH
Confidence 99999998655
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-06 Score=92.37 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILM-GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~l-g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
..+..|...+..||+++|++...++-+.. +++..++.+ +.+..+.|++++|.++++++.+. +|++...
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-----~~~~~~~----- 154 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-----ADNDQLP----- 154 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCcchHH-----
Confidence 44578888889999999997777765443 345555555 66669999999999999999888 6665411
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.....+..+...|++++|++.+++..+.. |+++ .++..++.+|.+.|++++|.+.+.+..+......+...
T Consensus 155 -~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~-------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 155 -VEITRVRIQLARNENHAARHGVDKLLEVA-PRHP-------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22234889999999999999999999998 9888 99999999999999999999999998887766554333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=98.10 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+++..+.|..++..|+|.+|+.+|.++++.+|+++.+|.++|.+|.+.|.+.+|+...++++++ +|+..
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-----~p~~~------ 426 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-----DPNFI------ 426 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CchHH------
Confidence 3344578999999999999999999999999999999999999999999999999999999999 66665
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+|..-|.++....+|++|.+.|+++++.+ |++. ++...+.+|+..+.......+.+++
T Consensus 427 -kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~-------e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 427 -KAYLRKGAALRAMKEYDKALEAYQEALELD-PSNA-------EAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhH-------HHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 377788999999999999999999999998 8887 8888888998875444444445554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-07 Score=87.17 Aligned_cols=143 Identities=22% Similarity=0.253 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
-.+++|..+....+.+.|...+++|++.+|++.++-..+|.++...|+|++|++.++.+++. ||..- .+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~~yl------~e 250 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-----NPEYL------SE 250 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----ChHHH------HH
Confidence 44599999999999999999999999999999999999999999999999999999999998 44433 33
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
....|..||.++|+.++++..+.++.+.. +. . ++...+++.-....-.++|..++.+-++.+|......+.
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-~g-~-------~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl 321 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETN-TG-A-------DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL 321 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcc-CC-c-------cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH
Confidence 55679999999999999999999999985 32 2 577788888888888999999999999999998877765
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
++.
T Consensus 322 ~~~ 324 (389)
T COG2956 322 MDY 324 (389)
T ss_pred HHh
Confidence 543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-07 Score=84.12 Aligned_cols=115 Identities=21% Similarity=0.235 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
.-+..-|+-++..|+|++|..-|..|++. .|..+.....+ .+.+.|.|++++++++.|++.+.++++++ |.+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~-----cp~~~~e~rsI--ly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty 167 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALES-----CPSTSTEERSI--LYSNRAAALIKLRKWESAIEDCSKAIELN-PTY 167 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHh-----CccccHHHHHH--HHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chh
Confidence 34556688899999999999999999999 78766432222 67789999999999999999999999998 877
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
. .++...|.+|.++.++++|+..|+++++.+|...++++.+.+
T Consensus 168 ~-------kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 168 E-------KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred H-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 7 899999999999999999999999999999999988877765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-07 Score=84.76 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
.....+.+|..+...|++++|+.+|+++++..|+. ..++..+|.++.+.|++++|+++++++++. +|.+. .
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~ 107 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQP-S 107 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH-H
Confidence 44456799999999999999999999999887653 568999999999999999999999999999 77665 2
Q ss_pred HHHHHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHhcCC
Q 008887 445 IDLLIVASQWSGVACIRQEK--------------WEEGIAHLERIGNLK 479 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~--------------~~eA~~~~~~al~~~ 479 (550)
++..+|.++...|+ +++|++.++++++.+
T Consensus 108 ------~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 108 ------ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred ------HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 55677888887776 456666666666665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-07 Score=93.77 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
....+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++. .|.++. ....
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~-----~~~~~~---~~~~ 187 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT-----WDCSSM---LRGH 187 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----cCCCcc---hhHH
Confidence 33477889999999999999999999999999999999999999999999999999999988 554321 1112
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.+..+|.++..+|++++|++.+++++...
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 67789999999999999999999997765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-07 Score=96.89 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=112.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.....|..+...|+.++|.+.++++++. +.+......++.+ ..++.+++++.+++.++. +|+++ .
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~-----~P~~~-~--- 329 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ-----HGDTP-L--- 329 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh-----CCCCH-H---
Confidence 6777789999999999999999999999995 4466655555554 449999999999999999 88887 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.+..+|..+...|++++|.++|+++++.. |++. .+..++.++.+.|+.++|.++|++++.+.
T Consensus 330 ---l~l~lgrl~~~~~~~~~A~~~le~al~~~-P~~~--------~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 ---LWSTLGQLLMKHGEWQEASLAFRAALKQR-PDAY--------DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56679999999999999999999999997 7654 57799999999999999999999998754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-07 Score=92.02 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
.++++++|..+-..|++++|+++|-+.-.+--+++++++.++.+|....+..+|++++-++..+ -|++|..-..+
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~ilskl 598 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAILSKL 598 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHHHHH
Confidence 3566677777777777777777777665555556666666666666666666666666666555 44444221111
Q ss_pred H---------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH
Q 008887 449 I---------------------------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 501 (550)
Q Consensus 449 ~---------------------------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~ 501 (550)
. +..-++|..|....-.++|+.+|+++.-++ |+.. .-....+.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq-p~~~-------kwqlmiasc~ 670 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ-PNQS-------KWQLMIASCF 670 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-ccHH-------HHHHHHHHHH
Confidence 1 133468888888888999999999988887 7665 6677889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 502 CNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 502 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.+.|+|.+|.+.|+..-+.-|++.+.++.|-++
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 999999999999999988888888877665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-07 Score=80.09 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
.++.+++..|...+..|+|++|++.|+......|.. ..+...+|.+|++.|++++|+..+++-+++ +|+++.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~hp~ 82 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTHPN 82 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCCC
Confidence 588999999999999999999999999999988764 578899999999999999999999999999 999985
Q ss_pred hHHHHHHHHHHHHHHHHHhcC---------------HHHHHHHHHHHhcCCCCCCc
Q 008887 444 AIDLLIVASQWSGVACIRQEK---------------WEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~---------------~~eA~~~~~~al~~~~p~~~ 484 (550)
.. .+++..|.+++++.. ..+|...|++.++.. |+..
T Consensus 83 vd----Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y-P~S~ 133 (142)
T PF13512_consen 83 VD----YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY-PNSE 133 (142)
T ss_pred cc----HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC-cCCh
Confidence 43 477789999999877 889999999999998 8765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.3e-07 Score=82.57 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
-+.++..|..++..|++++|+..|+-....+|.+.+.+..||.++..+|+|++|+..|..+..+ ++++| .
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~~~dp-~---- 106 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-----LKNDY-R---- 106 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccCCC-C----
Confidence 3466799999999999999999999999999999999999999999999999999999999988 66666 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
..+..|.|+...|+.++|..+|+.+++. |.+.
T Consensus 107 --p~f~agqC~l~l~~~~~A~~~f~~a~~~--~~~~ 138 (165)
T PRK15331 107 --PVFFTGQCQLLMRKAAKARQCFELVNER--TEDE 138 (165)
T ss_pred --ccchHHHHHHHhCCHHHHHHHHHHHHhC--cchH
Confidence 4557999999999999999999999986 5443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-07 Score=88.58 Aligned_cols=107 Identities=22% Similarity=0.282 Sum_probs=96.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
+++.+++.|..++..|+|.+|...|...++.+|+. ++++|+||++++.+|++++|...|..+.+. .|.++..
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~KA 214 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPKA 214 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCCC
Confidence 34458899999999999999999999999999875 689999999999999999999999999998 8887766
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+ +.+.+|.|..++|+.++|...++++++.. |...
T Consensus 215 pd----allKlg~~~~~l~~~d~A~atl~qv~k~Y-P~t~ 249 (262)
T COG1729 215 PD----ALLKLGVSLGRLGNTDEACATLQQVIKRY-PGTD 249 (262)
T ss_pred hH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCCH
Confidence 54 44469999999999999999999999998 8665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-07 Score=96.66 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=110.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINAL--ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~--~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
+++.....|..+...|++++|.+.++++++.+|++.... ..........++.+++++.++++++. +|++++ .
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~~~~-~ 335 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-----VDDKPK-C 335 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-----CCCChh-H
Confidence 566667899999999999999999999999999987542 33444445568899999999999999 888873 1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLE--RIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~--~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
. ....+|..+++.|++++|.++|+ ++++.. |+.. .+..+|.++.+.|+.++|.++|++++..
T Consensus 336 ~----ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-p~~~--------~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 336 C----INRALGQLLMKHGEFIEAADAFKNVAACKEQ-LDAN--------DLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred H----HHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-CCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 34469999999999999999999 576675 6443 4669999999999999999999998653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.2e-07 Score=83.89 Aligned_cols=141 Identities=17% Similarity=0.125 Sum_probs=124.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
....+.+..|+.+.|..++++.....|++.+.....|..+...|++++|+++|+..++- +|++. . .+-
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-----dpt~~-v------~~K 124 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-----DPTDT-V------IRK 124 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-----Ccchh-H------HHH
Confidence 56667888999999999999998888999999999999999999999999999999998 88776 2 222
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.--.+...+|+.-+|++.+.+.++.. +.|. ++|..++++|...|++++|.-+|++++-++|.+.-+..++.+
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F-~~D~-------EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae 196 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKF-MNDQ-------EAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAE 196 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHh-cCcH-------HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 23345667899999999999999998 8888 999999999999999999999999999999999988777765
Q ss_pred h
Q 008887 534 N 534 (550)
Q Consensus 534 ~ 534 (550)
.
T Consensus 197 ~ 197 (289)
T KOG3060|consen 197 V 197 (289)
T ss_pred H
Confidence 3
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=93.69 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=127.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH-----
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL----- 448 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l----- 448 (550)
-.+.++...|++++|.+.--..+++++.+.++++..|.+++..++.+.|+.+|++++.+ +|.+.......
T Consensus 174 lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 174 LKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQKSKSASMMPKK 248 (486)
T ss_pred hhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc-----ChhhhhHHhHhhhHHH
Confidence 56778899999999999999999999999999999999999999999999999999999 77765332111
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.+.+..-|.-.++.|+|.+|.+.|.++|.++ |++. ......|.+.|.+..++|+.++|+..+++++++++.+..++
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~id-P~n~---~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNID-PSNK---KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCC-cccc---chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 1256667888999999999999999999998 8755 44557899999999999999999999999999999988754
Q ss_pred H
Q 008887 529 E 529 (550)
Q Consensus 529 ~ 529 (550)
.
T Consensus 325 l 325 (486)
T KOG0550|consen 325 L 325 (486)
T ss_pred H
Confidence 4
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-08 Score=79.73 Aligned_cols=82 Identities=28% Similarity=0.406 Sum_probs=67.0
Q ss_pred HcCCCCChHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNKEPD--NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
.+|++++|+..++++++.+|. +...++.+|.+|++.|++++|++.+++ ... ++.+. ...+.+|.|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-----~~~~~-------~~~~l~a~~ 67 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-----DPSNP-------DIHYLLARC 67 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-----HHCHH-------HHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-----CCCCH-------HHHHHHHHH
Confidence 368999999999999999995 466778899999999999999999998 555 33222 255567999
Q ss_pred HHHhcCHHHHHHHHHHH
Q 008887 459 CIRQEKWEEGIAHLERI 475 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~a 475 (550)
+.++|++++|++.++++
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-07 Score=95.19 Aligned_cols=151 Identities=18% Similarity=0.082 Sum_probs=131.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
.-.|..+...||...|...+.++++.+|++-+.|..--.+.....+++.|...|.++... .|+.. .|
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-----sgTeR--------v~ 654 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-----SGTER--------VW 654 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-----CCcch--------hh
Confidence 356677888899999999999999999999999999999999999999999999999887 55554 66
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
+.-+.....+++.++|+.+++++++.. |.+. ..|..+|+++.++++.+.|++.|...++..|+....|-.+.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~-------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSF-PDFH-------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhC-CchH-------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 677888888999999999999999998 8887 99999999999999999999999999999999999999888
Q ss_pred hhHHHHHhhhhhc
Q 008887 533 NNDEEFVSDLSSS 545 (550)
Q Consensus 533 ~~~~~~~~~l~~~ 545 (550)
+. ++....+.++
T Consensus 727 kl-eEk~~~~~rA 738 (913)
T KOG0495|consen 727 KL-EEKDGQLVRA 738 (913)
T ss_pred HH-HHHhcchhhH
Confidence 84 4333344433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.2e-07 Score=76.80 Aligned_cols=103 Identities=25% Similarity=0.173 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+.+++.+|.++...|+.++|+.+|+++++. ........ .++..+|.++...|++++|+..+++++... |+
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~----~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~ 70 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRR----RALIQLASTLRNLGRYDEALALLEEALEEF-PD 70 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC
Confidence 357889999999999999999999999887 44433222 367789999999999999999999999876 76
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+. ........++.++...|+++||+..+-.++.
T Consensus 71 ~~----~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DE----LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cc----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 2226777888999999999999998887775
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-07 Score=86.09 Aligned_cols=111 Identities=22% Similarity=0.232 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
.|+.|.-+++.|||.+|.+.|.+-+.. .|+..... .++||||.+++.+|+|++|...|..+.+.. |+.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~----nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~- 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTP----NAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSP- 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccc----hhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCC-
Confidence 777888889999999999999999999 77665332 599999999999999999999999999987 7766
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
...++++.+|.|..++|+.++|...|+++++..|+...+...
T Consensus 213 ---KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 213 ---KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred ---CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 444899999999999999999999999999999998876543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.4e-07 Score=94.00 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
..++..+...+..++|...++..+..|+..|++++.+...|..+...|+-++|..+.+.+++. ++...
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-----d~~S~------- 75 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-----DLKSH------- 75 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc-----Ccccc-------
Confidence 366789999999999999999999999999999999999999999999999999999999987 77665
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
..|+.+|..+...++|++|+++|+.|+..+ +++. ..+.-++-+..++|+++.....-.+.++..|.....|-
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~-------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~ 147 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNL-------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWI 147 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcH-------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 388999999999999999999999999998 8877 89999999999999999999998899999888877665
Q ss_pred HHH
Q 008887 530 QLE 532 (550)
Q Consensus 530 ~l~ 532 (550)
.+.
T Consensus 148 ~~A 150 (700)
T KOG1156|consen 148 GFA 150 (700)
T ss_pred HHH
Confidence 443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-07 Score=97.80 Aligned_cols=134 Identities=17% Similarity=0.103 Sum_probs=119.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++++....|...+..++|+++.++++..++.+|-....|+.+|.++.+.++++.|.++|.+++.+ +|++.
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-----~Pd~~----- 553 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-----EPDNA----- 553 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-----CCCch-----
Confidence 44444455555677899999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
++|+|++.+|.+.|+-.+|...+.++++.+ -... ..|.+.-.+..+.|.+++|+++|.+.+.+.
T Consensus 554 --eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w-------~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 554 --EAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHW-------QIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred --hhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCC-------eeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 499999999999999999999999999986 5555 788888889999999999999999988765
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=98.09 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=117.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh--hhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--EAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~--~~~ 445 (550)
..+++..+...+...+++++|++.++.+++.+|+...+++.+|.++.+.+++.++... .++.. .+.+. ...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-----~~~~~~~~~v 102 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-----FSQNLKWAIV 102 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----cccccchhHH
Confidence 4556678999999999999999999999999999999999999999999999988776 66655 22221 112
Q ss_pred HHHH----------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 446 DLLI----------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 446 ~~l~----------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
.++. .+++.+|.||.+.|+.++|.+.++++++.+ |+++ .++.++|-.|... +.++|++++.
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~-------~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNP-------EIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccH-------HHHHHHHHHHHHh-hHHHHHHHHH
Confidence 2222 378889999999999999999999999998 9888 9999999999999 9999999999
Q ss_pred HHHHcC
Q 008887 516 LAAAHN 521 (550)
Q Consensus 516 ~al~~~ 521 (550)
++++..
T Consensus 174 KAV~~~ 179 (906)
T PRK14720 174 KAIYRF 179 (906)
T ss_pred HHHHHH
Confidence 998764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.2e-07 Score=89.01 Aligned_cols=144 Identities=17% Similarity=0.136 Sum_probs=107.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
....++--+...+..++++.|+.+-+++++.+|.+.+++...|.++...|+.++|+-.|+.|..+ .|..-
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-----ap~rL----- 368 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-----APYRL----- 368 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-----chhhH-----
Confidence 45566677778899999999999999999999999999999999999999999999999999999 44433
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc-----------------------------ccccchhHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK-----------------------------SKAHYYDGLVVLA 498 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~-----------------------------~~~~~~~~~~~La 498 (550)
+.|..+-.+|...|+++||...-+.+++.- +.+.. -.+.+..+...+|
T Consensus 369 --~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 369 --EIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred --HHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHH
Confidence 266778888888888888887777776665 44430 0011335555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 499 SALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 499 ~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
+++...|++++++..+++.+...|+.
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhcccc
Confidence 55555555555555555555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=87.50 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=111.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCC-------C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEP-------D--------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p-------~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
+.|..+++.|+|..|...|++|++.-. + -..++.+++.+|.+.++|.+|+++..++++. +
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----~ 287 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-----D 287 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----C
Confidence 788899999999999999999988321 1 1457889999999999999999999999999 8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA-EKYLRLA 517 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA-~~~l~~a 517 (550)
|.+. .+.|..|.++...|+|+.|+..|+++++.+ |.+. .+...+..|..+..++.+. .+.|.+.
T Consensus 288 ~~N~-------KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nk-------a~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 288 PNNV-------KALYRRGQALLALGEYDLARDDFQKALKLE-PSNK-------AARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred CCch-------hHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 388999999999999999999999999998 9888 8888888888777766555 6788888
Q ss_pred HHcCC
Q 008887 518 AAHNP 522 (550)
Q Consensus 518 l~~~p 522 (550)
+..-+
T Consensus 353 F~k~~ 357 (397)
T KOG0543|consen 353 FAKLA 357 (397)
T ss_pred hhccc
Confidence 76543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=74.02 Aligned_cols=101 Identities=25% Similarity=0.261 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
|+.+++.|..+-..|+.++|+.+|++++....+. .+++..+|..+...|++++|+..+++++.. .|+++...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-----~p~~~~~~ 75 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-----FPDDELNA 75 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccH
Confidence 3567899999999999999999999999965443 578999999999999999999999999988 77754222
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
.....++.++...|+.++|++.+-.++.-
T Consensus 76 ----~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 76 ----ALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 13446889999999999999999877654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.3e-06 Score=87.39 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=112.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHhh--------------
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-----LLEEAVEYLECAISKLF-------------- 434 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-----~~~eA~~~~~~al~l~~-------------- 434 (550)
..|..++..|++++|...|+..++.+|++...+..+..+..... +.+.-.+.|++......
T Consensus 43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~ 122 (517)
T PF12569_consen 43 KRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE 122 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC
Confidence 78999999999999999999999999999999988888873222 22322333322211100
Q ss_pred ----------------hcC--------------------------------------CCC---ChhhHHHHHHHHHHHHH
Q 008887 435 ----------------LAG--------------------------------------HPT---EPEAIDLLIVASQWSGV 457 (550)
Q Consensus 435 ----------------~~~--------------------------------------~p~---~~~~~~~l~~a~~~lg~ 457 (550)
..| ... ..+....+..+++.++.
T Consensus 123 g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAq 202 (517)
T PF12569_consen 123 GDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQ 202 (517)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHH
Confidence 000 000 01112222337788999
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.|...|++++|+++.+++|+.. |+.+ +.+...|++|...|++++|.+.++.+..++..+.-.-..+.+
T Consensus 203 hyd~~g~~~~Al~~Id~aI~ht-Pt~~-------ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAIEHT-PTLV-------ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK 270 (517)
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence 9999999999999999999998 9888 999999999999999999999999999999887654444433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-07 Score=73.41 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
|+-+.++.++|.+|...|++++|+++|++++++.... .+ ....+..+++++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-GD----DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-TT----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-CC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446789999999999999999999999999983222 21 22233458999999999999999999999999875
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.5e-07 Score=88.35 Aligned_cols=108 Identities=24% Similarity=0.272 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
....|+.|+++|+|++|+.||.+++.. +|.++ . .+.+.+.+|++++++..|...|..++.++ ..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~-----~P~Np-V------~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~--- 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV-----YPHNP-V------YHINRALAYLKQKSFAQAEEDCEAAIALD-KL--- 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc-----CCCCc-c------chhhHHHHHHHHHHHHHHHHhHHHHHHhh-HH---
Confidence 566899999999999999999999999 88777 2 67789999999999999999999999997 53
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+..+|...+.+-..+|+..||.+.++.+|++.|+..+..+.+..
T Consensus 164 ----Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 164 ----YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred ----HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 44899999999999999999999999999999999998887765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-06 Score=87.99 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=106.4
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.+-..+...++++.|++.+++..+.+|+ +...++.++...++..+|++.+.+++.. +|.+. + ...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~-----~p~d~---~----LL~ 238 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKE-----NPQDS---E----LLN 238 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCH---H----HHH
Confidence 4555666678999999999999888865 6677999999999999999999999988 77664 2 444
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
..+..+...++++.|++..+++++.. |.+- +.|+.||.+|.+.|++++|...++.+--.
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f-------~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELS-PSEF-------ETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-chhH-------HHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 58999999999999999999999998 8777 99999999999999999999887755443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-07 Score=72.60 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.++.++|.+|..+|++++|+++|++++++. ...+.++...+.++.++|.++...|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 478899999999999999999999999884 4445455667899999999999999999999999999876
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-06 Score=71.89 Aligned_cols=113 Identities=23% Similarity=0.194 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.+..++.-|...++.|+|++|++.|+..... .|..+... .+...++.+|++.|++++|+..+++.++++ |
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~----qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAE----QAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-P 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 4577899999999999999999999999888 77666333 366789999999999999999999999998 8
Q ss_pred CCccccccchhHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHcCCCcHHHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGR---------------NAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~---------------~~eA~~~l~~al~~~p~~~~~~ 528 (550)
+.+ ....+++..|.++.++.+ ..+|...|+++++..|+..-+.
T Consensus 79 ~hp----~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 79 THP----NVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred CCC----CccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 877 555799999999998877 7889999999999999876543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.7e-07 Score=88.22 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=106.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC--CC----ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE--PD----NINALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~--p~----~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
..+...+..+++++|+++|++|+... -+ -+.++..+|.+|... |++++|+++|++|++.....+.+ .
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~------~ 152 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP------H 152 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H------H
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh------h
Confidence 34444455559999999999999854 22 256788999999999 99999999999999995332211 1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
........+|.++.+.|+|++|++.|+++.... -+....+...-..+...+.|+...||...|.+.+++....+|.+..
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 122366789999999999999999999988763 2222222223345667788999999999999999999999987643
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=80.73 Aligned_cols=138 Identities=22% Similarity=0.218 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
-+++.|..|-..|-.+-|.-.|.++|.++|+-+++.+.+|..+...|+|+.|.+.|...+++ +|.+. .
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-----Dp~y~-Y------ 134 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN-Y------ 134 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----CCcch-H------
Confidence 34566777777777777778888888888888888888888888888888888888888888 77775 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc------------------------------------------
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA------------------------------------------ 488 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~------------------------------------------ 488 (550)
+..|.|..++.-|++.-|.+.+.+-.+.+ |+||--..
T Consensus 135 a~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki 213 (297)
T COG4785 135 AHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI 213 (297)
T ss_pred HHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc
Confidence 66778888888888888888888777776 66652100
Q ss_pred ---------------------cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 489 ---------------------HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 489 ---------------------~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+..++++.+|..|...|+.++|...|+-++..+
T Consensus 214 S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 214 SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 157889999999999999999999999888765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.2e-06 Score=71.50 Aligned_cols=101 Identities=21% Similarity=0.132 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
++-..|......|+.+.|++.|.+++...|+.+.+|++.++++..+|+.++|++.+++++++. ++... .-+.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr----tacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR----TACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch----HHHH
Confidence 344677788899999999999999999999999999999999999999999999999999994 33322 2223
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
++...|..|..+|+.++|...|+.+.++.
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 67779999999999999999999999987
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.7e-07 Score=69.42 Aligned_cols=67 Identities=25% Similarity=0.424 Sum_probs=60.2
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+++.|++++|++.|+++++.. |++. .+++.+|.||.+.|++++|.+.+++++..+|++..++..+.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNP-------EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSH-------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 357899999999999999998 9888 999999999999999999999999999999999877766554
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.4e-06 Score=82.03 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL---LEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~---~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
+++.+.-+|..|+..|+++.|...|.+|+++.|++++.+..+|.+++...+ ..++.+.+++++.. +|.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-----D~~~i-- 227 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-----DPANI-- 227 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----CCccH--
Confidence 777888999999999999999999999999999999999999999987654 45899999999999 88887
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+.+.+|..++++|+|++|+..++..++..+++++
T Consensus 228 -----ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 228 -----RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred -----HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 37788999999999999999999999999844444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-05 Score=74.82 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=124.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..++.+++.|...++.|++++|++.|+++...+|.. ..+...++.++++.+++++|+...++-+++ +|++++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~~~n 106 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPTHPN 106 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCCCC
Confidence 578899999999999999999999999999988765 478889999999999999999999999999 999885
Q ss_pred hHHHHHHHHHHHHHHHH--------HhcCHHHHHHHHHHHhcCCCCCCccccc----------cchhHHHHHHHHHHhcC
Q 008887 444 AIDLLIVASQWSGVACI--------RQEKWEEGIAHLERIGNLKEPEEPKSKA----------HYYDGLVVLASALCNVG 505 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~--------~~g~~~eA~~~~~~al~~~~p~~~~~~~----------~~~~~~~~La~~~~~~g 505 (550)
.. .++|-.|.++. .+....+|+..|++.++.. |+..-... ..+.--...|+.|.+.|
T Consensus 107 ~d----Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 107 AD----YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred hh----HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 43 24556677665 3445568888999999987 77642211 13344557788899999
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 506 RNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 506 ~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
.+..|..-++++++.-|+.......|.
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~ 208 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALA 208 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHH
Confidence 999999999999998777665444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-06 Score=87.01 Aligned_cols=156 Identities=20% Similarity=0.123 Sum_probs=128.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+.--+..+|..+...++|++|+++|+.|++.+|+|...+..++....+.++++.....-.+.+++ .|+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-----~~~~r----- 143 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-----RPSQR----- 143 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhhhH-----
Confidence 33344589999999999999999999999999999999999999999999999999998888888 55554
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc-----------------------------------cchh
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA-----------------------------------HYYD 492 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~-----------------------------------~~~~ 492 (550)
..|..+++++...|++..|.+..+...+.. ...+.... +...
T Consensus 144 --a~w~~~Avs~~L~g~y~~A~~il~ef~~t~-~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla 220 (700)
T KOG1156|consen 144 --ASWIGFAVAQHLLGEYKMALEILEEFEKTQ-NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLA 220 (700)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHH
Confidence 267789999999999999999888776654 21111111 1334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHH
Q 008887 493 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDE 536 (550)
Q Consensus 493 ~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~ 536 (550)
.....|..+.++|+.++|...|+..+..+|++-.+...+.....
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 45567888999999999999999999999999999888877654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7e-06 Score=86.31 Aligned_cols=142 Identities=18% Similarity=0.083 Sum_probs=128.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++..+.-+.....+++.++|+.+++++|+.+|++...|..+|+++.+.++.+.|.+.|...++. .|... .
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-----cP~~i-p--- 720 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-----CPNSI-P--- 720 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-----CCCCc-h---
Confidence 45566677788889999999999999999999999999999999999999999999999999999 78766 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.|..++..-.+.|+.-.|...++++.-.+ |.+. ..|...-+.-.+.|+.++|.....++|+-.|+....
T Consensus 721 ---LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~-------~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 721 ---LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNA-------LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred ---HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcc-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 67779999999999999999999999887 9888 888888899999999999999999999999998876
Q ss_pred HH
Q 008887 528 LE 529 (550)
Q Consensus 528 ~~ 529 (550)
|.
T Consensus 790 Wa 791 (913)
T KOG0495|consen 790 WA 791 (913)
T ss_pred HH
Confidence 64
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=86.89 Aligned_cols=142 Identities=19% Similarity=0.087 Sum_probs=105.4
Q ss_pred HHH-HHHHHHHHcCCCCChHHHHHHHHhhCC-----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 371 ELI-ALSVKFLSKGDKERPIPLLQLALNKEP-----D-NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 371 ~l~-~la~~~~~~g~~~~A~~~~~~aL~~~p-----~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+++ ..|..|...|++++|.+.|.++.+..- . ...++...+.+|.+. ++++|+++|++|+++....|++...
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a- 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA- 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH-
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH-
Confidence 444 778889999999999999999977431 1 234556666666555 9999999999999996544443333
Q ss_pred hHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 444 AIDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+..+|.+|... |++++|+++|++|++.. ..+. ........+..+|.++.+.|+|++|++.|+++....
T Consensus 114 -----A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y-~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 114 -----AKCLKELAEIYEEQLGDYEKAIEYYQKAAELY-EQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp -----HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 23777899999999 99999999999999985 2222 223345788899999999999999999999998754
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=66.69 Aligned_cols=68 Identities=28% Similarity=0.350 Sum_probs=62.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 456 g~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
..+|...+++++|+++++++++.+ |+++ ..+..+|.++.++|++++|.+.++++++.+|++.......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~-------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDP-------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccc-------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 567889999999999999999998 9888 9999999999999999999999999999999988766544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.7e-06 Score=77.16 Aligned_cols=111 Identities=26% Similarity=0.258 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.+..++..|..++..|+|++|++.|++.+.. .|..+... .+.+.+|.++++.|++++|+..+++.++.. |
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~----~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAP----QAQLMLAYAYYKQGDYEEAIAAYERFIKLY-P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHH----HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-C
Confidence 5678999999999999999999999999999 78766443 366789999999999999999999999998 8
Q ss_pred CCccccccchhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCcHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVG-----------RNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g-----------~~~eA~~~l~~al~~~p~~~~ 526 (550)
+.+ ....+++.+|.++.... ...+|...++..++..|+..-
T Consensus 74 ~~~----~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 74 NSP----KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp T-T----THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred CCc----chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence 776 55578999999976553 345899999999999998754
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-06 Score=90.71 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHH----------------------------HHcCCHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQ----------------------------LQKGLLEEAVE 424 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~----------------------------~~~g~~~eA~~ 424 (550)
......|...|+.++|.....+-++ .|.++..|..+|.+. ...++|+++.+
T Consensus 428 ~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 428 DPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADK 506 (777)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHH
Confidence 3666788888888888888888877 444444444444333 33455555666
Q ss_pred HHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 425 ~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
+++..+++ +|... ..|+++|.|..+.+++..|.++|.+++..+ |+.. ++|.+++.+|.+.
T Consensus 507 hle~sl~~-----nplq~-------~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~-------eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 507 HLERSLEI-----NPLQL-------GTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNA-------EAWNNLSTAYIRL 566 (777)
T ss_pred HHHHHhhc-----Cccch-------hHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCch-------hhhhhhhHHHHHH
Confidence 66665555 44443 155566666666666666666666666665 5544 6666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 505 GRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 505 g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
|+..+|...++++++-+-++-..|.+.
T Consensus 567 ~~k~ra~~~l~EAlKcn~~~w~iWENy 593 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKCNYQHWQIWENY 593 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCCCeeeech
Confidence 666666666666666554444444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-06 Score=82.55 Aligned_cols=99 Identities=20% Similarity=0.109 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
-+.|..|+.+|+|++|+.+|.+++..+|.++-.+.+.+.+|++.++|..|....+.|+.+ +. .+..+|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----------d~-~Y~KAY 168 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----------DK-LYVKAY 168 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----------hH-HHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999988 11 122488
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
...|.+-..+|+.+||.+.++.++++. |+..
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LE-P~~~ 199 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALE-PKNI 199 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhC-cccH
Confidence 889999999999999999999999997 8765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.4e-07 Score=90.34 Aligned_cols=140 Identities=17% Similarity=0.171 Sum_probs=114.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++|..|+-.|+|++|+..-+.-|.+..+ .-+++.++|+++.-.|+++.|.++|++++.++.+.++.... .
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE-A--- 275 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE-A--- 275 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH-H---
Confidence 6777889999999999988888775432 34688999999999999999999999999887666655544 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...|.+|..|.-..++++|+.++++-+.+ ...-.+......++.-||.++...|..++|..+.+..+++.
T Consensus 276 --QscYSLgNtytll~e~~kAI~Yh~rHLaI--AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 276 --QSCYSLGNTYTLLKEVQKAITYHQRHLAI--AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred --HHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 26788999999999999999999998877 33344445566889999999999999999998888766543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-06 Score=88.01 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=62.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA---LILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a---~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
-++++++++|..++..|+|++|+..|+++++++|++.++ |+++|.+|.++|++++|++++++|+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 488899999999999999999999999999999999865 999999999999999999999999998
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-05 Score=76.06 Aligned_cols=112 Identities=16% Similarity=0.106 Sum_probs=94.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
..+..++..|..+...|++++|++.|++++.. .|..+... .+.+++|.++++.+++++|+..+++.++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----yP~s~~a~----~a~l~la~ayy~~~~y~~A~~~~e~fi~~~- 99 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNR-----YPFGPYSQ----QVQLDLIYAYYKNADLPLAQAAIDRFIRLN- 99 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 46777889999999999999999999999999 77766332 356789999999999999999999999998
Q ss_pred CCCccccccchhHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHHcCCCcHH
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVG---------------R---NAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g---------------~---~~eA~~~l~~al~~~p~~~~ 526 (550)
|+++ ....+++.+|.++...+ | ..+|.+.+++.++..|+..-
T Consensus 100 P~~~----~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 100 PTHP----NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred cCCC----chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 8877 55689999999875554 1 35688999999999998754
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=93.47 Aligned_cols=130 Identities=16% Similarity=0.110 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH----------------
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL---------------- 448 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l---------------- 448 (550)
.+.|...|-+++++++..+.++..+|.+|..-.|...|.++|++|.++ ++++.+.....
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL-----Datdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL-----DATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CchhhhhHHHHHHHhhccccHHHHHHH
Confidence 444555555555555555555555555555555555555555555555 44333221111
Q ss_pred -------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 449 -------------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 449 -------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
...|..+|..|.+.++..+|+..|+.+++.+ |.|. ..|..+|++|...|++.-|.+.+.
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~-------n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDY-------NLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhH-------HHHHHHHHHHHhcCceehHHHhhh
Confidence 1245568888999999999999999999998 9888 999999999999999999999999
Q ss_pred HHHHcCCCcHHH
Q 008887 516 LAAAHNPQYNEL 527 (550)
Q Consensus 516 ~al~~~p~~~~~ 527 (550)
++..++|.+.-.
T Consensus 621 kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 621 KASLLRPLSKYG 632 (1238)
T ss_pred hhHhcCcHhHHH
Confidence 999999987653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.8e-06 Score=90.92 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=97.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHhhhcCCCCChh
Q 008887 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE--YLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~--~~~~al~l~~~~~~p~~~~ 443 (550)
.+.+..++..|..+..+|+.++|.+.|..|+..+|+++.+...+|.++.+.|+..-|.+ .+..++++ +|.++
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-----dp~n~- 754 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-----DPLNH- 754 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----CCCCH-
Confidence 34555567888999999999999999999999999999999999999999999988888 99999999 99988
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
++|+++|.++.++|+.++|.++|+-+++++ +.+|
T Consensus 755 ------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe-~S~P 788 (799)
T KOG4162|consen 755 ------EAWYYLGEVFKKLGDSKQAAECFQAALQLE-ESNP 788 (799)
T ss_pred ------HHHHHHHHHHHHccchHHHHHHHHHHHhhc-cCCC
Confidence 499999999999999999999999999997 7666
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=79.95 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+...-....++..++++.|.+.++.+-+.+.+..-+....+++.+..| .+.+|...|++..+. .+..+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-----~~~t~----- 201 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-----FGSTP----- 201 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-----S--SH-----
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-----cCCCH-----
Confidence 344456678999999999999999998888887777777777777777 588999999997555 33333
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCcHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN-AEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~-~eA~~~l~~al~~~p~~~~ 526 (550)
...+.++.|+..+|++++|.+.++++++.+ |+++ +++.+++.+....|+. +.+.+++.+....+|+++-
T Consensus 202 --~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~-------d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 202 --KLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP-------DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp --HHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH-------HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH-------HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 256689999999999999999999999997 8877 8999999999999988 6677788888889999886
Q ss_pred HHHHHH
Q 008887 527 LLEQLE 532 (550)
Q Consensus 527 ~~~~l~ 532 (550)
....-+
T Consensus 272 ~~~~~~ 277 (290)
T PF04733_consen 272 VKDLAE 277 (290)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=89.87 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.+++.+|.+|-..|+.++|.+.|+++++.+|+++.+++++|..|... +.++|++++.+|++...... . ...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~k--q---~~~--- 187 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKK--Q---YVG--- 187 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhh--c---chH---
Confidence 47789999999999999999999999999999999999999999999 99999999999988731000 0 000
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.--++...|.....+.+.=....++..... . .......+.-+-.+|.+.+++++++..++.+++++|.+..++.
T Consensus 188 ~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~--~----~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 188 IEEIWSKLVHYNSDDFDFFLRIERKVLGHR--E----FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHhhh--c----cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 011123333333344444444444433321 0 1123456667778999999999999999999999999988877
Q ss_pred HHHh
Q 008887 530 QLEN 533 (550)
Q Consensus 530 ~l~~ 533 (550)
.+..
T Consensus 262 ~l~~ 265 (906)
T PRK14720 262 ELIR 265 (906)
T ss_pred HHHH
Confidence 6654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.9e-06 Score=72.40 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
...+.+|..++..|++++|.+.|++++...++. ..+...+|.++...|++++|+..++..- - .+..+
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~-----~~~~~---- 118 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-D-----EAFKA---- 118 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-C-----cchHH----
Confidence 355689999999999999999999999987665 4578899999999999999999986631 1 11111
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
.++..+|.++...|++++|++.|++++
T Consensus 119 ---~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 119 ---LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 255679999999999999999999875
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-06 Score=66.32 Aligned_cols=62 Identities=31% Similarity=0.457 Sum_probs=59.0
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 376 a~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
...|+..+++++|++.++++++.+|+++..+..+|.++...|++++|.+.++++++. +|+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcH
Confidence 457899999999999999999999999999999999999999999999999999999 88776
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3e-05 Score=81.04 Aligned_cols=154 Identities=18% Similarity=0.098 Sum_probs=113.5
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh------------------
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF------------------ 434 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~------------------ 434 (550)
++.|.++++.+..|+|+..++ -.++.+..+....|+++++.|+|++|++.|+..++-..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 588999999999999999998 45666677888999999999999999999988754310
Q ss_pred ----hcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC----CCCCc---cccccchhHHHHHHHHHHh
Q 008887 435 ----LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK----EPEEP---KSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 435 ----~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~----~p~~~---~~~~~~~~~~~~La~~~~~ 503 (550)
.-..|..++ ...+..||.+..+...|+|.+|++.++++++++ +.++. +-......+...++-++..
T Consensus 160 ~~~~~q~v~~v~e---~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 160 QVQLLQSVPEVPE---DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hHHHHHhccCCCc---chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 000111111 011367889999999999999999999994332 01111 1112245678899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 504 VGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 504 ~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
+|+.+||...|...++.++.+......+.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~ 265 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEPSLAVAV 265 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCchHHHHHh
Confidence 99999999999999999988876554443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-05 Score=72.29 Aligned_cols=101 Identities=23% Similarity=0.197 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+-..|..++..|+|++|..-|..||...|... .++.+.|.++.+++.++.|++...+++++ +|++.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-----~pty~--- 168 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-----NPTYE--- 168 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----CchhH---
Confidence 334678899999999999999999999998753 46778999999999999999999999999 77776
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+....+.+|.+..+|++|++.|.+.++.+ |...
T Consensus 169 ----kAl~RRAeayek~ek~eealeDyKki~E~d-Ps~~ 202 (271)
T KOG4234|consen 169 ----KALERRAEAYEKMEKYEEALEDYKKILESD-PSRR 202 (271)
T ss_pred ----HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-cchH
Confidence 255578999999999999999999999998 7543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.1e-06 Score=85.43 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhH---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG---LVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~---~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+++++|.+|...|+|++|+..|+++++++ |++. ++ |+++|.||..+|+.++|++++++++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~a-------eA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELN-PNPD-------EAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCch-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 488999999999999999999999999998 8776 54 999999999999999999999999997
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.3e-06 Score=64.00 Aligned_cols=67 Identities=30% Similarity=0.492 Sum_probs=56.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchh
Q 008887 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 492 (550)
Q Consensus 413 ~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~ 492 (550)
+++.|++++|++.|++++.. +|++. . +++.+|.++.+.|++++|.+.+++++..+ |+++ .
T Consensus 1 ll~~~~~~~A~~~~~~~l~~-----~p~~~-~------~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~~~-------~ 60 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR-----NPDNP-E------ARLLLAQCYLKQGQYDEAEELLERLLKQD-PDNP-------E 60 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH-----TTTSH-H------HHHHHHHHHHHTT-HHHHHHHHHCCHGGG-TTHH-------H
T ss_pred ChhccCHHHHHHHHHHHHHH-----CCCCH-H------HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCHH-------H
Confidence 36789999999999999999 88877 3 77789999999999999999999999997 7666 5
Q ss_pred HHHHHHH
Q 008887 493 GLVVLAS 499 (550)
Q Consensus 493 ~~~~La~ 499 (550)
.+..++.
T Consensus 61 ~~~l~a~ 67 (68)
T PF14559_consen 61 YQQLLAQ 67 (68)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6655554
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.5e-05 Score=66.18 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+-..|......|+.++|++.|.+++.+ .|..+ . +|++.+.++.-+|+.++|++.+++++++. .....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l-----~P~ra-S------ayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~tr 112 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCL-----APERA-S------AYNNRAQALRLQGDDEEALDDLNKALELA-GDQTR 112 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHh-----cccch-H------hhccHHHHHHHcCChHHHHHHHHHHHHhc-Cccch
Confidence 445788899999999999999999999 77776 3 88999999999999999999999999996 32232
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
. .-.++...|.+|...|+.+.|+..|+.+.++...+..
T Consensus 113 t---acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 113 T---ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred H---HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 2 2367889999999999999999999999888766553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.18 E-value=3e-05 Score=83.09 Aligned_cols=137 Identities=18% Similarity=0.119 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.++-+|+.|-..|++++|+++.++|++..|..++.+...|.++-+.|++++|.++++.|-.+ +..+. .
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~DR-y------ 263 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL-----DLADR-Y------ 263 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----ChhhH-H------
Confidence 44588999999999999999999999999999999999999999999999999999999999 55555 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccccc-c--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH-Y--YDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~-~--~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.....+..+.+.|+.++|.+.+....+.+ . ++....+ . ......-|.+|.+.|++..|...|..+.+.-
T Consensus 264 iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~-~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 264 INSKCAKYLLRAGRIEEAEKTASLFTRED-V-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCC-C-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33456778889999999999998876553 2 2211111 1 2233567899999999999999999887653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-05 Score=83.87 Aligned_cols=111 Identities=23% Similarity=0.230 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
...+...|+..+..|++++|.+.+.++++. +|.++ .+|+.||.+|.++|+.+++....-.|.-++ |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq-----dp~~~-------~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~ 205 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ-----DPRNP-------IAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PK 205 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----Cccch-------hhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CC
Confidence 456677888888999999999999999999 88887 389999999999999999999999999998 98
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+. +.|..++....++|++++|+-+|.++++.+|.+.+....-..
T Consensus 206 d~-------e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 206 DY-------ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred Ch-------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 88 999999999999999999999999999999999876554433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.3e-06 Score=91.58 Aligned_cols=200 Identities=14% Similarity=0.083 Sum_probs=137.3
Q ss_pred hhhhHHHHHHHHHhcCHHHHhhhCCCCCCCCCCCCCCccccccCcCCCCchh----hccCccCCCChHHHHHHHHHHHHc
Q 008887 307 VTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAK----QLKISVENLTPKELIALSVKFLSK 382 (550)
Q Consensus 307 ~~s~~~~~~q~~~~~~p~~r~~l~i~~~~~~~~~~~s~~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~la~~~~~~ 382 (550)
..+-++.-..........+++++.+......+++..........+--...+. ..+-+.. .--.+....|..|...
T Consensus 497 ~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~-~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 497 FLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF-ACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH-HHHhhhhhccccccCc
Confidence 3444444444555556678889999877766554432211110000000000 0000000 1112333688899999
Q ss_pred CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh
Q 008887 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ 462 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~ 462 (550)
+++.+|+..|+.+++.+|.+.++|..+|.+|...|++..|++.|.++..+ +|.+. . +.+..+......
T Consensus 576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-----rP~s~-y------~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-----RPLSK-Y------GRFKEAVMECDN 643 (1238)
T ss_pred cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-----CcHhH-H------HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 66665 2 667789999999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
|+|++|+..++..+... ...........+.+...+..+...|-..+|...+++.++.
T Consensus 644 GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999988764 3333222335567777777777777777777777776553
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.8e-06 Score=83.85 Aligned_cols=136 Identities=20% Similarity=0.198 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
.-.|..+...|++++|++.+.+. ++.++......+|+..++++.|.+.++..-+. +.+.. + ..
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~~-----l--~q 168 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DEDSI-----L--TQ 168 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCHH-----H--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcHH-----H--HH
Confidence 35667788889988888877653 67899999999999999999999999887655 22111 1 22
Q ss_pred HHHHHHHHHhc--CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 453 QWSGVACIRQE--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 453 ~~lg~~~~~~g--~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
..-+.+....| ++.+|...|++..+.. +..+ ..+..+|.|+..+|++++|.+.++++++.+|++++...+
T Consensus 169 La~awv~l~~g~e~~~~A~y~f~El~~~~-~~t~-------~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDAFYIFEELSDKF-GSTP-------KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHCCS---SH-------HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcc-CCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 22333444445 6999999999988775 5555 788999999999999999999999999999999997776
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+--
T Consensus 241 liv 243 (290)
T PF04733_consen 241 LIV 243 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.9e-06 Score=83.08 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=101.5
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+...|..+++.|++...+..|+.|++..-++. .+|..+|++|...+||++|+++...-+.+.+..++.... .
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGE-A--- 95 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGE-A--- 95 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcc-c---
Confidence 34567789999999999999999999887764 456789999999999999999987766665444444333 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
.+.-++|..+.-.|.|++|+.++++-+.. .+.-.++.....++|++|.+|...|+
T Consensus 96 --KssgNLGNtlKv~G~fdeA~~cc~rhLd~--areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 96 --KSSGNLGNTLKVKGAFDEALTCCFRHLDF--ARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred --cccccccchhhhhcccchHHHHHHHHhHH--HHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 26678999999999999999999998877 33444445566899999999988875
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.2e-05 Score=77.70 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHHHHc---------CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 368 TPKELIALSVKFLSK---------GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 368 ~~~~l~~la~~~~~~---------g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
.+.++.-+|.+++.. .+..+|.++.++|++.+|.|+.++..+|.++...++++.|...|++|+.+ +
T Consensus 294 ~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L-----~ 368 (458)
T PRK11906 294 KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH-----S 368 (458)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc-----C
Confidence 355555666665544 12335889999999999999999999999999999999999999999999 8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHH--HHHhcCCHHHHHHHHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS--ALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~--~~~~~g~~~eA~~~l~~ 516 (550)
|+.. .+++..|....-.|+.++|++.+++++++. |... .+-...-. .|. ....++|+..|-+
T Consensus 369 Pn~A-------~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-P~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 369 TDIA-------SLYYYRALVHFHNEKIEEARICIDKSLQLE-PRRR-------KAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred CccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-chhh-------HHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 8887 388899999999999999999999999997 7544 22222222 455 4458999998876
Q ss_pred HHHc
Q 008887 517 AAAH 520 (550)
Q Consensus 517 al~~ 520 (550)
-.+.
T Consensus 433 ~~~~ 436 (458)
T PRK11906 433 ETES 436 (458)
T ss_pred cccc
Confidence 5543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00015 Score=68.06 Aligned_cols=117 Identities=23% Similarity=0.196 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hhcCCCCChhhHHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKL---FLAGHPTEPEAIDLLI---VASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~---~~~~~p~~~~~~~~l~---~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.++...|+-+++.|+|++|...|+.|+-.. .....|.++++.+.-. -.+.|++.|+...|+|-++++.+...+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 344455555556666666665555554321 2233555554432211 1567899999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.+ |++. .+++..|.++...=+.++|.+.+.++++++|......
T Consensus 259 ~~-~~nv-------KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 259 HH-PGNV-------KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred cC-CchH-------HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 98 9888 9999999999999999999999999999999987644
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00017 Score=72.31 Aligned_cols=129 Identities=24% Similarity=0.340 Sum_probs=107.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+|+-....+..+...|++++|.+..+++++..-+.- ....++ ...-++.+.=++..++.+.. .|++| .
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~-----h~~~p-~--- 329 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQ-----HPEDP-L--- 329 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHh-----CCCCh-h---
Confidence 455666889999999999999999999999765543 222333 34668888999999999999 78777 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+..+|..+++.+.+.+|.++|+.+++.. ++ . ..+..+|.++.+.|+..+|.+.+++++..
T Consensus 330 ---L~~tLG~L~~k~~~w~kA~~~leaAl~~~-~s-~-------~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 ---LLSTLGRLALKNKLWGKASEALEAALKLR-PS-A-------SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHHhcC-CC-h-------hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67789999999999999999999999996 43 3 57889999999999999999999998853
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.7e-05 Score=75.17 Aligned_cols=147 Identities=13% Similarity=0.045 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
....++.++...+.++++++.|++|++.... ...++..+|..+.+.+|+++|.-+..+|.++....+- .+. .
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~-~ 201 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDW-S 201 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-Cch-h
Confidence 3446888999999999999999999995432 2457789999999999999999999999998422111 111 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..+-..+.|.+++++..+|+..+|.++++++.++ .-..+++.-++.....+|.+|...|+.|.|..-|+.+...-
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl--al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL--ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH--HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 2222337789999999999999999999999877 23333444566888899999999999999999999987654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0001 Score=72.58 Aligned_cols=149 Identities=16% Similarity=0.120 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHhhhcCCCCChhh-H-
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI------SKLFLAGHPTEPEA-I- 445 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al------~l~~~~~~p~~~~~-~- 445 (550)
=+|..++..|+|++|++.|+-+.+.+.-+.+.+.+++.+++..|.|.+|....+++- ++.+.....-+.+. .
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence 478899999999999999999999888888999999999999999999988765541 11111111111100 0
Q ss_pred ------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 446 ------DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 446 ------~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+...+-...++.+.+-.-.|.+|++.|.+++..+ |+.. ....++|.||.+++-++-+.+.++-.++
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-~ey~-------alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-PEYI-------ALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-hhhh-------hhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 0000122345666667778999999999999886 7555 7788999999999999999999999999
Q ss_pred cCCCcHHHHHH
Q 008887 520 HNPQYNELLEQ 530 (550)
Q Consensus 520 ~~p~~~~~~~~ 530 (550)
..|+..-+.+.
T Consensus 214 q~pdStiA~NL 224 (557)
T KOG3785|consen 214 QFPDSTIAKNL 224 (557)
T ss_pred hCCCcHHHHHH
Confidence 99998766553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.4e-05 Score=77.76 Aligned_cols=97 Identities=23% Similarity=0.247 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+|+...-+|..+...++..+|++.++++++.+|.+...+...+..+...++++.|++..+++++. .|.+-
T Consensus 199 ~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-----sP~~f----- 268 (395)
T PF09295_consen 199 DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL-----SPSEF----- 268 (395)
T ss_pred CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CchhH-----
Confidence 45566678999999999999999999999999999999999999999999999999999999999 67665
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
..|+.|+.+|...|++++|+..+..+-
T Consensus 269 --~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 269 --ETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred --HHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 389999999999999999998887544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00035 Score=81.40 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
.+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555566666666665555544 23445555555555555555555555555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=76.34 Aligned_cols=133 Identities=17% Similarity=0.093 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.+++.--..+...|+|++|+....+.+...|++..+......++.+.++|++|++..++-... ....
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---------~~~~---- 79 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---------LVIN---- 79 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---------hhcc----
Confidence 455555567788899999999999999999999999999999999999999999655443322 1111
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
...+.-+.|.+++++.|+|++.++- ++ +.+. ......|..++++|+|++|...|+...+.+.++.+
T Consensus 80 ~~~fEKAYc~Yrlnk~Dealk~~~~-~~---~~~~-------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 80 SFFFEKAYCEYRLNKLDEALKTLKG-LD---RLDD-------KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred hhhHHHHHHHHHcccHHHHHHHHhc-cc---ccch-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 0124689999999999999999983 22 3333 57889999999999999999999999887755544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.1e-05 Score=67.51 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-----------NAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-----------~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
.-+++|+.-|++|+.++ |+.. +++.++|.+|..++. +++|.++|+++...+|++..+++.|
T Consensus 49 ~miedAisK~eeAL~I~-P~~h-------dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 49 KMIEDAISKFEEALKIN-PNKH-------DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHHHH--TT-H-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-CchH-------HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 34678888899999998 8777 899999999876664 7888999999999999999999888
Q ss_pred Hhh
Q 008887 532 ENN 534 (550)
Q Consensus 532 ~~~ 534 (550)
+-.
T Consensus 121 e~~ 123 (186)
T PF06552_consen 121 EMA 123 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00046 Score=80.44 Aligned_cols=130 Identities=19% Similarity=0.177 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
....+...|.+.|++++|.+.|++..+. .|+ ...+..+...|.+.|++++|.+.+++..+. +.... .
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-----G~~pd-~---- 684 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-----GIKLG-T---- 684 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCC-H----
Confidence 3345566677777777777777777664 233 456667777777777777777777776654 11111 1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
..+..+..+|.+.|++++|.+.|++..+..-..+. ..|..+...|.+.|+.++|.+.+++..+
T Consensus 685 -~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv-------vtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 685 -VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV-------STMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 15556666777777777777777765443211122 4566666677777777777777766554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00025 Score=67.30 Aligned_cols=142 Identities=14% Similarity=0.128 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
..+-++..+.-.|+|.-....+.+.++.+ |.++.....+|.+.++.||.+.|..+|+++-+.. +.-+. .+.-.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~----~kL~~--~q~~~ 252 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT----QKLDG--LQGKI 252 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH----hhhhc--cchhH
Confidence 34467778888999999999999999988 6678888899999999999999999999654332 11111 11111
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
....+.+.++.-++++.+|...+.++++.+ +.++ .+..+.|.|+.-.|+..+|++..+.++...|...-
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~-------~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNA-------VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccC-CCch-------hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 255678888999999999999999999998 8888 88899999999999999999999999999988653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=84.60 Aligned_cols=142 Identities=19% Similarity=0.074 Sum_probs=106.0
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
...+..+...|++++|..+++++++..+.. ..+...+|.++...|++++|..+++++++.....+++ ..
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~------~~ 529 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY------HY 529 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch------HH
Confidence 356788899999999999999999854432 2356789999999999999999999999884222111 11
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc-cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP-KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~-~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+..++|.++..+|++++|.+.++++++.. .... .........+..+|.++...|++++|.+.+++++...
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLI-EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 12266789999999999999999999998864 2211 0111122345678888888999999999998887753
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00076 Score=61.00 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=99.8
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
....=|.++......+.++..|. ..-.+.+|+...+.|++.||..+|++++.-- .-.++ . ....++.+
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~----fA~d~---a----~lLglA~A 133 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGI----FAHDA---A----MLLGLAQA 133 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc----cCCCH---H----HHHHHHHH
Confidence 33344555555555555655555 3557889999999999999999999997652 22222 1 34468999
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.+..++..+|...+++..+.. |... ..+....+|+.|...|++++|+..++.++...|+...
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~-pa~r-----~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYN-PAFR-----SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcC-CccC-----CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHH
Confidence 999999999999999999986 5432 2367889999999999999999999999998887653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=78.90 Aligned_cols=84 Identities=15% Similarity=0.007 Sum_probs=71.5
Q ss_pred ChHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcC
Q 008887 387 RPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464 (550)
Q Consensus 387 ~A~~~~~~aL~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~ 464 (550)
++.+..++++.. ++.++.++..+|..+...|++++|..++++|+++ +|+ . .+|..+|.++...|+
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-----~ps-~-------~a~~~lG~~~~~~G~ 468 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-----EMS-W-------LNYVLLGKVYELKGD 468 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-H-------HHHHHHHHHHHHcCC
Confidence 344555555553 7778899999999999999999999999999999 663 2 278889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCc
Q 008887 465 WEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 465 ~~eA~~~~~~al~~~~p~~~ 484 (550)
+++|++.|++|++++ |.++
T Consensus 469 ~~eA~~~~~~A~~L~-P~~p 487 (517)
T PRK10153 469 NRLAADAYSTAFNLR-PGEN 487 (517)
T ss_pred HHHHHHHHHHHHhcC-CCCc
Confidence 999999999999998 8877
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0005 Score=77.82 Aligned_cols=126 Identities=15% Similarity=0.067 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+..+...|...|+.++|+++|++..+.. .-+..++..+...+.+.|++++|.+.+++.++.. .+.+. .
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g----~~~d~-~------ 361 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG----FPLDI-V------ 361 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC----CCCCe-e------
Confidence 3355666667777777777777665532 1234566666666777777777777666666551 11111 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+..+...|.+.|++++|.+.|++..+. +. ..|..+...|.+.|+.++|.+.|++..+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~----d~-------~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRK----NL-------ISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCCC----Ce-------eeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445666666666666666666654322 12 4566666666666666666666666554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00029 Score=79.75 Aligned_cols=141 Identities=15% Similarity=0.095 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.+..+...|...|+.++|+++|++..+.. .-+..++..+...+.+.|+.++|.++|++..+. ..-.|..
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~-----~g~~p~~----- 462 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN-----HRIKPRA----- 462 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh-----cCCCCCc-----
Confidence 34467777888888888888888877643 123556777778888888888888888887664 2222322
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
..|..+...+.+.|++++|.+.+++.- .. |+ . ..|..+..++...|+.+.|...+++.+++.|++.....
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~~-~~-p~-~-------~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRAP-FK-PT-V-------NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHCC-CC-CC-H-------HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 155567888888888888888887642 21 32 2 56888888888899999999999988888887654433
Q ss_pred HH
Q 008887 530 QL 531 (550)
Q Consensus 530 ~l 531 (550)
.+
T Consensus 533 ~L 534 (697)
T PLN03081 533 VL 534 (697)
T ss_pred HH
Confidence 33
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0014 Score=63.78 Aligned_cols=148 Identities=24% Similarity=0.237 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH-
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL- 448 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l- 448 (550)
+..+..+......|++.+|...|..++...|++..+...++.+|...|+.++|...+... |.+.......
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l---------P~~~~~~~~~~ 205 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL---------PLQAQDKAAHG 205 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC---------cccchhhHHHH
Confidence 345578889999999999999999999999999999999999999999999999877543 2222111000
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--cHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ--YNE 526 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~--~~~ 526 (550)
..++..+ +.+.....+..+ +++.+..+ |+|. ++.+.+|..|...|++++|.+.+-..++.+-+ +.+
T Consensus 206 l~a~i~l---l~qaa~~~~~~~-l~~~~aad-Pdd~-------~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~ 273 (304)
T COG3118 206 LQAQIEL---LEQAAATPEIQD-LQRRLAAD-PDDV-------EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGE 273 (304)
T ss_pred HHHHHHH---HHHHhcCCCHHH-HHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcH
Confidence 0111222 222233333322 33334455 8888 99999999999999999999999999987744 445
Q ss_pred HHHHHHhhHHHH
Q 008887 527 LLEQLENNDEEF 538 (550)
Q Consensus 527 ~~~~l~~~~~~~ 538 (550)
.++++-+..+-.
T Consensus 274 ~Rk~lle~f~~~ 285 (304)
T COG3118 274 ARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHHHHhc
Confidence 666665544433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00085 Score=64.05 Aligned_cols=134 Identities=23% Similarity=0.227 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
+..-|..++..|++++|+....+ -.+.++...-..++.+..+.+-|.+.+++..++ .++. .
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---------ded~-----t 171 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---------DEDA-----T 171 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------chHH-----H
Confidence 33567788999999999988776 356677777888888999999999988888877 2121 1
Q ss_pred HHHHHHHHH----HhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 452 SQWSGVACI----RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 452 ~~~lg~~~~----~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
...||.++. ..+++.+|.-.|++.-+.. +..+ .....++.|+..+|++++|...++.++..++++++.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~-------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTP-------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCCh-------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 222444433 2356888888888877755 5555 678888888999999999999999999988888887
Q ss_pred HHHHH
Q 008887 528 LEQLE 532 (550)
Q Consensus 528 ~~~l~ 532 (550)
+.++-
T Consensus 244 L~Nli 248 (299)
T KOG3081|consen 244 LANLI 248 (299)
T ss_pred HHHHH
Confidence 76654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00069 Score=63.38 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=108.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
+....+..|..+++.++.++|++++++++++.-+- +..+..+|.+|... .++++|+.+|+++-+.. ..
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y-----k~ 146 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY-----KG 146 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH-----cc
Confidence 34455566677788889999999999999977543 33345899999866 99999999999998883 22
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
+. ....--..+...+......++|.+|+..|+++.... -++.-.+...-+-++.-|.|+.-.++.-.+...+++..++
T Consensus 147 ee-s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s-~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 147 EE-SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS-LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 22 111111144456666678899999999999987653 3332222222234556678888889999999999999999
Q ss_pred CCCcHH
Q 008887 521 NPQYNE 526 (550)
Q Consensus 521 ~p~~~~ 526 (550)
+|.+..
T Consensus 225 dP~F~d 230 (288)
T KOG1586|consen 225 DPAFTD 230 (288)
T ss_pred CCcccc
Confidence 999865
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00055 Score=79.91 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=108.4
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
..+|..+...|++++|...+++++..... ...++..+|.++...|++++|..+++++++.....+.+..+..
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~-- 572 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH-- 572 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH--
Confidence 46788899999999999999999975332 1346678899999999999999999999998533322221111
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+..+|.++...|++++|.+.+++++... .... .......+..+|.++...|++++|.+.++++..+.
T Consensus 573 --~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 573 --EFLLRIRAQLLWEWARLDEAEQCARKGLEVL-SNYQ--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh-hccC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1134568999999999999999999998874 2211 11234667789999999999999999999987753
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.5e-05 Score=50.18 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 008887 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424 (550)
Q Consensus 391 ~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~ 424 (550)
+|+++++.+|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00031 Score=65.85 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
....+-+.|..++..+.|+.|+.+|.+++.++|..+..+.+.+.+|++.++|+.+....++++++ +|+..
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-----~~N~v----- 78 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-----DPNLV----- 78 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-----ChHHH-----
Confidence 34455578888999999999999999999999999999999999999999999999999999999 44433
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.+++.+|.++.....|++|+..++++..+.
T Consensus 79 --k~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 79 --KAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred --HHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 488899999999999999999999996553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00016 Score=71.32 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=99.7
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~l 455 (550)
..++...||+.|+.+++-.+..+.+.- ....++|.++++.|+|++|...|+-+.+. +..+. +.+.++
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-----~~~~~-------el~vnL 97 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-----DDAPA-------ELGVNL 97 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-----CCCCc-------ccchhH
Confidence 357888999999999999887665443 66788999999999999999999887665 22222 256689
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCCcc----------c----------cccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPK----------S----------KAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 456 g~~~~~~g~~~eA~~~~~~al~~~~p~~~~----------~----------~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+.|++..|.|.+|....+++-+. |-+.. + -.+..+-...||.++...-.|.+|++.|+
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka~k~--pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKAPKT--PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876433 21110 0 00123344556666555667999999999
Q ss_pred HHHHcCCCcHH
Q 008887 516 LAAAHNPQYNE 526 (550)
Q Consensus 516 ~al~~~p~~~~ 526 (550)
+++.-+|+...
T Consensus 176 rvL~dn~ey~a 186 (557)
T KOG3785|consen 176 RVLQDNPEYIA 186 (557)
T ss_pred HHHhcChhhhh
Confidence 99998887654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0011 Score=76.98 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
..+..+...|...|+.++|+++|++..+. .|+ ..++..+-..+.+.|+.++|.++|++..+. ..-.|+.
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~-----~gi~P~~--- 625 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEK-----YSITPNL--- 625 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHH-----hCCCCch---
Confidence 33445666777788888888888877663 344 344555556777888888888888777644 2223322
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
..|..+..++.+.|++++|.+.+++. ... |+ . ..|..|-.++...|+.+.|....+++++++|++...
T Consensus 626 --~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~-pd-~-------~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 626 --KHYACVVDLLGRAGKLTEAYNFINKM-PIT-PD-P-------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHC-CCC-CC-H-------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 25566788888888888888888774 232 32 2 567667777777888888888888888888888776
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
...+.+.
T Consensus 694 y~ll~n~ 700 (857)
T PLN03077 694 YILLCNL 700 (857)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0003 Score=69.00 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.+..+..-|+-|++.++|..|+..|.+.+... -.++ +.....|.|.+.|....|+|..|+..+.+++..+ |
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~---dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P 150 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADP---DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-P 150 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCc---cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 34556678999999999999999999999882 2222 1222378899999999999999999999999998 8
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
... .+++.=|.|+.++.++++|...++..++++.+...+...+
T Consensus 151 ~h~-------Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~ 193 (390)
T KOG0551|consen 151 THL-------KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELR 193 (390)
T ss_pred chh-------hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 877 9999999999999999999999999888876665554443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0036 Score=57.27 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~---a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
.++........++. +.....++....++.+.- +...++..+...+++++|+..++.++.. +.+..+.
T Consensus 56 ~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---------t~De~lk 125 (207)
T COG2976 56 QYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---------TKDENLK 125 (207)
T ss_pred HHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---------chhHHHH
Confidence 34444444445555 667777777777766543 3457899999999999999999999866 2122223
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
..+-..++++...+|++|+|+..++...+.. .........|.++...|+.++|+..|+++++..++.
T Consensus 126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~---------w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 126 ALAALRLARVQLQQKKADAALKTLDTIKEES---------WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcccccc---------HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3366789999999999999999997633221 122456788999999999999999999999987443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00048 Score=66.53 Aligned_cols=143 Identities=10% Similarity=0.003 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH----------HHHHHhhhcCCC
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLE----------CAISKLFLAGHP 439 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~----------~al~l~~~~~~p 439 (550)
..+..+|.+|+...++.+|..+|++.-...|.........++.+++.+.+.+|+.... +++++...+...
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs 124 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS 124 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 3444677778888888888888888877778777777777888888888777765432 222221111000
Q ss_pred C-ChhhHHHHH---------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHH
Q 008887 440 T-EPEAIDLLI---------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 509 (550)
Q Consensus 440 ~-~~~~~~~l~---------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~e 509 (550)
. +-.....+. ....+.|...++.|++++|++-|+.+++.. --.+ ..-+++|.|+++.|+++.
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs-Gyqp-------llAYniALaHy~~~qyas 196 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS-GYQP-------LLAYNLALAHYSSRQYAS 196 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc-CCCc-------hhHHHHHHHHHhhhhHHH
Confidence 0 000000000 134557777788888888888888888875 3333 667788888888888888
Q ss_pred HHHHHHHHHHc
Q 008887 510 AEKYLRLAAAH 520 (550)
Q Consensus 510 A~~~l~~al~~ 520 (550)
|.++..+.++.
T Consensus 197 ALk~iSEIieR 207 (459)
T KOG4340|consen 197 ALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHHh
Confidence 88877666543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00045 Score=73.93 Aligned_cols=124 Identities=26% Similarity=0.207 Sum_probs=100.5
Q ss_pred CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh
Q 008887 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ 462 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~ 462 (550)
.+.+.|.+.++...+.+|+..-.++..|.++...|+.++|++.|++++... ....+.-...++.+|.++.-+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--------~~~~Ql~~l~~~El~w~~~~~ 318 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQ--------SEWKQLHHLCYFELAWCHMFQ 318 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--------hhHHhHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999999999999999999999998641 112222234778999999999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCH-------HHHHHHHHHHHHcC
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN-------AEAEKYLRLAAAHN 521 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~-------~eA~~~l~~al~~~ 521 (550)
++|++|.+++.+..+.. .- ..+...|..|.|+...|+. ++|.++++++-.+.
T Consensus 319 ~~w~~A~~~f~~L~~~s-~W------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLKES-KW------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred chHHHHHHHHHHHHhcc-cc------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999988864 21 2335677888999999999 88888888876543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.5e-05 Score=52.14 Aligned_cols=43 Identities=28% Similarity=0.409 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQ 411 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~ 411 (550)
|+.+..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4566788999999999999999999999999999999988875
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00027 Score=63.79 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLL----------EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~----------~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~ 454 (550)
++.|.+.++.....+|.+++.+++-|.++....++ ++|+.=|++|+.+ +|+.. .++++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-----~P~~h-------dAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-----NPNKH-------DALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-H-------HHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-----CCchH-------HHHHH
Confidence 45688889999999999999999988888776444 4677777888888 77776 27778
Q ss_pred HHHHHHHhcC-----------HHHHHHHHHHHhcCCCCCCc
Q 008887 455 SGVACIRQEK-----------WEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 455 lg~~~~~~g~-----------~~eA~~~~~~al~~~~p~~~ 484 (550)
+|.+|..++. |++|.++|+++.+.+ |++.
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~-P~ne 114 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED-PNNE 114 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--TT-H
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC-CCcH
Confidence 8888876543 788888999999887 8765
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0044 Score=57.41 Aligned_cols=140 Identities=26% Similarity=0.327 Sum_probs=107.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhhhcCCCC-ChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQ-TQLQKGLLEEAVEYLECAISKLFLAGHPT-EPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~-~~~~~g~~~eA~~~~~~al~l~~~~~~p~-~~~~~ 445 (550)
........+..+...++++++++.+++++..++.+.......+. ++...|++++|...+++++.. ++. ....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~- 167 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-----DPELNELA- 167 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCccchH-
Confidence 34455578888888888899999999998887777666666666 888999999999999998665 442 1111
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC-CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~-~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
......+..+...+++++|+..+.+++... +. .. ..+..++.++...+++++|...+..++...|..
T Consensus 168 ----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 168 ----EALLALGALLEALGRYEEALELLEKALKLN-PDDDA-------EALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred ----HHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccch-------HHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 134445666778889999999999988886 55 34 778888999999999999999999999888873
Q ss_pred H
Q 008887 525 N 525 (550)
Q Consensus 525 ~ 525 (550)
.
T Consensus 236 ~ 236 (291)
T COG0457 236 A 236 (291)
T ss_pred H
Confidence 3
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00023 Score=49.30 Aligned_cols=42 Identities=33% Similarity=0.405 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.++..+|.+|.+.|++++|++.|+++++.+|++.+++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 678999999999999999999999999999999999988764
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00016 Score=67.76 Aligned_cols=95 Identities=20% Similarity=0.177 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+...|..++..++|..|+.+|.+++.+ +|+.+ . .+.+.+.|+++..+++.+.+.+++++++. |+..
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~-----nP~~~-~------Y~tnralchlk~~~~~~v~~dcrralql~-~N~v- 78 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI-----NPTVA-S------YYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLV- 78 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc-----CCCcc-h------hhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHH-
Confidence 344577788889999999999999999 88887 2 66789999999999999999999999998 8777
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+++.+|.+..+...+++|+..+.++..+
T Consensus 79 ------k~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 79 ------KAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred ------HHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=8e-05 Score=76.55 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.+-+.|..++..++++.|+..|.+|++++|+++..+.+.+.++.+.+++..|+..+.+|++. +|... .
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-----dP~~~-------K 73 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-----DPTYI-------K 73 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc-----Cchhh-------h
Confidence 34477888899999999999999999999999999999999999999999999999999999 66655 4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 501 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~ 501 (550)
+|+..|.++...+++.+|...|++..... |+++ .+...+.+|-
T Consensus 74 ~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~-Pnd~-------~~~r~~~Ec~ 116 (476)
T KOG0376|consen 74 AYVRRGTAVMALGEFKKALLDLEKVKKLA-PNDP-------DATRKIDECN 116 (476)
T ss_pred eeeeccHHHHhHHHHHHHHHHHHHhhhcC-cCcH-------HHHHHHHHHH
Confidence 88889999999999999999999999998 9988 6666666664
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0056 Score=58.65 Aligned_cols=148 Identities=15% Similarity=0.149 Sum_probs=113.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh---HHHHHHHHHHHHcC-----C---HHHHHHHHHHHHHHhhh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKG-----L---LEEAVEYLECAISKLFL 435 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~---~a~~~lg~~~~~~g-----~---~~eA~~~~~~al~l~~~ 435 (550)
..+++.+.++..++..+++++|+...++.++.+|.++ -+++..|.++...= | ..+|+..+++.++.
T Consensus 69 ~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--- 145 (254)
T COG4105 69 YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--- 145 (254)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---
Confidence 4677888999999999999999999999999998775 45677888776442 2 23677788888888
Q ss_pred cCCCCChhhHHHHHH--------H--HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 436 AGHPTEPEAIDLLIV--------A--SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~--------a--~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
.|+.+...+.... + -...|..|.+.|.+..|+.-++++++.. ++.. ..-+++..+..+|..+|
T Consensus 146 --yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-~~t~----~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 146 --YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY-PDTS----AVREALARLEEAYYALG 218 (254)
T ss_pred --CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-cccc----chHHHHHHHHHHHHHhC
Confidence 7876643333221 1 2336788999999999999999999986 5554 44479999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcH
Q 008887 506 RNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 506 ~~~eA~~~l~~al~~~p~~~ 525 (550)
-.++|...- +++..|..+.
T Consensus 219 l~~~a~~~~-~vl~~N~p~s 237 (254)
T COG4105 219 LTDEAKKTA-KVLGANYPDS 237 (254)
T ss_pred ChHHHHHHH-HHHHhcCCCC
Confidence 999998874 5666664433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0015 Score=64.17 Aligned_cols=123 Identities=12% Similarity=0.091 Sum_probs=69.1
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
......|++.+|....++.|+.+|.+.-++.---.+++..|+.+.-...+++.+... +++-|... .....++
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~s----Yv~Gmya 182 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYS----YVHGMYA 182 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHH----HHHHHHH
Confidence 344556666666666666666666666666655566666666666666666665443 33333221 1222345
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
-++.+.|-|++|.+.-+++++++ +.|. -+...++.++...|++.|+.+...
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN-~~D~-------Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQIN-RFDC-------WASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCC-Ccch-------HHHHHHHHHHHhcchhhhHHHHHH
Confidence 55666666666666666666665 5444 444555555555555555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00082 Score=69.58 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=102.4
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC------h-----
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE------P----- 442 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~------~----- 442 (550)
++.....+..+.+.-+++.++||+++|+++.++..|+.-. ..-..+|+++|+++++..+..-.... .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 5566678888999999999999999999999999998632 24467777788777765421111110 0
Q ss_pred --hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 443 --EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 443 --~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+...+..+...+|.|..+.|+.+||++.++..++.. |.. +...++.+|..++..+++|+++...+.+.-.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~-----~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNL-----DNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-Ccc-----chhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0111122356779999999999999999999999876 532 1336899999999999999999999887543
|
The molecular function of this protein is uncertain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0059 Score=61.57 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
...+.|..-+..|+|.+|+.+..++-+-.+.-.-++..-+.+.-+.||++.|-.++.++.+. .+++. - .
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-----~~~~~-l----~- 154 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-----AGDDT-L----A- 154 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-----CCCch-H----H-
Confidence 33477888899999999999999977666666667777788899999999999999999888 22222 1 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.....+..+..+|+++.|..-..++++.. |..+ ++.....++|.+.|++.+....+.+.-+..--..+
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~-------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMT-PRHP-------EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCCh-------HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 45568899999999999999999999998 9888 99999999999999999999998887776544333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00026 Score=45.92 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 689999999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0023 Score=74.23 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=101.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.+-..|.+.|+.++|.+.|++. +.+..+|+.+...|.+.|+.++|++.|++..+.. ..|+.. .+.
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g---~~Pd~~--------T~~ 593 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG---VNPDEV--------TFI 593 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCcc--------cHH
Confidence 3446788899999999999886 5678899999999999999999999999987651 133332 445
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.+-.++.+.|+.++|.++|++..+.. .-.+ ....|..+..+|.+.|+.++|.+.+++. .+.|+..
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~-gi~P-----~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~ 658 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKY-SITP-----NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPA 658 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHh-CCCC-----chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHH
Confidence 56677889999999999999987432 2222 1267889999999999999999999875 3556643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0036 Score=62.42 Aligned_cols=143 Identities=13% Similarity=0.015 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ-KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~-~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
.+.....+.+..+.|...|++|++..+.+...|...|.+-++ .++.+.|.+.|+.+++. .|.+. . .|
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-----f~~~~-~------~~ 73 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-----FPSDP-D------FW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-----HTT-H-H------HH
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----CCCCH-H------HH
Confidence 445555666668899999999997777788999999999777 56666699999999999 66665 2 44
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
......+...|+.+.|..+|++++..- +.+. +.-..|......-.+.|+.+......+++.+..|+.........
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l-~~~~----~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSL-PKEK----QSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTS-SCHH----HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-Cchh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 556677889999999999999999875 4322 12257888888888999999999999999999988666555444
Q ss_pred h
Q 008887 533 N 533 (550)
Q Consensus 533 ~ 533 (550)
+
T Consensus 149 r 149 (280)
T PF05843_consen 149 R 149 (280)
T ss_dssp C
T ss_pred H
Confidence 3
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00047 Score=44.51 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
++++.+|.+|...|++++|+++++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 689999999999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0008 Score=62.28 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+..++..|..|-..|-+.-|...|.+++.+ +|.-+ .+.+.+|..+...|+++.|.+.|+..++++ |.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai-----~P~m~-------~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~ 131 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAI-----RPDMP-------EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PT 131 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhc-----CCCcH-------HHHHHHHHHHHhcccchHHHHHhhhHhccC-Cc
Confidence 456778899999999999999999999999 88777 377889999999999999999999999998 87
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.. .++.+.|..+.--|++.-|.+.+.+-.+-+|+++-
T Consensus 132 y~-------Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 132 YN-------YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ch-------HHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 77 88999999988899999999999998888888764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0027 Score=56.52 Aligned_cols=113 Identities=24% Similarity=0.180 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEA-VEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA-~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
..|......|+.+.+++.+++++....++.-.-..- ..|-.. ...+++.. ..+.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~~------------------~~~~ 65 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLRELY------------------LDAL 65 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHHH------------------HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHHH------------------HHHH
Confidence 445555667777777888888877664432110000 122222 12221111 1144
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
..++..+...|++++|+..+++++..+ |-+. .++..+-.+|...|++.+|.+.|++..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E-------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDE-------EAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-H-------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCH-------HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 568888999999999999999999998 8877 8999999999999999999999998644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0023 Score=70.32 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=108.3
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~ 457 (550)
.....+++.+|++...+.++.+|+..-+....|.++.+.|+.++|..+++..-.. .+++. .....+-.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-----~~~D~-------~tLq~l~~ 85 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL-----KGTDD-------LTLQFLQN 85 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-----CCCch-------HHHHHHHH
Confidence 4577889999999999999999999999999999999999999999877655444 33322 14557889
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHh
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-LLEQLEN 533 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~-~~~~l~~ 533 (550)
||.++|++++|..+|++++..+ |. . +..+.+-++|.+.++|.+-.+.--+..+..|+.+- .|..++-
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~~-P~-e-------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQKY-PS-E-------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhhC-Cc-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence 9999999999999999999998 86 4 78888889999999998877665555556676665 3444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0083 Score=68.84 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=117.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.+...|...+++++|.++|++.++..-+....|..+|..++.+.+-++|...+.+|++- -|... +.+.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-----lPk~e-Hv~~Is---- 1604 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-----LPKQE-HVEFIS---- 1604 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-----cchhh-hHHHHH----
Confidence 67788899999999999999999988888999999999999999999999999999998 56633 555555
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..|..-++.|+.+.+...|+..+..+ |... +.|..+.+.-.+.|+.+.++..|++++.+.
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ay-PKRt-------DlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAY-PKRT-------DLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhC-ccch-------hHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 48899999999999999999999987 8777 999999999999999999999999999877
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.006 Score=56.48 Aligned_cols=126 Identities=30% Similarity=0.408 Sum_probs=108.4
Q ss_pred HHHHcCCCCChHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC-hhhHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEP---DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE-PEAIDLLIVASQ 453 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~-~~~~~~l~~a~~ 453 (550)
.+...|++++|...+++++..+| .........+..+...+++++|+..+.+++.. .+.. . ..+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-------~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDA-------EALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----Ccccch-------HHHH
Confidence 78999999999999999988776 45677778888889999999999999999999 4442 2 2566
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.++.++...+++++|+..+.+++... +... ..+..++..+...|+.+++...+.+++..+|.
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELD-PDNA-------EALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhC-cccH-------HHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 79999999999999999999999997 6533 67778888888888899999999999999987
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00046 Score=71.12 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
.-..+.-.+..++|+.|+..|.+|+++ +|+.. . .+-+.+.++.+.+++..|+..+.++++.+ |...
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l-----dpnca-~------~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~- 72 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL-----DPNCA-I------YFANRALAHLKVESFGGALHDALKAIELD-PTYI- 72 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc-----CCcce-e------eechhhhhheeechhhhHHHHHHhhhhcC-chhh-
Confidence 345677788889999999999999999 77665 2 34467889999999999999999999998 8766
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.+|+..|.+....+++.+|...|+....+.|+...+.+.+.+
T Consensus 73 ------K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 73 ------KAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred ------heeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 899999999999999999999999999999999998876654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0035 Score=62.29 Aligned_cols=141 Identities=15% Similarity=0.067 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
.++.++..+..+|++.+|.++.+++.++. +-+......+|.+|...||.+.|..-|+.|.......++.... .
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq-v 286 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ-V 286 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH-H
Confidence 56689999999999999999999998843 3356777889999999999999999999999885433333222 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 445 IDLLIVASQWSGVACIRQEKWEE-----GIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~e-----A~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
++.-..+.|+....-..+ |++.-.++++. .+..+.+.-....+..++.+|...|..|+-.+.+.++-+
T Consensus 287 -----~al~g~Akc~~~~r~~~k~~~Crale~n~r~lev--A~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 287 -----EALDGAAKCLETLRLQNKICNCRALEFNTRLLEV--ASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred -----HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 255567777766655555 99999999988 455555666678899999999999988887777766433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0083 Score=57.50 Aligned_cols=132 Identities=17% Similarity=0.165 Sum_probs=99.9
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
-...+.+..+.+-|.+.+++..+.+.+ ..+..||..+.. .+++.+|.-.|++.-+. .+..+ .
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-----~~~T~-------~ 208 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-----TPPTP-------L 208 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-----cCCCh-------H
Confidence 345677888888899999998877655 445556555543 35677888888887664 33333 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCcHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR-LAAAHNPQYNELL 528 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~-~al~~~p~~~~~~ 528 (550)
.....+.|++.+|++++|...++.++..+ ++++ +.+.++-.+-...|+.+++.+-+- +....+|+++-..
T Consensus 209 llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp-------etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 209 LLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP-------ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH-------HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 66689999999999999999999999998 8888 999999999999999888776554 4445667766433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=42.70 Aligned_cols=30 Identities=40% Similarity=0.517 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+.+++.+|.++...|++++|+++|++++++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467888999999999999999999999988
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00082 Score=43.50 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+.+++.+|.+|...|++++|+++|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 467889999999999999999999999998
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0046 Score=59.97 Aligned_cols=129 Identities=15% Similarity=0.164 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
-.+...+..+|+..+..+.++.- ..+++....+.|.+.++.|++++|++-|+.|++. .--++ ...|
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqp-------llAY 182 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQP-------LLAY 182 (459)
T ss_pred HHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCc-------hhHH
Confidence 45566778889998888777641 1256788899999999999999999999999999 33333 1556
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc---------------------cchhHHHHHHHHHHhcCCHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA---------------------HYYDGLVVLASALCNVGRNAEAEK 512 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~---------------------~~~~~~~~La~~~~~~g~~~eA~~ 512 (550)
+++.|+++.|+++.|+++..+.++..-.+.++-.. ...++....+-++++.|+++.|.+
T Consensus 183 niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 183 NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence 89999999999999999998888764111111110 145677788889999999999988
Q ss_pred HHHH
Q 008887 513 YLRL 516 (550)
Q Consensus 513 ~l~~ 516 (550)
.+..
T Consensus 263 aLtD 266 (459)
T KOG4340|consen 263 ALTD 266 (459)
T ss_pred Hhhc
Confidence 7653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00036 Score=45.35 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008887 471 HLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 512 (550)
Q Consensus 471 ~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~ 512 (550)
+|+++++++ |+++ .+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~-P~n~-------~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELN-PNNA-------EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHC-CCCH-------HHHHHHHHHHHHCcCHHhhcC
Confidence 378999998 9998 999999999999999999973
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0084 Score=56.68 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
...+..|...+++++|...+.+|.+-+..+ +.++-..|........+.|+..+|++|..+..+.|.|+....
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm-- 112 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM-- 112 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH--
Confidence 366778888899999999999999744332 345667778888899999999999999999887777776522
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+.-..|. ..+.-+.++|++.|++++..- ..+..++. -.+.+-..+++|.+..+++||-..+.+-
T Consensus 113 ----aleKAak-~lenv~Pd~AlqlYqralavv-e~~dr~~m-a~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 113 ----ALEKAAK-ALENVKPDDALQLYQRALAVV-EEDDRDQM-AFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred ----HHHHHHH-HhhcCCHHHHHHHHHHHHHHH-hccchHHH-HHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 2333333 456789999999999998875 33322221 2355666777888888888888776653
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00059 Score=67.33 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
..|...+..|++++|+++|..+++++|.....+...+.++.+.++...|+..+..++++ +|+... -|-
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-----n~Dsa~-------~yk 186 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-----NPDSAK-------GYK 186 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-----Cccccc-------ccc
Confidence 46668899999999999999999999999999999999999999999999999999999 666551 344
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
..|.+...+|++++|..+++.+.+++ - +. .+-..+-.+.-..+..++-...+++..+
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kld-~-dE-------~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKLD-Y-DE-------ANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhcc-c-cH-------HHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 67888889999999999999999986 2 22 2333344444444444444444444443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0079 Score=56.82 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHh--------hCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALN--------KEPDN----------INALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~--------~~p~~----------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+.+.|..++..|+|.+|...|+.|+. ..|.. ...+.++.++++..|+|-+++++....+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 556899999999999999999999976 23443 346788999999999999999999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 433 ~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+|++. .+++..|.+....=+.++|.+.|.++++++ |.-
T Consensus 260 -----~~~nv-------KA~frRakAhaa~Wn~~eA~~D~~~vL~ld-psl 297 (329)
T KOG0545|consen 260 -----HPGNV-------KAYFRRAKAHAAVWNEAEAKADLQKVLELD-PSL 297 (329)
T ss_pred -----CCchH-------HHHHHHHHHHHhhcCHHHHHHHHHHHHhcC-hhh
Confidence 77665 388899999999999999999999999997 643
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0033 Score=64.71 Aligned_cols=157 Identities=14% Similarity=0.039 Sum_probs=114.7
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.....++...+...+....+.++....+.+.+.....+.++..|++.+|.+.+-.. .+....+.--.+ .-.. +.+|+
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~-q~~~-cif~N 287 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITP-QLSS-CIFNN 287 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccc-hhhh-heeec
Confidence 34445666677777777777777788899999999999999999999999876432 111111111121 1111 12788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcC----------CCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNL----------KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~----------~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
++|.++++.|.|.-+..+|.++++. ..+.+.-......+..|+.|..|...|+.-.|.++|.++...--.
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999961 012222222235689999999999999999999999999998888
Q ss_pred cHHHHHHHHh
Q 008887 524 YNELLEQLEN 533 (550)
Q Consensus 524 ~~~~~~~l~~ 533 (550)
++..|-++.+
T Consensus 368 nPrlWLRlAE 377 (696)
T KOG2471|consen 368 NPRLWLRLAE 377 (696)
T ss_pred CcHHHHHHHH
Confidence 8888877655
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.017 Score=48.38 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC---C-C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE---P-D--------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~---p-~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
..|...+..|.|++|...+++|++.. | . +.-++-.|+.++...|+|++++...++++...-.-+.-..
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 45567788899999999999999853 1 1 4667889999999999999999998888866322222223
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
. ....++.+.++.+.++...|+.++|+..|+.+-+.
T Consensus 94 d-eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 D-EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp T-HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred c-cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3 44555568889999999999999999999988764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0018 Score=41.84 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.+++.+|.+|.++|++++|.++|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 679999999999999999999999999999853
|
... |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.027 Score=55.65 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.-+.|..|+..++|..|+..|.+.|+..-. ++.+|.+.+-+....|+|..|+....+++.+ +|.+.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-----~P~h~----- 153 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-----KPTHL----- 153 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----Ccchh-----
Confidence 338899999999999999999999996533 3566789999999999999999999999999 88877
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.+++.-+.|++++.++++|..++++.++.+
T Consensus 154 --Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 154 --KAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --hhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 378888999999999999999999988875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.34 Score=49.14 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=15.4
Q ss_pred hhhhhHHHHHhhhhHHHHHHHH
Q 008887 297 YIPQGSLVYWVTNSSFSIVQQL 318 (550)
Q Consensus 297 ~~p~~l~lYw~~s~~~~~~q~~ 318 (550)
.+...+++||++.+++.--+..
T Consensus 51 ~vaav~llwwlv~~iw~sP~t~ 72 (531)
T COG3898 51 LVAAVLLLWWLVRSIWESPYTA 72 (531)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH
Confidence 4556778899988887655443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.061 Score=55.56 Aligned_cols=163 Identities=12% Similarity=0.010 Sum_probs=118.4
Q ss_pred CccCCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHH-------HHHHHH---HHcCCHHHHHHHHHHHHH
Q 008887 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALI-------LMGQTQ---LQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 362 ~~~~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~-------~lg~~~---~~~g~~~eA~~~~~~al~ 431 (550)
++....+-+..+..-...-..|+.++-.+.|++|+..-|-..+-.+ .+-.++ ....|.+.+.+.|+.+++
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333456677777777777789999999999999997765433222 222222 367899999999999999
Q ss_pred HhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHH
Q 008887 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511 (550)
Q Consensus 432 l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~ 511 (550)
+ -|...- .....|...|.-..++.+...|.+.+..|+-.. |.+. .....-.+-.+++++|...
T Consensus 395 l-----IPHkkF---tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c-PK~K--------lFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 395 L-----IPHKKF---TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC-PKDK--------LFKGYIELELQLREFDRCR 457 (677)
T ss_pred h-----cCcccc---hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC-Cchh--------HHHHHHHHHHHHhhHHHHH
Confidence 9 454331 112256667777888999999999999999888 7554 4444556667888999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHhhHHHHHhhh
Q 008887 512 KYLRLAAAHNPQYNELLEQLENNDEEFVSDL 542 (550)
Q Consensus 512 ~~l~~al~~~p~~~~~~~~l~~~~~~~~~~l 542 (550)
..|++-++..|.+...|....+ .++.+.|-
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaE-lE~~Lgdt 487 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAE-LETSLGDT 487 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHH-HHHHhhhH
Confidence 9999999999999998888777 55554443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.17 Score=45.54 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+.+..+....+.++.++|+..|...-+..-+. .-+.+..|.+..+.|+..+|+.+|.++-... -.|.-..+
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd---- 132 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRD---- 132 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhH----
Confidence 45677788889999999999999987765444 3466788999999999999999999886551 12222211
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.+...-+..+...|.|++-....+..-.- .++ ....+...||.+.++.|++.+|...|..... +.+.++..
T Consensus 133 -~ARlraa~lLvD~gsy~dV~srvepLa~d---~n~----mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprni 203 (221)
T COG4649 133 -LARLRAAYLLVDNGSYDDVSSRVEPLAGD---GNP----MRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNI 203 (221)
T ss_pred -HHHHHHHHHHhccccHHHHHHHhhhccCC---CCh----hHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHH
Confidence 25566788899999999988777653322 222 3447888999999999999999999998776 54444444
Q ss_pred HHHHh
Q 008887 529 EQLEN 533 (550)
Q Consensus 529 ~~l~~ 533 (550)
.+-.+
T Consensus 204 rqRAq 208 (221)
T COG4649 204 RQRAQ 208 (221)
T ss_pred HHHHH
Confidence 44333
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.002 Score=66.28 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=94.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHH-HhhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLA-LNKEPD--------NINALILMGQTQLQKGLLEEAVEYLECAISKL---FL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~a-L~~~p~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~---~~ 435 (550)
++..++-.+..++..|++.+|.+++... +...+. ....++++|.++++.|.|..+..+|.+|++-. ..
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 5566777888999999999999887654 333343 23456899999999999999999999999610 00
Q ss_pred cC---CCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh
Q 008887 436 AG---HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 436 ~~---~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~ 503 (550)
.+ .+........-.+..|+.|..|...|+...|.++|.++.... ..+| ..|..+|+|...
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nP-------rlWLRlAEcCim 381 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNP-------RLWLRLAECCIM 381 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCc-------HHHHHHHHHHHH
Confidence 01 111110111112377899999999999999999999999987 7777 999999999753
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.027 Score=47.22 Aligned_cols=108 Identities=21% Similarity=0.169 Sum_probs=71.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh--hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccc
Q 008887 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (550)
Q Consensus 410 g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~--~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~ 487 (550)
|.-.++.|-|++|...++++++..+- -|... ++..+-..++-.|+.++..+|+|++++..-++++... .+..+.+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srt--iP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF-NRRGEL~ 92 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRT--IPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF-NRRGELH 92 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTT--S-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHH--TT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc--CChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-hhccccc
Confidence 44556779999999999999988421 22211 1222222356778889999999999988877777543 2211111
Q ss_pred c----cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 488 A----HYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 488 ~----~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
. ..+.+.+..|.++...|+.++|...|+.+-++
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 1 23456778899999999999999999987654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.024 Score=58.38 Aligned_cols=131 Identities=12% Similarity=0.039 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
....|.--..++++..|.+.+++||..+..+...|...+..-++.+....|...+++|+.+ -|.-. ..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-----lPRVd-------ql 143 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-----LPRVD-------QL 143 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-----cchHH-------HH
Confidence 3456666677888999999999999999999999999999999999999999999999999 33332 25
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
|+..-..-...|+...|.+.|++-++.. |+. .+|...-..-.+..+.+.|...|++-+-.+|+
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w~-P~e--------qaW~sfI~fElRykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEWE-PDE--------QAWLSFIKFELRYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcCC-CcH--------HHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence 5566666677899999999999988886 643 24444444444444444444444444444444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0088 Score=43.07 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+.++.+|..+.++|+|++|.++.+.+++++|++.++....+.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 5688999999999999999999999999999999987766553
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.026 Score=53.12 Aligned_cols=149 Identities=17% Similarity=0.062 Sum_probs=96.5
Q ss_pred hHHHH-HHHHHHHHcCCCCChHHHHHHHHhhC-----CCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 369 PKELI-ALSVKFLSKGDKERPIPLLQLALNKE-----PDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 369 ~~~l~-~la~~~~~~g~~~~A~~~~~~aL~~~-----p~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+.+++ ..|..|...++.+.|-..|.++-+.+ .++. .++..-+.+ ++.++.++|+.++++++++...-|.-+.
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444 45556666677777777777775532 2233 444444444 4666999999999999999422111111
Q ss_pred hhhHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 442 PEAIDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
-...+..+|..|... .++++|+.+|+.+-+.. ..+... ..-...+...|....++++|.+|+..|+++.+.
T Consensus 112 ------aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y-k~ees~-ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 112 ------AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY-KGEESV-SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred ------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH-cchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111344577777655 89999999999998765 322211 112245666777778999999999999998876
Q ss_pred CCCcHH
Q 008887 521 NPQYNE 526 (550)
Q Consensus 521 ~p~~~~ 526 (550)
.-++.-
T Consensus 184 s~~n~L 189 (288)
T KOG1586|consen 184 SLDNNL 189 (288)
T ss_pred hccchH
Confidence 655544
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.063 Score=55.61 Aligned_cols=138 Identities=20% Similarity=0.122 Sum_probs=103.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhh---CCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNK---EPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~---~p~-------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
.++....-.|++.+|++....+.+- .|. .+..++.+|.....-+.++.|...|..|.++ .+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~---------t~ 398 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL---------TE 398 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh---------hh
Confidence 5677788899999999998888773 343 4567788999999999999999999999998 33
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..+.......++|..|.+.|+-+.--+.++..-..+ ......+.-.+.+++..|-..+..+++.||...+++.+++.
T Consensus 399 ~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~n-t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 399 SIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLN-TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCC-CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 444455577889999999888776666655532221 11111112245678888888899999999999999999976
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.043 Score=63.34 Aligned_cols=133 Identities=16% Similarity=0.057 Sum_probs=82.1
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH----------
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW---------- 454 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~---------- 454 (550)
-.+..+.|++.+.-+|+..-.|..+=....+.++.++|.+.+++|+..- |++..++...++.|+.|
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 3345556666666667766666666666666677777777776666552 44444333333333333
Q ss_pred --------------------HHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008887 455 --------------------SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYL 514 (550)
Q Consensus 455 --------------------lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l 514 (550)
|...|...+++++|.++++..++.. .+.. ..|..+|..+.++.+-++|...+
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~-------~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTR-------KVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchh-------hHHHHHHHHHhcccHHHHHHHHH
Confidence 4455556667777777777766664 3333 67777777777777777777777
Q ss_pred HHHHHcCCC--cHHHHH
Q 008887 515 RLAAAHNPQ--YNELLE 529 (550)
Q Consensus 515 ~~al~~~p~--~~~~~~ 529 (550)
.+|++--|. |.+...
T Consensus 1588 ~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred HHHHhhcchhhhHHHHH
Confidence 777776666 444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.062 Score=55.05 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHH---cCCCCChHHHHHHHHh-hCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhh
Q 008887 369 PKELIALSVKFLS---KGDKERPIPLLQLALN-KEPDNINALILMGQTQLQK---------GLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 369 ~~~l~~la~~~~~---~g~~~~A~~~~~~aL~-~~p~~~~a~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~ 435 (550)
+...+..|.++.+ .|+.++|++.+..++. ..+.+++.+...|.+|-.. ...++|++.|+++.+.
T Consensus 179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--- 255 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--- 255 (374)
T ss_pred hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC---
Confidence 3344577777877 8999999999999554 5677889999999888432 3467899999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh----c-CCCCCCccccccchhHHHHHHHHHHhcCCHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG----N-LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 510 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al----~-~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA 510 (550)
+|+.- .=.|++.++...|.-.+.....++.. . .....+... ......+..++.+..-.|++++|
T Consensus 256 --~~~~Y--------~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~-~~dYWd~ATl~Ea~vL~~d~~ka 324 (374)
T PF13281_consen 256 --EPDYY--------SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK-MQDYWDVATLLEASVLAGDYEKA 324 (374)
T ss_pred --Ccccc--------chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc-cccHHHHHHHHHHHHHcCCHHHH
Confidence 54332 22367777777776554443333322 0 000111111 12234566778888889999999
Q ss_pred HHHHHHHHHcCCCcHHHHHHH
Q 008887 511 EKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 511 ~~~l~~al~~~p~~~~~~~~l 531 (550)
.++++++++.+|..=+....+
T Consensus 325 ~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 325 IQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred HHHHHHHhhcCCcchhHHHHH
Confidence 999999999987654433333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.026 Score=53.96 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=87.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+|.-+..+|...++.||.+.|..+|++.-+.. ..+.....+.+.+|...+++.+|...|.++++. +|.+
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~-----D~~~ 285 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM-----DPRN 285 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc-----CCCc
Confidence 44445589999999999999999999665532 334567778899999999999999999999999 8888
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+ . +.++-|.|+...|+..+|++..+.+++.. |...
T Consensus 286 ~-~------a~NnKALcllYlg~l~DAiK~~e~~~~~~-P~~~ 320 (366)
T KOG2796|consen 286 A-V------ANNNKALCLLYLGKLKDALKQLEAMVQQD-PRHY 320 (366)
T ss_pred h-h------hhchHHHHHHHHHHHHHHHHHHHHHhccC-Cccc
Confidence 7 3 77789999999999999999999999987 7554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.035 Score=51.18 Aligned_cols=106 Identities=17% Similarity=-0.035 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
..++..+|..|.+.||.++|+++|.++.+. ..... .....+.++-.+.+..|++.....+..++-.. ++
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-----~~~~~----~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~--~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY-----CTSPG----HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL--IE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-----cCCHH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--Hh
Confidence 467889999999999999999999998766 22222 22235667888888999999999999998877 44
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
..+++.........-|..+...|+|.+|.+.|-.+..
T Consensus 105 ~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 105 KGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 4444555555666777778889999999998876654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0079 Score=38.68 Aligned_cols=29 Identities=38% Similarity=0.432 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++++.+|.+|...|++++|.++|++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999999998
|
... |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.085 Score=50.22 Aligned_cols=105 Identities=11% Similarity=0.010 Sum_probs=69.5
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHhcCCCCCCccc
Q 008887 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW-------EEGIAHLERIGNLKEPEEPKS 486 (550)
Q Consensus 414 ~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~-------~eA~~~~~~al~~~~p~~~~~ 486 (550)
.....+++|++.|.-|+--....+.+.. .....+..+|.+|...|+. .+|++.|+++++.. +.+..
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s-----~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e--~~~~~ 160 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPS-----KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE--DFPIE 160 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC--cCCCC
Confidence 3455677777777766655322211111 1223555688888888874 46667777777663 33333
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 487 ~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
........+.+|.++.+.|++++|.+.+.+++.......
T Consensus 161 ~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 161 GMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 344557899999999999999999999999998654443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0075 Score=38.36 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
++++.+|.++.+.|++++|.+.|+++++..|+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999874
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.011 Score=38.78 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++..+|.+|.+.|+|++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999998876
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.061 Score=43.56 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=52.5
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHH
Q 008887 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEE 467 (550)
Q Consensus 388 A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~e 467 (550)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-++++. ++.+.+.. +...+-.++...|.-+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~-----dr~~~~~~-----ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR-----DRDYEDDA-----ARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC------TTCCCCH-----HHHHHHHHHHHH-TT-H
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CccccccH-----HHHHHHHHHHHcCCCCh
Confidence 457788999999999999999999999999999999999888888 66553221 33334445555555444
Q ss_pred HHHHHHH
Q 008887 468 GIAHLER 474 (550)
Q Consensus 468 A~~~~~~ 474 (550)
-...+++
T Consensus 77 lv~~~RR 83 (90)
T PF14561_consen 77 LVSEYRR 83 (90)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.26 Score=44.16 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
..+++....-...++.+++..++...-.+.|+.++.-..-|.++...|+|.+|+..++.+.+. .|..+ .
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-----~~~~p-~----- 79 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-----APGFP-Y----- 79 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCCCh-H-----
Confidence 355677788888899999999998888899999999999999999999999999999997666 55555 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
+---++.|+..+|+.+-= .+-+++++.
T Consensus 80 -~kALlA~CL~~~~D~~Wr-~~A~evle~ 106 (160)
T PF09613_consen 80 -AKALLALCLYALGDPSWR-RYADEVLES 106 (160)
T ss_pred -HHHHHHHHHHHcCChHHH-HHHHHHHhc
Confidence 223467788777765432 223344444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.051 Score=54.20 Aligned_cols=101 Identities=13% Similarity=0.001 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHhcCCCCCC
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR-QEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~-~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+|..+.....+.+..++|...|++|.+. .+... + .|...|..-+. .++.+.|...|+++++.. +.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-----~~~~~-~------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-----KRCTY-H------VYVAYALMEYYCNKDPKRARKIFERGLKKF-PSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCS-T-H------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-----CCCCH-H------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCC
Confidence 5677778888888899999999999743 22222 2 45556777555 456666999999999998 888
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
. ..|..+...+...|+.++|+..|++++..-+...
T Consensus 70 ~-------~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 70 P-------DFWLEYLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp H-------HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred H-------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 7 8899999999999999999999999998776665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.14 Score=56.17 Aligned_cols=130 Identities=20% Similarity=0.107 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHHHc-----CCCCChHHHHHHHHh-----hCCCChHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSK-----GDKERPIPLLQLALN-----KEPDNINALILMGQTQLQKG-----LLEEAVEYLECAISK 432 (550)
Q Consensus 368 ~~~~l~~la~~~~~~-----g~~~~A~~~~~~aL~-----~~p~~~~a~~~lg~~~~~~g-----~~~eA~~~~~~al~l 432 (550)
+..+...+|..+... +|.+.|+.+|+.+.+ ..-.++.+.+.+|.+|.+.. +.+.|..+|.++.+.
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 334445666666554 478889999999977 11236778899999999853 778899999999888
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc----C
Q 008887 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQE---KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV----G 505 (550)
Q Consensus 433 ~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g---~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~----g 505 (550)
.++ .+.+.+|.++.... ++.+|.++|.+|.+... ..+.+.+|.||..- .
T Consensus 323 -------g~~-------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~----------~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 323 -------GNP-------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH----------ILAIYRLALCYELGLGVER 378 (552)
T ss_pred -------CCc-------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCcCC
Confidence 122 26667999887655 67899999999988752 28999999998743 4
Q ss_pred CHHHHHHHHHHHHHcC
Q 008887 506 RNAEAEKYLRLAAAHN 521 (550)
Q Consensus 506 ~~~eA~~~l~~al~~~ 521 (550)
+.++|..+++++.+.+
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 7899999999999987
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.025 Score=61.74 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHH----------HhhCCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLA----------LNKEPD----------NINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~a----------L~~~p~----------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++.|..+...+|.+.|+++|+++ |+.+|. +...|.+-|+.....|+.+.|+.+|..|-.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 35555555555666666666553 112222 334445555555556666666665555521
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008887 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 512 (550)
Q Consensus 433 ~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~ 512 (550)
|+.+-++.+-+|+.++|...-++ ..|. .+.|.+|+.|...|+..+|+.
T Consensus 941 -------------------~fs~VrI~C~qGk~~kAa~iA~e------sgd~-------AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 941 -------------------YFSMVRIKCIQGKTDKAARIAEE------SGDK-------AACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred -------------------hhhheeeEeeccCchHHHHHHHh------cccH-------HHHHHHHHHhhhhHHHHHHHH
Confidence 12234444455555555555444 2222 678899999999999999999
Q ss_pred HHHHHHHc
Q 008887 513 YLRLAAAH 520 (550)
Q Consensus 513 ~l~~al~~ 520 (550)
.|.++...
T Consensus 989 FfTrAqaf 996 (1416)
T KOG3617|consen 989 FFTRAQAF 996 (1416)
T ss_pred HHHHHHHH
Confidence 99887554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.18 Score=52.87 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
..+...+|.+..+.|+.+||++.+++.++. +|..... ..++++-.++...+.|+++...+.+.=+...|+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke-----~p~~~~l-----~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKE-----FPNLDNL-----NIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhh-----CCccchh-----hHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 345567999999999999999999999988 6643322 277899999999999999999999843221122
Q ss_pred CccccccchhHHHHHHHHHH-hcCC---------------HHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 483 EPKSKAHYYDGLVVLASALC-NVGR---------------NAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~-~~g~---------------~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.. ...+.-|-+.. ..|+ -..|.++..++.+.||..++++-....
T Consensus 329 SA-------ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~ 388 (539)
T PF04184_consen 329 SA-------TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS 388 (539)
T ss_pred hH-------HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence 22 33333333221 1222 134778999999999999987765443
|
The molecular function of this protein is uncertain. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.048 Score=50.11 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
..+|..+...|++++|+..++.++....|. .-+-..+|.+..++|++++|+..++..... .+...
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~----------~w~~~-- 160 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE----------SWAAI-- 160 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc----------cHHHH--
Confidence 388999999999999999999999654332 345568999999999999999887654322 12211
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.....|.++...|+-++|+..|+++++..
T Consensus 161 -~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 161 -VAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred -HHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 22357999999999999999999999985
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.11 Score=49.49 Aligned_cols=140 Identities=12% Similarity=0.050 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE-----PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~-----p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
..|........+.++..++++|...+ |+.+..-...+--..+..+.++|++.|++++.+... .+ ..+.-
T Consensus 76 qaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~----~d--r~~ma 149 (308)
T KOG1585|consen 76 QAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE----DD--RDQMA 149 (308)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc----cc--hHHHH
Confidence 45556666778888999999998754 444444455666667888999999999999988421 11 11111
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.+.+...++.+.+..++++|-..+.+-.... . ...+.......+...-.+|.-..+|..|...++..-++.
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~-~-~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAA-D-KCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH-H-HHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 1245568889999999999998887644331 0 000001111334444455566669999999999876654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.014 Score=38.29 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 493 GLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 493 ~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
++.+||.+|.+.|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.02 Score=38.55 Aligned_cols=39 Identities=28% Similarity=0.196 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
..++.++|.+|...|++++|++++++++++.+....+++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~H 40 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDH 40 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccc
Confidence 457889999999999999999999999998544434433
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0042 Score=61.47 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=79.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc
Q 008887 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (550)
Q Consensus 409 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~ 488 (550)
.+.-.+..|.+++|+++|..++++ +|... ..+-..+.++.++++...|+..|..+++++ ++..
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~l-----np~~a-------~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa---- 182 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIEL-----NPPLA-------ILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSA---- 182 (377)
T ss_pred HHHHHhcCcchhhhhccccccccc-----CCchh-------hhcccccceeeeccCCchhhhhhhhhhccC-cccc----
Confidence 344445668899999999999999 67655 255678999999999999999999999997 7776
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 489 HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 489 ~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..|-..+.+...+|++++|...++.+.+++
T Consensus 183 ---~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 183 ---KGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ---cccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 677788889999999999999999998876
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.035 Score=59.51 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..|..+...|+.++|++.|++++....+ ..-+++.+|.++..+++|++|.+++.+..+. +.-..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSk----- 339 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSK----- 339 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHH-----
Confidence 348999999999999999999999863322 3456789999999999999999999999887 22111
Q ss_pred HHHHHHHHHHHHHHhcCH-------HHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKW-------EEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~-------~eA~~~~~~al~~~ 479 (550)
....|..|.|+...|+. ++|.++++++-...
T Consensus 340 -a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 340 -AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred -HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 12567789999999999 99999999887664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.3 Score=49.97 Aligned_cols=147 Identities=14% Similarity=0.029 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhhcCCC----
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEP----DNINALILMGQTQLQKGLLEEAVEYLECAIS-KLFLAGHP---- 439 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p----~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~-l~~~~~~p---- 439 (550)
.+.....+......|+++.|...+.++.+.++ ..+...+..+......|+.++|+..+++.+. ......++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 34556899999999999999999999988552 2578888999999999999999999999888 21110000
Q ss_pred ---------------C--ChhhHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHhcCCCCCCccccccchhHHHH
Q 008887 440 ---------------T--EPEAIDLLIVASQWSGVACIRQ------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 496 (550)
Q Consensus 440 ---------------~--~~~~~~~l~~a~~~lg~~~~~~------g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~ 496 (550)
. ..........++..+|.-.... ++.+++++.|+++++.+ |+.. .+|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~-------k~~~~ 297 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD-PSWE-------KAWHS 297 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC-hhHH-------HHHHH
Confidence 0 1112333444667777777777 99999999999999997 7666 77777
Q ss_pred HHHHHHhcCCH-----------------HHHHHHHHHHHHcCCC
Q 008887 497 LASALCNVGRN-----------------AEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 497 La~~~~~~g~~-----------------~eA~~~l~~al~~~p~ 523 (550)
+|..+.+.=+. ..|+..|-+++...++
T Consensus 298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 77776543221 2366677777777666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.035 Score=49.24 Aligned_cols=63 Identities=30% Similarity=0.327 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
.+..++..+...|++++|+..+++++..+|.+-.++..+-.+|...|+..+|++.|+++.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 344788889999999999999999999999999999999999999999999999999987763
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.023 Score=36.00 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++++.+|.++.+.|++++|++.|+++++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36778888888888888888888888877
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.13 Score=57.15 Aligned_cols=95 Identities=25% Similarity=0.292 Sum_probs=78.6
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhH
Q 008887 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 493 (550)
Q Consensus 414 ~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~ 493 (550)
...+++.+|++...+.++. .|+.. . +...-|..+.++|+.++|..+++..-... ++|. ..
T Consensus 20 ld~~qfkkal~~~~kllkk-----~Pn~~-~------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~-------~t 79 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK-----HPNAL-Y------AKVLKALSLFRLGKGDEALKLLEALYGLK-GTDD-------LT 79 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH-----CCCcH-H------HHHHHHHHHHHhcCchhHHHHHhhhccCC-CCch-------HH
Confidence 3568899999999999999 77776 3 34446888999999999998887765554 6665 78
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 494 LVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 494 ~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
+..+-.||.++|++++|..+|+++...+|+ .+...
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~ 114 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLY 114 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence 889999999999999999999999999999 55433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.09 Score=54.34 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=101.4
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~ 457 (550)
..+..||.-.|-+-+..+|+.+|.++......+.+..+.|+|+++.+.+..+-... ...+. +...+-+
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~~~--------~~~~~~r 365 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII----GTTDS--------TLRCRLR 365 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh----cCCch--------HHHHHHH
Confidence 45778999999999999999999999999999999999999999999876654441 11111 3345667
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.....|++++|...-+-.+..+ -+++ +....-|....++|-+|+|..++++++.++|...
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~e-ie~~-------ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNE-IEDE-------EVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccc-cCCh-------hheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 7888999999999988877664 6666 6666666677888999999999999999986543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.57 Score=47.58 Aligned_cols=133 Identities=16% Similarity=0.102 Sum_probs=93.4
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~ 457 (550)
.....|+.+.|..+-+++-.+.|.-+.++...-...+..|||++|++..+...+.. ...+...+....... ..-+.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLL--tAkA~ 238 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLL--TAKAM 238 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHH--HHHHH
Confidence 45667888888888888888889999888888888999999999999987766552 112222211111110 01111
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
. .-.-+...|...-.+++++. |+.. -+-..-+.++++.|+..++-..++.+.+..|.
T Consensus 239 s-~ldadp~~Ar~~A~~a~KL~-pdlv-------Paav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 239 S-LLDADPASARDDALEANKLA-PDLV-------PAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred H-HhcCChHHHHHHHHHHhhcC-Cccc-------hHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 1 22345677888888888887 7666 67777788888888888888888888877655
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.036 Score=54.10 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.+.|......|+.++|..+|+.|++++|++++++..+|......++.-+|-++|-+|+.+ +|.+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti-----sP~ns 184 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI-----SPGNS 184 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee-----CCCch
Confidence 377788899999999999999999999999999999999999999999999999999999 88776
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.037 Score=54.07 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=61.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 456 g~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
+.-..+.|+.++|...|+.++.+. |+++ +++..+|.......+.-+|-++|-+++.++|.+.+++-+-
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlala-P~~p-------~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALA-PTNP-------QILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcC-CCCH-------HHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 334457899999999999999998 9999 9999999999999999999999999999999999977653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.19 Score=53.93 Aligned_cols=145 Identities=16% Similarity=0.064 Sum_probs=94.4
Q ss_pred ChHHHH-HHHHHHHHcCCCCChHHHHHHHHhhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh----cCC
Q 008887 368 TPKELI-ALSVKFLSKGDKERPIPLLQLALNKEP----DNINALILMGQTQLQKGLLEEAVEYLECAISKLFL----AGH 438 (550)
Q Consensus 368 ~~~~l~-~la~~~~~~g~~~~A~~~~~~aL~~~p----~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~----~~~ 438 (550)
++..+. ..|..|...|+.+.|...|+++.+.+= +-...|..-|..-+...+++.|+...++|...=.. .-+
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 344444 899999999999999999999999652 23577888899999999999999999998755100 000
Q ss_pred CCChhh---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 439 PTEPEA---IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 439 p~~~~~---~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
...+-. ...+ ..|..++......|-++.....|++.+++. --.| ....+.|..+....-+++|.+.|+
T Consensus 465 ~~~pvQ~rlhrSl-kiWs~y~DleEs~gtfestk~vYdriidLr-iaTP-------qii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 465 NSEPVQARLHRSL-KIWSMYADLEESLGTFESTKAVYDRIIDLR-IATP-------QIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred CCCcHHHHHHHhH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCH-------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 111100 1111 145555555666677777777777777664 3333 555566666666666666666666
Q ss_pred HHHHcC
Q 008887 516 LAAAHN 521 (550)
Q Consensus 516 ~al~~~ 521 (550)
+.+.+-
T Consensus 536 rgI~LF 541 (835)
T KOG2047|consen 536 RGISLF 541 (835)
T ss_pred cCCccC
Confidence 655543
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.17 Score=52.53 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=102.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCC-CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh--
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEP-DN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP-- 442 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p-~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~-- 442 (550)
.+.-.+-+|.....-+.+++|+..|..|.++-. .+ +.+..++|.+|...|+-+.-.+.++.. +|.+.
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i--------~p~nt~s 437 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI--------GPLNTNS 437 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc--------CCCCCCc
Confidence 344556889999999999999999999998643 33 344568999999988876555444332 44321
Q ss_pred hhHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 443 EAID-LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 443 ~~~~-~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+ .-...++..|...+.++++.||...+++.++.. +..+.-.-.+..+..|+.+....|+..|+.+..+-++.+.
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 1111 111256677888899999999999999999884 2221222244567789999999999999998887776654
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.1 Score=43.55 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=72.3
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHhhhcCCCC
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGL-----------LEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~p~~~---~a~~~lg~~~~~~g~-----------~~eA~~~~~~al~l~~~~~~p~ 440 (550)
.|..++.+|++-+|++..+..+..+.++. ..+...|.++.+... .-.++++|.++..+ .|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-----sp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-----SPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----Chh
Confidence 57789999999999999999999887766 566778888865543 22588888888888 444
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.. ...+.+|.-+-....|+++..-.++++....|
T Consensus 77 ~A-------~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 77 SA-------HSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred HH-------HHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 42 24556777766677788999999988877533
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.045 Score=57.80 Aligned_cols=106 Identities=16% Similarity=0.063 Sum_probs=89.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc
Q 008887 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (550)
Q Consensus 409 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~ 488 (550)
-|..+...|+...|.+++..|+.. .|... .. ...+++.++.+.|-..+|-..+.+++.+. ...+
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~-----~p~~~-~v-----~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sep---- 676 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNL-----APLQQ-DV-----PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEP---- 676 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhcc-----Chhhh-cc-----cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCc----
Confidence 355556789999999999999888 44443 21 44579999999999999999999999997 6666
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 489 HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 489 ~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
-.++.+|.+|..+.+.++|++.++.++..+|++.+..+.|..
T Consensus 677 ---l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 677 ---LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred ---hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 889999999999999999999999999999999987776655
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.23 Score=42.85 Aligned_cols=77 Identities=23% Similarity=0.260 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 451 ASQWSGVACIRQ---EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 451 a~~~lg~~~~~~---g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
..++++.++... .+..+.+..++..++...|+.. -+..+.||..+.+.|+|++++++.+..++..|++.++
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r------Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR------RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc------hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 667788888765 4556889999998873213221 2678899999999999999999999999999999987
Q ss_pred HHHHHh
Q 008887 528 LEQLEN 533 (550)
Q Consensus 528 ~~~l~~ 533 (550)
...-+.
T Consensus 108 ~~Lk~~ 113 (149)
T KOG3364|consen 108 LELKET 113 (149)
T ss_pred HHHHHH
Confidence 664333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.73 Score=49.68 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=109.6
Q ss_pred HHHHcCCCCChHHHHHHHHh-hCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 378 KFLSKGDKERPIPLLQLALN-KEPD-----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~-~~p~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
.-+..|+..+-+..|.+|++ .+|. -...|..+|..|...|+.+.|...|+++.... .+ ..+.+...
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-------y~-~v~dLa~v 427 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-------YK-TVEDLAEV 427 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-------cc-chHHHHHH
Confidence 45667888888999999987 4553 24678899999999999999999999999882 22 33445557
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc------ccc------cchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK------SKA------HYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~------~~~------~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
|...|..-.+..+++.|+++.++|... |..+. .++ +....|..++......|-++.-...|++++.
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~v--P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHV--PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcC--CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 778888888999999999999999887 55532 000 2567888999999999999999999999998
Q ss_pred cCCCcHH
Q 008887 520 HNPQYNE 526 (550)
Q Consensus 520 ~~p~~~~ 526 (550)
+.-..+.
T Consensus 506 LriaTPq 512 (835)
T KOG2047|consen 506 LRIATPQ 512 (835)
T ss_pred HhcCCHH
Confidence 8744444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.2 Score=46.29 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=85.3
Q ss_pred HHHHHHHHHcCC-CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHh---hhcCCC-CChhhH
Q 008887 373 IALSVKFLSKGD-KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE--YLECAISKL---FLAGHP-TEPEAI 445 (550)
Q Consensus 373 ~~la~~~~~~g~-~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~--~~~~al~l~---~~~~~p-~~~~~~ 445 (550)
..-|..+...|+ -++|+++++.+++..+.+..+-+..- .+-...|.+|+. .+.+.+.+. ...|-+ -...+.
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 477888888888 67799999999999998876544321 122233444332 122222221 111111 111111
Q ss_pred HHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 446 DLLIVASQWSG--VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 446 ~~l~~a~~~lg--~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
+..+.++ ..++.+|+|.++.-+.....+.. | .+ .++..+|.|+....+|+||..++..
T Consensus 461 ----eian~LaDAEyLysqgey~kc~~ys~WL~~ia-P-S~-------~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 461 ----EIANFLADAEYLYSQGEYHKCYLYSSWLTKIA-P-SP-------QAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred ----HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-C-cH-------HHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 1222343 44778999999999999999997 7 66 8999999999999999999999764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.62 Score=46.40 Aligned_cols=109 Identities=18% Similarity=0.022 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+...+.+....|++.+|....++.++. .|++- .++..--.++...|+.+.-...+++.+..-+++.|
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d-----~PtDl-------la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp- 172 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDD-----YPTDL-------LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP- 172 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHh-----Cchhh-------hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc-
Confidence 344566677789999999999999998 67665 24445556778889999999999999877435444
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
.+....-.++-++.+.|-|++|++.-++++++|+.+.=+...
T Consensus 173 ---~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha 214 (491)
T KOG2610|consen 173 ---CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHA 214 (491)
T ss_pred ---HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHH
Confidence 556777788899999999999999999999999988654443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.23 Score=48.95 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
...++-.+|.+.+++++|+.+.+..+... |+++ .-+.-.|.+|.++|.+..|...++..++..|+++.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp-------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDP-------YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 55678999999999999999999999998 9999 77888999999999999999999999999999887543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.04 Score=33.69 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.++..+|.++...|++++|...++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999988763
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.46 Score=49.05 Aligned_cols=145 Identities=20% Similarity=0.157 Sum_probs=108.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhh--------------C------------CCCh---HHHHHHHHHHHHcCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK--------------E------------PDNI---NALILMGQTQLQKGL 418 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~--------------~------------p~~~---~a~~~lg~~~~~~g~ 418 (550)
..+.+..++..+..+|+.+.|.+++++||-. + ++|. .+.+.....+.++|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 5567889999999999999999999999761 1 2232 344667788899999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCC-ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHH
Q 008887 419 LEEAVEYLECAISKLFLAGHPT-EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL 497 (550)
Q Consensus 419 ~~eA~~~~~~al~l~~~~~~p~-~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~L 497 (550)
+.-|.++.+-.+.+ +|. ||.. +.+.+-....+.++|+-=++.++........+.. .......+..
T Consensus 119 ~rTAlE~~KlLlsL-----dp~~DP~g------~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~---~~lPn~a~S~ 184 (360)
T PF04910_consen 119 WRTALEWCKLLLSL-----DPDEDPLG------VLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWL---SLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHHHhc-----CCCCCcch------hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhh---hhCccHHHHH
Confidence 99999999999999 898 7633 5555667777889999888888876552101100 0011566777
Q ss_pred HHHHHhcCCH---------------HHHHHHHHHHHHcCCCcHH
Q 008887 498 ASALCNVGRN---------------AEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 498 a~~~~~~g~~---------------~eA~~~l~~al~~~p~~~~ 526 (550)
+.++...++. ++|.+.+.+++...|....
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 8888888888 8999999999988776544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.28 Score=46.69 Aligned_cols=91 Identities=20% Similarity=0.120 Sum_probs=61.1
Q ss_pred CCCCChHHHHHHHHhh----CCC---ChHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 383 GDKERPIPLLQLALNK----EPD---NINALILMGQTQLQKGLLEE-------AVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~----~p~---~~~a~~~lg~~~~~~g~~~e-------A~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
..+++|++.|..|+-. ..+ -+..+..+|++|...|+.++ |++.|+++.+.. ..|..+... .
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e---~~~~~~~~~--~ 165 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE---DFPIEGMDE--A 165 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC---cCCCCCchH--H
Confidence 3555677777777652 222 24567789999999999664 555555555551 122222111 1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
...+-+|....+.|++++|..+|.+++...
T Consensus 166 -~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 -TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 155679999999999999999999999874
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.19 Score=41.06 Aligned_cols=65 Identities=20% Similarity=0.101 Sum_probs=48.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 412 TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 412 ~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
...+.|||.+|++.+.+..+......+... ...+..+..++|..+...|++++|++.+++++++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~---~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS---NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345789999999999999888432222221 11223367789999999999999999999999884
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.1 Score=44.82 Aligned_cols=138 Identities=18% Similarity=0.144 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHcC----CCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 369 PKELIALSVKFLSKG----DKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 369 ~~~l~~la~~~~~~g----~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
+.....++..+.... +..+|..+|+.+ .+..++.+.+.+|..|.. ..|..+|..+|+++.+.. ++.
T Consensus 73 ~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g----~~~ 146 (292)
T COG0790 73 AAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG----NVE 146 (292)
T ss_pred hHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC----Chh
Confidence 345567777666554 455688888843 456788899999999987 559999999999998882 111
Q ss_pred ChhhHHHHHHHHHHHHHHHHHh-----c--CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHH
Q 008887 441 EPEAIDLLIVASQWSGVACIRQ-----E--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAE 509 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~-----g--~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~e 509 (550)
. . .+.+.+|.++..- - +..+|...|+++.+...+ .+...+|.+|.. ..+.++
T Consensus 147 a--~-----~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~----------~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 147 A--A-----LAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNP----------DAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred H--H-----HHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCH----------HHHHHHHHHHHcCCCCCcCHHH
Confidence 1 0 1355677776653 1 334799999998877522 789999988864 348899
Q ss_pred HHHHHHHHHHcCCCcHHHHHHH
Q 008887 510 AEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 510 A~~~l~~al~~~p~~~~~~~~l 531 (550)
|...|.++.+... ......+
T Consensus 210 A~~wy~~Aa~~g~--~~a~~~~ 229 (292)
T COG0790 210 AFRWYKKAAEQGD--GAACYNL 229 (292)
T ss_pred HHHHHHHHHHCCC--HHHHHHH
Confidence 9999999998766 4444333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.85 Score=40.25 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+.+........++.+++..++...--+.|+.++.-..-|.++...|+|++|+..+++..+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 34466666677889999888888888889999999999999999999999999999888666
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.34 Score=44.71 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD---NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+.++|..|.+.||+++|++.|.++.+..-. -.+.+..+-.+....++|.....+..++-.... ...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~---~~~d~~~--- 111 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE---KGGDWER--- 111 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh---ccchHHH---
Confidence 4558999999999999999999998875432 356778899999999999999999999988842 1112211
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.......-|..+..+++|.+|.+.|-.+....
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 11133356778888999999999998765543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.43 Score=41.22 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 402 NINALILMGQTQLQKGLL---EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~---~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
..+..+++++++.+..+. .+.+..+++.++.. +|... . +..|.++..+++.|+|++++.+++..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~----~~~~r-R-----e~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA----HPERR-R-----ECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc----Ccccc-h-----hhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456788888888876654 46788888887631 44444 2 26778999999999999999999999999
Q ss_pred CCCCCc
Q 008887 479 KEPEEP 484 (550)
Q Consensus 479 ~~p~~~ 484 (550)
+ |++.
T Consensus 101 e-~~n~ 105 (149)
T KOG3364|consen 101 E-PNNR 105 (149)
T ss_pred C-CCcH
Confidence 7 7776
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.67 Score=41.54 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
..+.....+-...++.+++...++..-.+ .|..++ .-..-|..++..|++++|+..++.+.+.. +..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvL-----RP~~~e-------~~~~~~~l~i~r~~w~dA~rlLr~l~~~~-~~~ 77 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVL-----RPEFPE-------LDLFDGWLHIVRGDWDDALRLLRELEERA-PGF 77 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHh-----CCCchH-------HHHHHHHHHHHhCCHHHHHHHHHHHhccC-CCC
Confidence 45667777788889999999999776666 787772 33457899999999999999999987775 766
Q ss_pred ccccccchhHHHHHHHHHHhcCCH
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRN 507 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~ 507 (550)
+ .+--.++.|+...|+.
T Consensus 78 p-------~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 78 P-------YAKALLALCLYALGDP 94 (160)
T ss_pred h-------HHHHHHHHHHHHcCCh
Confidence 6 7788899999988875
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.44 E-value=1 Score=46.60 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=82.9
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCC------------------CChhhHHHHHHHH
Q 008887 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP------------------TEPEAIDLLIVAS 452 (550)
Q Consensus 391 ~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p------------------~~~~~~~~l~~a~ 452 (550)
.+-..|+.+|-+.+++..++.++.++|+.+.|.+.+++|+-....+-.| ..+ .+..+..+.
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~-eNR~fflal 106 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRP-ENRQFFLAL 106 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccc-cchHHHHHH
Confidence 3445568899999999999999999999999999999987543111111 122 222233377
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCC-CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~-~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+.....+.+.|.+.-|.++++-.+.++ |. |+ ..+.+.+-....+.++++--++.++..
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLd-p~~DP------~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLD-PDEDP------LGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcC-CCCCc------chhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 778888999999999999999999998 76 76 123333334445566665555555543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.4 Score=43.82 Aligned_cols=132 Identities=13% Similarity=0.060 Sum_probs=98.0
Q ss_pred ChHHHHHHHHHHHH----cCCCCChHHHHHHHHhhCCCC-hHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHhhh
Q 008887 368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDN-INALILMGQTQLQKG-------LLEEAVEYLECAISKLFL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~----~g~~~~A~~~~~~aL~~~p~~-~~a~~~lg~~~~~~g-------~~~eA~~~~~~al~l~~~ 435 (550)
.+...+++|..+.. ..|+.+|..+|+++.+..-.. ..+.+.+|..|..-+ +...|...|+++....
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 56677789988887 448889999999998875433 345888888887642 2337888888887771
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC------
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG------ 505 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g------ 505 (550)
++ .+.+.+|.+|.. ..++++|..+|.++.+.. . . .+.+.++ ++...|
T Consensus 186 -----~~-------~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g-~--~-------~a~~~~~-~~~~~g~g~~~~ 242 (292)
T COG0790 186 -----NP-------DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG-D--G-------AACYNLG-LMYLNGEGVKKA 242 (292)
T ss_pred -----CH-------HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-C--H-------HHHHHHH-HHHhcCCCchhh
Confidence 22 266778888754 458899999999999986 2 3 7888888 777666
Q ss_pred ---------CHHHHHHHHHHHHHcCCCc
Q 008887 506 ---------RNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 506 ---------~~~eA~~~l~~al~~~p~~ 524 (550)
+...|...+..+-......
T Consensus 243 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 243 AFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred hhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 7788888888777655443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.077 Score=32.30 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+++.+|.++...|++++|+.+++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46778888888888888888888888877
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.63 Score=47.34 Aligned_cols=127 Identities=16% Similarity=0.051 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcC
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK 464 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~ 464 (550)
.+.-+..|++||+.+|++...+..+-.+..+..+.++..+-+++++.. +|++..- ...|...-........
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-----~~~~~~L----W~~yL~~~q~~~~~f~ 117 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-----NPGSPEL----WREYLDFRQSNFASFT 117 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCChHH----HHHHHHHHHHHhccCc
Confidence 345678999999999999999999988999999999999999999999 7765522 1122222222233446
Q ss_pred HHHHHHHHHHHhcCCCCCCc-----------cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 465 WEEGIAHLERIGNLKEPEEP-----------KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 465 ~~eA~~~~~~al~~~~p~~~-----------~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+++....|.++++.- .... ............+.....+.|-.+.|+..++..+++|
T Consensus 118 v~~~~~~y~~~l~~L-~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 118 VSDVRDVYEKCLRAL-SRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHH-HHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 777777777777542 1111 1112355667777888899999999999999999988
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.27 E-value=3 Score=41.42 Aligned_cols=135 Identities=19% Similarity=0.152 Sum_probs=91.2
Q ss_pred HHHcCCCCChHHHHHHHHhhC----CCC----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhh--cCCCCChhhHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKE----PDN----INALILMGQTQLQKG-LLEEAVEYLECAISKLFL--AGHPTEPEAIDL 447 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~----p~~----~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~--~~~p~~~~~~~~ 447 (550)
...+||++.|..++.++-... |+. .+.+++.|......+ ++++|..+++++.++... ..+...++..+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999986533 433 456788999999999 999999999999998422 112333333334
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHH---HHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIA---HLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~---~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.......++.+|...+.++...+ ..+.+-... ++.+ ..+...-++..+.++.+++.+.+.+.+..-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~-------~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKP-------EVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCc-------HHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 44467788999998887664433 333332222 3333 555444455555889999999999888743
|
It is also involved in sporulation []. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.49 Score=50.82 Aligned_cols=101 Identities=7% Similarity=0.104 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+.+-|.-.++.++|..+++.|...+.. -|.+....++ .....+++.||....+.|.|.+++++|-+.+ |..+
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~-----i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~- 428 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKD-----IISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSP- 428 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh-----ccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccH-
Confidence 445566777888889999999888888 6777644444 4577788889999999999999999888876 7666
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
-.....-.+....|+-++|..+.......
T Consensus 429 ------l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 429 ------LCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ------HHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 55556666667778888888877765543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.76 Score=47.01 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=97.0
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh-hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE-AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~-~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
..+....+...+.+..+.|+++.|..++.++... ++.... .. ...+..+..+...|+.++|+..+++.++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-----~~~~~~~~~----~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQL-----NPSSESLLP----RVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-----CCcccCCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999999998876 321110 11 1444578999999999999999998887
Q ss_pred -CCCCC-------------------------CccccccchhHHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCcH
Q 008887 478 -LKEPE-------------------------EPKSKAHYYDGLVVLASALCNV------GRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 478 -~~~p~-------------------------~~~~~~~~~~~~~~La~~~~~~------g~~~eA~~~l~~al~~~p~~~ 525 (550)
..... ..........++..+|...... ++.+++...|+++.+++|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 21011 1111123567788888888777 899999999999999999999
Q ss_pred HHHHHHHhhHHHH
Q 008887 526 ELLEQLENNDEEF 538 (550)
Q Consensus 526 ~~~~~l~~~~~~~ 538 (550)
+.+..+.......
T Consensus 293 k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 293 KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 9888777644333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.32 Score=37.84 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA---LILMGQTQLQKGLLEEAVEYLECAISKLF 434 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a---~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 434 (550)
+...+.|..++.+.+.++|+...+++|+..++.... +-.+..+|...|+|++.+++..+=+++..
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688889999999999999999999988776554 44566788999999999988777666643
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.43 Score=55.42 Aligned_cols=150 Identities=16% Similarity=0.062 Sum_probs=115.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHH------HHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIP------LLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~------~~~~aL~-~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
..++..+.+......|.+.+|.+ ++.+... ..|+...++..++.++.+.|++++|+..-+++.-.......-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 44566688888888888887777 5553333 5788999999999999999999999999888765532222223
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.++. ...+.+++...+..++...|...+.++.....=...++|+..+....+++.++...++++.|..+++.++..
T Consensus 1011 s~~t----~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1011 SPNT----KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CHHH----HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3322 236778888888999999999999998876534445567777788889999999999999999999999986
Q ss_pred C
Q 008887 521 N 521 (550)
Q Consensus 521 ~ 521 (550)
+
T Consensus 1087 ~ 1087 (1236)
T KOG1839|consen 1087 N 1087 (1236)
T ss_pred H
Confidence 5
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.12 Score=37.29 Aligned_cols=40 Identities=28% Similarity=0.270 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMG 410 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg 410 (550)
-++.+|..+++.|+|++|..+.+.+|+.+|++..+.....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3456666667777777777777777777777666554433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.35 Score=48.09 Aligned_cols=110 Identities=22% Similarity=0.225 Sum_probs=80.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCCC---CCC---cc
Q 008887 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKE---PEE---PK 485 (550)
Q Consensus 413 ~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~~---p~~---~~ 485 (550)
..+.||++.|..++.|+-... +..++.....+....|+.|......+ ++++|..+++++.+.-+ ..+ +.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~----~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLL----NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHH----hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 347899999999999998873 25566677778889999999999999 99999999999998731 111 11
Q ss_pred ccccchhHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCcHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAE---AEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~e---A~~~l~~al~~~p~~~~ 526 (550)
...-...++..++.+|.+.+.++. |....+.+-...|+...
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~ 122 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPE 122 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH
Confidence 112256788899999999887654 44444444444466554
|
It is also involved in sporulation []. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.51 Score=54.38 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=77.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh----c---CHHHHHHHHHHHhcCCCC
Q 008887 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ----E---KWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 409 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~----g---~~~eA~~~~~~al~~~~p 481 (550)
...++...+.|++|+..|++..+- .|...+.. ++.+..|..+.++ | .+++|+..|++.-.. +
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 549 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES-----FPGRKEGY----EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--V 549 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc-----CCCcccch----HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--C
Confidence 456677778888888888888777 66655444 4666677776543 2 578888888885443 5
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.-+ --|...|.+|.++|+++|-+++|.-+++..|++++.-.
T Consensus 550 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 550 GAP-------LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred CCc-------hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 555 66778888899999999999999999999988887433
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.075 Score=49.97 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=55.8
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
....+.++.+.|.+.|.+++++. |+.. ..|+.+|....+.|+.+.|.+.|++.++++|++..
T Consensus 3 ~~~~~~~D~~aaaely~qal~la-p~w~-------~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA-PEWA-------AGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC-chhh-------hhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567899999999999999998 8777 89999999999999999999999999999987643
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.33 Score=47.85 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
++=..|.+.++++.|+.+.+..+..+|+++.-+...|.+|.+.|.+..|...++..++. .|.++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~-----~P~dp 249 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ-----CPEDP 249 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CCCch
Confidence 67778999999999999999999999999999999999999999999999999999999 99888
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.72 E-value=2 Score=42.76 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
++-+...+..+..+-++....||+++|+++.++..++.-- ..-..+|.+.+++|++.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 5666777888888889999999999999999999888633 23456788888888766
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.45 Score=50.57 Aligned_cols=120 Identities=14% Similarity=0.012 Sum_probs=76.7
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 008887 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (550)
Q Consensus 390 ~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~ 469 (550)
.....+++.++.+.-.+..-+..+..+|+..+|+.++..++-. .+.+.++. ....+|.++.+.|...+|-
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf-----~~~h~kdi-----~lLSlaTiL~RaG~sadA~ 269 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHF-----SSRHNKDI-----ALLSLATVLHRAGFSADAA 269 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhh-----CCcccccc-----hhhhHHHHHHHcccccchh
Confidence 3444555566666555555555556777777777777777777 44443332 4445777777777777777
Q ss_pred HHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 470 ~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
-.+-.|++-. +... .-++.++.++...|++......|..+.+.+|.+...
T Consensus 270 iILhAA~~dA-~~~t-------~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 270 VILHAALDDA-DFFT-------SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred heeehhccCC-cccc-------ccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence 7666555554 4433 446677777777777777777777777777665543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.2 Score=35.96 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH
Q 008887 422 AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 501 (550)
Q Consensus 422 A~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~ 501 (550)
.+..+++.++. +|.+. . +.+.+|..+...|++++|++.+-++++.+ ++.. ...+...+-.++
T Consensus 7 ~~~al~~~~a~-----~P~D~-~------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~-----~~~ar~~ll~~f 68 (90)
T PF14561_consen 7 DIAALEAALAA-----NPDDL-D------ARYALADALLAAGDYEEALDQLLELVRRD-RDYE-----DDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHH-----STT-H-H------HHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCC-----CCHHHHHHHHHH
T ss_pred cHHHHHHHHHc-----CCCCH-H------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccc-----ccHHHHHHHHHH
Confidence 35567788888 88887 3 78889999999999999999999999986 5442 114555666666
Q ss_pred HhcCCHHHHHHHHH
Q 008887 502 CNVGRNAEAEKYLR 515 (550)
Q Consensus 502 ~~~g~~~eA~~~l~ 515 (550)
..+|.-+.-...|+
T Consensus 69 ~~lg~~~plv~~~R 82 (90)
T PF14561_consen 69 ELLGPGDPLVSEYR 82 (90)
T ss_dssp HHH-TT-HHHHHHH
T ss_pred HHcCCCChHHHHHH
Confidence 66666444433333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.16 Score=33.97 Aligned_cols=31 Identities=32% Similarity=0.209 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 491 YDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 491 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+.++.++|.+|...|++++|..++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3678999999999999999999999998864
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.1 Score=45.97 Aligned_cols=124 Identities=18% Similarity=0.171 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhh----CCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNK----EPDNINALILMGQTQLQ---KGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~----~p~~~~a~~~lg~~~~~---~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
++++.+.++=..|..-.+|+.-+++.+..-.. .++.....+.+|-++-+ .|+.++|++.+..++... .+
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~----~~ 214 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD----EN 214 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc----CC
Confidence 67778888888999999999999998887665 45677888899999999 999999999999876552 33
Q ss_pred CChhhHHHHHHHHHHHHHHHH---------HhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACI---------RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 510 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~---------~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA 510 (550)
.++ + .+.-+|.+|. .....++|+++|+++.+.+ ++. ..=.+++.++...|...+.
T Consensus 215 ~~~---d----~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~--------Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 215 PDP---D----TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDY--------YSGINAATLLMLAGHDFET 278 (374)
T ss_pred CCh---H----HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccc--------cchHHHHHHHHHcCCcccc
Confidence 343 2 2223555543 2345889999999999996 432 2344556666666654333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.76 Score=50.82 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
..|......|-.++|+.+|+++-+ +-.+-..|...|.|++|.+..+.-=++ +- ...||
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--------HL------r~Tyy 862 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--------HL------RNTYY 862 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--------eh------hhhHH
Confidence 455556667777777777777633 234556677778888777655332222 11 12788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCC---------CCCCcc---ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLK---------EPEEPK---SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~---------~p~~~~---~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
+.+.-+...++.+.|+++|+|+-.-. +|...+ .+...-..|...|.-+...|+.|.|+.+|..+-
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 88999999999999999999753210 011000 000112567788888899999999999888763
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.6 Score=46.80 Aligned_cols=140 Identities=21% Similarity=0.128 Sum_probs=101.2
Q ss_pred HHHHcCCCCC-hHHHHHHHHhhCCCChHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 008887 378 KFLSKGDKER-PIPLLQLALNKEPDNINALIL--MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (550)
Q Consensus 378 ~~~~~g~~~~-A~~~~~~aL~~~p~~~~a~~~--lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~ 454 (550)
..+..+.... ++..+...+..++.++..+.. +...+...++...+...++.++.. +|.+. .+..+
T Consensus 39 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~-----~~~~~-------~~~~~ 106 (620)
T COG3914 39 EWLNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV-----NPENC-------PAVQN 106 (620)
T ss_pred HHhcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc-----Ccccc-------hHHHH
Confidence 3344444443 666666667788888776433 577778889998999999999988 77665 26778
Q ss_pred HHHHHHHhcCHHHHHHHHHH-HhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 455 SGVACIRQEKWEEGIAHLER-IGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~~~~~-al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
++.+....|....+...+.+ +.+.. |++..-..+....+. +++....+|+..++....+++....|.+.+....+
T Consensus 107 L~~ale~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 107 LAAALELDGLQFLALADISEIAEWLS-PDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcC-cchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 88888777777777766655 66665 776633333334444 79999999999999999999999999997654443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.49 Score=38.56 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCcccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSK--AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~--~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..+.|+|.+|++.+.+..+.. ....... .....+..++|.++...|++++|...+++++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~-~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYA-KQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 457899999999998888765 3222111 1344678899999999999999999999999865
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.16 Score=47.90 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=55.3
Q ss_pred HHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.....+|.+.|.++|.++++.-|+....|+.+|....+.|+++.|.+.|++.+++ +|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l-----dp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL-----DPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC-----Ccccc
Confidence 3466789999999999999999999999999999999999999999999999999 77665
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.08 E-value=2.3 Score=37.61 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+......-...++.+++...+...--+ .|+.++ ....-|..+...|++++|+..+++..+.. +..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvL-----rP~~~e-------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~-~~~p 78 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVL-----RPNLKE-------LDMFDGWLLIARGNYDEAARILRELLSSA-GAPP 78 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCccc-------cchhHHHHHHHcCCHHHHHHHHHhhhccC-CCch
Confidence 3445555566689999999988766666 787773 33356889999999999999999987775 5545
Q ss_pred cccccchhHHHHHHHHHHhcCCH
Q 008887 485 KSKAHYYDGLVVLASALCNVGRN 507 (550)
Q Consensus 485 ~~~~~~~~~~~~La~~~~~~g~~ 507 (550)
...-.++.|+...||.
T Consensus 79 -------~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 79 -------YGKALLALCLNAKGDA 94 (153)
T ss_pred -------HHHHHHHHHHHhcCCh
Confidence 6777888888888875
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.53 E-value=3.3 Score=45.51 Aligned_cols=124 Identities=19% Similarity=0.117 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHcC-----CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 371 ELIALSVKFLSKG-----DKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 371 ~l~~la~~~~~~g-----~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
+.+.+|..|.... +++.|..+|.++-+. +++++.+.+|.++..-. +...|.++|..|... .
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~---------G 358 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA---------G 358 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------C
Confidence 4557888888765 455688998888655 57788999999998765 678999999999877 2
Q ss_pred hhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV-GRNAEAEKYLRLA 517 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~-g~~~eA~~~l~~a 517 (550)
.. .+.+++|.||.. ..+.++|..++.++.+.+.+ .+...++..+.-- ++++.+...+...
T Consensus 359 ~~-----~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~----------~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 359 HI-----LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP----------SAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred Ch-----HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh----------hhHHHHHHHHHHccccccHHHHHHHHH
Confidence 12 377789988864 45889999999999988622 4455566554322 7777766655544
Q ss_pred HHc
Q 008887 518 AAH 520 (550)
Q Consensus 518 l~~ 520 (550)
.+.
T Consensus 424 a~~ 426 (552)
T KOG1550|consen 424 AEL 426 (552)
T ss_pred HHh
Confidence 443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.50 E-value=5.5 Score=44.89 Aligned_cols=114 Identities=18% Similarity=0.050 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
++......+.......++++|...+.++-... +.|.+....+.+....--.|.+....|+.++|.++.+.++..- |
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l---~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L-~ 489 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFL---KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL-P 489 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHh---CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-c
Confidence 56666778899999999999999999887773 2444443444444344446788899999999999999999886 5
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.+. ......++..+|.+..-.|++++|..+.+++.++.
T Consensus 490 ~~~--~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 490 EAA--YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred ccc--chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 443 11234678899999999999999999999888774
|
|
| >TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family | Back alignment and domain information |
|---|
Probab=91.47 E-value=13 Score=37.38 Aligned_cols=135 Identities=15% Similarity=0.177 Sum_probs=91.0
Q ss_pred HHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----------hhcCCCCChhhHHHH
Q 008887 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL-----------FLAGHPTEPEAIDLL 448 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~-----------~~~~~p~~~~~~~~l 448 (550)
+.+++..+.++..++.+..+|--.+.++..+.++.+.|. +++.+..+..+... +..|.|.-.+.....
T Consensus 110 ~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~W 188 (301)
T TIGR03362 110 LAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAW 188 (301)
T ss_pred HhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHH
Confidence 466777888999999999999999999999999999994 55554444433221 333333322121111
Q ss_pred HH------------------------HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 449 IV------------------------ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 449 ~~------------------------a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
+. ....-+..+...|..++|+..++..+... ..+ ...+...+.+++++.+.
T Consensus 189 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~--~s~---R~rf~~rL~~A~l~~~~ 263 (301)
T TIGR03362 189 LAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQA--REP---RERFHWRLLLARLLEQA 263 (301)
T ss_pred HHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC--CCh---HHHHHHHHHHHHHHHHc
Confidence 10 00112456678889999999998755542 122 24457788899999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 008887 505 GRNAEAEKYLRLAAAH 520 (550)
Q Consensus 505 g~~~eA~~~l~~al~~ 520 (550)
|+++-|...|+...+.
T Consensus 264 g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 264 GKAELAQQLYAALDQQ 279 (301)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987664
|
This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812). |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.34 E-value=2.9 Score=46.63 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHH-HcCCCCChHHHHHHHHhhCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 368 TPKELIALSVKFL-SKGDKERPIPLLQLALNKEP--DN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 368 ~~~~l~~la~~~~-~~g~~~~A~~~~~~aL~~~p--~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
+....+++|..++ ...++++|+.++++++.+.. +. ..+.+.++.++.+.+... |...++++++... +..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~---~~~ 133 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE---TYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh---ccC
Confidence 4445568888777 67899999999999987653 32 234567889998888888 9999999998831 111
Q ss_pred ChhhHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 441 EPEAIDLLIVASQWS-GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 441 ~~~~~~~l~~a~~~l-g~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
+..+. .+...+ ...+...+++..|++.+++..... +...+..-...+....+.++...+..+++.+..+++.
T Consensus 134 ~~~w~----~~frll~~~l~~~~~d~~~Al~~L~~~~~~a--~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 134 HSAWY----YAFRLLKIQLALQHKDYNAALENLQSIAQLA--NQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred chhHH----HHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 11111 111112 222223379999999999988874 2222222233444455666777787888888887763
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG1422 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.61 Score=42.95 Aligned_cols=91 Identities=12% Similarity=0.078 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCCCCCCCCCCcCc----------ccHHHHHHHHHHHhh--hcC
Q 008887 120 FPWWTIIVSSTVALRIAL-LPLIVLQLKKIQRIAELLPRLPPPFPPPLSG----------KRFVDQISLFRREKR--AAG 186 (550)
Q Consensus 120 lpw~~~I~~~t~~vRl~~-lPl~i~~~~~~~k~~~l~p~l~~~~~~~~~~----------~~~~~~~~l~kk~~~--~~g 186 (550)
.|--++|.++++++=+.+ ++= +-.-...||+++|.++++.|++.++. |.+++++++...+.. ..-
T Consensus 44 ~~p~lvilV~avi~gl~~~i~~--~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q 121 (201)
T COG1422 44 LPPHLVILVAAVITGLYITILQ--KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ 121 (201)
T ss_pred cccHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777776666542 321 11123456666666666665443221 123444444443331 112
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008887 187 CPSLLWFIASFAIQVPCFLVGVTSIRRMS 215 (550)
Q Consensus 187 ~~~~~~~~l~~l~q~Pifi~~~~~lr~m~ 215 (550)
.+|+. .-.++.||+|.-++.-++...
T Consensus 122 fkPM~---~~~v~tI~~F~Wl~~~~~~~~ 147 (201)
T COG1422 122 FKPML---YISVLTIPFFAWLRWFVGTGG 147 (201)
T ss_pred hhhHH---HHHHHHHHHHHHHHHHHccCc
Confidence 33333 233456777777776666543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.62 Score=49.03 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH---HHHHHHhhhcCCCCChhhHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYL---ECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~---~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+.|...+..+....|+..|.+++...|+....+.+.+.++++.+-...+...+ ..|+++ +|... .
T Consensus 379 ~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl-----n~s~~-------k 446 (758)
T KOG1310|consen 379 TEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL-----NPSIQ-------K 446 (758)
T ss_pred hhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC-----ChHHH-------H
Confidence 44555566667778999999999999999999999999999886655544444 445555 33332 4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
++++|+.++.+.+++.+|+++...+.... |.+.
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~-Ptd~ 479 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSF-PTDV 479 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcC-chhh
Confidence 99999999999999999999998777665 7554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.96 E-value=5.3 Score=44.50 Aligned_cols=126 Identities=17% Similarity=0.094 Sum_probs=85.4
Q ss_pred ChHHHHHHHHhhC---C-CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 008887 387 RPIPLLQLALNKE---P-DNINALILMGQTQL-QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (550)
Q Consensus 387 ~A~~~~~~aL~~~---p-~~~~a~~~lg~~~~-~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~ 461 (550)
.|+.+++-+++.. | ..+.+++.+|.++. +..++++|+.++++++.+ ...+. ..+....+.+-++.++.+
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l-----~~~~~-~~d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILL-----CERHR-LTDLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccc-hHHHHHHHHHHHHHHHHh
Confidence 4677777777422 1 24677889999998 899999999999999998 33322 333333466677888888
Q ss_pred hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 462 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 462 ~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.+... |...++++++.. .+...... ..-..+.....+...+++..|.+.++......
T Consensus 113 ~~~~~-a~~~l~~~I~~~-~~~~~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDS-ETYGHSAW-YYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred cCHHH-HHHHHHHHHHHH-hccCchhH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 88777 999999999875 33221111 11111122333444489999999999887765
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.81 E-value=3.5 Score=38.89 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 376 a~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
...++..++.++|+...+.-++..|.+......+-+.|+-.|+|++|...++-+.++ .|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-----~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-----SPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc-----Ccccc
Confidence 346788889999999999999999999999999999999999999999999999888 66655
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.45 E-value=3.8 Score=40.17 Aligned_cols=124 Identities=15% Similarity=0.022 Sum_probs=83.2
Q ss_pred CCChHHHHHHHHh-hCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 385 KERPIPLLQLALN-KEPD-----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 385 ~~~A~~~~~~aL~-~~p~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
.++-++.+.+.++ ...+ ..+++.++|..|.+.+|.+.+.++.++.++.... .....+.+. .-..+|..
T Consensus 91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s-----tg~KiDv~l-~kiRlg~~ 164 (412)
T COG5187 91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS-----TGLKIDVFL-CKIRLGLI 164 (412)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-----cccchhhHH-HHHHHHHh
Confidence 3344555544444 2222 3688999999999999999999999988877422 122333333 55678888
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
|..+.-.++.++.....++.. .++.+....-...|.-.....++.+|...+-..+.
T Consensus 165 y~d~~vV~e~lE~~~~~iEkG-----gDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 165 YGDRKVVEESLEVADDIIEKG-----GDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hccHHHHHHHHHHHHHHHHhC-----CCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 888777788888887777764 22233334445566666677789999988877654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.41 Score=28.73 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLE 427 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~ 427 (550)
.+++.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 567888889999999998888775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.23 E-value=4 Score=45.90 Aligned_cols=130 Identities=16% Similarity=0.099 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD---------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~ 438 (550)
+|+-....|-......++++|..+..++...-+. .++..-..|.+....|+.++|.++.+.++.. -
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~-----L 488 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ-----L 488 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----c
Confidence 4444457788889999999999999888763322 2345567889999999999999999999988 3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
|.+. ....+ .+...+|.+..-.|++++|..+.+.+.+.. .... .......+....+.++.+.|+
T Consensus 489 ~~~~-~~~r~-~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a-~~~~-~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 489 PEAA-YRSRI-VALSVLGEAAHIRGELTQALALMQQAEQMA-RQHD-VYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred cccc-chhhh-hhhhhhhHHHHHhchHHHHHHHHHHHHHHH-HHcc-cHHHHHHHHHHHHHHHHHhhH
Confidence 4333 11111 256678999999999999999998887763 1111 001112334455677888883
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=89.91 E-value=2 Score=33.56 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.-|.-++.+++.++|+..++++++.. ++.. ..+.++-.+..+|.+.|++++++++--+-+.+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~-~~~~----~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKI-TDRE----DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhc-CChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778999999999999999986 5443 45578888889999999999999876554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.78 E-value=15 Score=35.67 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcC-CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 370 KELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 370 ~~l~~la~~~~~~g-~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.+....+-+..+ .-++|+++-+.++..+|.+..+|...-.++.+.+ +..+=++++++.++- +|.+-
T Consensus 43 r~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-----npKNY----- 112 (318)
T KOG0530|consen 43 RDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-----NPKNY----- 112 (318)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-----Cccch-----
Confidence 34445555444444 4567999999999999999998887776666544 556667777777777 55554
Q ss_pred HHHHHHHHHHHHHHhcCHH-HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 448 LIVASQWSGVACIRQEKWE-EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~-eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
..|+..-.+....|+.. .-++..++++..+ ..+- -+|...-.+...-+.++.-..+..+.++.
T Consensus 113 --QvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNY-------HaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 113 --QVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNY-------HAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred --hHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccch-------hhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 25555555556666666 6666677777665 4333 34444444444444455444444444443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.66 E-value=7.8 Score=41.30 Aligned_cols=74 Identities=16% Similarity=0.015 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCcH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-NAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-~~eA~~~l~~al~~~p~~~ 525 (550)
-+.-+|.++...|+.+.|..+|..+++.. .....+..-+..++|.+|..|...|. .+++.+++.+|-+...++.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 34457899999999999999999988654 44445555666999999999999999 9999999999999876653
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.36 E-value=7.6 Score=39.92 Aligned_cols=139 Identities=11% Similarity=0.052 Sum_probs=95.9
Q ss_pred HHHHHcCCCCChHHHHHHHHhhC----C-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKE----P-----DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~----p-----~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
...+.++++.+|.+.-+..+..- . -.+..|+.+..+|...|+..+-...+...+..+. -.+.+....
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt----Lrhd~e~qa 209 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT----LRHDEEGQA 209 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh----hcCcchhHH
Confidence 34455688889888877766521 1 1345678888889899997776666666555531 121111111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
...+.+-++|...+.|+.|-....+..- |+...+. ..+...+.+|.+-.-+++|..|.+++-.+++..|++.
T Consensus 210 --vLiN~LLr~yL~n~lydqa~~lvsK~~~---pe~~snn-e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 210 --VLINLLLRNYLHNKLYDQADKLVSKSVY---PEAASNN-EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred --HHHHHHHHHHhhhHHHHHHHHHhhcccC---ccccccH-HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 1345677889999999999998887542 3222222 3456788999999999999999999999999999854
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.51 Score=28.28 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+.+.+|.++...|+.++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5688999999999999999998763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.61 Score=46.80 Aligned_cols=75 Identities=13% Similarity=0.027 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
.+.+++.+..+.+.+..|+.....+++.+ +... .+++..+..+....++++|.+.++.+...+|++.+..+.
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~-~s~t-------ka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDE-RSKT-------KAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccC-hhhC-------cHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 34468889999999999999998888876 7666 899999999999999999999999999999999987777
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+..
T Consensus 349 ~~~ 351 (372)
T KOG0546|consen 349 LEN 351 (372)
T ss_pred HHH
Confidence 665
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.24 E-value=1.7 Score=50.75 Aligned_cols=143 Identities=13% Similarity=0.017 Sum_probs=107.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKE--------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~--------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
..++..+...|++++|+..-.++.-.. |+....+.+++...+..++...|...+.++..+.-....|.+|..
T Consensus 977 ~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~ 1056 (1236)
T KOG1839|consen 977 RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT 1056 (1236)
T ss_pred HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch
Confidence 367788889999999998887775522 556778889999999999999999999999888655556656633
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
. ..-.+++..+...++++.|+++.+.|......-...........+..+++.+..++++..|....+....
T Consensus 1057 a----~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1057 A----LSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred h----hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 2 2335788888888999999999999998652212223335667788888888888888888777665543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.20 E-value=5.7 Score=41.93 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH
Q 008887 421 EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 500 (550)
Q Consensus 421 eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~ 500 (550)
.-...|+.|+.. .+.+. . .|.....-..+.+.+.+--..|.+++... |+++ +.|..-|.-
T Consensus 89 rIv~lyr~at~r-----f~~D~-~------lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~-------dLWI~aA~w 148 (568)
T KOG2396|consen 89 RIVFLYRRATNR-----FNGDV-K------LWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNP-------DLWIYAAKW 148 (568)
T ss_pred HHHHHHHHHHHh-----cCCCH-H------HHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCc-------hhHHhhhhh
Confidence 345667888877 55444 1 44445554556666999999999999998 9999 999888877
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 501 LCNVGR-NAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 501 ~~~~g~-~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
.+..+. .+.|++.+.++++.+|+.+..+...
T Consensus 149 efe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 149 EFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred HHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 665555 8999999999999999999877654
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.16 E-value=4.5 Score=33.90 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=66.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHhc
Q 008887 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ-----------EKWEEGIAHLERIGN 477 (550)
Q Consensus 409 lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~-----------g~~~eA~~~~~~al~ 477 (550)
++.-++..|++-+|++..++.+.. +.++.... ..+..-|.++.++ .-.-.+++.|.++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~-----h~~~~~~~----~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~ 72 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR-----HGEDESSW----LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE 72 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH-----ccCCCchH----HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc
Confidence 467788999999999999999998 44433111 1233344444322 233467888888888
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+. |... ..++.+|.-+.....|+++..-.+++|.+.
T Consensus 73 Ls-p~~A-------~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 73 LS-PDSA-------HSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred cC-hhHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 86 7554 777788877666667888888888877653
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.07 E-value=17 Score=38.59 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=68.0
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcC-HH
Q 008887 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEK-WE 466 (550)
Q Consensus 388 A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~-~~ 466 (550)
=..+|++|+...++++..|........+.+.+.+-...|.+++.. +|+++ . .|...|.-.+.-+. .+
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-----Hp~~~-d------LWI~aA~wefe~n~ni~ 157 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-----HPNNP-D------LWIYAAKWEFEINLNIE 157 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCc-h------hHHhhhhhHHhhccchH
Confidence 346788888888999999998888777778799999999999999 88887 3 45555555555444 89
Q ss_pred HHHHHHHHHhcCCCCCCcc
Q 008887 467 EGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 467 eA~~~~~~al~~~~p~~~~ 485 (550)
.|...|.++++.+ |+++.
T Consensus 158 saRalflrgLR~n-pdsp~ 175 (568)
T KOG2396|consen 158 SARALFLRGLRFN-PDSPK 175 (568)
T ss_pred HHHHHHHHHhhcC-CCChH
Confidence 9999999999998 88883
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.03 E-value=7.3 Score=38.49 Aligned_cols=130 Identities=15% Similarity=0.051 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~-~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+.+....++.++...|+.+.|...+...=....+. .......-..+.+.....+..+ +++.+.. +|++. .
T Consensus 167 ~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~-l~~~~aa-----dPdd~-~-- 237 (304)
T COG3118 167 NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD-LQRRLAA-----DPDDV-E-- 237 (304)
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHh-----CCCCH-H--
Confidence 45667799999999999999888877642222111 1111112233334333333332 3344444 77776 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
+.+.+|..+...|++++|.+.+-..++.+ .... ...+...+-.++...|..+.+...|++
T Consensus 238 ----aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d-~~~~-----d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 238 ----AALALADQLHLVGRNEAALEHLLALLRRD-RGFE-----DGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccc-----CcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 67789999999999999999998888775 2211 114556666666666644444444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=88.82 E-value=13 Score=38.97 Aligned_cols=135 Identities=9% Similarity=-0.018 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-----ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~-----a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++-.|..+..++++.+|++.|.+..+.-.+.+. .+.++-.-.+-.++.+.=...+-..-+. .|..+ +
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~-----~~~s~-~-- 80 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ-----FGKSA-Y-- 80 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh-----cCCch-H--
Confidence 347888999999999999999999886655432 2222222223344444433333333223 44333 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccccc--------chhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH--------YYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~--------~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
.....|...+++|+|++|++.+..--+.. .+......+ .+-.-...|.|+.+.|++.|++..+++..
T Consensus 81 ----l~LF~~L~~Y~~k~~~kal~~ls~w~~~~-~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 81 ----LPLFKALVAYKQKEYRKALQALSVWKEQI-KGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred ----HHHHHHHHHHHhhhHHHHHHHHHHHHhhh-cccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 34457888999999999999987654442 111100000 12223456889999999999999998876
Q ss_pred H
Q 008887 519 A 519 (550)
Q Consensus 519 ~ 519 (550)
.
T Consensus 156 ~ 156 (549)
T PF07079_consen 156 E 156 (549)
T ss_pred H
Confidence 5
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.81 E-value=7.7 Score=41.76 Aligned_cols=103 Identities=23% Similarity=0.175 Sum_probs=83.0
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLEC-AISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~-al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
+.......++...+.-.+..++..+|+++.+..++|......|....+...+.+ +... .|.+.+....+...+.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWL-----SPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-----CcchHHHHhhHHHHHH
Confidence 455666677777888899999999999999999999999988888877777666 6666 6777655555553344
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+|......|+.+++....+++.+.. |..+
T Consensus 148 -~~~~~~~l~~~~~~~~~l~~~~d~~-p~~~ 176 (620)
T COG3914 148 -LGRYLKLLGRTAEAELALERAVDLL-PKYP 176 (620)
T ss_pred -HHHHHHHhccHHHHHHHHHHHHHhh-hhhh
Confidence 8999999999999999999999997 8765
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.71 E-value=15 Score=40.08 Aligned_cols=74 Identities=11% Similarity=-0.086 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
...+-|.-.++..+|..+++.|+..+... +.|..+... +....+++.||..+.+.|+|.++++++-+.+|.+.-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i-~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDI-ISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence 34466777889999999999999999987 777655554 688889999999999999999999999999988764
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.50 E-value=13 Score=37.69 Aligned_cols=112 Identities=13% Similarity=-0.015 Sum_probs=76.5
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 389 IPLLQLALNKEPDNINALILMGQTQLQKGL------------LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 389 ~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~------------~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
...|++.++.+|++..+|..+.......-. .+..+..|++|++. +|.+. . .+..+-
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-----np~~~-~------L~l~~l 72 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-----NPDSE-R------LLLGYL 72 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-----CCCCH-H------HHHHHH
Confidence 356888899999999999988876655433 34667789999999 77555 2 222334
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH---HhcCCHHHHHHHHHHHHHc
Q 008887 457 VACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL---CNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~---~~~g~~~eA~~~l~~al~~ 520 (550)
.+..+..+.++..+.+++++..+ |.+. ..|..+-... ...-.+++....|.++++.
T Consensus 73 ~~~~~~~~~~~l~~~we~~l~~~-~~~~-------~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 73 EEGEKVWDSEKLAKKWEELLFKN-PGSP-------ELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-CCCh-------HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 44556678888899999999997 7766 4554433322 2233567777777776653
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.12 E-value=5.1 Score=39.94 Aligned_cols=107 Identities=18% Similarity=0.076 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
-.+++..+|..|++.||-+.|++.+++..+.....|. ..|.+. ....+|..|....-..+.++-....++..
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~-----kiDVvf-~~iRlglfy~D~~lV~~~iekak~liE~G-- 174 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH-----KIDVVF-YKIRLGLFYLDHDLVTESIEKAKSLIEEG-- 174 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc-----chhhHH-HHHHHHHhhccHHHHHHHHHHHHHHHHhC--
Confidence 3688999999999999999999999888777322222 222222 45567777766555555555555555443
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.++.+....-...|.-.....++.+|...|-..+.
T Consensus 175 ---gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 175 ---GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred ---CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 22233334444555566667789999988877654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.08 E-value=2.4 Score=46.20 Aligned_cols=81 Identities=23% Similarity=0.169 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
-.++.++|..+.....|++|.++|.+.-.. . ++..|++...++++-..+.+. + |+
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e---------~~~ecly~le~f~~LE~la~~---L--pe 850 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----------E---------NQIECLYRLELFGELEVLART---L--PE 850 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------H---------hHHHHHHHHHhhhhHHHHHHh---c--Cc
Confidence 356677777777777777777777666333 1 244555555555443333322 1 43
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+. ..+-.+|..+...|.-++|.++|-
T Consensus 851 ~s-------~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 851 DS-------ELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred cc-------chHHHHHHHHHhhchHHHHHHHHH
Confidence 33 445555555555565555555443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.76 E-value=2.3 Score=45.02 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=69.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHhcCCCCCCccc
Q 008887 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ---EKWEEGIAHLERIGNLKEPEEPKS 486 (550)
Q Consensus 410 g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~---g~~~eA~~~~~~al~~~~p~~~~~ 486 (550)
|.-.+..+.+..|+..|.+++.. .|... ..+.+.+.++++. |+.-.|+..+-++++++ |...
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~-----~~~~~-------~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln-~s~~-- 445 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQY-----VPDAI-------YLLENRAAALMKRKWRGDSYLALRDCHVALRLN-PSIQ-- 445 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhh-----ccchh-------HHHHhHHHHHHhhhccccHHHHHHhHHhhccCC-hHHH--
Confidence 33334445677788888888877 33332 1344566666654 45556777777888887 7555
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 487 ~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.+++.|++++.+++++.+|.+....+....|.+..
T Consensus 446 -----kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 446 -----KAHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred -----HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 89999999999999999999998877777774443
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.6 Score=28.93 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
+++..||.+.+..++|++|++.|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999884
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=87.52 E-value=4.2 Score=39.64 Aligned_cols=84 Identities=19% Similarity=0.041 Sum_probs=61.8
Q ss_pred ChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHH
Q 008887 387 RPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~ 460 (550)
..++++++|++.... .......+|..|+..|+|++|+++|+.+... ...+. +...+......+..|+.
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~-----yr~eg-W~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS-----YRREG-WWSLLTEVLWRLLECAK 229 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHhCC-cHHHHHHHHHHHHHHHH
Confidence 346667776663321 2344568999999999999999999999766 23333 55556567778899999
Q ss_pred HhcCHHHHHHHHHHHh
Q 008887 461 RQEKWEEGIAHLERIG 476 (550)
Q Consensus 461 ~~g~~~eA~~~~~~al 476 (550)
..|+.++.+...-+.+
T Consensus 230 ~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 230 RLGDVEDYLTTSLELL 245 (247)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 9999999888876654
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=86.89 E-value=2.2 Score=46.70 Aligned_cols=122 Identities=17% Similarity=0.053 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
+.|.-|...|+|+.|+++|-++= ....--..|-+.|+|++|.+.-+++... ... . ..|.
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~~-------e~t-~-----~~yi 828 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHGP-------EAT-I-----SLYI 828 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcCc-------hhH-H-----HHHH
Confidence 67888888999999999987752 2233345667889999888877666322 111 1 1333
Q ss_pred HHHHHHHHhcCHHHHHHHH-------------HHHhcCCCCCC-----ccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHL-------------ERIGNLKEPEE-----PKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~-------------~~al~~~~p~~-----~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
.-+.-+.++|++.+|.++| ++.-..+ +- .....+..+.+..+|.-|...|+..+|...|-
T Consensus 829 akaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~d--dmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 829 AKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDD--DMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcch--HHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 4455555666666555443 3311100 00 00112345778889999999999999998877
Q ss_pred HHH
Q 008887 516 LAA 518 (550)
Q Consensus 516 ~al 518 (550)
++-
T Consensus 907 ea~ 909 (1636)
T KOG3616|consen 907 EAG 909 (1636)
T ss_pred hhh
Confidence 653
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.57 E-value=17 Score=39.10 Aligned_cols=136 Identities=21% Similarity=0.215 Sum_probs=93.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhh---------------------CCCChHH---HHHHHHHHHHcCCHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK---------------------EPDNINA---LILMGQTQLQKGLLEEAV 423 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~---------------------~p~~~~a---~~~lg~~~~~~g~~~eA~ 423 (550)
..+.+..+|..+..+||.+.|..+.+++|=. +|.|-.. .+..-.-+.+.|-|.-|.
T Consensus 283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTAL 362 (665)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHH
Confidence 4567789999999999999999998888751 1333322 233445567889999999
Q ss_pred HHHHHHHHHhhhcCCCC-ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cCCCCCCccccccchhHHHHH
Q 008887 424 EYLECAISKLFLAGHPT-EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG-----NLKEPEEPKSKAHYYDGLVVL 497 (550)
Q Consensus 424 ~~~~~al~l~~~~~~p~-~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al-----~~~~p~~~~~~~~~~~~~~~L 497 (550)
++.+-.+.+ +|. +|.. ..+.+-....+..+|+--++.++..- ..- |+.. .-..+
T Consensus 363 E~cKlllsL-----dp~eDPl~------~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~-PN~~--------yS~Al 422 (665)
T KOG2422|consen 363 EWCKLLLSL-----DPSEDPLG------ILYLIDIYALRAREYQWIIELSNEPENMNKLSQL-PNFG--------YSLAL 422 (665)
T ss_pred HHHHHHhhc-----CCcCCchh------HHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhc-CCch--------HHHHH
Confidence 999999999 887 6633 33334445556677777777666542 222 3222 34466
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHHcCCC
Q 008887 498 ASALCNVGR---NAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 498 a~~~~~~g~---~~eA~~~l~~al~~~p~ 523 (550)
|..|..... ...|...+.+|+.+.|.
T Consensus 423 A~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 423 ARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 666665555 67888999999998874
|
|
| >KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.51 E-value=8.6 Score=38.29 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
..+...+|.+|.+.++|+.|.+.+ .++.+. . .+... ..+.....+..+|..|.+.++..+|..+..++--.. .+
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~--t-g~~~~-d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~-a~ 176 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVL-VGIPLD--T-GQKAY-DVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQ-AE 176 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-hccCcc--c-chhhh-hhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-hc
Confidence 456788999999999999998876 333330 1 11111 223333467889999999999999999988754332 11
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
. .+..-........|+++...+++-||.+.|.+....
T Consensus 177 ~-~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 177 S-SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred c-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111222344456677777888888888777766553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.49 E-value=3.9 Score=40.40 Aligned_cols=61 Identities=26% Similarity=0.220 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
++..++..+...|+++.+++.+++.++.+ |-+. ..|..+-..|.+.|+...|+..|++.-+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E-------~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDE-------PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccch-------HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 66678999999999999999999999998 8777 8999999999999999999999998766
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.16 E-value=3.8 Score=43.53 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.-+++| .+.|+++.|.+.. ..-++...|..||...+.+|+++-|+++|+++-.. .
T Consensus 320 D~~~rFeLA---l~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-----------~--- 377 (443)
T PF04053_consen 320 DPDHRFELA---LQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF-----------S--- 377 (443)
T ss_dssp -HHHHHHHH---HHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H-----------H---
T ss_pred ChHHHhHHH---HhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc-----------c---
Confidence 445445554 5566666555543 23457788999999999999999999999887444 1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+...|.-.|+.++=.+..+.+.... . +...-.++...|+.++..+.+.+
T Consensus 378 ------~L~lLy~~~g~~~~L~kl~~~a~~~~-~------------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 378 ------GLLLLYSSTGDREKLSKLAKIAEERG-D------------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHCT-HHHHHHHHHHHHHTT--------------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------ccHHHHHHhCCHHHHHHHHHHHHHcc-C------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 25666777777655555555555443 1 22223455556666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=86.08 E-value=4.7 Score=39.29 Aligned_cols=66 Identities=12% Similarity=-0.045 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
....+|.-|+..|++++|+++|+.+.... .++. -..-.......+..|+.+.|+.++.+...-+.+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~y-r~eg-W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSY-RREG-WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhCC-cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44569999999999999999999996654 2222 111234677788999999999999888765554
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=86.05 E-value=7.3 Score=45.19 Aligned_cols=137 Identities=17% Similarity=0.120 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKG-------LLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g-------~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..-.+++..+.|++|+..|++.-...|+- .++.+..|.+...+- .+++|+..|++... .|..|-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 553 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG------GVGAPL 553 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC------CCCCch
Confidence 44457888899999999999998888764 567788888877542 35556665555422 344441
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
-|..-|.+|.++|+|+|-++++.-+++.. |..+.-..-.-...+.+-++... +...|....--++...|.
T Consensus 554 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 554 -------EYLGKALVYQRLGEYNEEIKSLLLALKRY-SQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPE 623 (932)
T ss_pred -------HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcc
Confidence 23356778999999999999999999998 77763222222334444444443 345666777777777777
Q ss_pred cHH
Q 008887 524 YNE 526 (550)
Q Consensus 524 ~~~ 526 (550)
...
T Consensus 624 ~~~ 626 (932)
T PRK13184 624 KIS 626 (932)
T ss_pred ccc
Confidence 554
|
|
| >PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel | Back alignment and domain information |
|---|
Probab=85.54 E-value=0.62 Score=31.98 Aligned_cols=15 Identities=47% Similarity=0.518 Sum_probs=10.5
Q ss_pred CchHHHHHHHhhhcc
Q 008887 1 MATAKLLLLQLRRCS 15 (550)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (550)
||+||+|=++||-+.
T Consensus 1 MASRR~lSSlLRSss 15 (49)
T PF11421_consen 1 MASRRLLSSLLRSSS 15 (49)
T ss_dssp ---SHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHh
Confidence 999999999999854
|
CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.33 E-value=1.8 Score=29.85 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 494 LVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 494 ~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.+.||.+|.++|+++.|++.+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35799999999999999999999995
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=84.78 E-value=13 Score=38.89 Aligned_cols=131 Identities=16% Similarity=0.042 Sum_probs=74.4
Q ss_pred ChHHHHHHHHhhCCCChHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHhhhcCCCC-ChhhHHHHHHHHHHHHHHHHHhc
Q 008887 387 RPIPLLQLALNKEPDNINALILMGQTQ--LQKGLLEEAVEYLECAISKLFLAGHPT-EPEAIDLLIVASQWSGVACIRQE 463 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~~~~a~~~lg~~~--~~~g~~~eA~~~~~~al~l~~~~~~p~-~~~~~~~l~~a~~~lg~~~~~~g 463 (550)
+..+..+...+.+|+...++..+...+ ....+..+-++..++........++.. .+-....-..+...+.+++.-.|
T Consensus 57 ~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLG 136 (404)
T PF10255_consen 57 KTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLG 136 (404)
T ss_pred CCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhcc
Confidence 333444444444466555554444333 345556665555544321110011111 11011111114455678889999
Q ss_pred CHHHHHHHHHHHhcCCCCCC--ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 464 KWEEGIAHLERIGNLKEPEE--PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 464 ~~~eA~~~~~~al~~~~p~~--~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+|..|++.++. ++.+ ... ..........++.+|-+|..++||.+|++.|..++.
T Consensus 137 DY~~Alk~l~~-idl~-~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 137 DYYQALKVLEN-IDLN-KKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred CHHHHHHHhhc-cCcc-cchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876 4443 221 111223558899999999999999999999998764
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.81 E-value=3.4 Score=40.32 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
++=..+...++.+.|....++.+..+|+++.-+-..|.+|.+.|.+.-|++.++..++. .|+++
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~-----~P~~~ 249 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH-----CPDDP 249 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh-----CCCch
Confidence 44457889999999999999999999999999999999999999999999999999999 88888
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=83.41 E-value=27 Score=36.40 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCCh--HHHHHHHHHHH--HcCCHHHHHHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNI--NALILMGQTQL--QKGLLEEAVEYLECAISK 432 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~--~a~~~lg~~~~--~~g~~~eA~~~~~~al~l 432 (550)
..+..+++.++|..|.+.++.....-|+.. ..+..+...|. ..-++++|.+++++....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 788899999999999999999988633333 35555555555 556788999999888765
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=83.22 E-value=6.1 Score=40.79 Aligned_cols=58 Identities=21% Similarity=0.152 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
-.+..||.+.++.+-|+...-+.+.++ |... .-+...|.|...+.+|.+|.+..-.+.
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~ln-P~~f-------rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLN-PSYF-------RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcC-cchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999997 8666 778888999999999999987665543
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=83.20 E-value=3.7 Score=26.87 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH--HHHHHHcCCCc
Q 008887 492 DGLVVLASALCNVGRNAEAEKY--LRLAAAHNPQY 524 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~--l~~al~~~p~~ 524 (550)
+.++.+|-.+.+.|++++|+.. |+-+..+++.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678899999999999999999 55777777653
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.12 E-value=5.6 Score=38.86 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
...++-..+.+.++++.|..+.++.+..+ |+++ .-+.-.|.+|.++|.+.-|++.+...++..|+...+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~-P~dp-------~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLN-PEDP-------YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhC-CCCh-------hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 44467788889999999999999999998 9998 6677889999999999999999999999999987644
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.89 E-value=6.1 Score=42.89 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCCCChHHHH----------HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 374 ALSVKFLSKGDKERPIPLL----------QLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~----------~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..|..+...|+.++|+... +-+-+++-.+.+.+...+..+.....+.-|.+.|++.-..
T Consensus 708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------- 776 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------- 776 (1081)
T ss_pred HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----------
Confidence 3455567777777766542 2222233344444555555555555555555555444222
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
. .+-..+.+.+++++|....++.-+.- + ++|+-.|+-+.+.++++||.+.|-++
T Consensus 777 k---------siVqlHve~~~W~eAFalAe~hPe~~-~----------dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 777 K---------SLVQLHVETQRWDEAFALAEKHPEFK-D----------DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred H---------HHhhheeecccchHhHhhhhhCcccc-c----------cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 1 24456778899999998888755553 2 56778888888888888888777665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.69 E-value=4.5 Score=39.95 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+.+++..+...|+++.+++.+++.+..+|.+-.+|..+=..|+..|+...|+..|++.-..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 44578889999999999999999999999999999999999999999999999999888765
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.59 E-value=27 Score=34.40 Aligned_cols=128 Identities=10% Similarity=0.024 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC--------CC--ChHHHH---HH-HHHHHHcCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE--------PD--NINALI---LM-GQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~--------p~--~~~a~~---~l-g~~~~~~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
+.|.......|+..|++.++++++.- +. +.+.-. .+ -+++.+.++|.+.+.+.-+-.+. |
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~------p 113 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV------P 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC------c
Confidence 56667788889999999999998832 11 112211 12 36677899999988765444332 2
Q ss_pred CChhhHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 440 TEPEAIDLLIVASQWSGV-ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~-~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
.+- ...+. .++. .|-+.|+.....+.-..-++. |++.....+..-+-..+-.++.=+|.++||++...
T Consensus 114 Ekl--PpkIl----eLCILLysKv~Ep~amlev~~~WL~~--p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 114 EKL--PPKIL----ELCILLYSKVQEPAAMLEVASAWLQD--PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ccC--CHHHH----HHHHHHHHHhcCHHHHHHHHHHHHhC--cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 221 11122 2554 466888888888888777765 66654444444556666677778999999998873
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.38 E-value=2.5 Score=28.05 Aligned_cols=30 Identities=13% Similarity=-0.069 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 492 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+++..||.+-...++|++|...|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=81.47 E-value=15 Score=31.32 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH---HHHHHHHHHHHhcCHHHHHHHHH----HHhcC
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV---ASQWSGVACIRQEKWEEGIAHLE----RIGNL 478 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~---a~~~lg~~~~~~g~~~eA~~~~~----~al~~ 478 (550)
+..+|....+.+++-.++-+|++|+.+..........+..+.+.. ..+++|..+..+|+.+-.++|++ +++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888889999999999999999888544433333333333321 56889999999999999999986 44556
Q ss_pred CCCCCc
Q 008887 479 KEPEEP 484 (550)
Q Consensus 479 ~~p~~~ 484 (550)
- |.++
T Consensus 84 i-PQCp 88 (140)
T PF10952_consen 84 I-PQCP 88 (140)
T ss_pred c-cCCC
Confidence 5 7666
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=81.24 E-value=3.4 Score=40.62 Aligned_cols=62 Identities=16% Similarity=0.024 Sum_probs=48.9
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 008887 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (550)
Q Consensus 388 A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~ 461 (550)
|+.+|.+|....|++...++++|.++...|+.-+|+-+|-+++... .|... +..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~----~Pf~~--------A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR----IPFPS--------ARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS----B--HH--------HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC----CCcHH--------HHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999998552 33322 55567766665
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=81.15 E-value=5.8 Score=40.95 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC--------C-----CCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE--------P-----DNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~--------p-----~~~-----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
.-|..++++++|..|..-|..+|++. | ++. ..--.+..+|++.++.+.|+.+..+.+.+
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l--- 257 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL--- 257 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc---
Confidence 56678888888888888888888843 1 121 12346889999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
||.+.. -+.+.|.|+..+.+|.+|...+--+.
T Consensus 258 --nP~~fr-------nHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 258 --NPSYFR-------NHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred --Ccchhh-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888872 33456888888889999887665443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.97 E-value=45 Score=35.87 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+-+.++.+-..+..+ .+++..+.|++.+...|..+.+|.....-.+..++|+.-...|.+|+..
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3555666666666555 8999999999999999999999999999999999999999999999877
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.72 E-value=12 Score=34.95 Aligned_cols=86 Identities=8% Similarity=0.001 Sum_probs=59.3
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 008887 376 SVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (550)
Q Consensus 376 a~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~ 454 (550)
...+..+-.-++|...|.++-... -++++..+.+|..|. ..|.++|++.+-+++++. ++++.-..+ ....
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~----~~~~~~n~e----il~s 183 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS----NPDDNFNPE----ILKS 183 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc----CCCCCCCHH----HHHH
Confidence 334444434456666666654322 367899999998776 789999999999999994 333121332 4446
Q ss_pred HHHHHHHhcCHHHHHH
Q 008887 455 SGVACIRQEKWEEGIA 470 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~ 470 (550)
|+..+.++|++++|--
T Consensus 184 Las~~~~~~~~e~AYi 199 (203)
T PF11207_consen 184 LASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHhcchhhhhh
Confidence 9999999999998853
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=80.66 E-value=52 Score=33.25 Aligned_cols=136 Identities=17% Similarity=0.089 Sum_probs=90.2
Q ss_pred HHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQ-----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~-----~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
....+-.+++..++.+++... |+-....-.++.++.. .-||..-..+|+..... .|+.. .-
T Consensus 266 lW~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~-----apSPv--------V~ 332 (415)
T COG4941 266 LWDRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA-----APSPV--------VT 332 (415)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh-----CCCCe--------Ee
Confidence 345555677888888888754 3333333334433332 34677777777666666 44443 22
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
.|.+.+.....-.+.++...+...+. |.-. .+...+...|..+.++|+.+||...|++++.+.++..+......
T Consensus 333 LNRAVAla~~~Gp~agLa~ve~L~~~--~~L~----gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 333 LNRAVALAMREGPAAGLAMVEALLAR--PRLD----GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ehHHHHHHHhhhHHhHHHHHHHhhcc--cccc----cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 35677666666677788877766554 3222 34467788999999999999999999999999998887655444
Q ss_pred h
Q 008887 533 N 533 (550)
Q Consensus 533 ~ 533 (550)
+
T Consensus 407 r 407 (415)
T COG4941 407 R 407 (415)
T ss_pred H
Confidence 4
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.41 E-value=44 Score=30.62 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCC--CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEP--DN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p--~~--~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+....|......|+...|+..|.++-+..+ .- -.+...-+.++...|.|++-....+..- .+.++...
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa-------~d~n~mR~- 167 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA-------GDGNPMRH- 167 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhcc-------CCCChhHH-
Confidence 445788889999999999999999876443 22 2345556777888999987666443321 23333221
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+.-.||.+.++.|++.+|..+|+...+- ...+
T Consensus 168 ---sArEALglAa~kagd~a~A~~~F~qia~D--a~ap 200 (221)
T COG4649 168 ---SAREALGLAAYKAGDFAKAKSWFVQIAND--AQAP 200 (221)
T ss_pred ---HHHHHHhHHHHhccchHHHHHHHHHHHcc--ccCc
Confidence 25667999999999999999999987663 4444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 1e-15
Identities = 68/496 (13%), Positives = 148/496 (29%), Gaps = 139/496 (28%)
Query: 100 SSLPVRALISF-LDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRL 158
+ + + +S+ + DF F W + ++ + +L ++ Q+ R
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDP-----NWTSRS 217
Query: 159 PPPFPPPLSGKRFVDQISLFRREKRAAGCPSLL--------WFIASFAIQVPCFLVGVTS 210
L ++ + K C LL +F + C ++ +T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLS--CKIL-LTT 272
Query: 211 IRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKEN 270
R F+ +T++ ++ T++ L + +L +
Sbjct: 273 --R----------------FKQVTDF------------LSAATTTHISLDHHSMTLTPDE 302
Query: 271 GLLGLLAKYYKSYLNLMT--LPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK-HPASRT 327
LL KY L+ LP + L +P +
Sbjct: 303 VK-SLLLKY----LDCRPQDLP--------RE------------------VLTTNPRRLS 331
Query: 328 MLGLPDKVVPAAARKPEEIDTLETTLESPAKQL----KISVENLTPKEL----IALSVKF 379
++ + + T + +L + S+ L P E LSV F
Sbjct: 332 IIA---------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-F 381
Query: 380 LSKGDKERPIP--LLQLALNKEPDNINALILMGQTQL-QKGLLEEAVEYLECAISKLFLA 436
IP LL L + +++ +L + L+E+ + +I ++L
Sbjct: 382 ----PPSAHIPTILLSLIWFDVIKSDVMVVV---NKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 437 GHPTEPEAIDL--LIVASQWSGVACIRQEK----WEEG-----IA-HLERIGNLKEPEEP 484
L IV ++ + + + I HL+ I + +
Sbjct: 435 LKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 485 KSKAHYYDGLVVLASALCNVGRNAEA-----------EKYLRLAAAHNPQYNELLEQLEN 533
+ + D L + + A + Y ++P+Y L+ + +
Sbjct: 494 RMV--FLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 534 NDEEFVSDLSSSRRRD 549
+ +L S+ D
Sbjct: 551 FLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 4e-07
Identities = 71/485 (14%), Positives = 145/485 (29%), Gaps = 160/485 (32%)
Query: 3 TAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHV-------HL 55
+ + +L L++ Y P + H N + + +R +P+ ++
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 56 YHSGSAD-------------DSSVGGDGVGDRYSEVPI--------PVETVNLSERVIES 94
++ + + V + + + P E +L + ++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 95 IAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIV------------ 142
LP L T P R++++ +
Sbjct: 314 ---RPQDLPREVL----------TTNP-----------RRLSIIAESIRDGLATWDNWKH 349
Query: 143 LQLKKIQRIAEL-LPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCP----SLLWFIASF 197
+ K+ I E L L P K F +S+F A P SL+WF
Sbjct: 350 VNCDKLTTIIESSLNVLEPA----EYRKMFDR-LSVFPPS---AHIPTILLSLIWFDVIK 401
Query: 198 AIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVL--MAGLH-- 253
+ +V + ++ P + T + + L LH
Sbjct: 402 SD---VMVVVNKLHKYSLVEKQP----------KESTISIPSIYLELKVKLENEYALHRS 448
Query: 254 ----YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQG-------- 301
Y N+ +F + L L +Y+ Y +G+++
Sbjct: 449 IVDHY-NIPKTFDSDDLIPPY-----LDQYF--Y--------SHIGHHLKNIEHPERMTL 492
Query: 302 -SLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQL 360
+V+ F ++Q ++H ++ A ++TL+ QL
Sbjct: 493 FRMVFL----DFRFLEQ-KIRHDST------------AWNASGSILNTLQ--------QL 527
Query: 361 K-----ISVENLTPKELIALSVKFLSKGD----KERPIPLLQLALNKEPDNINALILMGQ 411
K I + + L+ + FL K + + LL++AL E + A+
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE---AIFEEAH 584
Query: 412 TQLQK 416
Q+Q+
Sbjct: 585 KQVQR 589
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 2e-12
Identities = 39/172 (22%), Positives = 59/172 (34%), Gaps = 27/172 (15%)
Query: 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
+ L+ + GD E +EPDN L+L+ Q L+ + + AI
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYY 491
+ +P EA L G + + +E I H LK P Y
Sbjct: 62 Q-----NPLLAEAYSNL-------GNVYKERGQLQEAIEHYRHALRLK----PDFIDGYI 105
Query: 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
+ LA+AL G A + A +NP LL+ L +E
Sbjct: 106 N----LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEE 153
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 31/167 (18%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
+ G E A+ +P+ A +G +G + A+ + E A++
Sbjct: 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----D 199
Query: 439 PTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 496
P +A + G ++ +A R +L P H
Sbjct: 200 PNFLDA---------YINLGNVLKEARIFDRAVAAYLRALSLS-PNHA--VVHGN----- 242
Query: 497 LASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
LA G A R A P + + L++ + E
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 5e-08
Identities = 33/167 (19%), Positives = 46/167 (27%), Gaps = 31/167 (18%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
++ GD E + AL PD +G G LEEA AI
Sbjct: 111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-----Q 165
Query: 439 PTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 496
P A WS G Q + I H E+ L P A+
Sbjct: 166 PNFAVA---------WSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFL--DAYIN----- 208
Query: 497 LASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
L + L A A + +P + + + D
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 5e-07
Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 27/162 (16%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
+ +G + I + A+ +P +A + +KG + EA + A+
Sbjct: 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-----C 301
Query: 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 498
PT ++++ L Q EE + + + PE AH LA
Sbjct: 302 PTHADSLNNL-------ANIKREQGNIEEAVRLYRKALEVF-PEFA--AAHSN-----LA 346
Query: 499 SALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLEN 533
S L G+ EA + + A +P + + L+++++
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 20/169 (11%)
Query: 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424
E + + I+ + + ++ + G +L++G L +
Sbjct: 27 EEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTIL 86
Query: 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484
++E AI + P + EA L G+ E + I L+R L+ P
Sbjct: 87 FMEAAILQ-----DPGDAEAWQFL-------GITQAENENEQAAIVALQRCLELQ-PNNL 133
Query: 485 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533
KA LA + N +A + L+ NP+Y L++ +
Sbjct: 134 --KALMA-----LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG 175
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 27/206 (13%), Positives = 57/206 (27%), Gaps = 37/206 (17%)
Query: 350 ETTLESPAKQLKISVEN--LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALI 407
+ T+ + K EN +K L +GD I ++ A+ ++P + A
Sbjct: 44 QVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQ 103
Query: 408 LMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS--GVACIRQEKW 465
+G TQ + + A+ L+ + P +A V+
Sbjct: 104 FLGITQAENENEQAAIVALQRCLEL-----QPNNLKA---------LMALAVSYTNTSHQ 149
Query: 466 EEGIAHLERIGNLKEPEEPK-SKAHYYDGLVV-----LASALCNVGRNAEAEKYLRLAAA 519
++ L+ PK ++ + + ++ AA
Sbjct: 150 QDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205
Query: 520 HNPQYNE---------LLEQLENNDE 536
N + L +
Sbjct: 206 QNGDMIDPDLQTGLGVLFHLSGEFNR 231
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 28/164 (17%)
Query: 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL--MGQTQLQKGLLEEAVEY 425
+P +S + E L A ++ D I+ + +G G A++
Sbjct: 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235
Query: 426 LECAISKLFLAGHPTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIGNLKEPEE 483
A++ P + W+ G ++ EE + R ++
Sbjct: 236 FNAALTV-----RPEDYSL---------WNRLGATLANGDRSEEAVEAYTRALEIQ---- 277
Query: 484 PK-SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526
P ++ Y L + N+G EA A + +
Sbjct: 278 PGFIRSRYN-----LGISCINLGAYREAVSNFLTALSLQRKSRN 316
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 21/164 (12%)
Query: 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442
+++ I LQ L +P+N+ AL+ + + ++A E L+ I + +P
Sbjct: 113 ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ-----NPKYK 167
Query: 443 EA---IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 499
++ + + E + + L
Sbjct: 168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT-----GLGV 221
Query: 500 ALCNVGRNAEAEKYLRLAAAHNPQYNEL-------LEQLENNDE 536
G A A P+ L L + ++E
Sbjct: 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 20/149 (13%)
Query: 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442
D R + L+ A+ P + A +++ +L G ++ LA HP P
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRG-----LALHPGHP 57
Query: 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502
EA+ L G Q++ E L++ + PE P + L AL
Sbjct: 58 EAVARL-------GRVRWTQQRHAEAAVLLQQASDAA-PEHP--GIALW-----LGHALE 102
Query: 503 NVGRNAEAEKYLRLAAAHNPQYNELLEQL 531
+ G+ A A P+ + QL
Sbjct: 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQL 131
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 41/200 (20%), Positives = 60/200 (30%), Gaps = 32/200 (16%)
Query: 339 AARKPEEIDTLETTLESPAKQLKISVENLTPKELIA---LSVKFLSKGDKERPIPLLQLA 395
A P E+ L + P++ +A L+ L GD +Q
Sbjct: 2 TADGPRELLQLRAAVR------------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRG 49
Query: 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455
L P + A+ +G+ + + EA L+ A P P L
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEHPGIALWL------- 97
Query: 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515
G A + E A R L PEEP A L+ LC+ +R
Sbjct: 98 GHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQ----LLNWRRRLCDWRALDVLSAQVR 152
Query: 516 LAAAHNPQYNELLEQLENND 535
A A E L +
Sbjct: 153 AAVAQGVGAVEPFAFLSEDA 172
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 1e-10
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 23/145 (15%)
Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
L + D + L +G Q Q G ++A + + + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC-----MLDHYDARYFLGL--- 58
Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511
G +E+ + + EP + ++ A +G AE
Sbjct: 59 ----GACRQSLGLYEQALQSYSYGALMD-INEP--RFPFH-----AAECHLQLGDLDGAE 106
Query: 512 KYLRLA---AAHNPQYNELLEQLEN 533
A AA P + L +
Sbjct: 107 SGFYSARALAAAQPAHEALAARAGA 131
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-10
Identities = 28/126 (22%), Positives = 35/126 (27%), Gaps = 20/126 (15%)
Query: 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461
+ G + L+ L EA E K P EA L G+
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSL-------GLTQAE 63
Query: 462 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521
EK I L L P+ LA + N A LR
Sbjct: 64 NEKDGLAIIALNHARMLD-PK-------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
Query: 522 PQYNEL 527
PQY +L
Sbjct: 116 PQYEQL 121
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 12/98 (12%)
Query: 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436
+ L + + KEP+ A +G TQ + A+ L A
Sbjct: 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---- 80
Query: 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER 474
P + L V+ + +A L
Sbjct: 81 -DPKDIAVHAAL-------AVSHTNEHNANAALASLRA 110
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 4e-10
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 24/171 (14%)
Query: 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424
++ K L++ + + ++ + L K P+N++ L + Q+ +G ++A+
Sbjct: 50 SEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALR 109
Query: 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEE 483
E + A L G E+ ++ + + +
Sbjct: 110 MYEKILQL-----EADNLAANIFL-------GNYYYLTAEQEKKKLETDYKKLSSP---- 153
Query: 484 PK-SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533
K A Y DGL + R +A L+ P E + L+
Sbjct: 154 TKMQYARYRDGL-----SKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDK 198
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 5e-06
Identities = 11/193 (5%), Positives = 46/193 (23%), Gaps = 44/193 (22%)
Query: 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL----------------MGQ 411
+ E++ + G + + + + D +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 412 TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAH 471
+ ++A + + + K P + ++ + + + ++ +
Sbjct: 63 AYKKNRNYDKAYLFYKELLQK-----APNNVDCLEAC-------AEMQVCRGQEKDALRM 110
Query: 472 LERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG-RNAEAEKYLRLAAAHNPQYNE---- 526
E+I L+ + A L + + + + + +
Sbjct: 111 YEKILQLE----ADNLAANIF----LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162
Query: 527 ---LLEQLENNDE 536
++
Sbjct: 163 DGLSKLFTTRYEK 175
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 4e-10
Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 20/160 (12%)
Query: 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
L L+ +G+ E + L + AL P+ A + Q+G L+EA+ + + AI
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYY 491
PT +A + G + + + R + +
Sbjct: 72 I-----SPTFADAYSNM-------GNTLKEMQDVQGALQCYTRAIQI--------NPAFA 111
Query: 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531
D LAS + G EA R A P + + L
Sbjct: 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 20/132 (15%)
Query: 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459
P + ++L + + ++G +EEAV A+ P A L
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKAL-----EVFPEFAAAHSNL-------ASVL 53
Query: 460 IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519
+Q K +E + H + + + D + + L + A + A
Sbjct: 54 QQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105
Query: 520 HNPQYNELLEQL 531
NP + + L
Sbjct: 106 INPAFADAHSNL 117
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 32/164 (19%), Positives = 42/164 (25%), Gaps = 20/164 (12%)
Query: 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442
G + N + G + L+ L EA E P
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQA-----APERE 55
Query: 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502
EA L G+ EK I L L P++ H LA +
Sbjct: 56 EAWRSL-------GLTQAENEKDGLAIIALNHARMLD-PKDIA--VHAA-----LAVSHT 100
Query: 503 NVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSSR 546
N A LR PQY +L D + S
Sbjct: 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSE 144
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 23/198 (11%), Positives = 45/198 (22%), Gaps = 38/198 (19%)
Query: 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL 418
+ + + + + + L + + P+ A +G TQ +
Sbjct: 11 PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK 70
Query: 419 LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIG 476
A+ L A L P + + V+ + +A L
Sbjct: 71 DGLAIIALNHAR-ML----DPKDIAV---------HAALAVSHTNEHNANAALASLRAWL 116
Query: 477 NLKEPEEPK-SKAHYYDGLVV----------LASALCNVGRNAEAEKYLRLAAAHNPQYN 525
+ P+ + + E L A NP
Sbjct: 117 LSQ----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA 172
Query: 526 E-------LLEQLENNDE 536
+ L N D
Sbjct: 173 QLHASLGVLYNLSNNYDS 190
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 31/194 (15%)
Query: 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424
++ + + F + + LL AL P++ +G + A
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA 193
Query: 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIGNLKEPE 482
L A+ P + + W+ G + +E + R ++
Sbjct: 194 NLRRAVEL-----RPDDAQL---------WNKLGATLANGNRPQEALDAYNRALDIN--- 236
Query: 483 EPK-SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSD 541
P + Y +A + N+ + A K L A + + D
Sbjct: 237 -PGYVRVMYN-----MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD 290
Query: 542 -----LSSSRRRDY 550
L+ R D
Sbjct: 291 FFRMLLNVMNRPDL 304
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 8e-10
Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 20/150 (13%)
Query: 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454
A ++ +G + A + A+S P +P + +
Sbjct: 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-----APEDPFVMHEV------ 199
Query: 455 SGVACIRQEKWEEGIAHLER-IGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 513
GV + +W+ + +K + + L L + + AEA Y
Sbjct: 200 -GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258
Query: 514 LRLAAAHNPQYNE-------LLEQLENNDE 536
R A PQ + + N +
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFEN 288
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 21/158 (13%), Positives = 49/158 (31%), Gaps = 22/158 (13%)
Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
AL+ P++ + +G Q G + A ++ A+ K+ + +
Sbjct: 182 FSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI-----KAIGNEVTVDKWE 236
Query: 452 SQWS--GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 509
+ G C + +K+ E + + + L P+ + + + +G
Sbjct: 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQN--ASTYSA-----IGYIHSLMGNFEN 288
Query: 510 AEKYLRLAAAHNPQYNE-------LLEQLENNDEEFVS 540
A Y A +E + E ++
Sbjct: 289 AVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 326
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 62/223 (27%)
Query: 357 AKQLKISVENL--TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL 414
+ SV+ L +++L+ + D + L + + K+P + + L + T +
Sbjct: 8 ETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLV 67
Query: 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI---RQEKWEEGIAH 471
+ E + +P+ P + W V C K E +
Sbjct: 68 ELNKANELFYLSHKLVDL-----YPSNPVS---------WFAVGCYYLMVGHKNEHARRY 113
Query: 472 LER--------------IGN----LKEPEE------------PKS-KAHYYDGLVVLASA 500
L + G+ E ++ Y +
Sbjct: 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY-----IGLE 168
Query: 501 LCNVGRNAEAEKYLRLAAAHNPQ----YNEL---LEQLENNDE 536
+ AE++ A + P+ +E+ Q
Sbjct: 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT 211
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 18/170 (10%)
Query: 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429
+ L + ++ GD I L L + L + +++G +A+ L+ A
Sbjct: 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203
Query: 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489
EA + + E ++ + L + + AH
Sbjct: 204 SKL-----KNDNTEAFYKI-------STLYYQLGDHELSLSEVRECLKLD-QDHKRCFAH 250
Query: 490 Y-----YDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534
Y + L+ A L GR +A P E + +
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 23/170 (13%), Positives = 44/170 (25%), Gaps = 21/170 (12%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
F+ +G+ + I L+ A + DN A + Q G E ++ + +
Sbjct: 187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----D 241
Query: 439 PTEPEAIDLL-----IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 493
+ S IR ++ + + E + EP +
Sbjct: 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT----EPSIAEYTVRS 297
Query: 494 LVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
+ + EA + P E DE
Sbjct: 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 29/170 (17%), Positives = 48/170 (28%), Gaps = 19/170 (11%)
Query: 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLEC 428
++ + L K L+ G + A++ +PDN A L G + A+ L
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85
Query: 429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK-------EP 481
I A G ++Q K +E +++ E
Sbjct: 86 VIQL-----KMDFTAARLQR-------GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531
+ K+ L A G A +L EL E
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 26/137 (18%)
Query: 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS--GV 457
++ + +G+ L G L +A+ A+ G P A +
Sbjct: 23 MADVEKHLELGKKLLAAGQLADALSQFHAAV-----DGDPDNYIA---------YYRRAT 68
Query: 458 ACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516
+ K + + L ++ LK + A L G+ EAE +
Sbjct: 69 VFLAMGKSKAALPDLTKVIQLK----MDFTAARLQ-----RGHLLLKQGKLDEAEDDFKK 119
Query: 517 AAAHNPQYNELLEQLEN 533
NP NE E
Sbjct: 120 VLKSNPSENEEKEAQSQ 136
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 38/157 (24%)
Query: 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442
I + L EPDN+NAL + L + + +EA++ E A + +
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-----NENDQ 363
Query: 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502
+ E + + + K YY L V +A
Sbjct: 364 QIR---------------------------EGLEKAQRLLKQSQKRDYYKILGVKRNA-- 394
Query: 503 NVGRNAEAEK-YLRLAAAHNPQYNELLEQLENNDEEF 538
+ E K Y +LA +P + E+ + +++F
Sbjct: 395 ---KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 428
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 18/170 (10%)
Query: 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429
+ L + ++ D I L L + L + +++G +A+ L+ A
Sbjct: 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180
Query: 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489
EA + + E ++ + L + + AH
Sbjct: 181 SKL-----KSDNTEAFYKI-------STLYYQLGDHELSLSEVRECLKLD-QDHKRCFAH 227
Query: 490 Y-----YDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534
Y + L+ A L GR +A P E + +
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 28/167 (16%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILM------------GQTQLQKGLLEEAVEYL 426
+ GD E + ++ L + D+ + ++ G +A
Sbjct: 198 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257
Query: 427 ECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486
E + TEP + + + + + EK E I + ++
Sbjct: 258 ESVMK--------TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP------ 303
Query: 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533
+ L A A EA + A HN ++ E LE
Sbjct: 304 --DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 21/171 (12%)
Query: 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLEC 428
++ + L K L+ G + A++ +PDN A L G + A+ L
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK--- 485
I+ A G ++Q K +E +++ P E +
Sbjct: 63 VIAL-----KMDFTAARLQR-------GHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKE 109
Query: 486 -----SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531
KA L A + A +L EL E
Sbjct: 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 26/135 (19%)
Query: 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS--GVAC 459
++ + +G+ L G L +A+ A+ G P A +
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAV-----DGDPDNYIA---------YYRRATVF 47
Query: 460 IRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518
+ K + + L ++ LK + A L G+ EAE +
Sbjct: 48 LAMGKSKAALPDLTKVIALK----MDFTAARLQ-----RGHLLLKQGKLDEAEDDFKKVL 98
Query: 519 AHNPQYNELLEQLEN 533
NP E E
Sbjct: 99 KSNPSEQEEKEAESQ 113
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 33/142 (23%), Positives = 46/142 (32%), Gaps = 20/142 (14%)
Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
Q + G +LQ+G L AV E A+ + P EA L
Sbjct: 53 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEAWQYL--- 104
Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511
G E+ I+ L R LK P+ A LA + N +A
Sbjct: 105 ----GTTQAENEQELLAISALRRCLELK-PDNQ--TALMA-----LAVSFTNESLQRQAC 152
Query: 512 KYLRLAAAHNPQYNELLEQLEN 533
+ LR + P Y L+ E
Sbjct: 153 EILRDWLRYTPAYAHLVTPAEE 174
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 40/182 (21%)
Query: 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436
++ L +GD + L + A+ ++P ++ A +G TQ + A+ L +
Sbjct: 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL---- 127
Query: 437 GHPTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLER-----------IGNLKEPEE 483
P A V+ + + L + +E
Sbjct: 128 -KPDNQTA---------LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177
Query: 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE---------LLEQLENN 534
L +L + E ++ A +P + L
Sbjct: 178 GAGLGPSKRIL----GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 233
Query: 535 DE 536
D+
Sbjct: 234 DK 235
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 25/142 (17%), Positives = 40/142 (28%), Gaps = 9/142 (6%)
Query: 389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS---KLFLAGHPTEPEAI 445
I L+ L +PDN AL+ + + + L +A E L + P E A
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 177
Query: 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505
+ S+ + + + E L P L G
Sbjct: 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQC-----GLGVLFNLSG 231
Query: 506 RNAEAEKYLRLAAAHNPQYNEL 527
+A A + P L
Sbjct: 232 EYDKAVDCFTAALSVRPNDYLL 253
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 28/154 (18%)
Query: 378 KFLSKGDKERPIPLLQLALNKEPDNINALIL--MGQTQLQKGLLEEAVEYLECAISKLFL 435
LS L A+ +P +I+ + +G G ++AV+ A+S
Sbjct: 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--- 246
Query: 436 AGHPTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYD 492
P + W+ G + EE +A R L+ P ++ Y
Sbjct: 247 --RPNDYLL---------WNKLGATLANGNQSEEAVAAYRRALELQ----PGYIRSRYN- 290
Query: 493 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526
L + N+G + EA ++ A +
Sbjct: 291 ----LGISCINLGAHREAVEHFLEALNMQRKSRG 320
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 29/158 (18%)
Query: 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454
A + P+N+ I + ++G E+ + K PT PE
Sbjct: 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-----FPTLPEVPTFF------ 384
Query: 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPK---------SKAHYYDGLVVLASALCNVG 505
+ ++ I + L+ + K KA +
Sbjct: 385 -AEILTDRGDFDTAIKQYDIAKRLE-EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442
Query: 506 RNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
+ A K L A +P+ + L Q+E DE
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 22/157 (14%)
Query: 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441
+G K P + +G + A++ + A +
Sbjct: 357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL-----EEVQ 411
Query: 442 PEA---------IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 492
+ ++ + +EK+ I L + L P+S+
Sbjct: 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD----PRSEQAKIG 467
Query: 493 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529
LA + + EA + +A +E L+
Sbjct: 468 ----LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 16/181 (8%)
Query: 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK 416
K L S +L F + + I Q A+ +P+ + +
Sbjct: 13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST 72
Query: 417 GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476
G LE+ +E+ A+ P +A+ A + + + L +
Sbjct: 73 GDLEKVIEFTTKALEI-----KPDHSKALLRR-------ASANESLGNFTDAMFDLSVLS 120
Query: 477 NLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDE 536
+ + + L A + N K + P L D
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKV----LNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 537 E 537
Sbjct: 177 H 177
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 21/165 (12%)
Query: 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL 419
L+ L+A + S + + + AL G K L
Sbjct: 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259
Query: 420 EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479
+A L+ +I+ P + + + +E +E ++ +L
Sbjct: 260 LDAQVLLQESINL--------HPTPNSYIFL-----ALTLADKENSQEFFKFFQKAVDLN 306
Query: 480 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524
PE P +Y+ + A++ + A + NP+
Sbjct: 307 -PEYP--PTYYH-----RGQMYFILQDYKNAKEDFQKAQSLNPEN 343
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434
L + I LL A +P + A I + Q +LQ ++EA+E E +
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--- 490
Query: 435 LAGHPTEPEAIDLL 448
LA T E +
Sbjct: 491 LA--RTMDEKLQAT 502
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-09
Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 25/161 (15%)
Query: 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434
L+++++ D + ++ AL +P N A ++ + + ++A E A+S
Sbjct: 14 LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-- 71
Query: 435 LAGHPTEPEAIDLLIVASQWS--GVA-CIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHY 490
P E + G C R + E +A+ ++ L +P P A+
Sbjct: 72 ---KPDSAEI---------NNNYGWFLCGRLNRPAESMAYFDKA--LADPTYPTPYIANL 117
Query: 491 YDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531
G+ AE YL+ + A PQ+ ++L
Sbjct: 118 N-----KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL 153
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-06
Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 31/155 (20%)
Query: 395 ALNKEPDNINALILMGQT-QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453
AL+ +PD+ G + E++ Y + A++ +PT A
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPT---YPTPYIA--------- 115
Query: 454 WS--GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511
G+ +Q ++ A+L+R + P+ P A LA G+ +A+
Sbjct: 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPP--AFKE-----LARTKMLAGQLGDAD 167
Query: 512 KYLRLAAAHNPQYNE--------LLEQLENNDEEF 538
Y + + + + L N +
Sbjct: 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 29/182 (15%), Positives = 63/182 (34%), Gaps = 22/182 (12%)
Query: 351 TTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMG 410
++P K K E I L + +L +G+ E+ L+ AL +P + +A +
Sbjct: 21 MGDQNPLKTDKGRDEA--RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA 78
Query: 411 QTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIA 470
+ + A E A++ ++ G Q+++EE
Sbjct: 79 VVFQTEMEPKLADEEYRKALAS-----DSRNARVLNNY-------GGFLYEQKRYEEAYQ 126
Query: 471 HLERIGNLKEPEEPK-SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529
L ++ P+ S+ L + + A+A++Y + N +
Sbjct: 127 RLLEA--SQDTLYPERSRVFEN-----LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179
Query: 530 QL 531
++
Sbjct: 180 EM 181
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 28/151 (18%)
Query: 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454
AL + N L G ++ EEA + L A +P +
Sbjct: 97 ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL---YPERSRV---------F 144
Query: 455 S--GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 512
G+ ++ +K + + E+ L +P +A L A +
Sbjct: 145 ENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPS--VALE-----MADLLYKEREYVPARQ 196
Query: 513 YLRLAAAHNPQYNE------LLEQLENNDEE 537
Y L A Q L ++ + +
Sbjct: 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 15/134 (11%), Positives = 33/134 (24%), Gaps = 20/134 (14%)
Query: 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459
P+ +G LQ +A EY E ++ + +P +
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----NRNQPSVALEM-------ADLL 185
Query: 460 IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519
++ ++ + + ++ G+ + A Y
Sbjct: 186 YKEREYVPARQYYDLFAQGG----GQNARSLLLGIRLAKVF----EDRDTAASYGLQLKR 237
Query: 520 HNPQYNELLEQLEN 533
P E E
Sbjct: 238 LYPGSLEYQEFQAE 251
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 13/177 (7%), Positives = 41/177 (23%), Gaps = 24/177 (13%)
Query: 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYL 426
+ + + I + K+ ++ + + A + +
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 427 ECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486
E SK+ + + G +++ + I + + +
Sbjct: 61 ETYFSKVNA--TKAKSADFEYY-------GKILMKKGQDSLAIQQYQAAVDRD-TT--RL 108
Query: 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
+ + S N G A +Y+ + + +
Sbjct: 109 DMYGQ-----IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
F +KG+ I ++ + + +GQ +A +
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-----K 172
Query: 439 PTEPEAIDLLIVASQWSGVACIRQ---EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 495
P W A Q K + E++ + P K K +
Sbjct: 173 PNIYIGY-------LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Query: 496 VLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533
+A +A+ + A +P + ++ L+
Sbjct: 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKM 263
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 13/130 (10%)
Query: 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454
A + +G +Q G + A EYL+ + + +P ++ L
Sbjct: 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQYDPLLLNEL------ 481
Query: 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYL 514
GV + + I H + L + ++ + L A + A L
Sbjct: 482 -GVVAFNKSDMQTAINHFQNALLLV-KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539
Query: 515 RLAAAHNPQY 524
+
Sbjct: 540 NQGLLLSTND 549
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 6e-08
Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 17/144 (11%)
Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS--KLFLAGHPTEPEAIDLLI 449
LQ + + L +G K ++ A+ + + A+ K + L
Sbjct: 464 LQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL- 522
Query: 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 509
G A + + ++ I L + L + H +A +
Sbjct: 523 ------GHAYRKLKMYDAAIDALNQGLLLS-TNDA--NVHTA-----IALVYLHKKIPGL 568
Query: 510 AEKYLRLAAAHNPQYNELLEQLEN 533
A +L + A +P + L+
Sbjct: 569 AITHLHESLAISPNEIMASDLLKR 592
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 18/172 (10%), Positives = 47/172 (27%), Gaps = 20/172 (11%)
Query: 353 LESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT 412
+ + + L L + S D+ R ++N + + L+ T
Sbjct: 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314
Query: 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHL 472
+ + + + P + L + + +
Sbjct: 315 LFVRSRFIDVLAITTKILEI-----DPYNLDVYPLH-------LASLHESGEKNKLYLIS 362
Query: 473 ERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524
+ + PE+ + V + +EA +Y ++ +PQ+
Sbjct: 363 NDLVDRH-PEKA--VTWL-----AVGIYYLCVNKISEARRYFSKSSTMDPQF 406
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 22/148 (14%)
Query: 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454
L+ + +A L Q G A L +
Sbjct: 110 VLDITGNPNDAFWL-AQVYCCTGDYARAKCLLTKEDL-------------YNRSSACRYL 155
Query: 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV--------GR 506
+ ++ W+ + L ++ E+ +K DG + L +++C +
Sbjct: 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215
Query: 507 NAEAEKYLRLAAAHNPQYNELLEQLENN 534
A++ + A + + E +QL +N
Sbjct: 216 FDRAKECYKEALMVDAKCYEAFDQLVSN 243
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 20/171 (11%), Positives = 40/171 (23%), Gaps = 20/171 (11%)
Query: 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS------ 431
F + + + E L GQ + A E + A+
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLEAS---MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234
Query: 432 -------KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE- 483
L E + + L ++ A + + + L+ E+
Sbjct: 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294
Query: 484 ---PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531
D L+ A L R + +P ++
Sbjct: 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 2e-08
Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 27/198 (13%)
Query: 344 EEIDTLETTLESPAKQLKISVENLTPKELIA--LSVKFLSKGDKERPIPLLQLALNKEPD 401
+ + ++ + ++++ +N K L+A L ++ L++ AL K P
Sbjct: 186 DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245
Query: 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA------------IDLLI 449
+ L + +K ++A+E L+ A+ P ++
Sbjct: 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEY-----IPNNAYLHCQIGCCYRAKVFQVMN 300
Query: 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 509
+ E +AHL++ + + + +LAS + E
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEAND--------NLFRVCSILASLHALADQYEE 352
Query: 510 AEKYLRLAAAHNPQYNEL 527
AE Y + +
Sbjct: 353 AEYYFQKEFSKELTPVAK 370
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 19/157 (12%)
Query: 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ---KGLLEEAVEYLECAISKLFLA 436
ER + AL K+P N + + + A++ L AI
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL---- 204
Query: 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 496
+P LL + E+ EG +E P
Sbjct: 205 -NPDNQYLKVLLALKLHKMR---EEGEEEGEGEKLVEEALEKA-PGVTD--VLRS----- 252
Query: 497 LASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533
A +A + L+ A + P L Q+
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 26/184 (14%), Positives = 56/184 (30%), Gaps = 38/184 (20%)
Query: 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG----------------- 417
+ + K + ++ I LL+ AL P+N +G K
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Query: 418 --LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475
L+ AV +L+ A + +L +++EE + ++
Sbjct: 313 LELIGHAVAHLKKADEA-----NDNLFRVCSIL-------ASLHALADQYEEAEYYFQKE 360
Query: 476 GNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE---LLEQLE 532
+ + K H G L + +A + N + E + ++L+
Sbjct: 361 FSKELTPVAKQLLHLRYGNF----QLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Query: 533 NNDE 536
+
Sbjct: 417 KIAK 420
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 7e-04
Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 9/143 (6%)
Query: 393 QLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452
+ L+ + KG E A+E L A +L H + E L+
Sbjct: 41 RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAE-ELIQQEHADQAEIRSLVT--- 96
Query: 453 QWSGVACI--RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL--CNVGRNA 508
W A + + + +++++ ++ E + + C +N
Sbjct: 97 -WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNE 155
Query: 509 EAEKYLRLAAAHNPQYNELLEQL 531
A+ A P+ E L
Sbjct: 156 RAKVCFEKALEKKPKNPEFTSGL 178
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-08
Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 33/187 (17%)
Query: 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430
+L+ + L +G+ + + ++Q ++ + + L+ E A E L
Sbjct: 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI- 66
Query: 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHY 490
P S + + +Q + LE +E +
Sbjct: 67 -----------PLEYQDNSYKSLIAKLELHQQAAESPELKRLE--------QELAANPDN 107
Query: 491 YDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN---------ELLEQLENNDEEFVSD 541
++ LA VGR+ EA + L N ++L L +
Sbjct: 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI---- 163
Query: 542 LSSSRRR 548
S RR+
Sbjct: 164 ASKYRRQ 170
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-08
Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 23/144 (15%)
Query: 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451
+ + D + L + Q Q G E+A + + L
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGL--- 61
Query: 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511
G +++ I + EP+ H A L G AEAE
Sbjct: 62 ----GACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFH-------AAECLLQXGELAEAE 109
Query: 512 KYLRLA---AAHNPQYNELLEQLE 532
L LA A+ P++ EL ++
Sbjct: 110 SGLFLAQELIANXPEFXELSTRVS 133
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 26/169 (15%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
+ ++ A +P+NI I + ++ ++ A K
Sbjct: 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-----F 368
Query: 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV-- 496
P PE + + +++ + + L+ + + +V
Sbjct: 369 PEAPEVPNFF-------AEILTDKNDFDKALKQYDLAIELE-NKLD--GIYVGIAPLVGK 418
Query: 497 --LASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
L + V EA L A+ +P+ + + Q E+ DE
Sbjct: 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 15/152 (9%)
Query: 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441
+ + L A K P+ + K ++A++ + AI
Sbjct: 351 ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL-----ENKL 405
Query: 442 PEAID--LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 499
+V E + E LE+ L P+S+ LA
Sbjct: 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD----PRSEQAKIG----LAQ 457
Query: 500 ALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531
EA +A E L+ +
Sbjct: 458 MKLQQEDIDEAITLFEESADLARTMEEKLQAI 489
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 20/146 (13%), Positives = 37/146 (25%), Gaps = 20/146 (13%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
+ D AL + +N + GQ ++A + + A
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-----D 334
Query: 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 498
P L R+ K+++ PE + + A
Sbjct: 335 PENIFPYIQL-------ACLAYRENKFDDCETLFSEAKRKF-PE--APEVPNF-----FA 379
Query: 499 SALCNVGRNAEAEKYLRLAAAHNPQY 524
L + +A K LA +
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKL 405
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 18/150 (12%), Positives = 37/150 (24%), Gaps = 21/150 (14%)
Query: 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441
E + + +L G + K A E ++ AI
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------F 267
Query: 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 501
P + + + + E + ++ L +Y+
Sbjct: 268 PRVNSYI-----YMALIMADRNDSTEYYNYFDKALKLD-SNNS--SVYYH-----RGQMN 314
Query: 502 CNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531
+ +A K A +P+ QL
Sbjct: 315 FILQNYDQAGKDFDKAKELDPENIFPYIQL 344
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440
+ + LL+ A +P + A I + Q +LQ+ ++EA+ E + LA T
Sbjct: 427 TVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD---LA--RT 481
Query: 441 EPEAIDLLIVA 451
E + + A
Sbjct: 482 MEEKLQAITFA 492
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 31/164 (18%)
Query: 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441
+ E+ + + P+ L G+ K AV+ I + P +
Sbjct: 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APED 172
Query: 442 PEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGLVVLA 498
+S A + + E IA + P +A+ A
Sbjct: 173 ARG---------YSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIR-----KA 214
Query: 499 SALCNVGRNAEAEKYLRLAAAHNPQYNEL-----LEQLENNDEE 537
+A V A A + L A + + N ++QL +
Sbjct: 215 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 23/148 (15%), Positives = 39/148 (26%), Gaps = 22/148 (14%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
F + I A D I L + +KG E A+ L A+ +
Sbjct: 15 FYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAISTLNDAVEQ-----G 68
Query: 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 498
++ + R + L++ KS + A
Sbjct: 69 REMRADYKVI-------SKSFARIGNAYHKLGDLKKTIEYY----QKSLTEHR-----TA 112
Query: 499 SALCNVGRNAEAEKYLRLAAAHNPQYNE 526
L + + K A NP+ E
Sbjct: 113 DILTKLRNAEKELKKAEAEAYVNPEKAE 140
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-07
Identities = 22/125 (17%), Positives = 35/125 (28%), Gaps = 24/125 (19%)
Query: 419 LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478
++ E LE LA L G E+++ + HL +
Sbjct: 1 MQAITERLEAM-----LAQGTDNMLLRFTL-------GKTYAEHEQFDAALPHLRAALDF 48
Query: 479 KEPEEPK-SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 537
P S A + L L G A A + A + Q+ +
Sbjct: 49 D----PTYSVAWKW-----LGKTLQGQGDRAGARQAWESGLAAAQSRGDQ--QVVKELQV 97
Query: 538 FVSDL 542
F+ L
Sbjct: 98 FLRRL 102
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-05
Identities = 20/125 (16%), Positives = 33/125 (26%), Gaps = 18/125 (14%)
Query: 389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448
L+ L + DN+ +G+T + + A+ +L A+ PT A L
Sbjct: 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWL 59
Query: 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA 508
G Q E + L L + R
Sbjct: 60 -------GKTLQGQGDRAGARQAWESGLAA-AQSRGDQQVVK-----ELQVFLRRLARED 106
Query: 509 EAEKY 513
E +
Sbjct: 107 ALEHH 111
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 6e-07
Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 19/156 (12%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
F S+ + E + LQ + P N L+G+ L + ++ A+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL------ 73
Query: 439 PTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK-EPEEPKSKAHYYDGLVVL 497
E +L + Q + A +++ L + E A L
Sbjct: 74 --RGENAELYAALAT-VLYYQASQHMTAQTRAMIDKA--LALDSNEI--TALML-----L 121
Query: 498 ASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533
AS A+A + + N + +E+
Sbjct: 122 ASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 3e-06
Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS--GV 457
N L G Q G E+++ E AI P E + W G
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEESKY---------WLMKGK 48
Query: 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517
A E++EE + + N+ +E A AL + +
Sbjct: 49 ALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA-----KADALRYIEGKEVEAEIAEAR 102
Query: 518 AAHNPQYN 525
A ++
Sbjct: 103 AKLEHHHH 110
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 23/161 (14%)
Query: 367 LTPKELIALSVK---FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAV 423
LTP++++A++ + +R +P+L A P + A+ + ++ +
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLL 296
Query: 424 EYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483
L A P + AI G E + + L + L P++
Sbjct: 297 PVLCQAHGL-----TPQQVVAIASN-------GGGKQALETVQRLLPVLCQAHGLT-PQQ 343
Query: 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524
A + L A P+
Sbjct: 344 V--VAIASHDG-----GKQALETVQRLLPVLCQAHGLTPEQ 377
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 27/181 (14%), Positives = 50/181 (27%), Gaps = 30/181 (16%)
Query: 366 NLTPKELIALSVK---FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEA 422
NLTP++++A++ + +R +P+L A P + A+ + ++
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 125
Query: 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482
+ L A P + AI E + + L + L PE
Sbjct: 126 LPVLCQAH-----GLTPEQVVAIASH-------DGGKQALETVQALLPVLCQAHGLT-PE 172
Query: 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENND 535
+ + L A PQ + LE
Sbjct: 173 -------QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 225
Query: 536 E 536
Sbjct: 226 R 226
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 28/180 (15%), Positives = 49/180 (27%), Gaps = 30/180 (16%)
Query: 367 LTPKELIALSVKFLSKGDKERP---IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAV 423
LTP++++A++ K E +P+L A P + A+ + ++ +
Sbjct: 305 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLL 364
Query: 424 EYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483
L A P + AI Q E + + L + L PE
Sbjct: 365 PVLCQAH-----GLTPEQVVAIASNGGGKQ-------ALETVQRLLPVLCQAHGLT-PE- 410
Query: 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
+ + L A PQ LE+
Sbjct: 411 ------QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVA 464
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 25/194 (12%), Positives = 48/194 (24%), Gaps = 30/194 (15%)
Query: 353 LESPAKQLKISVENLTPKELIALS---VKFLSKGDKERPIPLLQLALNKEPDNINALILM 409
L + A +L+ L +L+ ++ + L LN P+ + A+
Sbjct: 19 LLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASH 78
Query: 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469
+ ++ + L A P + AI E + +
Sbjct: 79 DGGKQALETVQRLLPVLCQAHGL-----TPQQVVAIASH-------DGGKQALETVQRLL 126
Query: 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE--- 526
L + L PE + + L A P+
Sbjct: 127 PVLCQAHGLT-PE-------QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIA 178
Query: 527 ----LLEQLENNDE 536
+ LE
Sbjct: 179 SNGGGKQALETVQR 192
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 23/159 (14%)
Query: 367 LTPKELIALSVK---FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAV 423
LTP++++A++ + +R +P+L A P+ + A+ G + ++ +
Sbjct: 339 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLL 398
Query: 424 EYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483
L A P + AI E + + L + L P++
Sbjct: 399 PVLCQAHGL-----TPEQVVAIASH-------DGGKQALETVQRLLPVLCQAHGLT-PQQ 445
Query: 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522
A + A A
Sbjct: 446 V--VAIAS-----NGGGRPALESIVAQLSRPDPALAALT 477
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 30/180 (16%)
Query: 367 LTPKELIALSVKFLSKGDKERP---IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAV 423
LTP++++A++ K E +P+L A P + A+ G + ++ +
Sbjct: 169 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 228
Query: 424 EYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483
L A P + AI G E + + L + L P+
Sbjct: 229 PVLCQAHGL-----TPQQVVAIASN-------GGGKQALETVQRLLPVLCQAHGLT-PQ- 274
Query: 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
+ + + L A PQ + LE
Sbjct: 275 ------QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 328
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-06
Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 12/160 (7%)
Query: 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442
++ P A+ +I + E +E E + K+ +
Sbjct: 278 EVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV 337
Query: 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502
+ ++ A C+ + WE + + ++I P + + L
Sbjct: 338 YMLHMMYQAMG----VCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM 393
Query: 503 NVGRNAEAEKYLRLAAA--------HNPQYNELLEQLENN 534
+ A EK L+ A A +P +E+ +++E++
Sbjct: 394 GLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIESH 433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 26/174 (14%), Positives = 48/174 (27%), Gaps = 35/174 (20%)
Query: 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS-K 432
+ GD E+ A+ + ++ I LE A+ + + A+
Sbjct: 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87
Query: 433 LFLAGHPTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAH 489
+ A + G + +E ++E E+ +
Sbjct: 88 ------SSAATA---------YYGAGNVYVVKEMYKEAKDMFEKALRAG----MENGDLF 128
Query: 490 YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
Y L + L + + A YL+ A N E L DE
Sbjct: 129 YM-----LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 7e-06
Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 26/135 (19%)
Query: 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454
AL +N + ++G ++ + A+ YL+ A+ + + EA
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-----NENDTEA---------R 162
Query: 455 S--GVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGLVVLASALCNVGRNAEAE 511
G+ + +E ++ + P + A Y +A
Sbjct: 163 FQFGMCLANEGMLDEALSQFAAVTEQD----PGHADAFYN-----AGVTYAYKENREKAL 213
Query: 512 KYLRLAAAHNPQYNE 526
+ L A P +
Sbjct: 214 EMLDKAIDIQPDHML 228
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 22/137 (16%)
Query: 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450
+L + + L G GL A A++ P PE + L
Sbjct: 31 ILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDMPEVFNYL-- 83
Query: 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGLVVLASALCNVGRNAE 509
G+ + ++ + + L P + AH AL GR+
Sbjct: 84 -----GIYLTQAGNFDAAYEAFDSVLELD----PTYNYAHLN-----RGIALYYGGRDKL 129
Query: 510 AEKYLRLAAAHNPQYNE 526
A+ L +P
Sbjct: 130 AQDDLLAFYQDDPNDPF 146
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 29/178 (16%), Positives = 51/178 (28%), Gaps = 41/178 (23%)
Query: 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK----------LFLAGHPTEP-E 443
L +P A + G G + A + L L+LA + +
Sbjct: 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ 162
Query: 444 AIDLLIVASQ--------WSGVACI-----RQEKWEEGIAHLERIGNLKEPEEPK-SKAH 489
A ++L + W+ V Q E A +L S+ +
Sbjct: 163 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA----EHLSETN 218
Query: 490 YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDEEFVS 540
+Y L ++G A +LA A+N L L + ++
Sbjct: 219 FY-----LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAE 271
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 8e-06
Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 35/169 (20%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS-KLFLAG 437
G + + LL+ + + +++ + +G ++ G ++ E LE +++
Sbjct: 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----- 72
Query: 438 HPTEPEAIDLLIVASQWS--GVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGL 494
P + + G+ ++ +K++ + L ++ P +
Sbjct: 73 -PDNVKV---------ATVLGLTYVQVQKYDLAVPLLIKVAEAN----PINFNVRFR--- 115
Query: 495 VVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQLENNDE 536
L AL N+GR EA ++A P + EQ+ ++E
Sbjct: 116 --LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 4e-05
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 26/137 (18%)
Query: 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454
+L PDN+ ++G T +Q + AV L +P
Sbjct: 68 SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINFNV---------R 113
Query: 455 S--GVACIRQEKWEEGIAHLERIGNLKEPEEPK-SKAHYYDGLVVLASALCNVGRNAEAE 511
GVA +++E I + L+ P K H +A + +GR+ EA
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLR----PNEGKVHRA-----IAFSYEQMGRHEEAL 164
Query: 512 KYLRLAAAHNPQYNELL 528
+ + A + + L
Sbjct: 165 PHFKKANELDEGASVEL 181
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 14/150 (9%)
Query: 339 AARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNK 398
+ + + I + + ++ + + F +KG E +
Sbjct: 8 NESISTAVIDAINSGATLKDINAIPDDMMD--DIYSYAYDFYNKGRIEEAEVFFRFLCIY 65
Query: 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458
+ N++ ++ + K ++A + A + + + G
Sbjct: 66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKNDYTPVFHT-------GQC 113
Query: 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488
+R + + E + E+ K KA
Sbjct: 114 QLRLKAPLKAKECFELVIQHSNDEKLKIKA 143
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 30/199 (15%)
Query: 344 EEIDTLETTLESP-AKQLKISVENLTPKELIALS-----VKFLSKGDKERP---IPLLQL 394
+ +++L L P ++++ +++ + P L+ +L GD + LL
Sbjct: 165 DLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGE 224
Query: 395 ALNKEPDNINA----LILMGQTQLQKGLLEEAVEYLECAISKLF-LAGHPTEPEAIDLLI 449
+ P+ A ++ Q L E+ + L I + L +
Sbjct: 225 IVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIK- 283
Query: 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 509
V+ + + K +E + +L E + L G N E
Sbjct: 284 ------AVSALVKGKTDESYQAINTGIDL----EMSWLNYVL-----LGKVYEMKGMNRE 328
Query: 510 AEKYLRLAAAHNPQYNELL 528
A A P N L
Sbjct: 329 AADAYLTAFNLRPGANTLY 347
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 35/209 (16%), Positives = 70/209 (33%), Gaps = 49/209 (23%)
Query: 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLE 427
+ + L V+ + G + + L + AL + P + AL + +TQL+ GL+ A+E +
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 428 CAIS-----------------KLFLAGHPTEP------EAIDLLIVASQ--------WS- 455
++ L+ E +A+ +L A +
Sbjct: 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123
Query: 456 -GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYL 514
G+ + ++ A L++ L+ + LA ++GR EA
Sbjct: 124 RGLVYALLGERDKAEASLKQALALE----DTPEIRSA-----LAELYLSMGRLDEALAQY 174
Query: 515 RLAAAHNPQYNE-------LLEQLENNDE 536
A P+ + L +E
Sbjct: 175 AKALEQAPKDLDLRVRYASALLLKGKAEE 203
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 47/261 (18%), Positives = 77/261 (29%), Gaps = 60/261 (22%)
Query: 339 AARKPEEIDTLETTLESPAKQLKISVENLTPKELIALS------VKFLSKGDKERPIPLL 392
AA+K E E K LK S P A S V F + E+
Sbjct: 3 AAQKISEAHEHIAKAE---KYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAY 59
Query: 393 QLAL------NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE----- 441
A G + EAV+Y+E A G P
Sbjct: 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119
Query: 442 ------------PEAIDLLIVASQWS----------------GVACIRQEKWEEGIAHLE 473
+A+ L A+ +RQ+K++E A L+
Sbjct: 120 DRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ 179
Query: 474 RIGNL-KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA-----AHNPQY--- 524
+ ++ KE E + V++ A+K +R + + +
Sbjct: 180 KEKSMYKEMENYPTCYKKCIAQVLVQLHR---ADYVAAQKCVRESYSIPGFSGSEDCAAL 236
Query: 525 NELLEQLENNDEEFVSDLSSS 545
+LL+ + DEE + + S
Sbjct: 237 EDLLQAYDEQDEEQLLRVCRS 257
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 23/175 (13%)
Query: 353 LESPAKQLKISVENLTPKELIALSVKFLSK---GDKERPIPLLQLALNKEPDNINALILM 409
+ + L + NLTP +++A++ K +R +P+L A P + A+
Sbjct: 173 VHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 232
Query: 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469
+ ++ + L A L P + AI I Q E + +
Sbjct: 233 DGGKQALETMQRLLPVLCQAHG---LP--PDQVVAIASNIGGKQ-------ALETVQRLL 280
Query: 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524
L + L P++ A G + L A P
Sbjct: 281 PVLCQAHGLT-PDQV--VAIASHGG-----GKQALETVQRLLPVLCQAHGLTPDQ 327
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 5e-05
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 43/109 (39%)
Query: 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 500
EPE+I +W +E+ + + L+ + E +E + KA
Sbjct: 83 EPESI------RKW-------REEQRKRLQELDAASKVME-QEWREKAK----------- 117
Query: 501 LCNVGRNAEAEKYLRLAAAHNPQYNELLE--QLEN--NDEEFVSDLSSS 545
+ E++ + + +E +E ++ N D+ F +
Sbjct: 118 -------KDLEEWNQ-------RQSEQVEKNKINNRIADKAFYQQPDAD 152
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-05
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 15/96 (15%)
Query: 383 GDKERPIPLLQLAL---NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439
G + + +P + A+ + D + +G T G +A L + + P
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FP 58
Query: 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475
+ ++E+G+ L +I
Sbjct: 59 NHQALRVFY-------AMVLYNLGRYEQGVELLLKI 87
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 9e-04
Identities = 23/113 (20%), Positives = 32/113 (28%), Gaps = 17/113 (15%)
Query: 417 GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476
GL +AV Y E AI L E L G ++ + A L
Sbjct: 4 GLEAQAVPYYEKAI-ASGLQ-GKDLAECYLGL-------GSTFRTLGEYRKAEAVLANGV 54
Query: 477 NLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529
P +A A L N+GR + + L A +
Sbjct: 55 KQF----PNHQALRVF----YAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 1e-04
Identities = 19/126 (15%), Positives = 33/126 (26%), Gaps = 3/126 (2%)
Query: 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469
Q QL G +EA A+ + A ++E +
Sbjct: 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 77
Query: 470 AHLER-IGNLKEPEEPKSKAH--YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526
++ + E + + A AL +GR AEA + +
Sbjct: 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137
Query: 527 LLEQLE 532
E
Sbjct: 138 ETPGKE 143
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 23/155 (14%), Positives = 39/155 (25%), Gaps = 22/155 (14%)
Query: 372 LIALSVKFLSKGDKERPIPLLQLAL------NKEPDNINALILMGQTQLQKGLLEEAVEY 425
A +V L G + L L G+ G V +
Sbjct: 11 ASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAF 70
Query: 426 LECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLER---IGNLKEPE 482
+ AI + T L G A + + + + + + K
Sbjct: 71 FQAAI-QAGTEDLRTLSAIYSQL-------GNAYFYLGDYNKAMQYHKHDLTL--AKSMN 120
Query: 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517
+ +A L + L +GR EA
Sbjct: 121 DRLGEAKSSGN---LGNTLKVMGRFDEAAICCERH 152
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE-------LLEQ 530
+++PE+P Y LA + A +P Y L E+
Sbjct: 1 MEDPEDPF--TRYA-----LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER 53
Query: 531 LENNDE 536
L+ D+
Sbjct: 54 LDRTDD 59
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 13/119 (10%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
+ + ++N++ A G Q + A++ L+ A+ +L
Sbjct: 47 YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL----R 102
Query: 439 PTEPEAIDLLIVASQWS--------GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489
+ +L + + ++E+W++ L ++K E SK
Sbjct: 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK-SEPRHSKID 160
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 8e-04
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 10/114 (8%)
Query: 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE 463
NA + G A +L F H + + ++ A I
Sbjct: 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI--------ARAQILLG 267
Query: 464 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517
++E LE + + + + L++L GR ++A++ L A
Sbjct: 268 EFEPAEIVLEEL--NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 550 | |||
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.74 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.69 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.69 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.68 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.67 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.64 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.62 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.62 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.58 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.57 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.56 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.55 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.54 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.54 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.54 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.53 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.53 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.53 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.52 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.51 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.51 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.5 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.5 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.49 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.49 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.49 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.47 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.47 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.46 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.45 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.45 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.45 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.44 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.44 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.44 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.44 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.44 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.42 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.42 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.42 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.41 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.41 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.41 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.41 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.38 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.38 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.38 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.38 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.37 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.36 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.36 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.35 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.35 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.34 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.34 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.33 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.33 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.33 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.33 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.32 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.32 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.32 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.32 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.32 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.32 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.32 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.31 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.29 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.29 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.28 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.27 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.26 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.26 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.25 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.24 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.24 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.23 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.23 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.23 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.23 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.22 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.2 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.2 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.19 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.19 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.18 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.17 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.14 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.14 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.13 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.13 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.12 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.11 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.11 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.11 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.11 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.11 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.1 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.08 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.06 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.0 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.0 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.0 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.97 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.96 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.94 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.9 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.9 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.88 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.88 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.87 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.86 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.84 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.82 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.79 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.78 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.76 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.76 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.76 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.76 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.74 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.73 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.72 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.72 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.7 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.69 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.54 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.49 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.41 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.37 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.35 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.34 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.33 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.32 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.32 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.25 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.11 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.06 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.0 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.97 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.83 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.79 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.46 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.15 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.15 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.13 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.09 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.07 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.06 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.71 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.7 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.69 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.62 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.97 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.87 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.37 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.87 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.59 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.54 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.99 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.99 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.87 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.05 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 92.72 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 92.6 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 92.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.44 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.34 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 92.14 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.67 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 90.72 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.39 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.68 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.45 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.99 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.28 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 87.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 85.32 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 83.43 |
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=183.42 Aligned_cols=148 Identities=22% Similarity=0.167 Sum_probs=140.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+.++|..+..+|++++|+++|+++++.+|++..+++++|.+|.+.|++++|+++|++++++ +|++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~----- 77 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFA----- 77 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 56788899999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.+++++|.++.++|++++|++.|+++++++ |++. .++.++|.+|.++|++++|++.|+++++++|++.++
T Consensus 78 --~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~-------~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 78 --DAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFA-------DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 388999999999999999999999999998 9887 999999999999999999999999999999999999
Q ss_pred HHHHHhhH
Q 008887 528 LEQLENND 535 (550)
Q Consensus 528 ~~~l~~~~ 535 (550)
+.++....
T Consensus 148 ~~~L~~~l 155 (723)
T 4gyw_A 148 YCNLAHCL 155 (723)
T ss_dssp HHHHHHHH
T ss_pred HhhhhhHH
Confidence 88877643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-18 Score=154.26 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=127.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
.+|..+..+|++++|++.+++++..+|+++.+++.+|.+|.+.|++++|+++|++++++ +|+++ .+++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~~-------~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERDP-------KAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHH
Confidence 36777888899999999999999999999999999999999999999999999999999 88887 3889
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCcHHHHHHHH
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY-LRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~-l~~al~~~p~~~~~~~~l~ 532 (550)
++|.++...|++++|+..|+++++++ |+++ .++..+|.+|.+.|++++|.+. ++++++++|+++.++...+
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~ 141 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELN-PTQK-------DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKE 141 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 99999999999999999999999998 9888 9999999999999999887765 5899999999999887776
Q ss_pred hhH
Q 008887 533 NND 535 (550)
Q Consensus 533 ~~~ 535 (550)
++.
T Consensus 142 ~ll 144 (150)
T 4ga2_A 142 QLL 144 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=151.13 Aligned_cols=146 Identities=20% Similarity=0.255 Sum_probs=132.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|++. .
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~-~--- 74 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRYL-G--- 74 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-H---
Confidence 56788899999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQ-----------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 448 l~~a~~~lg~~~~~~-----------g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
+++++|.++... |++++|++.|+++++.+ |++. .++..+|.+|...|++++|++.|++
T Consensus 75 ---a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 75 ---GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYA-------PLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp ---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 788999999999 99999999999999998 9887 8888888888888888888888888
Q ss_pred HHHcCCCcHHHHHHHHhh
Q 008887 517 AAAHNPQYNELLEQLENN 534 (550)
Q Consensus 517 al~~~p~~~~~~~~l~~~ 534 (550)
+++++ ++...+..+...
T Consensus 144 al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 144 ALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHC-CCHHHHHHHHHH
T ss_pred HHhcc-cchHHHHHHHHH
Confidence 88888 777776666553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-16 Score=144.22 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=125.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++...+++|..+...|++++|++.|+++++.+|+++.++..+|.+|...|++++|++.+++++.. +|.+. .
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~--- 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTTSA-E--- 74 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH-H---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CchhH-H---
Confidence 45567799999999999999999999999999999999999999999999999999999999999 77776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
++..+|.++...+++++|.+.++++++.. |++. .++..+|.+|.++|++++|++.|+++++++|++..+
T Consensus 75 ---~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 143 (184)
T 3vtx_A 75 ---AYYILGSANFMIDEKQAAIDALQRAIALN-TVYA-------DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRA 143 (184)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch-------HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhH
Confidence 56677888888888888888888888876 7766 788888888888888888888888888888888877
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+...
T Consensus 144 ~~~lg~~ 150 (184)
T 3vtx_A 144 YQSIGLA 150 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=152.01 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=137.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHhhh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-----------GLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~-----------g~~~eA~~~~~~al~l~~~ 435 (550)
-+++.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++... |++++|+..|++++++
T Consensus 37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--- 113 (217)
T 2pl2_A 37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--- 113 (217)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---
Confidence 47788889999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+|++. .+++++|.++...|++++|++.|+++++.+ +++ .++..+|.+|...|++++|+..|+
T Consensus 114 --~P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~-------~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 114 --NPRYA-------PLHLQRGLVYALLGERDKAEASLKQALALE--DTP-------EIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp --CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --CcccH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch-------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88887 378899999999999999999999999985 555 899999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHhh
Q 008887 516 LAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~ 534 (550)
++++.+|++...+..+..+
T Consensus 176 ~al~~~P~~~~~~~~la~~ 194 (217)
T 2pl2_A 176 KALEQAPKDLDLRVRYASA 194 (217)
T ss_dssp HHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHH
Confidence 9999999999988877663
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=136.46 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=107.8
Q ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 008887 394 LALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLE 473 (550)
Q Consensus 394 ~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~ 473 (550)
++..++|+.++++..+|..|++.|+|++|+++|++++++ +|.++ .+++++|.++..+|++++|++.|+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~ 71 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENA-------ILYSNRAACLTKLMEFQRALDDCD 71 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHhhHHHhhccHHHHHHHHH
Confidence 344578999999999999999999999999999999999 88877 378899999999999999999999
Q ss_pred HHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 474 RIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 474 ~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++++++ |++. .+++.+|.+|..+|++++|++.|+++++++|++.+++..+.+
T Consensus 72 ~al~~~-p~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 72 TCIRLD-SKFI-------KGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhh-hhhh-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 999998 8877 899999999999999999999999999999999999888766
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-16 Score=148.02 Aligned_cols=156 Identities=16% Similarity=0.043 Sum_probs=141.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+++.++..|..++..|++++|++.|+++++.+| .+..+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~--- 76 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYNLA--- 76 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCSHH---
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CcchH---
Confidence 4778899999999999999999999999999999 89999999999999999999999999999999 77755
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ-- 523 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~-- 523 (550)
.+++.+|.++..+|++++|++.++++++.. |++.........++..+|.++...|++++|++.|+++++++|+
T Consensus 77 ----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 151 (228)
T 4i17_A 77 ----NAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKW 151 (228)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHH
T ss_pred ----HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence 378899999999999999999999999998 8776444445577999999999999999999999999999999
Q ss_pred cHHHHHHHHhhH
Q 008887 524 YNELLEQLENND 535 (550)
Q Consensus 524 ~~~~~~~l~~~~ 535 (550)
+..++..+....
T Consensus 152 ~~~~~~~l~~~~ 163 (228)
T 4i17_A 152 KTDALYSLGVLF 163 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 888887776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.5e-16 Score=145.92 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=141.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+....+.+|..+...|++++|+..|+++++.+|++..++..+|.+|...|++++|+++++++++. +|.++.....
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~ 115 (228)
T 4i17_A 41 DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-----VPGNATIEKL 115 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHH
T ss_pred CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999 8888865555
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC--CccccccchhHHHHHHHHHHhcCCH------------------
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE--EPKSKAHYYDGLVVLASALCNVGRN------------------ 507 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~--~~~~~~~~~~~~~~La~~~~~~g~~------------------ 507 (550)
+..+++.+|.++...|++++|++.|+++++.+ |+ +. .++..+|.+|...|+.
T Consensus 116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~-------~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 187 (228)
T 4i17_A 116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKT-------DALYSLGVLFYNNGADVLRKATPLASSNKEKYAS 187 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHH-------HHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHH
T ss_pred HHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccH-------HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 55689999999999999999999999999997 86 66 8999999999999998
Q ss_pred ---------HHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 508 ---------AEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 508 ---------~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++|+.+++++++++|++.+....+.+
T Consensus 188 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 188 EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999998888776
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-16 Score=144.68 Aligned_cols=152 Identities=9% Similarity=0.095 Sum_probs=128.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL----------------MGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~----------------lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.+|...|++++|+.+|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999 99999999999999999999999
Q ss_pred HhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchh-------------------
Q 008887 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD------------------- 492 (550)
Q Consensus 432 l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~------------------- 492 (550)
+ +|.+. .+++++|.++...|++++|++.|+++++++ |+++........
T Consensus 83 ~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 83 K-----APNNV-------DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp H-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred H-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9 88887 388899999999999999999999999998 988732221111
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 493 ---------GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 493 ---------~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+++.+|.++...|++++|+.+|+++++++|+.. ....+.+
T Consensus 150 ~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~ 198 (208)
T 3urz_A 150 LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDK 198 (208)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHH
T ss_pred HhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 223344455556789999999999999999854 4444444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=158.24 Aligned_cols=150 Identities=11% Similarity=0.016 Sum_probs=138.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
.++.+..+|..+...|++++|++.|+++++.+|++..+|+.+|.++...|+ +++|+++|++++++ +|.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-----~P~~~---- 166 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----QPKNY---- 166 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----CCCCH----
Confidence 345566899999999999999999999999999999999999999999997 99999999999999 88887
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.+|+++|.++...|++++|++.|+++++++ |++. .+|+++|.++..+|++++|+++|+++++++|++..
T Consensus 167 ---~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~-------~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 167 ---QVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNY-------HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp ---HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred ---HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence 388999999999999999999999999998 9888 99999999999999999999999999999999999
Q ss_pred HHHHHHhhHHH
Q 008887 527 LLEQLENNDEE 537 (550)
Q Consensus 527 ~~~~l~~~~~~ 537 (550)
++..+..+...
T Consensus 236 a~~~lg~~l~~ 246 (382)
T 2h6f_A 236 VWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888765444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=139.54 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=131.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+..+|..+...|++++|+..+++++..+|++..++..+|.++...+++++|.+.++++++. +|.+. .
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-----~~~~~-~--- 108 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-----NTVYA-D--- 108 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccch-H---
Confidence 67788899999999999999999999999999999999999999999999999999999999999 88776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
++..+|.++..+|++++|++.|+++++.+ |++. .++..+|.+|.++|++++|++.|+++++++|++..
T Consensus 109 ---~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 109 ---AYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFI-------RAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred ---HHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhh-------hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 77789999999999999999999999998 8887 99999999999999999999999999999998654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=136.69 Aligned_cols=116 Identities=10% Similarity=0.019 Sum_probs=109.5
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 008887 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (550)
Q Consensus 390 ~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~ 469 (550)
..++++++.+|+++.+++.+|.++.+.|++++|+++|++++++ +|.++ . +|+++|.++...|++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~-~------~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNV-D------YIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H------HHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-H------HHHHHHHHHHHHccHHHHH
Confidence 4467778899999999999999999999999999999999999 89887 3 8889999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 470 ~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
+.|+++++++ |+++ .+++++|.+|.++|++++|+..|+++++++|+..
T Consensus 91 ~~~~~al~l~-P~~~-------~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFALG-KNDY-------TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHS-SSCC-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhhC-CCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999998 9988 9999999999999999999999999999999875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=134.67 Aligned_cols=126 Identities=18% Similarity=0.097 Sum_probs=113.9
Q ss_pred ChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHH
Q 008887 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWE 466 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~ 466 (550)
.+...|+++++.+|++..+++.+|.++...|++++|+..|+++++. +|.++ . +++++|.++...|+++
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~------~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS-R------FFLGLGACRQAMGQYD 72 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H------HHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccH-H------HHHHHHHHHHHHhhHH
Confidence 3445789999999999999999999999999999999999999999 88887 3 7889999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 467 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 467 eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
+|++.|+++++++ |+++ .+++.+|.+|...|++++|++.|+++++++|++++......
T Consensus 73 ~A~~~~~~al~l~-p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 73 LAIHSYSYGAVMD-IXEP-------RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHHHHHS-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHhcC-CCCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 9999999999998 9888 99999999999999999999999999999988766544333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=141.46 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=134.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
-+++.++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.+|...|++++|+..|+++++. +|.++.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~ 87 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-----YQIDPR 87 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTT
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----CCCCch
Confidence 378899999999999999999999999999999999 899999999999999999999999999999 887663
Q ss_pred hHHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHhcCCCCCCccccccchhHH--------------HHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIR--------QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL--------------VVLASAL 501 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~--------~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~--------------~~La~~~ 501 (550)
.. .+++.+|.++.. .|++++|++.|+++++.. |++. ....+. +.+|.+|
T Consensus 88 ~~----~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~----~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 88 VP----QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHE----LVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp HH----HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCT----THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCch----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 478889999999 999999999999999998 8776 111222 8899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHh
Q 008887 502 CNVGRNAEAEKYLRLAAAHNPQY---NELLEQLEN 533 (550)
Q Consensus 502 ~~~g~~~eA~~~l~~al~~~p~~---~~~~~~l~~ 533 (550)
.+.|++++|+..|+++++.+|+. .+++..+..
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~ 193 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMR 193 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 99999999999999999999984 445555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-15 Score=128.13 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.+.++|..++..|++++|++.|+++++.+|+++.+++++|.+|...|++++|++.|++++++ +|.+.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~------ 81 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSKFI------ 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhhhh------
Confidence 4456699999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 501 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~ 501 (550)
.+++++|.++..+|++++|++.|+++++++ |++. +++..++.|+
T Consensus 82 -~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~-------~a~~~l~~~l 125 (126)
T 4gco_A 82 -KGYIRKAACLVAMREWSKAQRAYEDALQVD-PSNE-------EAREGVRNCL 125 (126)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHC
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCH-------HHHHHHHHhc
Confidence 388899999999999999999999999998 9888 8888888874
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=168.15 Aligned_cols=136 Identities=18% Similarity=0.137 Sum_probs=129.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+.++|..+...|++++|++.|+++++++|+++.+++++|.+|...|++++|+++|++++++ +|++.
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~P~~~----- 111 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----NPAFA----- 111 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 67788899999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.+++++|.++.++|++++|++.|+++++++ |++. .++.++|.+|..+|++++|.+.+++++++.|+
T Consensus 112 --~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~-------~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 112 --DAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFP-------DAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCH-------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-------HHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 388999999999999999999999999998 9888 99999999999999999999999999987644
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=152.87 Aligned_cols=148 Identities=10% Similarity=0.029 Sum_probs=137.0
Q ss_pred CChHHHHHHHHHHHHcCC-CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 367 LTPKELIALSVKFLSKGD-KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~-~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
-+...+..+|..+...|+ +++|+..|+++++.+|++..+|+++|.++...|++++|+.+|++++++ +|.+. .
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-----dP~~~-~- 201 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-----DAKNY-H- 201 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----CTTCH-H-
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CccCH-H-
Confidence 367788899999999997 999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh-cCCHHHH-----HHHHHHHHH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN-VGRNAEA-----EKYLRLAAA 519 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~-~g~~~eA-----~~~l~~al~ 519 (550)
+|+++|.++...|++++|+++|+++++++ |++. .+|.++|.++.. .|+.++| +++|+++++
T Consensus 202 -----a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~-------~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 202 -----AWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN-------SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp -----HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998 9888 999999999999 5555888 599999999
Q ss_pred cCCCcHHHHHHHHhh
Q 008887 520 HNPQYNELLEQLENN 534 (550)
Q Consensus 520 ~~p~~~~~~~~l~~~ 534 (550)
++|++..++..+...
T Consensus 269 l~P~~~~a~~~l~~l 283 (382)
T 2h6f_A 269 LVPHNESAWNYLKGI 283 (382)
T ss_dssp HSTTCHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHH
Confidence 999999988877653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-15 Score=129.87 Aligned_cols=124 Identities=15% Similarity=0.052 Sum_probs=109.4
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 008887 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGI 469 (550)
Q Consensus 390 ~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~ 469 (550)
..|+++++.+|++...++.+|..+...|++++|+..|+++++. +|.++ . +++.+|.++...|++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~------~~~~lg~~~~~~g~~~~A~ 72 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDA-R------YFLGLGACRQSLGLYEQAL 72 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H------HHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccH-H------HHHHHHHHHHHHhhHHHHH
Confidence 5678888899999999999999999999999999999999999 88877 3 7888999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 470 ~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+.|+++++.+ |+++ .+++.+|.+|...|++++|+..|+++++++|++++......+
T Consensus 73 ~~~~~al~~~-p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 73 QSYSYGALMD-INEP-------RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHHHC-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHhcC-CCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 9999999998 9888 999999999999999999999999999999887765554444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-14 Score=119.48 Aligned_cols=134 Identities=25% Similarity=0.365 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
+.++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------- 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSA------- 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCch-------
Confidence 356688999999999999999999999999999999999999999999999999999999999 77665
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.+++.+|.++...|++++|++.++++++.. |.+. .++..+|.++...|++++|...++++++.+|+
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSA-------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 267789999999999999999999999987 7766 89999999999999999999999999999886
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=154.30 Aligned_cols=147 Identities=15% Similarity=0.063 Sum_probs=136.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhhcC
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK---------GLLEEAVEYLECAISKLFLAG 437 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~---------g~~~eA~~~~~~al~l~~~~~ 437 (550)
-+++.+..+|..+...|++++|+++|+++++.+|+ ..++..+|.+|... |++++|+++|++++++
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----- 208 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----- 208 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----
Confidence 36778889999999999999999999999999999 79999999999999 9999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHhcCCCC---CCccccccchhHHHHHHHHHHhcCC
Q 008887 438 HPTEPEAIDLLIVASQWSGVACIRQ--------EKWEEGIAHLERIGNLKEP---EEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 438 ~p~~~~~~~~l~~a~~~lg~~~~~~--------g~~~eA~~~~~~al~~~~p---~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
+|.+. .+++++|.++... |++++|+++|+++++.+ | .++ .+++++|.+|...|+
T Consensus 209 ~p~~~-------~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~-------~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 209 DVLDG-------RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNP-------DLHLNRATLHKYEES 273 (474)
T ss_dssp CTTCH-------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCH-------HHHHHHHHHHHHTTC
T ss_pred CCCCH-------HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCH-------HHHHHHHHHHHHcCC
Confidence 88877 3788999999999 99999999999999997 8 666 999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 507 NAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 507 ~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+++|.+.|+++++++|++..++..+..+
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999887776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-13 Score=131.23 Aligned_cols=145 Identities=18% Similarity=0.195 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.++.+|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~------ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-----DSRNA------ 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcH------
Confidence 4456689999999999999999999999999999999999999999999999999999999999 77665
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhc--CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGN--LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~--~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.++..+|.++...|++++|+++++++++ .. |.+. .++..+|.++...|++++|.+.++++++.+|++..
T Consensus 106 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (252)
T 2ho1_A 106 -RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY-PERS-------RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176 (252)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC-TTHH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred -HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC-cccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence 2677899999999999999999999998 43 4444 78889999999999999999999999999998887
Q ss_pred HHHHHHh
Q 008887 527 LLEQLEN 533 (550)
Q Consensus 527 ~~~~l~~ 533 (550)
.+..+..
T Consensus 177 ~~~~la~ 183 (252)
T 2ho1_A 177 VALEMAD 183 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=131.23 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=130.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
+++.++.+|..++..|++++|+..|+++++.+|++. .+++.+|.+|...|++++|++.|+++++. +|+++..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPNI 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCcH
Confidence 677889999999999999999999999999998864 78999999999999999999999999999 8887743
Q ss_pred HHHHHHHHHHHHHHHHH------------------hcCHHHHHHHHHHHhcCCCCCCcccccc----------chhHHHH
Q 008887 445 IDLLIVASQWSGVACIR------------------QEKWEEGIAHLERIGNLKEPEEPKSKAH----------YYDGLVV 496 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~------------------~g~~~eA~~~~~~al~~~~p~~~~~~~~----------~~~~~~~ 496 (550)
. .+++.+|.++.. .|++++|++.|+++++.. |++...... .......
T Consensus 78 ~----~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~ 152 (225)
T 2yhc_A 78 D----YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYS 152 (225)
T ss_dssp H----HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 367788988876 579999999999999998 887622110 0122267
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHh
Q 008887 497 LASALCNVGRNAEAEKYLRLAAAHNPQYNE---LLEQLEN 533 (550)
Q Consensus 497 La~~~~~~g~~~eA~~~l~~al~~~p~~~~---~~~~l~~ 533 (550)
+|.+|.+.|++++|+..|+++++..|+... ++..+..
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~ 192 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMEN 192 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHH
Confidence 899999999999999999999999999863 4444444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-14 Score=143.40 Aligned_cols=147 Identities=19% Similarity=0.169 Sum_probs=135.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.....+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|+++|+++++. +|.+. .
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~--- 306 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-----CPTHA-D--- 306 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTCH-H---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcccH-H---
Confidence 56677799999999999999999999999999999999999999999999999999999999999 78776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
++..+|.++...|++++|++.++++++.. |++. .++..+|.+|.+.|++++|.+.|+++++++|++..+
T Consensus 307 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 307 ---SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFA-------AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp ---HHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCH-------HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 67789999999999999999999999997 8777 899999999999999999999999999999999998
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+...
T Consensus 376 ~~~lg~~ 382 (388)
T 1w3b_A 376 YSNMGNT 382 (388)
T ss_dssp HHHHHHH
T ss_pred HHhHHHH
Confidence 8888764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=141.34 Aligned_cols=148 Identities=10% Similarity=0.029 Sum_probs=110.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++..|..++..|++++|+..|+++++.+|++..+++.+|.+|...|++++|+++++++++. ..++..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~------ 72 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKA------ 72 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTC------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhH------
Confidence 44566778888888888888888888888888888888888888888888888888888888764 011111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
...++..+|.++...|++++|+++|+++++.. |.+. .++..+|.+|...|++++|+..++++++.+|++...
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 144 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRL-------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccH-------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence 11256678888888888888888888888876 7666 778888888888888888888888888887777776
Q ss_pred HHHHH
Q 008887 528 LEQLE 532 (550)
Q Consensus 528 ~~~l~ 532 (550)
+..+.
T Consensus 145 ~~~l~ 149 (272)
T 3u4t_A 145 FYELG 149 (272)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-14 Score=132.60 Aligned_cols=146 Identities=13% Similarity=0.144 Sum_probs=133.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.....+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 159 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-----NENDT----- 159 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCccH-----
Confidence 45567789999999999999999999999999999999999999999999999999999999999 77665
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.+++.+|.++...|++++|++.++++++.. |++. .++..+|.+|...|++++|...++++++.+|++...
T Consensus 160 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 160 --EARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHA-------DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp --HHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 267789999999999999999999999997 8776 899999999999999999999999999999999998
Q ss_pred HHHHHh
Q 008887 528 LEQLEN 533 (550)
Q Consensus 528 ~~~l~~ 533 (550)
+..+..
T Consensus 230 ~~~~~~ 235 (243)
T 2q7f_A 230 LHAKKL 235 (243)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 887766
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-15 Score=162.56 Aligned_cols=146 Identities=11% Similarity=0.017 Sum_probs=138.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..+...|++++|++.|+++++.+|++..+++.+|.+|...|++++|++.|++++++ +|++.
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~----- 501 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-----FPGEL----- 501 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCS-----
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh-----
Confidence 66788899999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.+++++|.++.++|++++ +++|+++++.+ |++. .+++++|.+|.++|++++|++.|+++++++|++..+
T Consensus 502 --~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 570 (681)
T 2pzi_A 502 --APKLALAATAELAGNTDE-HKFYQTVWSTN-DGVI-------SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTA 570 (681)
T ss_dssp --HHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHH
T ss_pred --HHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchH-------HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHH
Confidence 378899999999999999 99999999998 9888 999999999999999999999999999999999998
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+.++..+
T Consensus 571 ~~~~~~~ 577 (681)
T 2pzi_A 571 RLTSAVT 577 (681)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.2e-14 Score=127.80 Aligned_cols=133 Identities=16% Similarity=0.127 Sum_probs=117.2
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
+...|++++|+..++++++.+|++..+++.+|.+|...|++++|+.+|+++++. +|.++ .++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-----RGENA-------ELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HCSCH-------HHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHH
Confidence 466789999999999999999999999999999999999999999999999999 77765 277789999
Q ss_pred -HHHhcCH--HHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 459 -CIRQEKW--EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 459 -~~~~g~~--~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
+...|++ ++|++.++++++.+ |++. .+++.+|.+|...|++++|...++++++.+|++......+
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALD-SNEI-------TALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 8899999 99999999999998 8877 8999999999999999999999999999999886544433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=128.38 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+..+..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~------ 76 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-----KPDSA------ 76 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCh------
Confidence 4455567777777777777777777777777777777777777777777777777777777777 55554
Q ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 449 IVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 449 ~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.++..+|.++... |++++|++.++++++ . +.++ ....++..+|.++...|++++|+..++++++.+|++...
T Consensus 77 -~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 149 (225)
T 2vq2_A 77 -EINNNYGWFLCGRLNRPAESMAYFDKALA-D-PTYP----TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA 149 (225)
T ss_dssp -HHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-TTCS----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-cCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchH
Confidence 2555677777777 777777777777776 2 2222 222666777777777777777777777777777776665
Q ss_pred HHHHHh
Q 008887 528 LEQLEN 533 (550)
Q Consensus 528 ~~~l~~ 533 (550)
+..+..
T Consensus 150 ~~~la~ 155 (225)
T 2vq2_A 150 FKELAR 155 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=125.30 Aligned_cols=143 Identities=16% Similarity=0.275 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.+. .
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~ 77 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDNV-------K 77 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH-------H
Confidence 34466777777777777777777777777777777777777777777777777777777777 55554 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
++..+|.++...|++++|+++++++++.. |.+. .++..+|.++...|++++|...++++++.+|++...+..
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINF-------NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhH-------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 55567777777777777777777777765 6555 667777777777777777777777777777776665555
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+..
T Consensus 150 la~ 152 (186)
T 3as5_A 150 IAF 152 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=130.21 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=133.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.+. .
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~--- 126 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMENG-D--- 126 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCSH-H---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCH-H---
Confidence 56677799999999999999999999999999999999999999999999999999999999999 77765 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
++..+|.++...|++++|++.++++++.. |++. .++..+|.++...|++++|+..++++++.+|++...
T Consensus 127 ---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 195 (243)
T 2q7f_A 127 ---LFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDT-------EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195 (243)
T ss_dssp ---HHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHH
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 67789999999999999999999999997 8776 899999999999999999999999999999999887
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+...
T Consensus 196 ~~~la~~ 202 (243)
T 2q7f_A 196 FYNAGVT 202 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=124.30 Aligned_cols=139 Identities=22% Similarity=0.256 Sum_probs=128.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.....+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|.++++++++. +|.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 110 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINF----- 110 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhH-----
Confidence 45567799999999999999999999999999999999999999999999999999999999999 77765
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.++..+|.++...|++++|+++++++++.. |.+. .++..+|.++...|++++|...++++++.+|++..
T Consensus 111 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 111 --NVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEG-------KVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 267789999999999999999999999997 8776 89999999999999999999999999999887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.7e-14 Score=133.46 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHh--------------------------hCCCChHHHHHHHHHHHHcCCHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALN--------------------------KEPDNINALILMGQTQLQKGLLEEA 422 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~--------------------------~~p~~~~a~~~lg~~~~~~g~~~eA 422 (550)
+..+..+|..+...|++++|+..++++++ .+|++..++..+|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 45667999999999999999999999999 6777888999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH
Q 008887 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 423 ~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
+++++++++. +|.++ .++..+|.++...|++++|++.++++++.. |++. .++..+|.+|.
T Consensus 159 ~~~~~~a~~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~-------~~~~~l~~~~~ 218 (258)
T 3uq3_A 159 VKAYTEMIKR-----APEDA-------RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFV-------RAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CcccH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHH-------HHHHHHHHHHH
Confidence 9999999999 77776 377889999999999999999999999997 8777 89999999999
Q ss_pred hcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHh
Q 008887 503 NVGRNAEAEKYLRLAAAHN------PQYNELLEQLEN 533 (550)
Q Consensus 503 ~~g~~~eA~~~l~~al~~~------p~~~~~~~~l~~ 533 (550)
..|++++|...++++++++ |++.+.+..+.+
T Consensus 219 ~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 219 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 9999999999999999999 998888887765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=141.02 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=131.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|++.|+++++.+|++..++..+|.+|...|++++|+++|+++++. +|.+......
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 172 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ-----NPKYKYLVKN 172 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CHHHHCC---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CccchHHHhh
Confidence 45677899999999999999999999999999999999999999999999999999999999887 4332211000
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc
Q 008887 448 ---------------------------------------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA 488 (550)
Q Consensus 448 ---------------------------------------l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~ 488 (550)
-..+++++|.++...|++++|++.|+++++.. |++.
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~---- 247 (365)
T 4eqf_A 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDY---- 247 (365)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH----
T ss_pred hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH----
Confidence 01367789999999999999999999999997 8777
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 489 HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 489 ~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.++..+|.+|...|++++|+..|+++++++|++...+..+...
T Consensus 248 ---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 248 ---SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS 290 (365)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 8999999999999999999999999999999998887777654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=139.66 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=135.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..+...|++++|++.|+++++.+|+++.+++.+|.++...|++++|++.++++++. +|... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~~~-~--- 186 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQDTR-Y--- 186 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCSHH-H---
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcchH-H---
Confidence 45677899999999999999999999999999999999999999999999999999999999888 66322 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--H
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY--N 525 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~--~ 525 (550)
.....+..+...++.++|++.++++++.+ |++. .+++.+|.+|.+.|++++|++.|+++++.+|++ .
T Consensus 187 ---~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~-------~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 187 ---QGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDA-------ALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp ---HHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred ---HHHHHHHHHHhhcccCccHHHHHHHHhcC-CccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 45567788889999999999999999998 9888 999999999999999999999999999999999 7
Q ss_pred HHHHHHHhhHHHH
Q 008887 526 ELLEQLENNDEEF 538 (550)
Q Consensus 526 ~~~~~l~~~~~~~ 538 (550)
.++..+..+....
T Consensus 256 ~a~~~l~~~~~~~ 268 (287)
T 3qou_A 256 QTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc
Confidence 7888877755544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=152.24 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=136.6
Q ss_pred ChHHHHHHHHHHHHcCCC-CChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDK-ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~-~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++..++.+|..+...|++ ++|+++|+++++.+|++..+++.+|.+|...|++++|+++|++++++ +|+ . .
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~-~-~-- 171 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-----CKN-K-V-- 171 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----CCC-H-H--
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCC-H-H--
Confidence 677888999999999999 99999999999999999999999999999999999999999999999 766 2 2
Q ss_pred HHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc--------CCHHH
Q 008887 447 LLIVASQWSGVACIRQ---------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV--------GRNAE 509 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~---------g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~--------g~~~e 509 (550)
++.++|.++... |++++|++.|+++++.+ |++. .+++.+|.+|... |++++
T Consensus 172 ----~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 172 ----SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDG-------RSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp ----HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ----HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHhhccccchHHH
Confidence 788999999999 99999999999999998 8888 9999999999999 99999
Q ss_pred HHHHHHHHHHcCC---CcHHHHHHHHhh
Q 008887 510 AEKYLRLAAAHNP---QYNELLEQLENN 534 (550)
Q Consensus 510 A~~~l~~al~~~p---~~~~~~~~l~~~ 534 (550)
|++.|+++++++| ++..++.++..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~ 267 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATL 267 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 9999999999999 888888877664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=133.46 Aligned_cols=150 Identities=14% Similarity=0.036 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhhhcC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQ--------KGLLEEAVEYLECAISKLFLAG 437 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~--------~g~~~eA~~~~~~al~l~~~~~ 437 (550)
++.++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++.. .|++++|+..|+++++.
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----- 126 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR----- 126 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----
Confidence 6678899999999999999999999999998854 6789999999999 99999999999999999
Q ss_pred CCCChhhHHHH----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc---
Q 008887 438 HPTEPEAIDLL----------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV--- 504 (550)
Q Consensus 438 ~p~~~~~~~~l----------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~--- 504 (550)
+|.++...... ...++.+|.++...|++++|+..|+++++.. |++. ....+++.+|.+|..+
T Consensus 127 ~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~----~~~~a~~~l~~~~~~~g~~ 201 (261)
T 3qky_A 127 YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-PDTP----WADDALVGAMRAYIAYAEQ 201 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTST----THHHHHHHHHHHHHHHHHT
T ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCCc----hHHHHHHHHHHHHHHhccc
Confidence 88876433221 0112789999999999999999999999987 7654 3347999999999977
Q ss_pred -------CCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 505 -------GRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 505 -------g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
|++++|+..|+++++.+|++..+.
T Consensus 202 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 202 SVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred chhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 999999999999999999996543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-14 Score=125.27 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
...+.+|..|+..|++++|++.|+++++.+|+++.+++.+|.+|...|++++|+.+|++++++ +|+++ .
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-~----- 100 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL-----NPTQK-D----- 100 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCCCH-H-----
Confidence 345689999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHH-HHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 450 VASQWSGVACIRQEKWEEGIAH-LERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~-~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
+++++|.++.+.|++++|.+. ++++++++ |+++ .++..++.++...|+
T Consensus 101 -~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~-------~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 101 -LVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSP-------AVYKLKEQLLDCEGE 149 (150)
T ss_dssp -HHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHTCCC
T ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCH-------HHHHHHHHHHHHhCc
Confidence 788999999999999988776 59999998 9888 899999999998886
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=136.73 Aligned_cols=157 Identities=14% Similarity=0.145 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC-hhhHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE-PEAIDL 447 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~-~~~~~~ 447 (550)
......+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++.....+++.. +...
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-- 236 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE-- 236 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH--
Confidence 4456689999999999999999999999999999999999999999999999999999999998422222211 1111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.++..+|.++...|++++|+++++++++.. |++. .++..+|.+|...|++++|.++++++++++|++...
T Consensus 237 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 237 --PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNA-------STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCS-------HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccch-------HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 277789999999999999999999999997 8877 999999999999999999999999999999999999
Q ss_pred HHHHHhhHHH
Q 008887 528 LEQLENNDEE 537 (550)
Q Consensus 528 ~~~l~~~~~~ 537 (550)
+..+....+.
T Consensus 307 ~~~l~~~~~~ 316 (330)
T 3hym_B 307 VTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888775443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=139.35 Aligned_cols=147 Identities=20% Similarity=0.143 Sum_probs=136.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++. +|.++ .
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~--- 272 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFP-D--- 272 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCH-H---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH-H---
Confidence 56677899999999999999999999999999999999999999999999999999999999999 88877 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
++.++|.++...|++++|++.|+++++.. |++. .++..+|.++.+.|++++|++.++++++.+|++...
T Consensus 273 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 273 ---AYCNLANALKEKGSVAEAEDCYNTALRLC-PTHA-------DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp ---HHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 77889999999999999999999999997 8877 899999999999999999999999999999999888
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+...
T Consensus 342 ~~~l~~~ 348 (388)
T 1w3b_A 342 HSNLASV 348 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=131.71 Aligned_cols=159 Identities=12% Similarity=0.028 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.+..+|..++..|++++|+..|+++++.+ +++.++..+|.++...|++++|+++++++++. +|.........
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ-----GREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CcccccchHHH
Confidence 4567799999999999999999999999999 99999999999999999999999999999999 44432122222
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc-------------------cccccchhHHHHHHHHHHhcCCHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP-------------------KSKAHYYDGLVVLASALCNVGRNAE 509 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~-------------------~~~~~~~~~~~~La~~~~~~g~~~e 509 (550)
..+++.+|.++...|++++|+++++++++.. +... ...+....++..+|.++...|++++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-chhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 3478899999999999999999999999953 3200 0111334788899999999999999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 510 AEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 510 A~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
|+..++++++.+|++...+..+...
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~ 182 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAA 182 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHH
Confidence 9999999999999888877666553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=140.22 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+...++.+|..+...|++++|+..|+++++.+|++..+++.+|.+|...|++++|+++|++++++ +|.+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~----- 133 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-----QPNNL----- 133 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH-----
Confidence 34467899999999999999999999999999999999999999999999999999999999999 78776
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc-------------------------------------c-
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA-------------------------------------H- 489 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~-------------------------------------~- 489 (550)
.+++.+|.++...|++++|++.|+++++.. |++..... .
T Consensus 134 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 210 (365)
T 4eqf_A 134 --KALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210 (365)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred --HHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence 378889999999999999999999998876 54332211 1
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 490 -YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 490 -~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
...++..+|.+|...|++++|++.|+++++.+|++...+..+...
T Consensus 211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 347889999999999999999999999999999998888777654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-13 Score=129.70 Aligned_cols=146 Identities=19% Similarity=0.124 Sum_probs=111.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhcCCCCChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS--KLFLAGHPTEPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~--l~~~~~~p~~~~~~ 445 (550)
++..+..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++ . +|.+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~--- 141 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL-----YPERS--- 141 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTT-----CTTHH---
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcc-----CcccH---
Confidence 3445667888888888888888888888888888888888888888888888888888888776 3 33322
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.++..+|.++...|++++|+++++++++.. |.+. .++..+|.++...|++++|...++++++.+|++.
T Consensus 142 ----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 142 ----RVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQP-------SVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 266678888888888888888888888876 6665 7788888888888888888888888888888777
Q ss_pred HHHHHHHh
Q 008887 526 ELLEQLEN 533 (550)
Q Consensus 526 ~~~~~l~~ 533 (550)
..+..+..
T Consensus 210 ~~~~~~~~ 217 (252)
T 2ho1_A 210 RSLLLGIR 217 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=117.09 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=99.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
..+..+..+|..+...|++++|+++|+++++. +|.++ .+++++|.++...|++++|++.|+++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~- 68 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDA-------RGYSNRAAALAKLMSFPEAIADCNKAIEKD- 68 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCh-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 45677889999999999999999999999999 77776 377889999999999999999999999987
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHhh
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN------PQYNELLEQLENN 534 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~------p~~~~~~~~l~~~ 534 (550)
|++. .+++.+|.++..+|++++|+..|+++++++ |++...+..+..+
T Consensus 69 p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 69 PNFV-------RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCcH-------HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8777 889999999999999999999999999999 8888888877763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=118.63 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=101.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.+.++..+|.++++.|+|++|+++|++++++ +|.+. .+++++|.++..+|++++|++.|+++++++ |
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~-------~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~ 73 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNI-------TFYNNKAAVYFEEKKFAECVQFCEKAVEVG-R 73 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-c
Confidence 4567889999999999999999999999999 88876 378899999999999999999999999987 7
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+....+.....++..+|.++..+|++++|++.|+++++.+|+ ++....+.+
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 776666666789999999999999999999999999999886 444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-13 Score=133.95 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=135.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALI------------LMGQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~------------~lg~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
++..+..+|..+...|++++|+..++++++.+|++..++. .+|.++...|++++|++.++++++.
T Consensus 187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 263 (359)
T 3ieg_A 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--- 263 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 5667789999999999999999999999999999988765 3488899999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+|.++. ....++..+|.++...|++++|++.++++++.+ |+++ .++..+|.+|...|++++|.+.|+
T Consensus 264 --~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 264 --EPSVAE---YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNV-------NALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp --CCSSHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --CCCchH---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777652 222356789999999999999999999999997 8887 899999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHhhH
Q 008887 516 LAAAHNPQYNELLEQLENND 535 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~~ 535 (550)
++++++|++...+..+.++.
T Consensus 331 ~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 331 AAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHH
Confidence 99999999999998888743
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=123.34 Aligned_cols=102 Identities=11% Similarity=0.110 Sum_probs=96.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..++..|++++|+..|+++++.+|+++.+|+++|.+|...|++++|+++|++++++ +|.++ .
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~P~~~-~--- 105 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKNDY-T--- 105 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSSCC-H---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CCCCc-H---
Confidence 55677899999999999999999999999999999999999999999999999999999999999 99888 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+++++|.++...|++++|++.|+++++.. |+
T Consensus 106 ---~~~~lg~~~~~lg~~~eA~~~~~~al~l~-~~ 136 (151)
T 3gyz_A 106 ---PVFHTGQCQLRLKAPLKAKECFELVIQHS-ND 136 (151)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 88999999999999999999999999997 64
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=148.01 Aligned_cols=142 Identities=22% Similarity=0.160 Sum_probs=132.5
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
-+++.+..+|..+...|++++|++.|+++++.+|++..+++.+|.+|...|++++|+++|+++++. +|.+.
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---- 91 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEHP---- 91 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH----
Confidence 367788899999999999999999999999999999999999999999999999999999999999 88776
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCC
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV---GRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~---g~~~eA~~~l~~al~~~p~ 523 (550)
.+++++|.++...|++++|++.|+++++.+ |++. .++..+|.++... |++++|.+.++++++.+|+
T Consensus 92 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 92 ---GIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEP-------YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 378899999999999999999999999998 8877 8999999999999 9999999999999999988
Q ss_pred cHHHH
Q 008887 524 YNELL 528 (550)
Q Consensus 524 ~~~~~ 528 (550)
....+
T Consensus 161 ~~~~~ 165 (568)
T 2vsy_A 161 AVEPF 165 (568)
T ss_dssp CSCHH
T ss_pred ccChH
Confidence 65443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-13 Score=125.75 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=129.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++..+..+|..+...|++++|++.++++++.+|++..++..+|.++... |++++|+++++++++. ..+|...
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~---- 113 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD---PTYPTPY---- 113 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS---TTCSCHH----
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC---cCCcchH----
Confidence 3456778999999999999999999999999999999999999999999 9999999999999872 0033322
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP-QYN 525 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p-~~~ 525 (550)
.+++.+|.++...|++++|++.++++++.. |++. .++..+|.++...|++++|...++++++.+| ++.
T Consensus 114 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 182 (225)
T 2vq2_A 114 ---IANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFP-------PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182 (225)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 267789999999999999999999999997 8776 8999999999999999999999999999999 888
Q ss_pred HHHHHHHh
Q 008887 526 ELLEQLEN 533 (550)
Q Consensus 526 ~~~~~l~~ 533 (550)
..+..+..
T Consensus 183 ~~~~~~~~ 190 (225)
T 2vq2_A 183 DDLLLGWK 190 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77655544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-13 Score=119.80 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=118.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+..+..+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----- 81 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI----- 81 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH-----
Confidence 34567799999999999999999999999999999999999999999999999999999999999 78776
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHH--HHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV--LASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~--La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
.+++.+|.++...|++++|+++|+++++.. |.+. .++.. ++..+...|++++|++.++++..+
T Consensus 82 --~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 82 --KGYYRRAASNMALGKFRAALRDYETVVKVK-PHDK-------DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 378899999999999999999999999997 8776 66644 444488999999999999887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-13 Score=134.20 Aligned_cols=154 Identities=18% Similarity=0.128 Sum_probs=134.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|+++++++++. +|.+......
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~ 171 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY-----TPAYAHLVTP 171 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----STTTGGGCC-
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHHHH
Confidence 56677899999999999999999999999999999999999999999999999999999999887 6654422210
Q ss_pred --------------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 448 --------------------------------------------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 448 --------------------------------------------l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
...++..+|.++...|++++|++.|+++++.. |++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 12367789999999999999999999999997 877
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
. .++..+|.++...|++++|+..|+++++++|++...+..+...
T Consensus 251 ~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 294 (368)
T 1fch_A 251 Y-------LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS 294 (368)
T ss_dssp H-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 7 8999999999999999999999999999999998887776654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-13 Score=133.99 Aligned_cols=146 Identities=21% Similarity=0.177 Sum_probs=123.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++++++++. +|.+. .
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~--- 72 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDFT-A--- 72 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-H---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcc-h---
Confidence 45678899999999999999999999999999999999999999999999999999999999999 78776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC---CCccccccchhHHHHH------------HHHHHhcCCHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP---EEPKSKAHYYDGLVVL------------ASALCNVGRNAEAEK 512 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p---~~~~~~~~~~~~~~~L------------a~~~~~~g~~~eA~~ 512 (550)
++..+|.++...|++++|++.|+++++.. | ++. .++..+ |.++...|++++|++
T Consensus 73 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 73 ---ARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEK-------EAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp ---HHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChH-------HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 77889999999999999999999999997 7 544 444444 567777777777777
Q ss_pred HHHHHHHcCCCcHHHHHHHHh
Q 008887 513 YLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 513 ~l~~al~~~p~~~~~~~~l~~ 533 (550)
.++++++.+|++...+..+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 142 FLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHH
Confidence 777777777776665555444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-13 Score=125.31 Aligned_cols=140 Identities=17% Similarity=0.090 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.++.+|..+...|++++|+..|++++ ++ ++.+++.+|.+|...|++++|+++|+++++. +|.+. .
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~-------~ 72 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLA-------V 72 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccch-------H
Confidence 45689999999999999999999996 33 7899999999999999999999999999999 77776 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc---------ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK---------SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~---------~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+++++|.++...|++++|++.|+++++.. |++.. ..+....+++.+|.+|...|++++|.+.++++++++
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 78899999999999999999999999987 65431 223345899999999999999999999999999999
Q ss_pred CCcHH
Q 008887 522 PQYNE 526 (550)
Q Consensus 522 p~~~~ 526 (550)
|++..
T Consensus 152 p~~~~ 156 (213)
T 1hh8_A 152 SEPRH 156 (213)
T ss_dssp CSGGG
T ss_pred ccccc
Confidence 97643
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-14 Score=127.94 Aligned_cols=145 Identities=16% Similarity=0.116 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
..+..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|++.++++++. +| ++..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~~~~------ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-DNSY------ 75 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-CHHH------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-ChHH------
Confidence 56789999999999999999999999999999999999999999999999999999999988 77 5522
Q ss_pred HHHHHHHH-HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--HHH
Q 008887 451 ASQWSGVA-CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY--NEL 527 (550)
Q Consensus 451 a~~~lg~~-~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~--~~~ 527 (550)
+..++.+ +...++..+|++.++++++.+ |+++ .+++.+|.++...|++++|+..|+++++.+|++ ..+
T Consensus 76 -~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a 146 (176)
T 2r5s_A 76 -KSLIAKLELHQQAAESPELKRLEQELAAN-PDNF-------ELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEV 146 (176)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHH
T ss_pred -HHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHH
Confidence 2223322 234445567899999999998 9888 999999999999999999999999999999986 447
Q ss_pred HHHHHhhHH
Q 008887 528 LEQLENNDE 536 (550)
Q Consensus 528 ~~~l~~~~~ 536 (550)
+..+..+..
T Consensus 147 ~~~l~~~~~ 155 (176)
T 2r5s_A 147 KKTFMDILS 155 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=126.78 Aligned_cols=147 Identities=20% Similarity=0.152 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~----- 111 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN----- 111 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT-----
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----Ccccc-----
Confidence 34566789999999999999999999999999999999999999999999999999999999999 77765
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccc----------------------------------------
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK---------------------------------------- 487 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~---------------------------------------- 487 (550)
.+++.+|.++...|++++|++.++++++.. |++....
T Consensus 112 --~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (275)
T 1xnf_A 112 --YAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188 (275)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 277889999999999999999999999886 6654100
Q ss_pred -----------------------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 488 -----------------------AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 488 -----------------------~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.....++..+|.+|...|++++|...|+++++.+|++...
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 0015788999999999999999999999999999976553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=132.85 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~------ 132 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-----KPDNQ------ 132 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc-----CCCCH------
Confidence 3457799999999999999999999999999999999999999999999999999999999999 78776
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc----------------------------------------
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA---------------------------------------- 488 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~---------------------------------------- 488 (550)
.++..+|.++...|++++|++.++++++.. |++.....
T Consensus 133 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 133 -TALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 277889999999999999999999999987 76654332
Q ss_pred --c--chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 489 --H--YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 489 --~--~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
. ...++..+|.+|...|++++|+..++++++.+|++...+..+...
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 260 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 1 357889999999999999999999999999999998887776653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-13 Score=113.99 Aligned_cols=120 Identities=10% Similarity=0.018 Sum_probs=111.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
.++..++.+|..+...|++++|++.|+++++.+|++..+++.+|.++...|++++|+++++++++. +|.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~---- 84 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTFI---- 84 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCch----
Confidence 367788899999999999999999999999999999999999999999999999999999999999 77766
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
.+++.+|.++...|++++|+++++++++.. |.+. .++..++.++...|+
T Consensus 85 ---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~-------~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 85 ---KGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCK-------EAADGYQRCMMAQYN 133 (133)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGT-------HHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCch-------HHHHHHHHHHHHhcC
Confidence 277889999999999999999999999997 8777 899999999998775
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=134.80 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~-g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+..+.++|..+...|++++|+.+|+++++..+.. ..++..+|.+|... |++++|+++|++++++ .|..
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-----~~~~ 151 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-----YAQD 151 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----HHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----HHhC
Confidence 3456699999999999999999999999987643 56889999999996 9999999999999999 3332
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
. .......++.++|.++..+|++++|+++|+++++.. |+....+......+..+|.++..+|++++|+.+|+++++++
T Consensus 152 ~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 152 Q-SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred C-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2 111222367889999999999999999999999997 76552222233478999999999999999999999999999
Q ss_pred CCcHHH
Q 008887 522 PQYNEL 527 (550)
Q Consensus 522 p~~~~~ 527 (550)
|++...
T Consensus 230 p~~~~~ 235 (292)
T 1qqe_A 230 PNFADS 235 (292)
T ss_dssp ------
T ss_pred CCCCCc
Confidence 987653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=116.53 Aligned_cols=104 Identities=16% Similarity=0.118 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
...++|..++..|++++|+++|+++++.+|+++.++.++|.+|...|++++|++.+++++++ +|.+......+..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV-----GRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh-----CcccchhhHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999 6655544445556
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
+++++|.++..+|++++|+++|+++++..
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88999999999999999999999999975
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=129.10 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=132.0
Q ss_pred ChHHHHHHHHHHHHcC-CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g-~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++..++.+|..+...| ++++|++.|+++++.+|++..++..+|.++...|++++|+++++++++. +|.+. .
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-~-- 160 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-----MKGCH-L-- 160 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----TTTCS-H--
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----ccccH-H--
Confidence 4567789999999999 9999999999999999999999999999999999999999999999999 77765 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN----- 521 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~----- 521 (550)
++..+|.++...|++++|++.++++++.. |++. .++..+|.++...|++++|...++++++..
T Consensus 161 ----~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 228 (330)
T 3hym_B 161 ----PMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDP-------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228 (330)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred ----HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc
Confidence 66779999999999999999999999998 8877 899999999999999999999999999986
Q ss_pred ----CCcHHHHHHHHh
Q 008887 522 ----PQYNELLEQLEN 533 (550)
Q Consensus 522 ----p~~~~~~~~l~~ 533 (550)
|.....+..+..
T Consensus 229 ~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 229 EVTVDKWEPLLNNLGH 244 (330)
T ss_dssp SCTTTTCCHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 555556655544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=138.92 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=125.4
Q ss_pred HcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh--------hhHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--------EAIDLLIVAS 452 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~--------~~~~~l~~a~ 452 (550)
..+++++|++.++++++.+|+++.+++.+|.++...|++++|+++|++++++ +|.+. ........++
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW-----LEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----TTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----hhccccCChHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999 77762 0111222488
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
+++|.++.++|++++|+++|+++++++ |++. .+++.+|.+|..+|++++|+..|+++++++|++..++..+.
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKALELD-SNNE-------KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999999999999999999999998 8877 99999999999999999999999999999999999887776
Q ss_pred hhH
Q 008887 533 NND 535 (550)
Q Consensus 533 ~~~ 535 (550)
.+.
T Consensus 272 ~~~ 274 (336)
T 1p5q_A 272 VCQ 274 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=128.96 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=127.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMG--QTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg--~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
+++....+|..+...|++++|++.++++++.+|++.......+ ..+...|++++|+..|+++++. +|.++
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~--- 200 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTL--- 200 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCH---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcH---
Confidence 5567779999999999999999999999999999875555444 3344558999999999999999 88876
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCc
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE-AEKYLRLAAAHNPQY 524 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~e-A~~~l~~al~~~p~~ 524 (550)
.+++++|.++...|++++|++.|+++++.+ |+++ +++.++|.++...|+.++ +.++++++++++|++
T Consensus 201 ----~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~-------~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 201 ----LLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP-------ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 378899999999999999999999999998 9888 999999999999999987 568999999999999
Q ss_pred HHHHHHHHh
Q 008887 525 NELLEQLEN 533 (550)
Q Consensus 525 ~~~~~~l~~ 533 (550)
+......++
T Consensus 269 ~~~~d~~~~ 277 (291)
T 3mkr_A 269 PFIKEYRAK 277 (291)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 987765444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8.2e-13 Score=134.12 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
+..+..+|..++..|++++|+..|+++++.+|++ ..+++++|.+|...|++++|+++|++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 4466699999999999999999999999999998 699999999999999999999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH-HH
Q 008887 434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA-EK 512 (550)
Q Consensus 434 ~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA-~~ 512 (550)
+|.+. .+++++|.++...|++++|++.|+++++++ |++. .++..++.++...|++++| ..
T Consensus 226 ----~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~-------~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 226 ----DSNNE-------KGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK-------AAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp ----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 388899999999999999999999999998 8887 8999999999999999999 45
Q ss_pred HHHHHHHc
Q 008887 513 YLRLAAAH 520 (550)
Q Consensus 513 ~l~~al~~ 520 (550)
.|++++..
T Consensus 287 ~~~~~~~~ 294 (336)
T 1p5q_A 287 LYANMFER 294 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=121.11 Aligned_cols=118 Identities=18% Similarity=0.082 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh-----hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE-----AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~-----~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
...+..+|..+...|+|++|++.|++++++ +|.++. ....-..+|.++|.++..+|++++|++.|+++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l-----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEI-----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999999999 676311 1111223899999999999999999999999999
Q ss_pred C-------CCCCCccccccchhHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 478 L-------KEPEEPKSKAHYYDGL----VVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 478 ~-------~~p~~~~~~~~~~~~~----~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+ + |++. .+| +++|.++..+|++++|+..|+++++++|++......++.
T Consensus 86 l~n~~~e~~-pd~~-------~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 86 YFNRRGELN-QDEG-------KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHHHHCCTT-STHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred hhhccccCC-CchH-------HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9 8 8776 888 999999999999999999999999999998876665555
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=144.46 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=136.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|++.|+++++.+|+++.++..+|.+|.+.|++++|+++|+++++.... .+.++..
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~p~~--- 514 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK--TQSNEKP--- 514 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCCCSGG---
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc--cccchhh---
Confidence 55677799999999999999999999999999999999999999999999999999999999988321 1223321
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
...++..+|.++.+.|++++|++.++++++.+ |++. .++..+|.+|.+.|++++|.+.++++++++|++...
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA-------NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 11377889999999999999999999999997 8877 999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+.++
T Consensus 587 ~~~l~~~ 593 (597)
T 2xpi_A 587 SDLLKRA 593 (597)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.3e-13 Score=118.60 Aligned_cols=104 Identities=18% Similarity=0.107 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..++..|++++|++.|+++++.+|++..+++.+|.+|...|++++|+++|++++++ +|.+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~----- 79 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV-----DPKYS----- 79 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 34455566666666666666666666666666666666666666666666666666666666666 55554
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++++|.++...|++++|+++|+++++++ |++.
T Consensus 80 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 113 (164)
T 3sz7_A 80 --KAWSRLGLARFDMADYKGAKEAYEKGIEAE-GNGG 113 (164)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-SSSC
T ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch
Confidence 255666666666666666666666666665 6555
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=134.27 Aligned_cols=151 Identities=18% Similarity=0.213 Sum_probs=137.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILM------------GQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~l------------g~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
++..+..+|..+...|++++|+..|+++++.+|++..++..+ |.++...|++++|+++|+++++.
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--- 286 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--- 286 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 566788999999999999999999999999999999988776 99999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
+|.++. .....+..+|.++.+.|++++|++.++++++.. |++. .++..+|.++...|++++|...++
T Consensus 287 --~p~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 287 --EPSIAE---YTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV-------NALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp --CCSSHH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --CCcchH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777653 122367789999999999999999999999997 8777 999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHhh
Q 008887 516 LAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~ 534 (550)
++++++|++...+..+..+
T Consensus 354 ~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 354 TAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHTTSSSCHHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHH
Confidence 9999999999988888753
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-13 Score=144.11 Aligned_cols=133 Identities=22% Similarity=0.266 Sum_probs=106.9
Q ss_pred cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 008887 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (550)
Q Consensus 382 ~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~ 461 (550)
.|++++|++.|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|.+. .+++++|.++..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~ 69 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----HPGHP-------EAVARLGRVRWT 69 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STTCH-------HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999 88776 378899999999
Q ss_pred hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 462 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 462 ~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+|++++|+++|+++++.+ |++. .++..+|.+|.+.|++++|++.|+++++.+|++...+..+...
T Consensus 70 ~g~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 134 (568)
T 2vsy_A 70 QQRHAEAAVLLQQASDAA-PEHP-------GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134 (568)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999998 8877 9999999999999999999999999999999999888777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=125.84 Aligned_cols=146 Identities=11% Similarity=0.061 Sum_probs=126.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++..+..+|..+...|++++|++.++++++ .+++ ..++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~~- 108 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-----DTTRL- 108 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT-
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----CcccH-
Confidence 344667899999999999999999999999 4333 456999999999999999999999999999 88776
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
. ++..+|.++...|++++|+++|+++++.. |.+. .++..+|......+++++|++.++++++.+|+
T Consensus 109 ~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 109 D------MYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDP-------KVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp H------HHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred H------HHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2 77889999999999999999999999997 8877 99999994444456999999999999999999
Q ss_pred cHHHHHHHHhh
Q 008887 524 YNELLEQLENN 534 (550)
Q Consensus 524 ~~~~~~~l~~~ 534 (550)
+...+..+...
T Consensus 175 ~~~~~~~~~~~ 185 (272)
T 3u4t_A 175 IYIGYLWRARA 185 (272)
T ss_dssp CHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 98876666553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=149.21 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=127.0
Q ss_pred HHcCCCCChHHHHHHHH--------hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 380 LSKGDKERPIPLLQLAL--------NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL--------~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
...|++++|++.+++++ +.+|++..+++.+|.+|...|++++|++.|+++++. +|++. .+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~a 469 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-----VGWRW-------RL 469 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCCH-------HH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CcchH-------HH
Confidence 78899999999999999 899999999999999999999999999999999999 88886 38
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
++++|.++..+|++++|++.|+++++.+ |++. .+++++|.+|.+.|++++ ++.|+++++++|++..++.++
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~-------~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 470 VWYRAVAELLTGDYDSATKHFTEVLDTF-PGEL-------APKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCS-------HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence 8899999999999999999999999998 9888 999999999999999999 999999999999999988887
Q ss_pred HhhH
Q 008887 532 ENND 535 (550)
Q Consensus 532 ~~~~ 535 (550)
..+.
T Consensus 541 g~~~ 544 (681)
T 2pzi_A 541 ARAR 544 (681)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=128.61 Aligned_cols=144 Identities=16% Similarity=0.072 Sum_probs=123.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..++.+|..+...|++++|++.+++ |++..++..+|.++.+.|++++|++.++++++. +|.+... .
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~--~ 167 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATLT--Q 167 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH--H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHHH--H
Confidence 566778999999999999999999988 899999999999999999999999999999999 7665411 0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
+..+ +...+...|++++|++.|+++++.. |+++ .++..+|.++.+.|++++|++.++++++.+|++.++
T Consensus 168 l~~a---~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~-------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 168 LATA---WVSLAAGGEKLQDAYYIFQEMADKC-SPTL-------LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHH---HHHHHHCTTHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHH---HHHHHhCchHHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 1011 1123335589999999999999997 8887 999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+.++...
T Consensus 237 l~~l~~~ 243 (291)
T 3mkr_A 237 LINLVVL 243 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-13 Score=116.98 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+.+.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|.++ .
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~--- 87 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-----DINEP-R--- 87 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT-H---
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc-H---
Confidence 44566799999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+++++|.++...|++++|++.|+++++.. |+++
T Consensus 88 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 120 (142)
T 2xcb_A 88 ---FPFHAAECHLQLGDLDGAESGFYSARALA-AAQP 120 (142)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCG
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCc
Confidence 77899999999999999999999999997 8776
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=111.41 Aligned_cols=122 Identities=13% Similarity=0.082 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+.++|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|++++++++++ +|.+.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~----- 72 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFV----- 72 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcH-----
Confidence 35677899999999999999999999999999999999999999999999999999999999999 88876
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~ 503 (550)
.+++++|.++...|++++|++.|+++++.+ |+.. ..+....++..++.+..+
T Consensus 73 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 73 --RAYIRKATAQIAVKEYASALETLDAARTKD-AEVN-NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHH-TTTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCHHHHHHHHHHHHHhC-cccC-CchhHHHHHHHHHHHHHh
Confidence 378899999999999999999999999985 3211 011222667777766654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=111.14 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=87.5
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 398 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.++.++..++.+|.++...|++++|+.+|+++++. +|.+. .+++++|.++...|++++|++.++++++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667778888888888888888888888888887 66665 2667788888888888888888888888
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----cHHHHHHHHh
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ-----YNELLEQLEN 533 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~-----~~~~~~~l~~ 533 (550)
.+ |++. .+++.+|.+|...|++++|+..|+++++++|+ .......+..
T Consensus 72 ~~-p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 72 LD-GQSV-------KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp HC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred hC-chhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHH
Confidence 76 7666 77888888888888888888888888887776 5555555554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-12 Score=125.30 Aligned_cols=154 Identities=17% Similarity=0.164 Sum_probs=129.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+++++++++. +|.+......
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 128 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS-----QPQYEQLGSV 128 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----STTTTTC---
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccHHHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999998877 4443211100
Q ss_pred H------------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 448 L------------------------------------------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 448 l------------------------------------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
+ ..++..+|.++...|++++|++.++++++.. |++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~- 206 (327)
T 3cv0_A 129 NLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDA- 206 (327)
T ss_dssp -----------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-
T ss_pred HhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcH-
Confidence 0 1367789999999999999999999999987 8777
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.++..+|.++...|++++|...++++++.+|++...+..+...
T Consensus 207 ------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 207 ------QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999988877766553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-13 Score=118.39 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|++++++ +|.++ .
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~-~--- 90 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----DIXEP-R--- 90 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT-H---
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc-h---
Confidence 45566799999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+++++|.++...|++++|++.|+++++.. |+++
T Consensus 91 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 123 (148)
T 2vgx_A 91 ---FPFHAAECLLQXGELAEAESGLFLAQELI-ANXP 123 (148)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCG
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCC
Confidence 78899999999999999999999999997 7766
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=116.57 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=65.5
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
++.++..++.+|.++...|++++|+++|++++++ +|.+. .+++++|.++...|++++|+++|++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANP-------IYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455677888888888888888888888888888 77665 26777888888888888888888888888
Q ss_pred CCCCCccccccchhHHHHHHHHHH
Q 008887 479 KEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 479 ~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
+ |++. .+++.+|.+|.
T Consensus 75 ~-p~~~-------~~~~~lg~~~~ 90 (164)
T 3sz7_A 75 D-PKYS-------KAWSRLGLARF 90 (164)
T ss_dssp C-TTCH-------HHHHHHHHHHH
T ss_pred C-CCCH-------HHHHHHHHHHH
Confidence 7 7766 67777777764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=109.38 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=111.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 80 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-----DPAYS----- 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----CccCH-----
Confidence 44566799999999999999999999999999999999999999999999999999999999999 77775
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 507 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~ 507 (550)
.+++.+|.++...|++++|+++++++++.. |++. .++..+|.++...|++
T Consensus 81 --~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~-------~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 81 --KAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNE-------TYKSNLKIAELKLREA 130 (131)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccch-------HHHHHHHHHHHHHhcC
Confidence 277889999999999999999999999997 8777 8999999999999875
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-12 Score=124.67 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+.+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+++++++++. +|.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----- 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI----- 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCCH-----
Confidence 33467799999999999999999999999999999999999999999999999999999999999 77776
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc---------------------------------------
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA--------------------------------------- 488 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~--------------------------------------- 488 (550)
.++..+|.++...|++++|++.++++++.. |.+.....
T Consensus 90 --~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 90 --AVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 277789999999999999999999999886 65542221
Q ss_pred ---cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 489 ---HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 489 ---~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
....++..+|.+|...|++++|.+.++++++.+|++...+..+...
T Consensus 167 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215 (327)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 1356788999999999999999999999999999998877766553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-13 Score=122.93 Aligned_cols=149 Identities=15% Similarity=0.078 Sum_probs=118.2
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH---------H
Q 008887 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI---------D 446 (550)
Q Consensus 376 a~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~---------~ 446 (550)
+......|++++|.+.++...+..+.....+..+|..+...|++++|+++|+++++. .|.++... .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF-----FIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCTTCCCHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HhcccccchhhHHHHHHH
Confidence 344566778888888877777666777888999999999999999999999999998 66655110 1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
....+++++|.++...|++++|+++++++++.+ |++. .+++.+|.+|...|++++|+..|+++++++|++..
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV-------KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 112378899999999999999999999999997 8777 99999999999999999999999999999999999
Q ss_pred HHHHHHhhHHH
Q 008887 527 LLEQLENNDEE 537 (550)
Q Consensus 527 ~~~~l~~~~~~ 537 (550)
++..+......
T Consensus 158 ~~~~l~~~~~~ 168 (198)
T 2fbn_A 158 IRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888774433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=133.43 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=126.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~----- 94 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-----KMDFT----- 94 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCcH-----
Confidence 45667799999999999999999999999999999999999999999999999999999999999 77775
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc---cccccc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP---KSKAHY-----YDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~---~~~~~~-----~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.++..+|.++...|++++|++.|+++++.. |++. ...... ...+..+|.++...|++++|+..++++++
T Consensus 95 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 95 --AARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 378889999999999999999999999997 7543 111111 11244557778888888888888888888
Q ss_pred cCCCcHHHHHHHHh
Q 008887 520 HNPQYNELLEQLEN 533 (550)
Q Consensus 520 ~~p~~~~~~~~l~~ 533 (550)
.+|++...+..+..
T Consensus 172 ~~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 172 VCVWDAELRELRAE 185 (450)
T ss_dssp HCTTCHHHHHHHHH
T ss_pred hCCCChHHHHHHHH
Confidence 88877776665554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-12 Score=114.18 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=102.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc---CCCCChhh---HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLA---GHPTEPEA---IDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~---~~p~~~~~---~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~a 475 (550)
.+..+..+|..++..|+|++|+.+|+++++..... .+|.+++. .+....+++++|.|+...|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 35678889999999999999999999999873111 12322210 1222248889999999999999999999999
Q ss_pred hcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHhh
Q 008887 476 GNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN-ELLEQLENN 534 (550)
Q Consensus 476 l~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~-~~~~~l~~~ 534 (550)
++++ |++. .+++.+|.+|..+|++++|+..|+++++++|++. .....+...
T Consensus 90 l~~~-p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 90 LKRE-ETNE-------KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHS-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HhcC-Ccch-------HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9998 8887 9999999999999999999999999999999999 566666663
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=122.70 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH---HHHHHHHHHHH------------------cCCHHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQ------------------KGLLEEAVEYLE 427 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~---a~~~lg~~~~~------------------~g~~~eA~~~~~ 427 (550)
++.++.+|..++..|++++|++.|+++++.+|++.. +++.+|.++.. .|++++|+..|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 467789999999999999999999999999999864 88999999986 579999999999
Q ss_pred HHHHHhhhcCCCCChhhHHHHH----------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHH
Q 008887 428 CAISKLFLAGHPTEPEAIDLLI----------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL 497 (550)
Q Consensus 428 ~al~l~~~~~~p~~~~~~~~l~----------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~L 497 (550)
++++. +|+++....... ...+.+|.++...|++++|+..|+++++.. |+++ ...+++..+
T Consensus 121 ~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~----~~~~a~~~l 190 (225)
T 2yhc_A 121 KLVRG-----YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQ----ATRDALPLM 190 (225)
T ss_dssp HHHTT-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSH----HHHHHHHHH
T ss_pred HHHHH-----CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCC----ccHHHHHHH
Confidence 99999 888774322111 123578999999999999999999999997 8765 334789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 498 ASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 498 a~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
|.+|.++|++++|++.++++....|+..+
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999998887654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=119.41 Aligned_cols=132 Identities=12% Similarity=0.029 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----------------NALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~----------------~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+..+..+|..++..|++++|+..|+++++..|+++ .++.++|.+|...|++++|+.+++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566899999999999999999999999999887 89999999999999999999999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHH-
Q 008887 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE- 511 (550)
Q Consensus 433 ~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~- 511 (550)
+|.+. .+++.+|.++...|++++|+++|+++++.+ |++. .++..++.++...|+.+++.
T Consensus 118 -----~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 118 -----DKNNV-------KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNL-------DIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp -----STTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHHHHHC---
T ss_pred -----CcccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 88776 378899999999999999999999999998 8887 99999999999999888887
Q ss_pred HHHHHHHHc
Q 008887 512 KYLRLAAAH 520 (550)
Q Consensus 512 ~~l~~al~~ 520 (550)
..+.+.+..
T Consensus 178 ~~~~~~f~~ 186 (198)
T 2fbn_A 178 LTFGGMFDK 186 (198)
T ss_dssp ---------
T ss_pred HHHHHHhcc
Confidence 455555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=129.25 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=126.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+..+|..++..|++++|+..|+++++.+|+++.+++++|.+|...|++++|++.+++++++ +|.+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~----- 72 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSV----- 72 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 56778899999999999999999999999999999999999999999999999999999999999 88776
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccccc------------------------chhHHHHHHHHHHh
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH------------------------YYDGLVVLASALCN 503 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~------------------------~~~~~~~La~~~~~ 503 (550)
.+++++|.++...|++++|++.|+++++.+ |++...... .......++.. .
T Consensus 73 --~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~ 147 (281)
T 2c2l_A 73 --KAHFFLGQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--I 147 (281)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--H
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--H
Confidence 378899999999999999999999999987 755322111 11222233333 3
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 504 VGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 504 ~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.|++++|++.++++++.+|++......+..
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 177 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQAC 177 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHH
Confidence 689999999999999999998776665544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-12 Score=136.37 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+...+..++..+...|++++|++.|+++++.+|++..++..+|.+|.+.|++++|+++|+++++. +|.++
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~----- 475 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQYDP----- 475 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCCH-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh-----
Confidence 55677789999999999999999999999999999999999999999999999999999999998 77766
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.++..+|.++.+.|++++|++.|+++++.. |+.+.+......++..+|.+|.+.|++++|++.++++++.+|++...
T Consensus 476 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 476 --LLLNELGVVAFNKSDMQTAINHFQNALLLV-KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 277889999999999999999999999874 32111111224799999999999999999999999999999999988
Q ss_pred HHHHHhhH
Q 008887 528 LEQLENND 535 (550)
Q Consensus 528 ~~~l~~~~ 535 (550)
+..+..+.
T Consensus 553 ~~~l~~~~ 560 (597)
T 2xpi_A 553 HTAIALVY 560 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=124.89 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=117.6
Q ss_pred HHcCCCCChHHHHHHHHhhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHH
Q 008887 380 LSKGDKERPIPLLQLALNKE----PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL~~~----p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~l 455 (550)
...|++++|+..|+++++.. |+++.+++.+|.++...|++++|+++|+++++. +|.+. . +++.+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~-~------~~~~l 83 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDMP-E------VFNYL 83 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH-H------HHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCCcH-H------HHHHH
Confidence 34578999999999999973 567889999999999999999999999999999 88776 2 78889
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 456 g~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
|.++...|++++|+++|+++++.. |++. .++..+|.+|...|++++|...++++++.+|++....
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLELD-PTYN-------YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcC-cccc-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999999999997 8877 9999999999999999999999999999999987533
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=109.94 Aligned_cols=102 Identities=25% Similarity=0.191 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.++.+|..+...|++++|+..|+++++. +|.+. .+++.+|.++...|++++|++.|+++++++ |++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK-----EPERE-------EAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDI 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 4678899999999999999999999999 88877 378889999999999999999999999998 8887
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 485 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 485 ~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.++..+|.+|...|++++|+..++++++.+|++..
T Consensus 86 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 86 -------AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 89999999999999999999999999999998754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-13 Score=141.36 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=121.5
Q ss_pred HcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh--------hHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE--------AIDLLIVAS 452 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~--------~~~~l~~a~ 452 (550)
..+++++|++.++++++.+|+++.+++.+|.+++..|+|++|+.+|++++++ +|.+.. .......++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-----LEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HTTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----hcccccCChHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999 666520 111223488
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
+++|.|+.++|++++|+++|+++++++ |++. .+++.+|.+|..+|++++|+..|+++++++|++..++..+.
T Consensus 321 ~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 321 LNLAMCYLKLREYTKAVECCDKALGLD-SANE-------KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999998 8877 99999999999999999999999999999999998887776
Q ss_pred hhHH
Q 008887 533 NNDE 536 (550)
Q Consensus 533 ~~~~ 536 (550)
.+..
T Consensus 393 ~~~~ 396 (457)
T 1kt0_A 393 MCQK 396 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=109.34 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
..+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|+++ .
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~-~------ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI-A------ 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-H------
Confidence 46789999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+++++|.++...|++++|++.++++++.+ |++.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~ 119 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQ-PQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCC
Confidence 78899999999999999999999999997 7654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=102.15 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+..++.+|..+...|++++|+++|+++++. +|.+. .+++.+|.++...|++++|++.++++++.. |+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNH-------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PD 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cc
Confidence 345566666666666666666666666666 55444 145556666666666666666666666665 55
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+. .++..+|.++...|++++|.+.++++++.+|++...+..+..
T Consensus 71 ~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 71 WG-------KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp CH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred cH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44 566666666666666666666666666666666665555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=102.15 Aligned_cols=114 Identities=18% Similarity=0.066 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++. +|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWG------ 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CcccH------
Confidence 4577799999999999999999999999999999999999999999999999999999999999 77766
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
.+++.+|.++...|++++|++.++++++.. |++. .++..++.+..
T Consensus 73 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~l~~~~~ 117 (118)
T 1elw_A 73 -KGYSRKAAALEFLNRFEEAKRTYEEGLKHE-ANNP-------QLKEGLQNMEA 117 (118)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH-------HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCH-------HHHHHHHHhhc
Confidence 277889999999999999999999999998 8777 78888877653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-12 Score=109.54 Aligned_cols=124 Identities=17% Similarity=0.066 Sum_probs=106.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
.++..++.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+.++++++++ +|.+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---- 77 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSV---- 77 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH----
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhH----
Confidence 367788899999999999999999999999999999999999999999999999999999999999 88776
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
.+++.+|.++...|++++|++.|+++++.. |++... ....+...+..+..+..
T Consensus 78 ---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~--~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 78 ---KAHFFLGQCQLEMESYDEAIANLQRAYSLA-KEQRLN--FGDDIPSALRIAKKKRW 130 (137)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCC--CTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHC-hhHHHH--HHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999987 652211 11256666666655443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.3e-12 Score=107.49 Aligned_cols=116 Identities=17% Similarity=0.157 Sum_probs=106.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
.|.+..+++.+|.++...|++++|+++|+++++. +|.+. .+++.+|.++...|++++|+++++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDA-------KLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCH-------HHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4667899999999999999999999999999999 77765 37788999999999999999999999999
Q ss_pred CCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 479 KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 479 ~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
. |++. .++..+|.++...|++++|++.++++++.+|++...+..+...
T Consensus 80 ~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 127 (133)
T 2lni_A 80 E-PTFI-------KGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127 (133)
T ss_dssp C-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred C-CCch-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7 8777 8999999999999999999999999999999999888877763
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=113.81 Aligned_cols=146 Identities=13% Similarity=0.037 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..+..+|..+...|++++|+.+++++++..+.. ..++..+|.++...|++++|+++++++++.... ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~- 83 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-----LK- 83 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----hC-
Confidence 355689999999999999999999999975432 258899999999999999999999999998422 11
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.......++.++|.++...|++++|+++++++++.. +.. .+......++..+|.+|...|++++|.+.+++++++...
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 112223478899999999999999999999999874 222 122344578999999999999999999999999987544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-11 Score=120.57 Aligned_cols=148 Identities=11% Similarity=0.022 Sum_probs=107.7
Q ss_pred CChHHHHHHHHHHHH-------cCCC-------CChHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008887 367 LTPKELIALSVKFLS-------KGDK-------ERPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 367 l~~~~l~~la~~~~~-------~g~~-------~~A~~~~~~aL~-~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
.+++.++..|..+.. .|++ ++|...|+++++ .+|++..+|..+|.++...|++++|.+.|+++++
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 467777777776653 4776 788888888888 6888888888888888888888888888888888
Q ss_pred HhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH-hcCCHHHH
Q 008887 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC-NVGRNAEA 510 (550)
Q Consensus 432 l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~-~~g~~~eA 510 (550)
. +|.++.. +|.++|.++.+.|++++|++.|+++++.. |... ..+...+.... ..|++++|
T Consensus 128 ~-----~p~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~-------~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 128 I-----EDIDPTL------VYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH-------HVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp S-----SSSCTHH------HHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCT-------HHHHHHHHHHHHTSCCHHHH
T ss_pred c-----cccCccH------HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCH-------HHHHHHHHHHHHHcCCHHHH
Confidence 7 6766521 56677888888888888888888888876 6544 55554444432 25777777
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHh
Q 008887 511 EKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 511 ~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+..|+++++.+|++..++..+..
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~ 211 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHH
Confidence 77777777777777666655443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=107.29 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=61.2
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
+.+...++.+|..+...|++++|+++|+++++. +|.+... ..+++++|.++...|++++|+++++++++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQ----AVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHH----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 344444555555555555555555555555444 3332100 1244455555555555555555555555554
Q ss_pred CCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 480 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 480 ~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|++. .+++.+|.+|...|++++|...|+++++++|++...+..+.+
T Consensus 96 -~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 96 -GGDV-------KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp -SCCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred -ccCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 5444 555556666666666666666666666666655555554444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-12 Score=125.27 Aligned_cols=160 Identities=13% Similarity=0.014 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHc-CCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 370 KELIALSVKFLSK-GDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 370 ~~l~~la~~~~~~-g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
..+.++|..+... |++++|+.+|+++++..|++ ..++..+|.++...|++++|+.+|++++++ +|.+.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~ 192 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-----SMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TSSCT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----HhcCC
Confidence 3566999999996 99999999999999987754 567899999999999999999999999999 66655
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 008887 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC--NVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~--~~g~~~eA~~~l~~al~~ 520 (550)
........++.++|.++..+|++++|+.+|+++++++ |+...... ...+..++.++. ..+++++|+..|++++.+
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~--~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED-PNFADSRE--SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 2211122367789999999999999999999999997 87652221 234566777775 567899999999999999
Q ss_pred CCCcHHHHHHHHhhHHH
Q 008887 521 NPQYNELLEQLENNDEE 537 (550)
Q Consensus 521 ~p~~~~~~~~l~~~~~~ 537 (550)
+|.+...+..+.+..++
T Consensus 270 ~~~~~~~~~~~k~~~~~ 286 (292)
T 1qqe_A 270 DKWKITILNKIKESIQQ 286 (292)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99998888888775544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-11 Score=102.40 Aligned_cols=117 Identities=25% Similarity=0.367 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
...++.+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+.+++++++. +|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA------ 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccH------
Confidence 5567799999999999999999999999999999999999999999999999999999999999 77765
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
.+++.+|.++...|++++|+++++++++.. |++. .++..+|.++.+.|
T Consensus 78 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~g 125 (125)
T 1na0_A 78 -EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNA-------EAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHhcc
Confidence 267789999999999999999999999997 8877 89999999987765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-13 Score=144.52 Aligned_cols=132 Identities=13% Similarity=0.076 Sum_probs=116.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
..+|..+...|++++|+++|+++++.+|++..+++++|.+|.+.|++++|++++++++++ +|.+. .++
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~-------~~~ 77 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI-------KGY 77 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCH-------HHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCH-------HHH
Confidence 356777889999999999999999999999999999999999999999999999999999 88776 378
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA--LCNVGRNAEAEKYLR-----------LAAA 519 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~--~~~~g~~~eA~~~l~-----------~al~ 519 (550)
+++|.++..+|++++|++.|+++++.+ |++. .++..++.+ +.+.|++++|++.++ ++++
T Consensus 78 ~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~ 149 (477)
T 1wao_1 78 YRRAASNMALGKFRAALRDYETVVKVK-PHDK-------DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT 149 (477)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCT-------THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcc
Confidence 899999999999999999999999998 8887 888899988 889999999999999 7777
Q ss_pred cCCCc
Q 008887 520 HNPQY 524 (550)
Q Consensus 520 ~~p~~ 524 (550)
++|++
T Consensus 150 ~~~~~ 154 (477)
T 1wao_1 150 IEDEY 154 (477)
T ss_dssp CCTTC
T ss_pred ccccc
Confidence 77654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=131.87 Aligned_cols=138 Identities=19% Similarity=0.250 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~ 452 (550)
..+|..+...|++++|++.++++++.+|+ ..++..+|.++...|++++|+++++++++. +|.++ .++
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~ 313 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL-----NPEYP-------PTY 313 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----CTTCH-------HHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc-----CCCCH-------HHH
Confidence 34444555555555555555555555554 445555555555555555555555555554 44333 134
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 453 QWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 453 ~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
..+|.++...|++++|++.|+++++.. |++. .++..+|.++...|++++|...++++++.+|++...+..+
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 384 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSLN-PENV-------YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 445555555555555555555555544 4444 4455555555555555555555555555555444444333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-11 Score=104.14 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+++.+|..+...|++++|++.|+++++. +|.++... .+++.+|.++...|++++|++.|+++++.. |++.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTP----NALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCc
Confidence 4677888888888888888888888888 67665321 266678888888888888888888888886 7662
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 485 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 485 ~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
....+++.+|.+|...|++++|+..|+++++..|++.........
T Consensus 74 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 74 ----KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp ----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 122778888888888888888888888888888888776554444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-12 Score=134.20 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=123.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++. +|.+......
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~ 417 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL-----EEVQEKIHVG 417 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHCSSCSST
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----CCcchhhHHH
Confidence 45667788888889999999999999999988988888999999999999999999999998888 3333311111
Q ss_pred HHHHHHHHHHHHHHh----------cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQ----------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 448 l~~a~~~lg~~~~~~----------g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+ ..++.+|.++... |++++|++.|+++++.. |++. .++..+|.+|...|++++|.+.|+++
T Consensus 418 ~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 418 I-GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSE-------QAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp T-HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 1355678899999 99999999999999997 8877 89999999999999999999999999
Q ss_pred HHcCCCcHHHHHHH
Q 008887 518 AAHNPQYNELLEQL 531 (550)
Q Consensus 518 l~~~p~~~~~~~~l 531 (550)
++++|+..+....+
T Consensus 489 l~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 489 AILARTMDEKLQAT 502 (537)
T ss_dssp HHHC--CHHHHHHH
T ss_pred HHhCCCcHHHHHHH
Confidence 99999998866544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=103.80 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=106.4
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 398 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.+|.+...+..+|.++...|++++|+++++++++. +|.+. .+++.+|.++...|++++|++.++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANA-------VYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 34567789999999999999999999999999999 77765 3778899999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.. |++. .++..+|.++...|++++|...++++++.+|++...+..+...
T Consensus 75 ~~-~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 123 (131)
T 2vyi_A 75 ID-PAYS-------KAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123 (131)
T ss_dssp HC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cC-ccCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 97 8777 8999999999999999999999999999999999888877663
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-11 Score=100.21 Aligned_cols=116 Identities=26% Similarity=0.372 Sum_probs=103.4
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 399 EPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 399 ~p~~-~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
+|.. ..+++.+|.++...|++++|+++++++++. +|.+. .+++.+|.++...|++++|+..++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555 788999999999999999999999999999 77665 2677899999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
.. |.+. ..+..+|.++...|++++|...++++++.+|++...+..+...
T Consensus 72 ~~-~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 72 LD-PNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hC-CccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 87 8776 8999999999999999999999999999999999988877663
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-12 Score=133.00 Aligned_cols=152 Identities=16% Similarity=0.087 Sum_probs=132.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.++....
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~- 410 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL-----ENKLDGIYV- 410 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHTSSSCSS-
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----hhccchHHH-
Confidence 56677789999999999999999999999999999999999999999999999999999999998 554432100
Q ss_pred HHHHHHHHHHHHHH---hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 448 LIVASQWSGVACIR---QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 448 l~~a~~~lg~~~~~---~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
...+++.+|.++.. .|++++|++.++++++.. |++. .++..+|.+|.+.|++++|...|+++++++|++
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSE-------QAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 00267789999999 999999999999999997 8777 899999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 008887 525 NELLEQLEN 533 (550)
Q Consensus 525 ~~~~~~l~~ 533 (550)
.+.+..+.-
T Consensus 483 ~~~~~~~~~ 491 (514)
T 2gw1_A 483 EEKLQAITF 491 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998776643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=130.29 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=136.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++++++++. +|.++ .
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~--- 373 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-----FPEAP-E--- 373 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-----STTCS-H---
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cccCH-H---
Confidence 56677899999999999999999999999999999999999999999999999999999999999 77776 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN---VGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~---~g~~~eA~~~l~~al~~~p~~ 524 (550)
+++.+|.++...|++++|++.++++++.. |++.... ....++..+|.++.. .|++++|...++++++.+|++
T Consensus 374 ---~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 374 ---VPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIY-VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCS-SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHH-HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 77789999999999999999999999987 6664111 112499999999999 999999999999999999999
Q ss_pred HHHHHHHHhh
Q 008887 525 NELLEQLENN 534 (550)
Q Consensus 525 ~~~~~~l~~~ 534 (550)
...+..+...
T Consensus 449 ~~~~~~la~~ 458 (514)
T 2gw1_A 449 EQAKIGLAQM 458 (514)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887776654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-12 Score=122.17 Aligned_cols=148 Identities=17% Similarity=0.078 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
+..+..+|..+...|++++|+.+++++++. +|....++..+|.+|...|++++|+++++++++.......+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445669999999999999999999999986 366678999999999999999999999999999854444454
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
++.. ..++.++|.++...|++++|+++++++++........+......++..+|.+|...|++++|...+++++++
T Consensus 123 ~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 123 HPDV----AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CHHH----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4433 247788999999999999999999999987200001111234588999999999999999999999999987
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=131.75 Aligned_cols=139 Identities=8% Similarity=0.045 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----------------NALILMGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-----------------~a~~~lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
+..+..+|..++..|++++|+..|+++++.+|++. .+++++|.+|.+.|++++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556899999999999999999999999999877 4899999999999999999999999999
Q ss_pred HhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH-HHhcCCHHHH
Q 008887 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA-LCNVGRNAEA 510 (550)
Q Consensus 432 l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~-~~~~g~~~eA 510 (550)
+ +|.+. .+++++|.++..+|++++|+++|+++++++ |++. .++..++.+ ....++.+++
T Consensus 259 ~-----~p~~~-------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~-------~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 259 E-----EEKNP-------KALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDK-------AIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp H-----CTTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred h-----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 9 88776 388899999999999999999999999998 8887 888889988 4566778899
Q ss_pred HHHHHHHHHcCCCcHHH
Q 008887 511 EKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 511 ~~~l~~al~~~p~~~~~ 527 (550)
...|++++..+|++...
T Consensus 319 ~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp -----------------
T ss_pred HHHHHHhhCCCCCCCCC
Confidence 99999999999887643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.4e-12 Score=103.14 Aligned_cols=106 Identities=25% Similarity=0.245 Sum_probs=86.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
+|++..+++.+|.++...|++++|+.+++++++. +|.+. .+++++|.++...|++++|+++++++++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEES-------KYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5777788888888888888888888888888888 66665 26677888888888888888888888888
Q ss_pred CCCC--CccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCc
Q 008887 479 KEPE--EPKSKAHYYDGLVVLASALCNV-GRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 479 ~~p~--~~~~~~~~~~~~~~La~~~~~~-g~~~eA~~~l~~al~~~p~~ 524 (550)
. |. +. .++..+|.++... |++++|++++++++..+|+.
T Consensus 70 ~-~~~~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 70 I-EDEYNK-------DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp S-CCTTCH-------HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred C-cccchH-------HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 6 76 55 7888888888888 88888888888888887764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=131.32 Aligned_cols=130 Identities=10% Similarity=0.099 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
+..+.++|..++..|++++|+..|+++++.+|++ ..+++++|.+|.+.|++++|+.+|++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 3456699999999999999999999999999998 699999999999999999999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008887 434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 513 (550)
Q Consensus 434 ~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~ 513 (550)
+|.+. .+++++|.+|..+|++++|+..|+++++++ |++. .++..++.++...|++++|...
T Consensus 347 ----~p~~~-------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~-------~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 347 ----DSANE-------KGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNK-------AARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCccH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 388999999999999999999999999998 8887 8999999999999999988754
Q ss_pred -HHHHH
Q 008887 514 -LRLAA 518 (550)
Q Consensus 514 -l~~al 518 (550)
+++.+
T Consensus 408 ~~~~~f 413 (457)
T 1kt0_A 408 IYANMF 413 (457)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 44433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=104.95 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+.++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+++|+++++. +|+++...
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~- 76 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKAA- 76 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHH-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcccH-
Confidence 3567899999999999999999999999999998 89999999999999999999999999999 88774211
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
.+++.+|.++...|++++|++.|+++++.. |++. .+...+..+....
T Consensus 77 ---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~-------~~~~a~~~l~~l~ 123 (129)
T 2xev_A 77 ---GGLLKLGLSQYGEGKNTEAQQTLQQVATQY-PGSD-------AARVAQERLQSIR 123 (129)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTSH-------HHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCh-------HHHHHHHHHHHHH
Confidence 377889999999999999999999999997 8776 5555555444433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-11 Score=115.08 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=103.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH----------------HHHHHHHhcCH
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW----------------SGVACIRQEKW 465 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~----------------lg~~~~~~g~~ 465 (550)
+++.+...|..+...|++++|+.+|+++++. +|.++ .++++ +|.++...|++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL-----NIDRT-------EMYYWTNVDKNSEISSKLATELALAYKKNRNY 70 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CHHHH-------HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCh-------HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCH
Confidence 5677889999999999999999999999999 66554 25666 99999999999
Q ss_pred HHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 466 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 466 ~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
++|++.|+++++.+ |++. .++..+|.+|...|++++|+..|+++++++|++..++..+...
T Consensus 71 ~~A~~~~~~al~~~-p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 71 DKAYLFYKELLQKA-PNNV-------DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999998 9888 9999999999999999999999999999999999988877654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=110.31 Aligned_cols=115 Identities=10% Similarity=0.039 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NIN-----ALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~-------~~~-----a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~ 436 (550)
...+.+.|..++..|++++|+..|+++++.+|+ +.. +|.++|.++...|+|++|+.+|++++++.-..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456679999999999999999999999999999 444 99999999999999999999999999881000
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 437 ~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
..-+|+....+..+++++|.++..+|++++|++.|+++++++ |++..
T Consensus 91 -~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~-p~d~~ 137 (159)
T 2hr2_A 91 -GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI-EERKG 137 (159)
T ss_dssp -CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCCS
T ss_pred -ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHH
Confidence 011132322222233999999999999999999999999998 88773
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-11 Score=105.73 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=106.4
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
.+...++.+|..++..|++++|+++|+++++.+|++ ..+++.+|.+|...|++++|+++++++++. +|.+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~- 99 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-----DGGDV- 99 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TSCCH-
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CccCH-
Confidence 367788899999999999999999999999999998 899999999999999999999999999999 78775
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~ 503 (550)
.+++.+|.++...|++++|+++|+++++.. |++. .++..++.+..+
T Consensus 100 ------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~ 145 (148)
T 2dba_A 100 ------KALYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNK-------VFQEALRNISGP 145 (148)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCH-------HHHHHHHHHHCS
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH-------HHHHHHHHHHhh
Confidence 377889999999999999999999999997 8777 778777776544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-12 Score=116.73 Aligned_cols=147 Identities=10% Similarity=-0.029 Sum_probs=119.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHh------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALN------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~------~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
.+..+..+|..+...|++++|+.+++++++ ..+....++..+|.++...|++++|++++++++++.... +.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 102 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL--PED 102 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--Ccc
Confidence 455677999999999999999999999999 344567889999999999999999999999999985322 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+ .....+++++|.++...|++++|+++++++++.. +.. .+......++..+|.++...|++++|.+++++++++.
T Consensus 103 ~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 103 P---LAASANAYEVATVALHFGDLAGARQEYEKSLVYA-QQA-DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp H---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-Hhc-cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 1222478899999999999999999999999763 211 1122334667899999999999999999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=113.26 Aligned_cols=133 Identities=14% Similarity=0.036 Sum_probs=115.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL-QKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+++.++.+|..+...|++++|+..++++++.+| ++..+..++.+.. ..++..+|++.++++++. +|+++ .
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-----~P~~~-~-- 109 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA-----NPDNF-E-- 109 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----STTCH-H--
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh-----CCCCH-H--
Confidence 677888999999999999999999999999999 8877777775543 334445689999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+++++|.++...|++++|++.|+++++.+ |+.. ...++..+|.++...|+.++|...|++++.
T Consensus 110 ----~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~-----~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 110 ----LACELAVQYNQVGRDEEALELLWNILKVN-LGAQ-----DGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTTT-----TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccC-----hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 78899999999999999999999999997 7642 116899999999999999999999999875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.7e-12 Score=128.63 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhh---CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNK---EP---DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~---~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
..|..+...|++++|+.+|+++++. .+ ..+.+++.+|.+|...|++++|++++++++++. +........
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~ 182 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY-----KEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTCSTTHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HhCccchHH
Confidence 4899999999999999999999996 23 356889999999999999999999999999994 333321233
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA-----HN- 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~-----~~- 521 (550)
...++.++|.++...|++++|+++|+++++.. +.. .+......++.++|.+|...|++++|+.+++++++ .+
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-EAE-KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHc-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 34588899999999999999999999999885 332 22334557899999999999999999999999999 34
Q ss_pred CCcHHHHHHHHh
Q 008887 522 PQYNELLEQLEN 533 (550)
Q Consensus 522 p~~~~~~~~l~~ 533 (550)
|.....+..+..
T Consensus 261 ~~~~~~~~~l~~ 272 (383)
T 3ulq_A 261 PSLPQAYFLITQ 272 (383)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 555555555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=121.82 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=115.9
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+.+|..+...|++++|+..++++++..+.. ..+++.+|.+|...|++++|+.+|+++++.... .+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~--~~~~~--- 192 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA--LHDNE--- 192 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCCCH---
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--cCccc---
Confidence 3478888999999999999999999865433 568999999999999999999999999966321 33332
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH-HHHHHHHHHcC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA-EKYLRLAAAHN 521 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA-~~~l~~al~~~ 521 (550)
.....+++++|.+|..+|++++|+++++++++.. + +..+......+++++|.+|..+|++++| ..++++++.+.
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~-~-~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-C-RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H-HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH-H-hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1111378899999999999999999999999874 2 2223334568999999999999999999 88899998764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=113.74 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+++.++.+|..+...|++++|+++|+++++ ++++.+++.+|.+|.. .+++++|+++|+++++. + ++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~--~~- 74 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----N--YS- 74 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T--CH-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----C--CH-
Confidence 455666777777777777777777777776 6667777777777777 77777777777777766 2 22
Q ss_pred hHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLR 515 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~~~l~ 515 (550)
.+++++|.++.. .+++++|+++|+++++.+ ++ .++..+|.+|.. .|++++|+.+|+
T Consensus 75 ------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~-------~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 75 ------NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YA-------EGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp ------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------HHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred ------HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---Cc-------cHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 256667777777 777777777777777653 22 667777777777 777777777777
Q ss_pred HHHHcC
Q 008887 516 LAAAHN 521 (550)
Q Consensus 516 ~al~~~ 521 (550)
++++.+
T Consensus 139 ~a~~~~ 144 (273)
T 1ouv_A 139 KACDLN 144 (273)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 777654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=118.60 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
...+..+|..+...|++++|+++++++++. +|....++..+|.+|...|++++|+++++++++.......+.
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 446679999999999999999999999997 467788999999999999999999999999999854444444
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC-------------------------------------
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE------------------------------------- 483 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~------------------------------------- 483 (550)
++... .++.++|.++...|++++|+++++++++.. +..
T Consensus 165 ~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 165 DPNVA----KTKNNLASCYLKQGKYQDAETLYKEILTRA-HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp CHHHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred CHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 44322 477789999999999999999999999762 110
Q ss_pred -----ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 484 -----PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 484 -----~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+.....++..+|.+|...|++++|..+++++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 01223456789999999999999999999999998753
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=121.17 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=125.5
Q ss_pred ChHHHH-HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELI-ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~-~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
+++++. ..|..+...|+|++|.+.|+.++..+|++. +++.+|.++.+.|+|++|+.+|+++... + ++.
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~------~-d~~--- 168 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW------P-DKF--- 168 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC------S-CHH---
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc------C-Ccc---
Confidence 555554 889999999999999999999999999998 9999999999999999999999877544 1 121
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
.-..+++++|.++..+|++++|+.+|++++.. +.++. ...++++++|.|+.++|+.++|...|++++..+|+ .+
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g--~~~P~---~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDS--PAGEA---CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--TTTTT---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC--CCCcc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 11137889999999999999999999999865 32221 13479999999999999999999999999999999 88
Q ss_pred HHHHHHh
Q 008887 527 LLEQLEN 533 (550)
Q Consensus 527 ~~~~l~~ 533 (550)
+...|..
T Consensus 243 ~~~aL~~ 249 (282)
T 4f3v_A 243 VAAALKD 249 (282)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 8877765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=123.46 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..+.++|..+...|++++|+.+|+++++..+. ...++..+|.+|.. |++++|+++|++++++. +...
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~-----~~~~- 149 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF-----ENEE- 149 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH-----HHTT-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH-----HhCC-
Confidence 35568999999999999999999999997532 24678899999999 99999999999999993 2221
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.......++.++|.++..+|++++|+++|+++++.. ++... .......+..+|.++...|++++|..+|++++ ++|+
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY-KEMEN-YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 112223478899999999999999999999999985 44331 22234578899999999999999999999999 9987
Q ss_pred cHH
Q 008887 524 YNE 526 (550)
Q Consensus 524 ~~~ 526 (550)
+..
T Consensus 227 ~~~ 229 (307)
T 2ifu_A 227 FSG 229 (307)
T ss_dssp STT
T ss_pred CCC
Confidence 653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.2e-12 Score=112.06 Aligned_cols=119 Identities=19% Similarity=0.093 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNK------------------EPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~------------------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
+..+.+.|..++..|++++|+..|+++++. +|.+..+++++|.+|...|++++|+.++++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456679999999999999999999999998 77778999999999999999999999999999
Q ss_pred HHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 431 ~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
++ +|.+. .+++.+|.++...|++++|++.|+++++++ |++. ..+...++.+....++
T Consensus 91 ~~-----~p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p~~~------~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 91 KR-----EETNE-------KALFRRAKARIAAWKLDEAEEDLKLLLRNH-PAAA------SVVAREMKIVTERRAE 147 (162)
T ss_dssp HH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGH------HHHHHHHHHHHHHHHH
T ss_pred hc-----CCcch-------HHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CCCH------HHHHHHHHHHHHHHHH
Confidence 99 88887 388899999999999999999999999997 7654 1335566666554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=103.86 Aligned_cols=123 Identities=18% Similarity=0.138 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.++.+|..+...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+.+++++++. +|.++......
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-----GRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-----ccccchhHHHH
Confidence 4567799999999999999999999999999999999999999999999999999999999999 44432222222
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
..+++.+|.++...|++++|+++|+++++.. | +. .....++.++...+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~-~~-------~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH-R-TP-------DVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-CH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C-CH-------HHHHHHHHHHHHHH
Confidence 3478899999999999999999999999986 5 45 67777777766544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-11 Score=101.10 Aligned_cols=119 Identities=9% Similarity=0.090 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 401 ~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
+.+..++.+|.++...|++++|+.+|+++++. +|.+. .+++.+|.++...|++++|+++++++++..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 68 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNM-------TYITNQAAVYFEKGDYNKCRELCEKAIEVG- 68 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccH-------HHHHHHHHHHHHhccHHHHHHHHHHHHhhc-
Confidence 34678899999999999999999999999999 77765 377889999999999999999999999987
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|.+..+......+++.+|.+|...|++++|.+.++++++.+| +......+..
T Consensus 69 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 120 (131)
T 1elr_A 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120 (131)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 655333322358999999999999999999999999999998 4666666666
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=121.38 Aligned_cols=141 Identities=16% Similarity=0.096 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+|..+...|++++|+.+|+++++..+.. ..++.++|.+|...|++++|+.+|+++++..... +.+ ...
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~---~~~ 194 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDN---EEF 194 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCC---HHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccc---hhH
Confidence 58888888899999999999999964332 3478999999999999999999999999874221 112 223
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-NAEAEKYLRLAAAHN 521 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-~~eA~~~l~~al~~~ 521 (550)
...+++++|.+|.++|++++|+++++++++.. +.. .+......+++.+|.+|..+|+ +++|.++|++++.+.
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-CRI-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHc-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 33488999999999999999999999999875 322 2333456899999999999995 699999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-11 Score=125.87 Aligned_cols=151 Identities=20% Similarity=0.070 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK---------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~---------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
....+|..+...|++++|++.|++|+++ +|....++.++|.+|...|++++|+.++++++++.....++.+
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3447999999999999999999999985 5777889999999999999999999999999998655444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH---hcCCHHHHHHHHHH
Q 008887 442 PEAIDLLIVASQWSGVACIRQ--EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC---NVGRNAEAEKYLRL 516 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~--g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~---~~g~~~eA~~~l~~ 516 (550)
.... ..+.++|.++... ++|++|+++|+++++++ |+++ +++..+|.++. ..|+.++|++.+++
T Consensus 133 ~~~~----~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~-------~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 133 IESP----ELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNP-------EFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp CCCH----HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred hhhH----HHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 3222 2555678777665 57999999999999998 9888 88888887754 56778899999999
Q ss_pred HHHcCCCcHHHHHHHHh
Q 008887 517 AAAHNPQYNELLEQLEN 533 (550)
Q Consensus 517 al~~~p~~~~~~~~l~~ 533 (550)
+++++|++...+..+..
T Consensus 201 al~l~p~~~~~~~~l~~ 217 (472)
T 4g1t_A 201 AIRLNPDNQYLKVLLAL 217 (472)
T ss_dssp HHHHCSSCHHHHHHHHH
T ss_pred HhhcCCcchHHHHHHHH
Confidence 99999999887766543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-11 Score=118.07 Aligned_cols=146 Identities=9% Similarity=-0.027 Sum_probs=118.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~-a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++..+..+|..+...|++++|.+.|+++++.+|+++. +|..+|.++...|++++|++.|+++++. +|... .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~-~-- 169 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTRH-H-- 169 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTCCT-H--
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCCH-H--
Confidence 4556678999999999999999999999999999887 8999999999999999999999999988 66554 2
Q ss_pred HHHHHHHHHHHHHHH-hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC
Q 008887 447 LLIVASQWSGVACIR-QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH---NP 522 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~-~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~---~p 522 (550)
.+...+..... .|++++|++.|+++++.. |+++ .+|..+|..+.+.|++++|+..|+++++. .|
T Consensus 170 ----~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 170 ----VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP-------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp ----HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCH-------HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 33334444322 699999999999999987 8777 89999999999999999999999999995 45
Q ss_pred C-cHHHHHHHHh
Q 008887 523 Q-YNELLEQLEN 533 (550)
Q Consensus 523 ~-~~~~~~~l~~ 533 (550)
+ ....+..+..
T Consensus 238 ~~~~~l~~~~~~ 249 (308)
T 2ond_A 238 EKSGEIWARFLA 249 (308)
T ss_dssp GGCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3 5556555433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=126.54 Aligned_cols=155 Identities=12% Similarity=0.009 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.+..|..+...|++++|+.+|+++++.. +..+.+++.+|.+|...|++++|+.++++++++. +......
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-----~~~~~~~ 178 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY-----QNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTSTTCH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-----HhCCCch
Confidence 3478999999999999999999999863 2356789999999999999999999999999993 3322112
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----c
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA-----H 520 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~-----~ 520 (550)
.....++.++|.++...|++++|+++|+++++.. +.. .+......++.++|.+|...|++++|+.+++++++ .
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 256 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-MDI-QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV 256 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHc-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 2334588899999999999999999999999874 221 12224557899999999999999999999999999 6
Q ss_pred CCCcHHHHHHHHh
Q 008887 521 NPQYNELLEQLEN 533 (550)
Q Consensus 521 ~p~~~~~~~~l~~ 533 (550)
+|........+..
T Consensus 257 ~~~~~~~~~~la~ 269 (378)
T 3q15_A 257 PDLLPKVLFGLSW 269 (378)
T ss_dssp GGGHHHHHHHHHH
T ss_pred ChhHHHHHHHHHH
Confidence 6666555555554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=126.47 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~-------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+..+..+|..+...|++++|+.+++++++..+. ...++..+|.+|...|++++|++++++++++. +..
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~ 217 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-----EAE 217 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----HHc
Confidence 446679999999999999999999999997433 34689999999999999999999999999994 222
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
. .......+++++|.++..+|++++|++++++++++. ... .+.+....++..+|.+|...|++++|..++++++++.
T Consensus 218 ~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 218 K-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF-EES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT-TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-Hhh-ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 2 222333488899999999999999999999999953 111 1112345899999999999999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=120.26 Aligned_cols=160 Identities=20% Similarity=0.220 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
.+.+..+|..+...|++++|+.+++++++. ++....++..+|.+|...|++++|+++++++++.......+.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456679999999999999999999999994 667788999999999999999999999999998842221133
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC-ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE-PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~-~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
++. ...++..+|.++...|++++|+++++++++.. ... ..+......++..+|.++...|++++|+++++++++
T Consensus 107 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 107 HPA----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp CHH----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ChH----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332 22478889999999999999999999999873 100 011124458899999999999999999999999999
Q ss_pred c--------CCCcHHHHHHHHh
Q 008887 520 H--------NPQYNELLEQLEN 533 (550)
Q Consensus 520 ~--------~p~~~~~~~~l~~ 533 (550)
. +|.....+..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 8 4544444554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=104.35 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=81.1
Q ss_pred HcCCCCChHHHHHHHHhh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNK---EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~ 457 (550)
..|++++|+.+|+++++. +|++..+++.+|.+|...|++++|+++|+++++. +|.++ .+++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQ-------ALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCch-------HHHHHHHH
Confidence 468999999999999999 6899999999999999999999999999999999 88886 37889999
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
++...|++++|++.++++++.. |+++
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~-p~~~ 95 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAET-SDDE 95 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH-CCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 9999999999999999999997 8776
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=130.81 Aligned_cols=152 Identities=13% Similarity=0.022 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~-----~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
...+.+..+..+|+|++|+.+++++|+. .+++ ...+.++|.+|..+|+|++|+.++++++++....-.+++|
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 4456777888999999999999999984 3444 5678999999999999999999999999998777788887
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
... ..++++|.+|..+|++++|+.+|++|+++.....+.+|+...+....++.++.++|++++|...|+++.+..-
T Consensus 391 ~~a----~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 391 QLG----MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 432 4778999999999999999999999998764556677778889999999999999999999999999876544
Q ss_pred CcHH
Q 008887 523 QYNE 526 (550)
Q Consensus 523 ~~~~ 526 (550)
++..
T Consensus 467 ~~~~ 470 (490)
T 3n71_A 467 NNQP 470 (490)
T ss_dssp TC--
T ss_pred cCCC
Confidence 4443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=125.57 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHh----------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALN----------------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~----------------~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~ 433 (550)
..+..+|..++..|++++|++.|+++++ .+|.+..+++++|.+|.+.|++++|++++++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 3456899999999999999999999999 77888999999999999999999999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008887 434 FLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 513 (550)
Q Consensus 434 ~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~ 513 (550)
+|.+. .+++.+|.++..+|++++|++.|+++++++ |++. .++..++.++...++++++.+.
T Consensus 303 ----~p~~~-------~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~-------~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 ----DPSNT-------KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDK-------AIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp ----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----CchhH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 88776 388899999999999999999999999998 8887 8999999999999998888754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.6e-11 Score=110.77 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=123.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG----LLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g----~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+++..+.+|..+...+++++|+.+|+++.+. +++.+++.+|.+|.. + ++++|+++|+++.+. .++
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-------g~~- 85 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-------GSK- 85 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-------TCH-
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-------CCH-
Confidence 7888999999999999999999999999875 689999999999998 7 999999999999665 233
Q ss_pred hHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLR 515 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~~~l~ 515 (550)
.+++++|.+|.. .+++++|+++|+++++.. +.+ ....+++.||.+|.. .+++++|+.+|+
T Consensus 86 ------~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 86 ------SGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-ESD-----AAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp ------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TSH-----HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CCc-----chHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 378899999988 899999999999999986 421 012899999999999 889999999999
Q ss_pred HHHHcCCCcHHHHHHHHhhH
Q 008887 516 LAAAHNPQYNELLEQLENND 535 (550)
Q Consensus 516 ~al~~~p~~~~~~~~l~~~~ 535 (550)
++.+. +++..+...+....
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHH
T ss_pred HHHHc-CCCHHHHHHHHHHH
Confidence 99998 55666666665543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=118.14 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
...+..+|..+...|++++|+.+++++++. ++....++..+|.+|...|++++|+++++++++.......+.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 446679999999999999999999999986 356678899999999999999999999999998842221233
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
++.. ..++.++|.++...|++++|+++++++++........+......++..+|.+|...|++++|...++++++.
T Consensus 149 ~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 149 HPDV----AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CHHH----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3322 247788999999999999999999999987211111112244588999999999999999999999999975
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-11 Score=121.64 Aligned_cols=145 Identities=12% Similarity=0.134 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~-------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~ 441 (550)
+..+..+|..+...|++++|+.+++++++..+. ...++..+|.+|...|++++|+++|++++++....
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----- 215 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----- 215 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-----
Confidence 446679999999999999999999999986432 35678899999999999999999999999984222
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
. .......+++++|.++..+|++++|+++++++++.. ... ..+....++..+|.+|.+.|++++|..++++++++.
T Consensus 216 ~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 216 Q-NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS-REK--VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHH--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-Hhh--CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1 112333488899999999999999999999999932 100 001224899999999999999999999999999985
Q ss_pred C
Q 008887 522 P 522 (550)
Q Consensus 522 p 522 (550)
+
T Consensus 292 ~ 292 (378)
T 3q15_A 292 T 292 (378)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-10 Score=102.15 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=101.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
.+..++.+|.++...|++++|+.+|+++++. +|.+. .+++++|.++...|++++|+++++++++.. |
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~ 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNA-------IYYGNRSLAYLRTECYGYALGDATRAIELD-K 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 3577899999999999999999999999999 77765 377889999999999999999999999997 8
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.+. .++..+|.++...|++++|...++++++.+|++...+..+..
T Consensus 79 ~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 79 KYI-------KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp TCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ccH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 777 899999999999999999999999999999999887654433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=120.37 Aligned_cols=134 Identities=10% Similarity=0.055 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.++.+|..+...|++++|+..++++++.+|+........+..+...++.++|++.|+++++. +|++. .
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~-----~P~~~-~--- 220 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-----NPEDA-A--- 220 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----CTTCH-H---
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-----CCccH-H---
Confidence 67788899999999999999999999999999987777888888899999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+++++|.++...|++++|++.|+++++.+ |++. ...++..++.++...|+.++|...|++++.
T Consensus 221 ---~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~-----~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 221 ---LATQLALQLHQVGRNEEALELLFGHLRXD-LTAA-----DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGG-----GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccc-----cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 88899999999999999999999999997 8761 128999999999999999999999999876
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-10 Score=114.47 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=98.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
|.++..++.+|..+...|++++|+++|+++++. +|.+. .+++++|.++...|++++|++.++++++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 567889999999999999999999999999999 88876 378899999999999999999999999998
Q ss_pred CCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 480 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 480 ~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
|++. .+++.+|.+|..+|++++|+..|+++++++|++
T Consensus 69 -p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 69 -GQSV-------KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp -TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 8877 999999999999999999999999999999865
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.22 E-value=8.6e-11 Score=116.35 Aligned_cols=144 Identities=13% Similarity=-0.040 Sum_probs=115.9
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhCCCChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN------ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~------a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
+.+.+..+...|++++|+..++++++..+.+.. .+..+|.++...|++++|+.+++++++. .+......
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~-----~~~~~~~~ 152 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-----QLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT-----CCCCSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----hcccccHH
Confidence 346688899999999999999999998776655 3346899999999999999999999997 33333221
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
....++.++|.+|..+|++++|+++|+++++.. ...+.+......+++++|.+|.++|++++|+.++++++++.+
T Consensus 153 -~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 153 -QNLYIENAIANIYAENGYLKKGIDLFEQILKQL-EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 222378899999999999999999999999643 222223345567999999999999999999999999998763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-10 Score=109.10 Aligned_cols=138 Identities=13% Similarity=0.076 Sum_probs=102.4
Q ss_pred ChHHHHHHHHHHHH----cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 368 ~~~~l~~la~~~~~----~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
++...+.+|..+.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+++|+++++. +
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~- 144 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-----N- 144 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T-
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----C-
Confidence 55667788888888 88888888888888876 377888888888888 88888888888888776 2
Q ss_pred CChhhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAE 511 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~ 511 (550)
+. .+++++|.++.. .+++++|+++|+++++.. + + .+++.+|.+|.. .+++++|+
T Consensus 145 -~~-------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~--~-------~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 145 -DG-------DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-D--S-------PGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp -CH-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C--H-------HHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred -cH-------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-C--H-------HHHHHHHHHHHcCCCCCccHHHHH
Confidence 11 266678888877 788888888888887764 1 2 677788888888 88888888
Q ss_pred HHHHHHHHcCCCcHHHHHHHHh
Q 008887 512 KYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 512 ~~l~~al~~~p~~~~~~~~l~~ 533 (550)
++++++++.++ ......+..
T Consensus 207 ~~~~~a~~~~~--~~a~~~l~~ 226 (273)
T 1ouv_A 207 ARYSKACELEN--GGGCFNLGA 226 (273)
T ss_dssp HHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhCCC--HHHHHHHHH
Confidence 88888877755 444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=115.78 Aligned_cols=143 Identities=13% Similarity=-0.034 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
.+...+..+...|++++|++.++++++..+... ..++.+|.++...|++++|+++++++++. .+.....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~ 151 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-----QLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT-----CCCSSCT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----HhcCCch
Confidence 345778889999999999999999999887654 34677999999999999999999999987 3332211
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC--CCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK--EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~--~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
. ....+++++|.+|..+|++++|+++|+++++.. .+++. .....+++++|.+|..+|++++|+.++++++++.+
T Consensus 152 ~-~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 152 Y-QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE---EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp T-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 123488899999999999999999999999542 03221 11226899999999999999999999999998753
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=119.20 Aligned_cols=122 Identities=12% Similarity=0.136 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh---------hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP---------EAIDLLIVASQWSGVACIRQEKWEEGIAHLE 473 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~---------~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~ 473 (550)
+..+..+|..+...|++++|+++|+++++.. +..+ ........+++++|.++.++|++++|+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-----EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-----hcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4668899999999999999999999999852 1100 0111223488899999999999999999999
Q ss_pred HHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHHH
Q 008887 474 RIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 474 ~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~~ 537 (550)
++++.+ |++. .+++.+|.+|..+|++++|++.|+++++++|++..++..+..+...
T Consensus 298 ~al~~~-p~~~-------~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 298 EALEID-PSNT-------KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHTTC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-chhH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999998 8777 9999999999999999999999999999999999988888774433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.6e-11 Score=96.90 Aligned_cols=104 Identities=17% Similarity=0.108 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC--ChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT--EPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~--~~~~~ 445 (550)
+++.++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++++++++. +|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~--- 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----IEDEYNK--- 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCH---
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccchH---
Confidence 34456689999999999999999999999999999999999999999999999999999999999 777 54
Q ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHhcCCCCCCc
Q 008887 446 DLLIVASQWSGVACIRQ-EKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~-g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++.+|.++... |++++|+++++++++.. |.++
T Consensus 77 ----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 111 (112)
T 2kck_A 77 ----DVWAAKADALRYIEGKEVEAEIAEARAKLEH-HHHH 111 (112)
T ss_dssp ----HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC-CCCC
T ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc-cCCC
Confidence 3778899999999 99999999999999997 6543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.4e-11 Score=106.21 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=91.0
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHhcCCCCCC
Q 008887 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW----------EEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 414 ~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~----------~eA~~~~~~al~~~~p~~ 483 (550)
.+.++|++|++.+++++++ +|.+. ++++++|.++...+++ ++|+..|+++++++ |++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----~P~~a-------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~ 79 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----NPLDA-------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhHHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCc
Confidence 3567899999999999999 89888 3888899999998875 59999999999998 988
Q ss_pred ccccccchhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 484 PKSKAHYYDGLVVLASALCNVG-----------RNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g-----------~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
. ++++++|.+|..+| ++++|+++|+++++++|++..+++.++..
T Consensus 80 ~-------~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 80 D-------EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp H-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8 99999999999875 89999999999999999999998887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=122.43 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..+..+|..+...|++++|+.+++++++..++.. .++..+|.+|...|++++|+++++++++.. +...
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~- 261 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-----RQLK- 261 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTT-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-----HhCc-
Confidence 3556899999999999999999999999765443 389999999999999999999999999983 2222
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
.......++..+|.++...|++++|+++++++++.. +... +......++..+|.+|...|++++|.+++++++++.
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QELN-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-HhcC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 122223478899999999999999999999999875 3321 223345789999999999999999999999999874
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-11 Score=122.78 Aligned_cols=151 Identities=15% Similarity=0.068 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
...+..+|..+...|++++|+.+++++++..++.. .++..+|.+|...|++++|+++++++++.. +...
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~ 297 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA-----VELG 297 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----HHTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH-----HHcC
Confidence 34566999999999999999999999999776433 388999999999999999999999999983 2222
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
.......++..+|.++...|++++|+++++++++.. +.. .+......++..+|.+|...|++++|.+++++++++.+
T Consensus 298 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 298 -EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA-QEL-GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHC-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 112223478899999999999999999999999875 322 12233457899999999999999999999999999987
Q ss_pred CcHHH
Q 008887 523 QYNEL 527 (550)
Q Consensus 523 ~~~~~ 527 (550)
.....
T Consensus 375 ~~~~~ 379 (411)
T 4a1s_A 375 XXXXX 379 (411)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 66543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.8e-11 Score=99.31 Aligned_cols=100 Identities=20% Similarity=0.119 Sum_probs=84.0
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHH
Q 008887 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494 (550)
Q Consensus 415 ~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~ 494 (550)
..|++++|+.+|+++++. ++.++... .+++++|.++..+|++++|+++|+++++.+ |+++ .++
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~ 64 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLA----ECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQ-------ALR 64 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCch-------HHH
Confidence 468999999999999988 54444332 478899999999999999999999999998 8887 999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 495 VVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
+.+|.++...|++++|+..++++++.+|++.......
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999999999998765533
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.4e-11 Score=117.32 Aligned_cols=147 Identities=12% Similarity=0.041 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
..+..+|..+...|++++|+.+++++++..+.. ..++..+|.++...|++++|+++++++++.. +...
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~- 257 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-----RQLK- 257 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTT-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----Hhhc-
Confidence 355689999999999999999999999865432 3488999999999999999999999999983 2222
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.......++..+|.++...|++++|+++++++++.. +... +......++..+|.+|...|++++|..++++++++.++
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 122223478889999999999999999999999874 3221 22234568999999999999999999999999998765
Q ss_pred c
Q 008887 524 Y 524 (550)
Q Consensus 524 ~ 524 (550)
.
T Consensus 336 ~ 336 (338)
T 3ro2_A 336 V 336 (338)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.8e-11 Score=119.20 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=115.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
..|..+...|++++|+..|+++++..+. ...++..+|.+|...|++++|+.+|++++++....+++ ..
T Consensus 41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~------~~ 114 (307)
T 2ifu_A 41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP------DT 114 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH------HH
Confidence 5678899999999999999999997643 25688999999999999999999999999994322211 12
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
...++.++|.+|.. |++++|+++|++++++. +... +......++.++|.+|.++|++++|+.+|++++++.+++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~-~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF-ENEE-RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH-HhCC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 23478899999998 99999999999999986 4321 112235789999999999999999999999999986543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=119.50 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=121.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
....++.+|..++..|++++|+.+|+++++.+|++. .++..+|.+|...|++++|++++++++++....++
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 121 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND----- 121 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-----
Confidence 344667899999999999999999999999999987 58899999999999999999999999988432211
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-----------------
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR----------------- 506 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~----------------- 506 (550)
......++..+|.++...|++++|+++++++++.. +. ..+......++..+|.+|...|+
T Consensus 122 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 122 -RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA-RQ-LGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH-HTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HH-hhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 12223478899999999999999999999999884 22 11223455799999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 008887 507 NAEAEKYLRLAAAHN 521 (550)
Q Consensus 507 ~~eA~~~l~~al~~~ 521 (550)
+++|++++++++++.
T Consensus 199 ~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 199 LTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-12 Score=126.42 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=92.2
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh----------HHHHHHHHHHHHHHHHHhcCHHHHH
Q 008887 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA----------IDLLIVASQWSGVACIRQEKWEEGI 469 (550)
Q Consensus 400 p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~----------~~~l~~a~~~lg~~~~~~g~~~eA~ 469 (550)
++.+..++.+|..+...|++++|+.+|+++++. +|.+... ......+++++|.++.++|++++|+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~ 250 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-----MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-----SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445677999999999999999999999999999 5544310 0001127889999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 470 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 470 ~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
++|+++++.+ |++. .+++++|.+|..+|++++|+..|+++++++|++..++..+...
T Consensus 251 ~~~~~al~~~-p~~~-------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 251 GHCNIVLTEE-EKNP-------KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHC-TTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999998 8777 9999999999999999999999999999999999988877763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-10 Score=118.91 Aligned_cols=147 Identities=19% Similarity=0.085 Sum_probs=119.4
Q ss_pred ChHHHHHHHHHHHH--cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 368 TPKELIALSVKFLS--KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ---KGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 368 ~~~~l~~la~~~~~--~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~---~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.++...+.|..+.. .+++++|+++|+++++.+|+++.++..+|.++.. .++.++|++.+++++++ +|.+.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-----~p~~~ 209 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-----NPDNQ 209 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH-----CSSCH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc-----CCcch
Confidence 34455567765554 4579999999999999999999999999988654 57778999999999999 88877
Q ss_pred hhHHHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVAC----IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~----~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
. ++..+|..+ ...|++++|+++++++++.+ |... .++..+|.+|...|++++|+..+++++
T Consensus 210 -~------~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 210 -Y------LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVT-------DVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp -H------HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -H------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHH-------HHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 2 444555544 45678899999999999997 8777 899999999999999999999999999
Q ss_pred HcCCCcHHHHHHHHhh
Q 008887 519 AHNPQYNELLEQLENN 534 (550)
Q Consensus 519 ~~~p~~~~~~~~l~~~ 534 (550)
+.+|++...+.++...
T Consensus 275 ~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 275 EYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHSTTCHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHH
Confidence 9999999988777543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-09 Score=91.82 Aligned_cols=110 Identities=25% Similarity=0.337 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
.+++.+|.++...|++++|++.++++++. +|.+. .+++.+|.++...|++++|++.++++++.. |.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSA-------EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRS 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcch-------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCc
Confidence 57889999999999999999999999998 77665 267789999999999999999999999987 776
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
. ..+..+|.++...|++++|.+.++++++.+|++...+..+..
T Consensus 69 ~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 69 A-------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp H-------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred h-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 6 889999999999999999999999999999998887766654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=9e-11 Score=104.22 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=83.4
Q ss_pred HHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL----------EEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~----------~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
.+.+++++|++.++++++.+|+++++++++|.++...+++ ++|+..|++|+++ +|++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~------- 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKD------- 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcH-------
Confidence 4556789999999999999999999999999999999876 5999999999999 88887
Q ss_pred HHHHHHHHHHHHhc-----------CHHHHHHHHHHHhcCCCCCCc
Q 008887 450 VASQWSGVACIRQE-----------KWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 450 ~a~~~lg~~~~~~g-----------~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++++|.+|..+| ++++|+++|++|++++ |++.
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~-P~~~ 125 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ-PDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC-CCCH
Confidence 38999999999885 8999999999999998 8653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=117.34 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=120.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
....++..|..+...|++++|+.+|+++++.+|++. .++..+|.++...|++++|+.++++++++....++
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 82 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD----- 82 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-----
Confidence 455778999999999999999999999999999984 67899999999999999999999999988432211
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-----------------
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR----------------- 506 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~----------------- 506 (550)
......++..+|.++...|++++|+++++++++.. +... +......++..+|.+|...|+
T Consensus 83 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 83 -QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-RELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT-CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred -cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hhcc-cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 12223478899999999999999999999999885 4322 122345689999999999999
Q ss_pred ---HHHHHHHHHHHHHc
Q 008887 507 ---NAEAEKYLRLAAAH 520 (550)
Q Consensus 507 ---~~eA~~~l~~al~~ 520 (550)
+++|...+++++++
T Consensus 160 ~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=113.65 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
...++..|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+++++++++.....++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD------ 78 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc------
Confidence 3466789999999999999999999999999998 477889999999999999999999999988432211
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC------------------
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR------------------ 506 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~------------------ 506 (550)
......++..+|.++...|++++|++.++++++.. +... +......++..+|.+|...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-RELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHhc-CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 12223478889999999999999999999999875 4332 222334688999999999999
Q ss_pred --HHHHHHHHHHHHHc
Q 008887 507 --NAEAEKYLRLAAAH 520 (550)
Q Consensus 507 --~~eA~~~l~~al~~ 520 (550)
+++|.+.+++++.+
T Consensus 157 ~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 157 NALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99999999988765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.2e-10 Score=102.62 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=96.0
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh-----
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP----- 442 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~----- 442 (550)
++..++.+|..+...|++++|++.|+++++.+|++..+++.+|.+|...|++++|+++|+++++. .|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~ 110 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ-----LRGNQLIDYK 110 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCSEEECG
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCccHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999998 66543
Q ss_pred -----hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 443 -----EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 443 -----~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
..... ..+++++|.++...|++++|++.|+++++.. |++.
T Consensus 111 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 155 (213)
T 1hh8_A 111 ILGLQFKLFA-CEVLYNIAFMYAKKEEWKKAEEQLALATSMK-SEPR 155 (213)
T ss_dssp GGTBCCEEEH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CSGG
T ss_pred HhccccCccc-hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-cccc
Confidence 11111 1378899999999999999999999999997 7543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.5e-10 Score=100.04 Aligned_cols=105 Identities=12% Similarity=0.139 Sum_probs=97.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT-QLQKGLL--EEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~-~~~~g~~--~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
-++..++.+|..+...|++++|+..|+++++.+|++..++..+|.+ +...|++ ++|+.+++++++. +|.+.
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~~- 115 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL-----DSNEI- 115 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-----CTTCH-
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-----CCCcH-
Confidence 4677888999999999999999999999999999999999999999 8899999 9999999999999 88776
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++.+|.++...|++++|++.|+++++.. |++.
T Consensus 116 ------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 149 (177)
T 2e2e_A 116 ------TALMLLASDAFMQANYAQAIELWQKVMDLN-SPRI 149 (177)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTS
T ss_pred ------HHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCc
Confidence 277889999999999999999999999998 8765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-09 Score=115.64 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=121.6
Q ss_pred CCChHHHHHHHHHHHH-------cCCCC-------ChHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 366 NLTPKELIALSVKFLS-------KGDKE-------RPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~-------~g~~~-------~A~~~~~~aL~-~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
..+++.++..|..+.. .|+++ +|.+.|+++++ ..|++..+|..+|.++...|++++|.+.|++++
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3467778888888876 79987 89999999997 799999999999999999999999999999999
Q ss_pred HHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH-HHhcCCHHH
Q 008887 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA-LCNVGRNAE 509 (550)
Q Consensus 431 ~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~-~~~~g~~~e 509 (550)
+. +|.++. .+|..+|.++.+.|++++|++.|+++++.. |... ..+...+.+ +...|++++
T Consensus 349 ~~-----~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~-------~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 349 AI-----EDIDPT------LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH-------HVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HS-----SSSCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCT-------HHHHHHHHHHHHHTCCHHH
T ss_pred Cc-----cccCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCch-------HHHHHHHHHHHHHcCChhH
Confidence 98 777652 267788888888999999999999999885 5443 455555544 446888888
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 510 AEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 510 A~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|...|+++++.+|++...+..+..
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHH
Confidence 888888888888888887766554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-10 Score=103.09 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=103.7
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
++..|++++|.+.++......+....++..+|.++...|++++|+.++++++++....++ ......++.++|.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD------HTAEHRALHQVGMV 75 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHH
Confidence 456889999999666555533467899999999999999999999999999998432211 12223478899999
Q ss_pred HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 459 CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 459 ~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+...|++++|+++++++++.. .....+......++..+|.++...|++++|..++++++++.
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELL-ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHH-HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999999999999883 22211222345789999999999999999999999998754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-09 Score=101.92 Aligned_cols=142 Identities=11% Similarity=0.100 Sum_probs=118.3
Q ss_pred ChHHHHHHHHHHHHcC----CCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 368 TPKELIALSVKFLSKG----DKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g----~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
++...+.+|..|.. + ++++|+.+|+++.+ ++++.+++.+|.+|.. .+++++|+++|+++.+. ++
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~ 120 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SE 120 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TT
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CC
Confidence 56788899999988 6 89999999999965 5799999999999998 89999999999999887 33
Q ss_pred CChhhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc-C-----CHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV-G-----RNAE 509 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~-g-----~~~e 509 (550)
.+... .+++++|.+|.. .+++++|+++|+++++. +.++ .+++.||.+|... | ++++
T Consensus 121 ~~~~~-----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~-------~a~~~Lg~~y~~g~gg~~~~d~~~ 186 (212)
T 3rjv_A 121 SDAAV-----DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTG-------YAEYWAGMMFQQGEKGFIEPNKQK 186 (212)
T ss_dssp SHHHH-----HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTT-------HHHHHHHHHHHHCBTTTBCCCHHH
T ss_pred CcchH-----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCH-------HHHHHHHHHHHcCCCCCCCCCHHH
Confidence 21101 388899999999 89999999999999988 4445 7999999999864 3 8999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 510 AEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 510 A~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|+.+|+++.+.. +.++...+.+
T Consensus 187 A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 187 ALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHH
Confidence 999999999874 4555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=91.20 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=78.2
Q ss_pred CChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCH
Q 008887 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW 465 (550)
Q Consensus 386 ~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~ 465 (550)
++|++.|+++++.+|+++.+++.+|.+|...|++++|+++|+++++. +|.+. .+++++|.++...|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYS-------VAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHHcCCH
Confidence 57899999999999999999999999999999999999999999999 88776 3788999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 008887 466 EEGIAHLERIGNLKEPE 482 (550)
Q Consensus 466 ~eA~~~~~~al~~~~p~ 482 (550)
++|++.|+++++.. |.
T Consensus 70 ~~A~~~~~~al~~~-~~ 85 (115)
T 2kat_A 70 AGARQAWESGLAAA-QS 85 (115)
T ss_dssp HHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhc-cc
Confidence 99999999999986 53
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-09 Score=116.86 Aligned_cols=147 Identities=6% Similarity=-0.090 Sum_probs=132.9
Q ss_pred ChHHHHHHHHHHHHcCC----------CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhh
Q 008887 368 TPKELIALSVKFLSKGD----------KERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFL 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~----------~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~ 435 (550)
...++...+..+...|+ ++++++.++++++.+|++..+|+.++.++.+.+ ++++++++++++++.
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--- 138 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--- 138 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh---
Confidence 45566677777777777 899999999999999999999999999999999 789999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc----------
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV---------- 504 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~---------- 504 (550)
+|.+. . +|++.+.++...| .+++++++++++++.+ |.+. .+|..++.++...
T Consensus 139 --d~~N~-~------aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~-------saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 139 --DERNF-H------CWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNY-------SSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp --CTTCH-H------HHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCH-------HHHHHHHHHHHHHSCCCCSSSCC
T ss_pred --ccccc-c------HHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCc-------cHHHHHHHHHHhhcccccccccc
Confidence 88876 3 8999999999999 9999999999999998 8887 9999999998875
Q ss_pred ----CCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 505 ----GRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 505 ----g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+++++|++++.+++.++|++..+|..+.-.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 568999999999999999999999877653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-09 Score=102.72 Aligned_cols=144 Identities=8% Similarity=0.006 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHcCCCC-ChHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 371 ELIALSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~-~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
++.......+..|++. +|+++++++|..+|++..+|+..+.++...| +++++++++++++.. +|.+.
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-----nPk~y----- 103 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-----NEKNY----- 103 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-----CTTCC-----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-----CcccH-----
Confidence 4445666667788775 7999999999999999999999999999999 999999999999999 88887
Q ss_pred HHHHHHHHHHHH----HHh---cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHH--HHHHHHHHHH
Q 008887 448 LIVASQWSGVAC----IRQ---EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA--EAEKYLRLAA 518 (550)
Q Consensus 448 l~~a~~~lg~~~----~~~---g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~--eA~~~l~~al 518 (550)
.+|+..+.++ ... ++++++++.++++++.+ |++. .+|...+.++...|+++ ++.+++++++
T Consensus 104 --~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny-------~aW~~R~~vl~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 104 --QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNH-------HVWSYRKWLVDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp --HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 3888899888 666 79999999999999998 8877 99999999999999998 9999999999
Q ss_pred HcCCCcHHHHHHHHhh
Q 008887 519 AHNPQYNELLEQLENN 534 (550)
Q Consensus 519 ~~~p~~~~~~~~l~~~ 534 (550)
+.+|.+..+|.....+
T Consensus 174 ~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 174 DTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHH
Confidence 9999999988765543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-09 Score=103.61 Aligned_cols=150 Identities=9% Similarity=-0.051 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHHHHcC--CCCChHHHHHHHHhhCCCChHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHhhhcCC
Q 008887 368 TPKELIALSVKFLSKG--DKERPIPLLQLALNKEPDNINALILMGQTQ----LQK---GLLEEAVEYLECAISKLFLAGH 438 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g--~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~----~~~---g~~~eA~~~~~~al~l~~~~~~ 438 (550)
........+..+...| +++++++.+++++..+|++..+|+..+.++ ... +++++++++++++++. +
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~-----~ 140 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS-----D 140 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH-----C
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh-----C
Confidence 4445567888888888 999999999999999999999999999999 777 8999999999999999 8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC------HHHH
Q 008887 439 PTEPEAIDLLIVASQWSGVACIRQEKWE--EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR------NAEA 510 (550)
Q Consensus 439 p~~~~~~~~l~~a~~~lg~~~~~~g~~~--eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~------~~eA 510 (550)
|.+. . +|++.+.++...|+++ ++++.++++++.+ |.+- .+|...+.++...|+ ++++
T Consensus 141 pkny-~------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~-------sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 141 PKNH-H------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNN-------SAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp TTCH-H------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred CCCH-H------HHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHhccccchhhhHHHH
Confidence 8887 4 8999999999999999 9999999999998 8777 999999999999988 9999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHhhHHH
Q 008887 511 EKYLRLAAAHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 511 ~~~l~~al~~~p~~~~~~~~l~~~~~~ 537 (550)
++++++++..+|++..+|..+......
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 999999999999999999877665444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-10 Score=95.33 Aligned_cols=102 Identities=7% Similarity=0.030 Sum_probs=88.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+..+|..++..|++++|++.|+++++.+|+++.+++++|.++...|++++|++++++++++ +|.+... ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~-~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TSTAEHV-AI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSSTTSH-HH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCccHH-HH
Confidence 35677899999999999999999999999999999999999999999999999999999999999 8887422 22
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERI 475 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~a 475 (550)
...+++.+|.++...|++++|++.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 3347888999999999988888776653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=120.82 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
+.+++.+|.++...|++++|+++|+++++. +|.+. .+++++|.++.++|++++|+++++++++.+ |+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~ 72 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNA-------IYYGNRSLAYLRTECYGYALGDATRAIELD-KK 72 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 455677889999999999999999999999 88776 388899999999999999999999999998 88
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+. .+++++|.+|.++|++++|++.|+++++++|++..++..+..+
T Consensus 73 ~~-------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 73 YI-------KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp CH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77 9999999999999999999999999999999998877776553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.7e-09 Score=107.78 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
.+..+|..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+++++++++.....+++..+..
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 45588999999999999999999999865432 244788999999999999999999999998544334332311
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 445 IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 445 ~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
..++.++|.++...|++++|.++++++++.. +..... ....++..+|.++...|++++|...+++++++.
T Consensus 135 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 135 ----EFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQ--QQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGG--GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hccCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1366789999999999999999999999986 543211 244788999999999999999999999998763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-09 Score=108.43 Aligned_cols=146 Identities=15% Similarity=0.024 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-----~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
.....|..+...|++++|+..++++++..|.+. .++..+|.++...|++++|.+++++++++.. ... ..
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~-~~ 89 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR-----QHD-VW 89 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HTT-CH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-----hcC-cH
Confidence 445788899999999999999999999877553 2678999999999999999999999999842 222 11
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS-KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~-~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.....++.++|.++..+|++++|+++++++++.. +..... ......++..+|.++...|++++|..+++++++..+.
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI-NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 1222367889999999999999999999999875 322111 1234467889999999999999999999999998765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-10 Score=93.39 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
++.+++.+|.++...|++++|+++|+++++. +|.++ .+++++|.++...|++++|++.|+++++.+ |
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNP-------VGYSNKAMALIKLGEYTQAIQMCQQGLRYT-S 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-S
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 4678999999999999999999999999999 88876 378899999999999999999999999998 8
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
++... .....+++.+|.++...|++++|++.+++
T Consensus 70 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 70 TAEHV-AIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp STTSH-HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CccHH-HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 76211 11237899999999999988887765543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-08 Score=111.22 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=129.3
Q ss_pred HHHHHHHHcCCCC-ChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 374 ALSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKGL----------LEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 374 ~la~~~~~~g~~~-~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~----------~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.........|+++ +|++.++++++.+|++..+|+.++.++...|+ ++++++.++++++. +|.+.
T Consensus 33 ~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-----~pK~y 107 (567)
T 1dce_A 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSY 107 (567)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-----CCCCH
Confidence 4444566777766 57999999999999999999999999999998 99999999999999 88877
Q ss_pred hhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVACIRQE--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG-RNAEAEKYLRLAAA 519 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g--~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g-~~~eA~~~l~~al~ 519 (550)
. +|++.+.++.+.| +++++++.++++++.+ |++. .+|...+.++...| +++++.++++++++
T Consensus 108 -~------aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~-------~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 108 -G------TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNF-------HCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp -H------HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred -H------HHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccc-------cHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3 9999999999999 7799999999999998 8777 99999999999999 99999999999999
Q ss_pred cCCCcHHHHHHHHhhHHH
Q 008887 520 HNPQYNELLEQLENNDEE 537 (550)
Q Consensus 520 ~~p~~~~~~~~l~~~~~~ 537 (550)
.+|++..+|.....+...
T Consensus 173 ~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp TTCCCHHHHHHHHHHHHH
T ss_pred HCCCCccHHHHHHHHHHh
Confidence 999999999887665443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.94 E-value=7.3e-09 Score=111.34 Aligned_cols=138 Identities=8% Similarity=-0.075 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++.....+|..+...|++++|.+.|+++++.+|+++ .+|..+|.++.+.|++++|++.|+++++. .|... .
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-----~~~~~-~-- 391 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTRH-H-- 391 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----TTCCT-H--
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----cCCch-H--
Confidence 566777999999999999999999999999999986 69999999999999999999999999987 55543 1
Q ss_pred HHHHHHHHHHHH-HHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 447 LLIVASQWSGVA-CIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 447 ~l~~a~~~lg~~-~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
.+...+.. +...|++++|.+.|+++++.. |+++ .+|..++..+.+.|+.++|+..|++++..+|.++
T Consensus 392 ----~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~-------~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 392 ----VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP-------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp ----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCH-------HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred ----HHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 22233333 446899999999999999998 8887 9999999999999999999999999999876554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=106.99 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=121.4
Q ss_pred ChHHHHHHHHHHHHc-----CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcCCC
Q 008887 368 TPKELIALSVKFLSK-----GDKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 368 ~~~~l~~la~~~~~~-----g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~p 439 (550)
+++..+.+|..+... +++++|+.+|+++.+. ++..+++.+|.+|...| ++++|+++|+++++.
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~------- 360 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK------- 360 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------
Confidence 667788999999988 8999999999999876 57789999999999866 899999999999877
Q ss_pred CChhhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAE 511 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~ 511 (550)
.++ .+++++|.+|.. .+++++|+++|+++++.. ++ .+++.+|.+|.. .+++++|.
T Consensus 361 ~~~-------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~-------~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 361 GEK-------AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LS-------AAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp TCH-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------HHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCH-------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CH-------HHHHHHHHHHHcCCCCCCCHHHHH
Confidence 122 388899999999 899999999999999874 23 899999999998 89999999
Q ss_pred HHHHHHHHcCCC---cHHHHHHHHhh
Q 008887 512 KYLRLAAAHNPQ---YNELLEQLENN 534 (550)
Q Consensus 512 ~~l~~al~~~p~---~~~~~~~l~~~ 534 (550)
.+|+++++.+|+ +..+...+...
T Consensus 424 ~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 424 AWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 999999999954 77777766554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.8e-08 Score=97.36 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=128.8
Q ss_pred HHHHHHHHcCCCC-ChHHHHHHHHhhCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 374 ALSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKGL----------LEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 374 ~la~~~~~~g~~~-~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~----------~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
+........|+++ +|++++.+++..+|++..+|+..+.++...++ ++++++++++++.. +|.+.
T Consensus 34 ~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-----~PKny 108 (331)
T 3dss_A 34 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSY 108 (331)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-----CCCCH
Confidence 4455667788888 69999999999999999999999999988776 78999999999999 88887
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVACIRQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-NAEAEKYLRLAAA 519 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~--~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-~~eA~~~l~~al~ 519 (550)
. +|++.+.++...|+ +++++++++++++.+ |.+- .+|...+.++...|+ ++++++++.++++
T Consensus 109 -~------aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy-------~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 109 -G------TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNF-------HCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp -H------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -H------HHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3 89999999999994 899999999999998 8777 999999999999999 6999999999999
Q ss_pred cCCCcHHHHHHHHhhHHHH
Q 008887 520 HNPQYNELLEQLENNDEEF 538 (550)
Q Consensus 520 ~~p~~~~~~~~l~~~~~~~ 538 (550)
.+|.+..+|.....+....
T Consensus 174 ~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 174 RNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSCCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHh
Confidence 9999999998776654443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.6e-09 Score=86.33 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH
Q 008887 421 EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 500 (550)
Q Consensus 421 eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~ 500 (550)
+|++.|+++++. +|.++ . +++++|.++...|++++|++.|+++++.+ |++. .+++.+|.+
T Consensus 3 ~a~~~~~~al~~-----~p~~~-~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~ 62 (115)
T 2kat_A 3 AITERLEAMLAQ-----GTDNM-L------LRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYS-------VAWKWLGKT 62 (115)
T ss_dssp CHHHHHHHHHTT-----TCCCH-H------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCcH-H------HHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcH-------HHHHHHHHH
Confidence 578899999999 88876 3 78899999999999999999999999998 8777 899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHhhHHH
Q 008887 501 LCNVGRNAEAEKYLRLAAAHNPQY--NELLEQLENNDEE 537 (550)
Q Consensus 501 ~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~l~~~~~~ 537 (550)
|...|++++|+..|+++++++|+. ......+.....+
T Consensus 63 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 63 LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 999999999999999999998753 3444445443333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-08 Score=104.16 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHH----cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISK 432 (550)
Q Consensus 368 ~~~~l~~la~~~~~----~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l 432 (550)
+++..+.+|..|.. .+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+++|+++.+.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 33444445544444 44455555555555443 344455555555554 45555555555554433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-08 Score=101.42 Aligned_cols=149 Identities=7% Similarity=-0.096 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHcC-CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 370 KELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQK-G-LLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 370 ~~l~~la~~~~~~g-~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~-g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
......+......| +++++++.+++++..+|++..+|+.++.++... + ++++++++++++++. +|.+. .
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~-----dpkNy-~-- 160 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP-----DPKNY-H-- 160 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS-----CTTCH-H--
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-----CCCCH-H--
Confidence 34445666666666 477888888888888888888888888888777 6 777888888888777 77665 3
Q ss_pred HHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-------HHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWE--------EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-------NAEAE 511 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~--------eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-------~~eA~ 511 (550)
+|++.+.++...|.++ +++++++++++.+ |.+- .+|...+.++...++ +++++
T Consensus 161 ----AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~-------SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 161 ----TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNN-------SAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp ----HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred ----HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHhccccccchHHHHHHH
Confidence 8888888888888888 9999999999998 8777 999999999999987 79999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHhhHHHH
Q 008887 512 KYLRLAAAHNPQYNELLEQLENNDEEF 538 (550)
Q Consensus 512 ~~l~~al~~~p~~~~~~~~l~~~~~~~ 538 (550)
+++++++..+|++..+|..+.......
T Consensus 229 e~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 229 IYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998876655444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=81.05 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
+..+++.+|.++...|++++|+++|+++++. +|.+. .+++++|.++...|++++|+++++++++.+ |
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALELD-P 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3455666666666666666666666666666 55444 145556666666666666666666666665 5
Q ss_pred CCccccccchhHHHHHHHHHHhcC
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
++. .++..+|.++...|
T Consensus 75 ~~~-------~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 NNA-------EAKQNLGNAKQKQG 91 (91)
T ss_dssp TCH-------HHHHHHHHHHHHHC
T ss_pred CCH-------HHHHHHHHHHHhcC
Confidence 555 56666666665443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-08 Score=99.05 Aligned_cols=141 Identities=9% Similarity=-0.043 Sum_probs=125.2
Q ss_pred HHHHHHHHcCCC-CChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 374 ALSVKFLSKGDK-ERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 374 ~la~~~~~~g~~-~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
..-...+..+.+ ++|+++++++|..+|++..+|+.++.++...| +++++++.+++++.. +|.+. . +
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----nPKny-~------a 125 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----NLKSY-Q------V 125 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----TCCCH-H------H
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCCcH-H------H
Confidence 333444555555 57999999999999999999999999999999 599999999999999 88887 3 8
Q ss_pred HHHHHHHHHHh-c-CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcC
Q 008887 452 SQWSGVACIRQ-E-KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA--------EAEKYLRLAAAHN 521 (550)
Q Consensus 452 ~~~lg~~~~~~-g-~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~--------eA~~~l~~al~~~ 521 (550)
|+..+.++... + +++++++.++++++.+ |++. .+|...+.++...|+++ +++++++++++.+
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy-------~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNY-------HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCH-------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 99999999988 8 9999999999999998 8777 99999999999999888 9999999999999
Q ss_pred CCcHHHHHHHHhh
Q 008887 522 PQYNELLEQLENN 534 (550)
Q Consensus 522 p~~~~~~~~l~~~ 534 (550)
|.+..+|.....+
T Consensus 198 p~N~SAW~~R~~l 210 (349)
T 3q7a_A 198 GRNNSAWGWRWYL 210 (349)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999998876554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-08 Score=97.75 Aligned_cols=128 Identities=7% Similarity=-0.048 Sum_probs=117.6
Q ss_pred CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh
Q 008887 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ 462 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~ 462 (550)
+++++.++++++..+|++..+|+..+.++...+ ++++++++++++++. +|.+. . +|++.+.++...
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-----dprNy-~------AW~~R~~vl~~l 157 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNF-H------CWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-----CTTCH-H------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-----CCCCH-H------HHHHHHHHHHHh
Confidence 678999999999999999999999999999999 499999999999999 88887 3 899999999999
Q ss_pred cC-HHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCcHHH
Q 008887 463 EK-WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV--------------GRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 463 g~-~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~--------------g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
|. +++++++++++++.+ |.+. .+|..++.++... +.++++++++.+++..+|++..+
T Consensus 158 ~~~~~eel~~~~~~I~~~-p~N~-------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa 229 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRN-FSNY-------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA 229 (331)
T ss_dssp TCCHHHHHHHHHHHHHHC-SCCH-------HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred CcCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99 699999999999998 8887 9999999998877 56899999999999999999998
Q ss_pred HHHHH
Q 008887 528 LEQLE 532 (550)
Q Consensus 528 ~~~l~ 532 (550)
|..+.
T Consensus 230 W~Y~r 234 (331)
T 3dss_A 230 WFYHR 234 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-08 Score=78.52 Aligned_cols=83 Identities=28% Similarity=0.405 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+++++++++. +|.+. .
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~-~---- 78 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-E---- 78 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-H----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCH-H----
Confidence 4566799999999999999999999999999999999999999999999999999999999999 88776 2
Q ss_pred HHHHHHHHHHHHHhc
Q 008887 449 IVASQWSGVACIRQE 463 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g 463 (550)
++.++|.++...|
T Consensus 79 --~~~~l~~~~~~~g 91 (91)
T 1na3_A 79 --AKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHhcC
Confidence 6778898887664
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.3e-09 Score=107.52 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~-----~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
.+.+....+..+|++++|++.++++|+. .|++ ...+.++|.+|..+|+|++|+.+++++++.....-.+.+|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 4445566788899999999999999984 3444 5678899999999999999999999999998777778887
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
... ..++++|.+|..+|++++|+.++++|+++.....+.+|+...+++.+|+.+..++
T Consensus 369 ~~a----~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 369 VRG----VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 443 4778999999999999999999999998764555667777778888888887654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-08 Score=87.03 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=99.8
Q ss_pred CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH-
Q 008887 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR- 461 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~- 461 (550)
+++++|+++|+++.+... +.+. +|.+|...+..++|+++|+++.+.. ++ .+.+++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~~-------~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACELN-------SG-------NGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT-------CH-------HHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC-------CH-------HHHHHHHHHHHcC
Confidence 467889999999998874 4444 9999999999999999999998871 22 388899999999
Q ss_pred ---hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 008887 462 ---QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLRLAAAHNPQYNELLEQL 531 (550)
Q Consensus 462 ---~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~l 531 (550)
.+++++|+++|+++.+..+ + .+.++||.+|.. .+++++|..+|+++.+. .+..+...+
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~g~---~-------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l 135 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGLND---Q-------DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL 135 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTC---H-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHcCCC---H-------HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 8999999999999998752 3 899999999999 89999999999999987 344444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-08 Score=104.99 Aligned_cols=118 Identities=12% Similarity=-0.056 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccc
Q 008887 408 LMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (550)
Q Consensus 408 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~ 487 (550)
..+..+..+|+|++|+..+++++++....-.++++.. ...+.++|.+|..+|+|++|+.++++++++.....+.+|
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~----a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYV----LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3445567889999999999999999766666777633 247789999999999999999999999987645566777
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCcHHHHH
Q 008887 488 AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN-----PQYNELLE 529 (550)
Q Consensus 488 ~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~-----p~~~~~~~ 529 (550)
+..+..+.+||.+|..+|++++|+.+|++++++. |+++....
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 436 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD 436 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 8899999999999999999999999999998754 77776544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=82.79 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=49.3
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Q 008887 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGN 477 (550)
Q Consensus 398 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 477 (550)
.+|+++.+++.+|.+|...|++++|+++|++++++ +|.++ . +++++|.++...|++++|++.|+++++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~------a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVET-----DPDYV-G------TYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT-H------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-H------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35777777777777777777777777777777777 66665 2 666777777777777777777777776
Q ss_pred CC
Q 008887 478 LK 479 (550)
Q Consensus 478 ~~ 479 (550)
+.
T Consensus 70 l~ 71 (100)
T 3ma5_A 70 VA 71 (100)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.3e-08 Score=95.77 Aligned_cols=141 Identities=21% Similarity=0.191 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHH-----------------------------------------
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILM----------------------------------------- 409 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~l----------------------------------------- 409 (550)
.++..|.-+ ..+++++|.+.|.++++.+|+.+++|.++
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 445555554 46777777777777777777777777655
Q ss_pred ---------------------HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHH
Q 008887 410 ---------------------GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEG 468 (550)
Q Consensus 410 ---------------------g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA 468 (550)
+.++...|+|++|.+.|+.++.. + ++.. +.+.+|.++++.|++++|
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-----~---p~~~-----~~~~~a~l~~~~~r~~dA 154 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-----G---SEHL-----VAWMKAVVYGAAERWTDV 154 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-----T---CHHH-----HHHHHHHHHHHTTCHHHH
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C---CchH-----HHHHHHHHHHHcCCHHHH
Confidence 35566677777777777666444 2 2221 556678888888888888
Q ss_pred HHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-cHHHHHHH
Q 008887 469 IAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN--PQ-YNELLEQL 531 (550)
Q Consensus 469 ~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~--p~-~~~~~~~l 531 (550)
+.+|+++.+. + ++ .....+++++|.++.++|++++|+.+|++++.-. |. ..+++..+
T Consensus 155 ~~~l~~a~~~--~-d~---~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 155 IDQVKSAGKW--P-DK---FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYL 214 (282)
T ss_dssp HHHHTTGGGC--S-CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHH
T ss_pred HHHHHHhhcc--C-Cc---ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 8888776655 2 11 0112589999999999999999999999998654 54 44444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.76 E-value=6e-08 Score=95.93 Aligned_cols=147 Identities=13% Similarity=0.055 Sum_probs=113.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEP--DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
++..+..+|..+...|++++|++.+++.+..+| ++.+++...+.++.+.|+.+.|.+.+++..+. +|+.....
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~~~~ 173 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IEDTVSGD 173 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cccccccc
Confidence 445567899999999999999999999999987 89999999999999999999999999999888 44200001
Q ss_pred HHHHHHHHHHH--HHHHHhc--CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008887 446 DLLIVASQWSG--VACIRQE--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH- 520 (550)
Q Consensus 446 ~~l~~a~~~lg--~~~~~~g--~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~- 520 (550)
+. ....++ .+....| ++.+|...|+++.+.. |+.. .....+. ++.++|++++|.+.++.+++.
T Consensus 174 d~---~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~-------~~~lLln-~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 174 NE---MILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWK-------TQLGLLN-LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HH---HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHH-------HHHHHHH-HHHHHTCHHHHHHHHHHHHSHH
T ss_pred hH---HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcc-------cHHHHHH-HHHHcCCHHHHHHHHHHHHHhc
Confidence 11 222344 4466666 9999999999988875 5311 1223333 999999999999999987776
Q ss_pred ---------CCCcHHHHHHH
Q 008887 521 ---------NPQYNELLEQL 531 (550)
Q Consensus 521 ---------~p~~~~~~~~l 531 (550)
+|++++++.++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHH
Confidence 58888888554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-08 Score=87.65 Aligned_cols=111 Identities=17% Similarity=-0.012 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
..++..+|.++...|++++|+++++++++.... .. .......++.++|.++...|++++|+++++++++.. +.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~ 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-----FG-DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQ 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----hC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HH
Confidence 467899999999999999999999999998422 11 122233478899999999999999999999999875 32
Q ss_pred CccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 483 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
. .+......++..+|.++...|++++|.+.++++++..
T Consensus 82 ~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 82 L-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred h-CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2 1222345789999999999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=83.08 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNIN-ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~-a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
++.|..+...|++++|++.|+++++.+|++.. +++.+|.+|...|++++|+++|++++++ +|.+.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~-------~ 71 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPA-------L 71 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH-------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHH-------H
Confidence 57899999999999999999999999999999 9999999999999999999999999999 888772 2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+.+ +.+++++..|++++..+ |+..
T Consensus 72 ~~~--------~~~~~a~~~~~~~~~~~-p~~~ 95 (99)
T 2kc7_A 72 QAR--------KMVMDILNFYNKDMYNQ-LEHH 95 (99)
T ss_dssp HHH--------HHHHHHHHHHCCTTHHH-HCCS
T ss_pred HHH--------HHHHHHHHHHHHHhccC-cccc
Confidence 211 67788899998888776 5544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-08 Score=103.26 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=95.0
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHH
Q 008887 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494 (550)
Q Consensus 415 ~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~ 494 (550)
..|+|++|+..+++++++....-.|+++.. ...+.++|.+|..+|+|++|+.++++++++.+...+.+|+..+..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~----a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYM----LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHH----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 458999999999999999766667777633 2477899999999999999999999999876455667778899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCcHHHHH
Q 008887 495 VVLASALCNVGRNAEAEKYLRLAAAHN-----PQYNELLE 529 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~al~~~-----p~~~~~~~ 529 (550)
.+||.+|..+|++++|+.+|++++++. |+++....
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999999998864 77776554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.3e-08 Score=102.66 Aligned_cols=134 Identities=11% Similarity=0.010 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcC---CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 370 KELIALSVKFLSKG---DKERPIPLLQLALNKEPDNINALILMGQTQLQK----GLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 370 ~~l~~la~~~~~~g---~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~----g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
...+.+|..+...| ++++|+++|+++.+..+.....++.+|.+|... +++++|+++|+++. . .++
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-------g~~ 248 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-------GYP 248 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-------GST
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-------CCH
Confidence 34455555555555 555555555555555555555555555555433 45555555555543 2 111
Q ss_pred hhHHHHHHHHHHHHHH-H--HHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC-----CHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVA-C--IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG-----RNAEAEKYL 514 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~-~--~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g-----~~~eA~~~l 514 (550)
.+++++|.+ + ...+++++|+++|+++.+.. ++ .+++++|.+|. .| ++++|+.+|
T Consensus 249 -------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~-------~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 249 -------ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP-------RAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp -------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH-------HHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred -------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH-------HHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 144445544 2 23455555555555554432 12 44555555544 33 455555555
Q ss_pred HHHHHcCCCcHHHHHHHH
Q 008887 515 RLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 515 ~~al~~~p~~~~~~~~l~ 532 (550)
+++. +++..+...+.
T Consensus 311 ~~Aa---~g~~~A~~~Lg 325 (452)
T 3e4b_A 311 EKAV---GREVAADYYLG 325 (452)
T ss_dssp HTTT---TTCHHHHHHHH
T ss_pred HHHh---CCCHHHHHHHH
Confidence 5444 44444444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-08 Score=105.03 Aligned_cols=117 Identities=13% Similarity=-0.031 Sum_probs=92.7
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~-----~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
+........|+|++|+++++++|+. .|++ ...+.++|.+|..+|+|++|+.++++++++....-.|.++...
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 4444555678999999999999983 3555 4668899999999999999999999999998777788888443
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~ 494 (550)
..++++|.+|..+|++++|+.+|++|+++.....+.+|+...+..
T Consensus 383 ----~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~ 427 (433)
T 3qww_A 383 ----SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK 427 (433)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred ----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 477899999999999999999999999875333344444443333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.72 E-value=6.6e-08 Score=79.06 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=69.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 438 HPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 438 ~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+|.++ .+++.+|.++...|++++|++.|+++++.+ |++. .+++.+|.+|...|++++|++.|+++
T Consensus 3 ~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 3 DPEDP-------FTRYALAQEHLKHDNASRALALFEELVETD-PDYV-------GTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp --CCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56665 378899999999999999999999999998 9888 89999999999999999999999999
Q ss_pred HHcCCCc--HHHHHHHHhhHH
Q 008887 518 AAHNPQY--NELLEQLENNDE 536 (550)
Q Consensus 518 l~~~p~~--~~~~~~l~~~~~ 536 (550)
+++.|+. ......+.....
T Consensus 68 l~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 68 IEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHSCHHHHHHHHHHHH
T ss_pred HhhhhcCCchhHHHHHHHHHH
Confidence 9987643 344455554333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.2e-08 Score=101.78 Aligned_cols=145 Identities=10% Similarity=0.052 Sum_probs=101.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----------------NALILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-----------------~a~~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
.|...++.|..+...|++++|++.|.++++.++... .++..+|.+|...|++++|.+++++++
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355677899999999999999999999999877643 368899999999999999999999998
Q ss_pred HHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH
Q 008887 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 510 (550)
Q Consensus 431 ~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA 510 (550)
... +... ...........+|.++...|++++|++.+++++... ... ........++..+|.+|...|++++|
T Consensus 83 ~~~-----~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 83 EYM-----MQFA-KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA-KRE-KRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHH-----HTSC-HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH-HHS-SCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHH-----HHcc-chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHh-CccHHHHHHHHHHHHHHHHccChHHH
Confidence 873 2212 111111244556666666777777777777766553 211 11223445666777777777777777
Q ss_pred HHHHHHHHHc
Q 008887 511 EKYLRLAAAH 520 (550)
Q Consensus 511 ~~~l~~al~~ 520 (550)
...+++++..
T Consensus 155 ~~~l~~~~~~ 164 (434)
T 4b4t_Q 155 LALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.3e-08 Score=101.20 Aligned_cols=120 Identities=15% Similarity=-0.053 Sum_probs=98.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccccc
Q 008887 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489 (550)
Q Consensus 410 g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~ 489 (550)
..-+..+|+|++|++.+++++++....-.|+++. +...+.++|.+|..+|+|++|+++++++++......+.+|+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~----~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIY----QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchH----HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 4446678999999999999998854444556653 334788999999999999999999999998754456677778
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHh
Q 008887 490 YYDGLVVLASALCNVGRNAEAEKYLRLAAAHN-----PQYNELLEQLEN 533 (550)
Q Consensus 490 ~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~-----p~~~~~~~~l~~ 533 (550)
.+..+.+||.+|..+|++++|+.+|++++++. |+++.....+..
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 99999999999999999999999999998754 888776654433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.5e-08 Score=80.89 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccc
Q 008887 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS 486 (550)
Q Consensus 407 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~ 486 (550)
+.+|..+...|++++|++.|+++++. +|.+... +++++|.++...|++++|++.|+++++.+ |++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~-- 69 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT-----EPVGKDE------AYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSP-- 69 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHH------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTST--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcH--
Confidence 44566666666666666666666666 5555411 45566666666666666666666666665 5555
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 487 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 487 ~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.++.. +.++++...|+++...+|+
T Consensus 70 -----~~~~~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 70 -----ALQAR--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -----HHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred -----HHHHH--------HHHHHHHHHHHHHhccCcc
Confidence 33322 4455555555555555444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-07 Score=93.65 Aligned_cols=146 Identities=18% Similarity=0.111 Sum_probs=109.0
Q ss_pred CCCChHHHHHHHHHHHHcCC---CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHh-hhc
Q 008887 365 ENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGLL----EEAVEYLECAISKL-FLA 436 (550)
Q Consensus 365 ~~l~~~~l~~la~~~~~~g~---~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~----~eA~~~~~~al~l~-~~~ 436 (550)
+++++-+++-.|..++..++ +.+|+.+|++|++.+|+++.++..++.+|.....+ ......++++++.. ...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 34566777888888887765 46899999999999999999999888888632211 11222222222221 011
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 437 ~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+|.++ .++..++..+...|++++|++.++++++++ |+ . .++..+|.++.-.|++++|.+.|++
T Consensus 272 ~~~~~a-------~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s-~-------~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 272 ELNNLS-------IIYQIKAVSALVKGKTDESYQAINTGIDLE-MS-W-------LNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp GGTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC-H-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCcCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CC-H-------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 144444 256667888888899999999999999996 52 3 6888999999999999999999999
Q ss_pred HHHcCCCcHH
Q 008887 517 AAAHNPQYNE 526 (550)
Q Consensus 517 al~~~p~~~~ 526 (550)
+++++|....
T Consensus 336 AlrL~P~~~t 345 (372)
T 3ly7_A 336 AFNLRPGANT 345 (372)
T ss_dssp HHHHSCSHHH
T ss_pred HHhcCCCcCh
Confidence 9999998864
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.8e-08 Score=98.95 Aligned_cols=144 Identities=10% Similarity=0.038 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~------~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+.+.++|..|...|++++|.++++++++..+... .+...+|.++...|++++|++++++++......++....
T Consensus 56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 134 (434)
T 4b4t_Q 56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK- 134 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH-
Confidence 3567999999999999999999999998655432 345678899999999999999999999885433222221
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+.++|.++...|+|++|+..+++++... . ...++....+++..+|.+|...|++++|...+++++...
T Consensus 135 -----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 135 -----HSLSIKLATLHYQKKQYKDSLALINDLLREF-K-KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-T-TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHccChHHHHHHHHHHHHHH-H-hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 1367789999999999999999999988763 2 222344567899999999999999999999999998765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-06 Score=91.17 Aligned_cols=143 Identities=15% Similarity=0.107 Sum_probs=114.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHh-hCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALN-KEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~-~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++...+.+|..+...+.++++....++..+ ....++.+++.+|.+|...| ++++|+++|+++.+. ++...
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-----g~~~a- 213 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR-----GTVTA- 213 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----TCSCH-
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----CCHHH-
Confidence 466788999999999988887776444433 22345559999999999999 999999999999998 55554
Q ss_pred hHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHH-H--HhcCCHHHHHHHHHH
Q 008887 444 AIDLLIVASQWSGVACIRQ----EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA-L--CNVGRNAEAEKYLRL 516 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~----g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~-~--~~~g~~~eA~~~l~~ 516 (550)
..++++|.+|... +++++|+++|+++. +.++ .+++.+|.+ | ...|++++|.++|++
T Consensus 214 ------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~-------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 214 ------QRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYP-------ASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp ------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGST-------HHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 1457899999765 79999999999998 3334 899999999 5 578999999999999
Q ss_pred HHHcCCCcHHHHHHHHhhH
Q 008887 517 AAAHNPQYNELLEQLENND 535 (550)
Q Consensus 517 al~~~p~~~~~~~~l~~~~ 535 (550)
+.+. ++..+...+....
T Consensus 277 Aa~~--g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 277 GRAA--DQPRAELLLGKLY 293 (452)
T ss_dssp HHHT--TCHHHHHHHHHHH
T ss_pred HHHC--CCHHHHHHHHHHH
Confidence 9865 4777777776643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-06 Score=99.83 Aligned_cols=160 Identities=17% Similarity=0.100 Sum_probs=112.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh------------
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL------------ 435 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~------------ 435 (550)
+++.++++|..+...|++++|++.|.++ +++..+..+|.++.+.|+|++|+++|+.|.+....
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 1178 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence 5778889999999999999999999886 88999999999999999999999999887765200
Q ss_pred -----------cCCCCChhhHHHH-------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC---
Q 008887 436 -----------AGHPTEPEAIDLL-------------------IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE--- 482 (550)
Q Consensus 436 -----------~~~p~~~~~~~~l-------------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~--- 482 (550)
...++.. ....+ ...|..+|.++.+.|++++|++.++++.... .=
T Consensus 1179 Kl~rleele~fI~~~n~a-d~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~-aWkev 1256 (1630)
T 1xi4_A 1179 KTNRLAELEEFINGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR-TWKEV 1256 (1630)
T ss_pred hhcCHHHHHHHHhCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHH-HHHHH
Confidence 0000000 00000 0134446666667777777777777764332 10
Q ss_pred ---C------------ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 483 ---E------------PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 483 ---~------------~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+ ..+.....+.+..++..|...|.+++|+.+++.++.+++.+......+...
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence 0 000001224566788889999999999999999999999998888766654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=71.57 Aligned_cols=82 Identities=13% Similarity=0.007 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
-.+.+|..+++.|+|++|+.+|++|++.. +.+.........++..+|.+|.++|++++|..+++++++++|++..+..+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~-~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQL-DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhh-hccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 34579999999999999999999999874 22221223455889999999999999999999999999999999998777
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+..
T Consensus 86 ~~~ 88 (104)
T 2v5f_A 86 LKY 88 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-06 Score=84.15 Aligned_cols=144 Identities=12% Similarity=-0.007 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC------ChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhcCCC
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~------~~~a~~~lg~~~~~~g--~~~eA~~~~~~al~l~~~~~~p 439 (550)
+.+.....+..++..|+.+.|.+.+++..+.+|+ .......-|++.+..| ++++|...|+++.+. .|
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-----~p 209 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-----FP 209 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-----SC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-----CC
Confidence 3445568889999999999999999999999983 3333344465577777 999999999998766 44
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC---------CCCCccccccchhHHHHHHHHHHhcCCHHHH
Q 008887 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK---------EPEEPKSKAHYYDGLVVLASALCNVGRNAEA 510 (550)
Q Consensus 440 ~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~---------~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA 510 (550)
+.. .. ...++ ++..+|++++|.+.++.+++.. +|+++ +++.++..+...+|+ +|
T Consensus 210 ~~~-~~----~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~-------~~LaN~i~l~~~lgk--~a 272 (310)
T 3mv2_B 210 TWK-TQ----LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP-------TFLANQITLALMQGL--DT 272 (310)
T ss_dssp SHH-HH----HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH-------HHHHHHHHHHHHTTC--TT
T ss_pred Ccc-cH----HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH-------HHHHHHHHHHHHhCh--HH
Confidence 311 10 12222 8999999999999999877752 15455 899899999888998 99
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHh
Q 008887 511 EKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 511 ~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
.++++++.+.+|+++-....-++
T Consensus 273 ~~l~~qL~~~~P~hp~i~d~~~k 295 (310)
T 3mv2_B 273 EDLTNQLVKLDHEHAFIKHHQEI 295 (310)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999977665444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-06 Score=74.87 Aligned_cols=98 Identities=19% Similarity=0.125 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHhcCCCC-CCccccccchhHH
Q 008887 419 LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE---KWEEGIAHLERIGNLKEP-EEPKSKAHYYDGL 494 (550)
Q Consensus 419 ~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g---~~~eA~~~~~~al~~~~p-~~~~~~~~~~~~~ 494 (550)
...+.+.|++.+.. ++.+. .+.+++|.++.+.+ +.++|+..++++++.+.| +.. +++
T Consensus 14 l~~~~~~y~~e~~~-----~~~~~-------~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~r-------d~l 74 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-----GSVSK-------STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQR-------DYV 74 (152)
T ss_dssp HHHHHHHHHHHHHT-----TCCCH-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH-------HHH
T ss_pred HHHHHHHHHHHHcc-----CCCcH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchH-------HHH
Confidence 44566777777665 55443 37888999999988 777999999999987422 223 899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhH
Q 008887 495 VVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENND 535 (550)
Q Consensus 495 ~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~ 535 (550)
|++|..|.+.|+|++|+++++++++++|++.++....+.+.
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999887665533
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.1e-06 Score=66.12 Aligned_cols=65 Identities=23% Similarity=0.227 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHcCC---CCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~---~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
+++.+..+|..++..++ .++|..+++++|+.+|+++.+++.+|..+++.|+|++|+.+++++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555566665554443 455666666666666666666666666666666666666666666655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-06 Score=74.80 Aligned_cols=89 Identities=18% Similarity=0.121 Sum_probs=80.5
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+|..|...+..++|+++|+++.+. +++.+++++|.+|.. .+++++|+++|+++.+.. ++ .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-------~~-------~ 94 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-------DQ-------D 94 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------CH-------H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-------CH-------H
Confidence 888888888888999999999887 789999999999999 999999999999998871 22 3
Q ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIR----QEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~----~g~~~eA~~~~~~al~~~ 479 (550)
+.+++|.+|.. .+++++|+++|+++.+..
T Consensus 95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 78899999999 999999999999999986
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-06 Score=67.71 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 399 EPDNINALILMGQTQLQKGL---LEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 399 ~p~~~~a~~~lg~~~~~~g~---~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
+|++++.+..+|.+++..++ .++|...++++++. +|+++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-----dp~~~ 43 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-----EPYNE 43 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-----CTTCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-----CcCCH
Confidence 46667777777777765555 56777777777777 66666
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-06 Score=89.55 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
++..+|..+...|++++|..+|.++ ..+..+|.++.+.|++++|++.++++.. + .
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~~----------~-------~ 178 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS----------T-------R 178 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHTC----------H-------H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcCC----------c-------h
Confidence 6668999999999999999999987 4688999999999999999999999932 2 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
+|...+.++...|+++.|..+..+ +... | +-...+..+|.+.|++++|+.++++++.+++.+......
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~-a----------d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~fte 246 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLH-IVVH-A----------DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 246 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTT-TTTC-H----------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHH-HHhC-H----------hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 677788999999999999777665 3233 3 445568889999999999999999999999999888887
Q ss_pred HHhhH
Q 008887 531 LENND 535 (550)
Q Consensus 531 l~~~~ 535 (550)
+....
T Consensus 247 l~il~ 251 (449)
T 1b89_A 247 LAILY 251 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=5.8e-06 Score=80.07 Aligned_cols=116 Identities=21% Similarity=0.187 Sum_probs=96.3
Q ss_pred HHHHHHh-hCCCChHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHH
Q 008887 391 LLQLALN-KEPDNINALILMGQTQLQ-----KGL------LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (550)
Q Consensus 391 ~~~~aL~-~~p~~~~a~~~lg~~~~~-----~g~------~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~ 458 (550)
-+.+++. .+|++++++++.|.+... .|+ ..+|...+++++++ +|+..+. .+|..+|..
T Consensus 139 ~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL-----DP~~~~G-----sA~~~LG~l 208 (301)
T 3u64_A 139 RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL-----WPSYQEG-----AVWNVLTKF 208 (301)
T ss_dssp HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH-----CTTHHHH-----HHHHHHHHH
T ss_pred hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh-----CCCcccC-----HHHHHHHHH
Confidence 3455555 678899999999888754 233 45899999999999 8885533 278889999
Q ss_pred HHHh-----cCHHHHHHHHHHHhcCCCCCC-ccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCc
Q 008887 459 CIRQ-----EKWEEGIAHLERIGNLKEPEE-PKSKAHYYDGLVVLASALCN-VGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 459 ~~~~-----g~~~eA~~~~~~al~~~~p~~-~~~~~~~~~~~~~La~~~~~-~g~~~eA~~~l~~al~~~p~~ 524 (550)
|... |+.++|.++|++++++. |+. . ..++.+|+.+.. .|++++|.++++++++.+|..
T Consensus 209 Y~~vPp~~gGd~ekA~~~ferAL~Ln-P~~~i-------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 209 YAAAPESFGGGMEKAHTAFEHLTRYC-SAHDP-------DHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHSCTTTTCCHHHHHHHHHHHHHHC-CTTCS-------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHhCCCccCCCHHHHHHHHHHHHHhC-CCCCc-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9884 99999999999999998 854 7 999999999988 599999999999999988774
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.23 E-value=6.4e-06 Score=67.78 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=65.5
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCC
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKE-------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~-------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p 439 (550)
+++++.+++|..++..|+|++|+..|++|++.. .....++..+|.++.+.|++++|+.++++++++ +|
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P 77 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DP 77 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CC
Confidence 688999999999999999999999999999953 345788999999999999999999999999999 88
Q ss_pred CCh
Q 008887 440 TEP 442 (550)
Q Consensus 440 ~~~ 442 (550)
++.
T Consensus 78 ~~~ 80 (104)
T 2v5f_A 78 EHQ 80 (104)
T ss_dssp TCH
T ss_pred CCH
Confidence 887
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=5.4e-06 Score=72.64 Aligned_cols=87 Identities=10% Similarity=0.057 Sum_probs=74.3
Q ss_pred CChHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcCC-CCChhhHHHHHHHHHHHHHHHHH
Q 008887 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGH-PTEPEAIDLLIVASQWSGVACIR 461 (550)
Q Consensus 386 ~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~-p~~~~~~~~l~~a~~~lg~~~~~ 461 (550)
..+.+.|++.++.++.+.++.+.+|.++.+.+ +.++++..+++.++. + |.+. . +++|++|..+++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~~p~~~-r-----d~lY~LAv~~~k 83 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----GSKEEQ-R-----DYVFYLAVGNYR 83 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----SCHHHH-H-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCccch-H-----HHHHHHHHHHHH
Confidence 34667788888888899999999999999988 777999999999998 4 3222 2 388899999999
Q ss_pred hcCHHHHHHHHHHHhcCCCCCCc
Q 008887 462 QEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 462 ~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.|+|++|+++++++++.+ |++.
T Consensus 84 l~~Y~~A~~y~~~lL~ie-P~n~ 105 (152)
T 1pc2_A 84 LKEYEKALKYVRGLLQTE-PQNN 105 (152)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCH
T ss_pred ccCHHHHHHHHHHHHhcC-CCCH
Confidence 999999999999999998 8776
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00013 Score=80.41 Aligned_cols=160 Identities=16% Similarity=0.108 Sum_probs=121.0
Q ss_pred CChHHHHHHHHHHHHcCCCCChH-HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh------cCCC
Q 008887 367 LTPKELIALSVKFLSKGDKERPI-PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL------AGHP 439 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~-~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~------~~~p 439 (550)
..++-.+..|..+...|+.++|. +.|++|+...|.+...+..++......|++++|.+.|++++..... ...|
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 46666778888888999999997 9999999999999999999999999999999999999999976200 0013
Q ss_pred CChhhH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC-HHHHHHHH
Q 008887 440 TEPEAI----DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR-NAEAEKYL 514 (550)
Q Consensus 440 ~~~~~~----~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~-~~eA~~~l 514 (550)
.+.... ......|...+....+.|+.+.|.+.|++|++...+... ..+...|.+....|+ .++|...|
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~-------~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP-------DIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT-------HHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 211000 012235667778888899999999999999987202222 567777777666654 89999999
Q ss_pred HHHHHcCCCcHHHHHHHHh
Q 008887 515 RLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 515 ~~al~~~p~~~~~~~~l~~ 533 (550)
+++++..|+....+....+
T Consensus 494 e~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 494 ELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHH
Confidence 9999999998887754433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.2e-06 Score=79.41 Aligned_cols=83 Identities=16% Similarity=0.059 Sum_probs=73.7
Q ss_pred ChHHHHHHHHhhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhhcCCCCC-hhhHHHHHHHHHHHHHH
Q 008887 387 RPIPLLQLALNKEPD--NINALILMGQTQLQK-----GLLEEAVEYLECAISKLFLAGHPTE-PEAIDLLIVASQWSGVA 458 (550)
Q Consensus 387 ~A~~~~~~aL~~~p~--~~~a~~~lg~~~~~~-----g~~~eA~~~~~~al~l~~~~~~p~~-~~~~~~l~~a~~~lg~~ 458 (550)
+|...++++++++|+ +..+|..+|.+|.+. |+.++|.++|++|+++ +|+. . . .++.+|..
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-----nP~~~i-d------~~v~YA~~ 248 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-----CSAHDP-D------HHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-----CCTTCS-H------HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-----CCCCCc-h------HHHHHHHH
Confidence 588999999999999 667999999999995 9999999999999999 8865 4 3 66778988
Q ss_pred HHH-hcCHHHHHHHHHHHhcCCCCC
Q 008887 459 CIR-QEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 459 ~~~-~g~~~eA~~~~~~al~~~~p~ 482 (550)
+.. +|++++|.++++++++.. |+
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~-p~ 272 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAID-PE 272 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCC-GG
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CC
Confidence 877 599999999999999996 54
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=3.3e-06 Score=87.29 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.....+..+...|++++|+.+++.+.+..++ +.+...++.+|.+.|+++++.++++ .|+. .
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~--------~ 123 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN----------GPNN--------A 123 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTT----------CC-----------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc----------CCcH--------H
Confidence 3445555555566666666666655553222 3444445555555555555444331 1111 1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
+++++|.++...|+|++|..+|.++ ..|..+|.|+.++|++++|++.++++
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 5566677777777777777777653 13566777777777777777777766
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.8e-05 Score=89.77 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~ 453 (550)
++|..+...|++++|..+|+++- .+ ...+...+...|++++|.++++++-. + .+|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~----~~---~~A~~VLie~i~nldrAiE~Aervn~----------p-------~vWs 1109 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD----VN---TSAVQVLIEHIGNLDRAYEFAERCNE----------P-------AVWS 1109 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC----CH---HHHHHHHHHHHhhHHHHHHHHHhcCC----------H-------HHHH
Confidence 46888899999999999999862 11 11123334466777777777665511 1 2677
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008887 454 WSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 454 ~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 523 (550)
.+|.++.+.|++++|++.|.++ +++ ..+..+|.++.+.|++++|+++|..+.+..++
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA------dD~-------say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA------DDP-------SSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc------CCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 7888888888888888888764 333 67778888888888888888888877766643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00019 Score=60.54 Aligned_cols=100 Identities=17% Similarity=0.065 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCCCCccccccchhH
Q 008887 417 GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEE---GIAHLERIGNLKEPEEPKSKAHYYDG 493 (550)
Q Consensus 417 g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~e---A~~~~~~al~~~~p~~~~~~~~~~~~ 493 (550)
.....+.+.|++.... ++... .+.+++|.++.+.++.++ ++..++..++...| . ..-+.
T Consensus 15 ~~l~~~~~~y~~e~~~-----~~~s~-------~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p---~---~~Rd~ 76 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-----GSVSK-------STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK---E---EQRDY 76 (126)
T ss_dssp HHHHHHHHHHHHHHHH-----SCCCH-------HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH---H---HHHHH
T ss_pred HHHHHHHHHHHHHhcc-----CCCcH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc---c---hHHHH
Confidence 3455666777777665 44333 277789999998887777 99999998876422 1 12288
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 494 LVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 494 ~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
++.||..+.+.|+|++|+++++.+|+++|++.++......+
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999987765553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.2e-05 Score=65.59 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC---CCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcC-CCC
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE---PDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAG-HPT 440 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~---p~~------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~-~p~ 440 (550)
.+++.....+..|.|+.|+-+...++... ++- .+++..+|++++..|+|..|...|++++...+... ++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45678889999999999999999977744 331 34789999999999999999999999988854211 110
Q ss_pred ----------Chh--hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH
Q 008887 441 ----------EPE--AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 441 ----------~~~--~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
.+. ....-.+..|.++.|+.+.|++++|+..++..-.. .+.+ .....||++|.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~-------kvnm~LakLy~ 166 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTP-------KINMLLANLYK 166 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCH-------HHHHHHHHHCC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCH-------HHHHHHHHHhc
Confidence 000 00000136678999999999999999999874333 2333 78888888763
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00043 Score=59.71 Aligned_cols=122 Identities=10% Similarity=-0.035 Sum_probs=95.3
Q ss_pred hCCCChHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 008887 398 KEPDNINALILMGQTQLQKGLL------EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAH 471 (550)
Q Consensus 398 ~~p~~~~a~~~lg~~~~~~g~~------~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~ 471 (550)
..|.+++.|........+.|+. ++-++.|++|+... -|........++..|...|.. ...++.++|.+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~----Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~v 82 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL----PPDKYGQNESFARIQVRFAEL-KAIQEPDDARDY 82 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS----CGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC----CccccccHHHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence 5789999999999999988999 88889999999884 222122233333455566644 567999999999
Q ss_pred HHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 472 LERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 472 ~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
|+.++... ... +.+|...|+--.++|+.++|++.+.+++.+.|...+..+..-
T Consensus 83 y~~a~~~h-KkF-------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 83 FQMARANC-KKF-------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHHHHHC-TTB-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHHHHHHh-HHH-------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 99998874 544 489999999999999999999999999999999887665443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00089 Score=73.64 Aligned_cols=145 Identities=8% Similarity=-0.105 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh-CCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK-EPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~-~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
.....+....+.|+.+.|.+.|.+|++. .+.....+...|.+..+.+ +.+.|.+.|+++++. .|.++ .
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-----~p~~~-~---- 505 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-----FATDG-E---- 505 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-----HTTCH-H----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----CCCch-H----
Confidence 3446666677788999999999999987 5455677777777776665 599999999999999 67666 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.+...+......|+.+.|...|++++... ++. ......|......-.+.|+.+.+...++++.+..|+.....
T Consensus 506 --~w~~y~~fe~~~~~~~~AR~lferal~~~-~~~----~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 506 --YINKYLDFLIYVNEESQVKSLFESSIDKI-SDS----HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHTTTS-SST----THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 34456677778899999999999999986 531 12236788888888899999999999999999999987644
Q ss_pred HHHH
Q 008887 529 EQLE 532 (550)
Q Consensus 529 ~~l~ 532 (550)
.-.+
T Consensus 579 ~f~~ 582 (679)
T 4e6h_A 579 EFTN 582 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00054 Score=57.77 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=73.7
Q ss_pred cCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHhhhcCC-CCChhhHHHHHHHHHHHHH
Q 008887 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEE---AVEYLECAISKLFLAGH-PTEPEAIDLLIVASQWSGV 457 (550)
Q Consensus 382 ~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~e---A~~~~~~al~l~~~~~~-p~~~~~~~~l~~a~~~lg~ 457 (550)
..+...+.+.|++.+..++....+.+.+|+++.+.++..+ ++..++..++. + |... . +..|.+|.
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~~p~~~-R-----d~lY~LAv 82 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEEQ-R-----DYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHHH-H-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCcchH-H-----HHHHHHHH
Confidence 3345567778888888888899999999999999988876 88888777655 2 2111 1 37889999
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.+++.|+|++|+.+++.+++.+ |++.
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~e-P~n~ 108 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTE-PQNN 108 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHhhhHHHHHHHHHHHHHhC-CCCH
Confidence 9999999999999999999998 9876
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00088 Score=67.38 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=65.2
Q ss_pred hhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 397 NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 397 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
..+|.++.++..++..+...|++++|++.+++|+++ +|. . .++..+|.++...|++++|++.|++|+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----n~s---~-----~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-----EMS---W-----LNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCC---H-----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCC---H-----HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999 653 2 266779999999999999999999999
Q ss_pred cCCCCCCc
Q 008887 477 NLKEPEEP 484 (550)
Q Consensus 477 ~~~~p~~~ 484 (550)
+++ |...
T Consensus 338 rL~-P~~~ 344 (372)
T 3ly7_A 338 NLR-PGAN 344 (372)
T ss_dssp HHS-CSHH
T ss_pred hcC-CCcC
Confidence 997 7543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0028 Score=54.32 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCHH---HHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 451 ASQWSGVACIRQEKWE---EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~---eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
+.+++|.++.+..+.+ +++..++..++.. |... -+.++.||..+.++|+|++|+++.+..|+..|++.++
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~------RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRR------RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTH------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccch------hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 6778999998876554 7999999988865 5321 2789999999999999999999999999999999988
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
....+.+
T Consensus 114 ~~Lk~~I 120 (144)
T 1y8m_A 114 GALKSMV 120 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7755543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0022 Score=54.27 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCH---HHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 451 ASQWSGVACIRQEKW---EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 451 a~~~lg~~~~~~g~~---~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
+.+++|.++.+..+. .+++..++..++.. |.. .-+.++.+|..+.++|+|++|+++.+.++++.|++.++
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESR------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGG------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cch------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 677899999887655 47999999988765 422 12899999999999999999999999999999999998
Q ss_pred HHHHHhhHH
Q 008887 528 LEQLENNDE 536 (550)
Q Consensus 528 ~~~l~~~~~ 536 (550)
....+.+.+
T Consensus 115 ~~Lk~~Ie~ 123 (134)
T 3o48_A 115 GALKSMVED 123 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 775555333
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0051 Score=65.20 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc
Q 008887 385 KERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE 463 (550)
Q Consensus 385 ~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g 463 (550)
.++|.++|++..+.. .-+..++..+-..|.+.|++++|.+.|++..+.. ..|+ . ..|..+-..|.+.|
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~Pd---~-----~tyn~lI~~~~~~g 154 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG---IQPR---L-----RSYGPALFGFCRKG 154 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCCC---H-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCc---c-----ceehHHHHHHHHCC
Confidence 456777888776643 2367789999999999999999999999887651 1222 2 16667888899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCcHH
Q 008887 464 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH--NPQYNE 526 (550)
Q Consensus 464 ~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~--~p~~~~ 526 (550)
+.++|.+.|++..+..-..+. ..|..+-.+|.+.|+.++|.+.+++..+. .|+...
T Consensus 155 ~~~~A~~l~~~M~~~G~~Pd~-------~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 155 DADKAYEVDAHMVESEVVPEE-------PELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999999998776422233 68889999999999999999999987664 455443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0031 Score=55.56 Aligned_cols=112 Identities=9% Similarity=-0.026 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC--
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKE-- 480 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~-- 480 (550)
-.+++.-...+...|.|+.|+-....++..... +++- .....-..+..++|.+++.+|+|..|...|+++++...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~--~~~~-~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN--NPEL-FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--STTS-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC--Cccc-ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 345667778888999999999999988777311 2221 01222234677899999999999999999999876531
Q ss_pred CCCcc---------------ccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 481 PEEPK---------------SKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 481 p~~~~---------------~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
++... +.....+..+.+|.||.+.|++++|+..++.+
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11110 01123478899999999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.014 Score=61.74 Aligned_cols=142 Identities=12% Similarity=0.070 Sum_probs=104.9
Q ss_pred ChHHHH-HHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHhhhc
Q 008887 368 TPKELI-ALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGL---------LEEAVEYLECAISKLFLA 436 (550)
Q Consensus 368 ~~~~l~-~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~---------~~eA~~~~~~al~l~~~~ 436 (550)
+|+..+ ..-..+.+.|+.++|+++|++..+.. .-+..+|..+-.++...+. .++|.+.|++..+.
T Consensus 24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---- 99 (501)
T 4g26_A 24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---- 99 (501)
T ss_dssp CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh----
Confidence 455544 34457788999999999999998864 2356677777777765543 67899999887665
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 437 ~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.-. |+. .+|..+-.+|.+.|+.++|.+.|++..+..-..+. ..|..+-..|.+.|+.++|.+.+++
T Consensus 100 -G~~-Pd~-----~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-------~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 100 -KVV-PNE-----ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-------RSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp -TCC-CCH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCC-CCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-------ceehHHHHHHHHCCCHHHHHHHHHH
Confidence 211 212 16777889999999999999999998765312233 6788888999999999999999999
Q ss_pred HHHc--CCCcHHH
Q 008887 517 AAAH--NPQYNEL 527 (550)
Q Consensus 517 al~~--~p~~~~~ 527 (550)
..+. .|+...+
T Consensus 166 M~~~G~~Pd~~ty 178 (501)
T 4g26_A 166 MVESEVVPEEPEL 178 (501)
T ss_dssp HHHTTCCCCHHHH
T ss_pred HHhcCCCCCHHHH
Confidence 8774 3665443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.034 Score=47.61 Aligned_cols=92 Identities=11% Similarity=0.160 Sum_probs=72.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhhhcCCCCChh
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLE---EAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~---eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++++++-.+-..|...+. + .-..++.+++|+++.+..+.+ +++..++..++. +|....
T Consensus 17 l~~eeL~~lr~qY~~E~~-~-------------~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~R 77 (144)
T 1y8m_A 17 LYPQQLEILRQQVVSEGG-P-------------TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRR 77 (144)
T ss_dssp CCHHHHHHHHHHHHHTTS-T-------------TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHH
T ss_pred CCHHHHHHHHHHHHHhcc-C-------------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Cccchh
Confidence 577777766666666522 1 346788999999999888665 688888888887 676552
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
+ ..|.+|..+++.|+|++|.++++.+++.+ |++.
T Consensus 78 d------cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-P~n~ 111 (144)
T 1y8m_A 78 E------CLYYLTIGCYKLGEYSMAKRYVDTLFEHE-RNNK 111 (144)
T ss_dssp H------HHHHHHHHHHTTTCHHHHHHHHHHHHHTC-CCCH
T ss_pred H------HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 2 77889999999999999999999999997 8776
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.70 E-value=0.046 Score=57.72 Aligned_cols=71 Identities=8% Similarity=-0.119 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG-RNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g-~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.|...+....+.+..+.|.+.|+++ +. |.. ....|...|......| +.+.|...|+++++..|+.++.+.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~------~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN--EGV------GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCC------CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCC------ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 5566677777788999999999999 43 422 1245666666655555 699999999999998898877654
Q ss_pred H
Q 008887 530 Q 530 (550)
Q Consensus 530 ~ 530 (550)
.
T Consensus 359 ~ 359 (493)
T 2uy1_A 359 E 359 (493)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.69 E-value=0.028 Score=59.33 Aligned_cols=129 Identities=11% Similarity=0.018 Sum_probs=95.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHH----------------------------------
Q 008887 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT---------------------------------- 412 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~---------------------------------- 412 (550)
.+++..+..+..+...|+.++|...|++|+.. |.+...+...+..
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 35677778888889999999999999999999 9886655544432
Q ss_pred ------HHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhcCCCCCCcc
Q 008887 413 ------QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE-KWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 413 ------~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g-~~~eA~~~~~~al~~~~p~~~~ 485 (550)
..+.++.+.|.+.|++| . .|... .. .+...|..-...+ +.+.|...|+++++.. |+++
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A--~-----~~~~~-~~-----v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~- 354 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL--G-----NEGVG-PH-----VFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDST- 354 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH--T-----TSCCC-HH-----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh--h-----CCCCC-hH-----HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCH-
Confidence 22356677788888888 3 33221 11 2333454444445 6999999999999987 7766
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 486 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 486 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
..+..++......|+.++|+..|+++
T Consensus 355 ------~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 355 ------LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777788888999999999999886
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.022 Score=48.16 Aligned_cols=71 Identities=6% Similarity=0.059 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 402 NINALILMGQTQLQKGLLE---EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~---eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
.+.+.+++|+++.+..+.+ +++..++..++. +|... . +.+|.+|..+++.|+|++|.++.+.+++.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~-R-----d~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRR-R-----ECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGH-H-----HHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Ccchh-H-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5678888888888887664 688888888776 55333 2 37788999999999999999999999999
Q ss_pred CCCCCc
Q 008887 479 KEPEEP 484 (550)
Q Consensus 479 ~~p~~~ 484 (550)
+ |++.
T Consensus 108 e-P~N~ 112 (134)
T 3o48_A 108 E-RNNK 112 (134)
T ss_dssp C-TTCH
T ss_pred C-CCCH
Confidence 7 8776
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.049 Score=51.86 Aligned_cols=129 Identities=12% Similarity=0.009 Sum_probs=88.4
Q ss_pred HHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
...++.|++++|++..+..++.+|.|......+.+.++-.|+|+.|.+.++-+.++ +|.... .+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l-----~p~~~~-----------~a 68 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLP-----------GA 68 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHH-----------HH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CchhhH-----------HH
Confidence 35678899999999999999999999999999999999999999999999999999 554431 22
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCC-CCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcH
Q 008887 457 VACIRQEKWEEGIAHLERIGNLK-EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525 (550)
Q Consensus 457 ~~~~~~g~~~eA~~~~~~al~~~-~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 525 (550)
..|... =.|...=++++.-. .|....... .......-+......|+.++|.+.-.++++..|...
T Consensus 69 ~~yr~l---I~aE~~R~~vfaG~~~P~~~g~~~-~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 69 SQLRHL---VKAAQARKDFAQGAATAKVLGENE-ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHH---HHHHHHHHHHTTSCCCEECCCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHH---HHHHHHHHHHHcCCCCCCCCCCCH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 222211 11111112223221 133322211 123344445556678999999999999998876543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.13 Score=45.88 Aligned_cols=108 Identities=9% Similarity=-0.046 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.-+++| ...|+++.|.+..++. ++...|..+|...+..|+++-|+.+|+++-.. .
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----------~--- 64 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF-----------D--- 64 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------H---
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------H---
Confidence 667667765 7889999999988765 67889999999999999999999999887444 1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
.+...|.-.|+.++=.+.-+.+...+ . +..-..++..+|+.+++++.|.+
T Consensus 65 ------~L~~Ly~~tg~~e~L~kla~iA~~~g-~------------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 65 ------KLSFLYLVTGDVNKLSKMQNIAQTRE-D------------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp ------HHHHHHHHHTCHHHHHHHHHHHHHTT-C------------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------HHHHHHHHhCCHHHHHHHHHHHHHCc-c------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 24445555666655544444444332 1 22223445556666666665543
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.19 Score=44.07 Aligned_cols=132 Identities=15% Similarity=0.083 Sum_probs=89.3
Q ss_pred HHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHH
Q 008887 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (550)
Q Consensus 380 ~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~ 459 (550)
++-.+|+.++=+- .. +.|..++-...++..+...|+|..|+-.+.+ + +. . .+.+.-+.||
T Consensus 13 ~kY~dYdt~~fLs-a~--L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---l--------NT-~-----Ts~YYk~LCy 72 (242)
T 3kae_A 13 IRYRDYETAIFLA-AC--LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK---L--------NT-C-----TSKYYESLCY 72 (242)
T ss_dssp HHTTCHHHHHHHH-HH--HC----CTHHHHHHHHHHTTCHHHHHHHHHT---C--------CB-H-----HHHHHHHHHH
T ss_pred hhcccccHHHHHH-HH--HccCChHHHhhhhhhhhhcchHhHHHHHHHh---c--------ch-H-----HHHHHHHHHH
Confidence 3444565543221 11 3455556677889999999999988765422 1 22 1 1566788999
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCCcc----------ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 460 IRQEKWEEGIAHLERIGNLKEPEEPK----------SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 460 ~~~g~~~eA~~~~~~al~~~~p~~~~----------~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.+.++|.+|+..+++.++-.-.+|+. +..+....+..+|.++.+.|+.+||+.++.......+-.....+
T Consensus 73 ~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 73 KKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 99999999999999999432111211 11223356778999999999999999999999998887776664
Q ss_pred HH
Q 008887 530 QL 531 (550)
Q Consensus 530 ~l 531 (550)
.+
T Consensus 153 li 154 (242)
T 3kae_A 153 LL 154 (242)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.11 Score=52.99 Aligned_cols=113 Identities=19% Similarity=0.028 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAV-EYLECAISKLFLAGHPTEPEAIDLLIVA 451 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~-~~~~~al~l~~~~~~p~~~~~~~~l~~a 451 (550)
...|......|+.++|.+.+++|+.+..+..-.-. . ...|-.+. ..+++.. + .+
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~--~-----~~~w~~~~r~~l~~~~-~-----------------~a 173 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--R-----DFQFVEPFATALVEDK-V-----------------LA 173 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--T-----TSTTHHHHHHHHHHHH-H-----------------HH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC--C-----chhHHHHHHHHHHHHH-H-----------------HH
Confidence 35555666778999999999999998754321100 0 12222221 1121111 1 13
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
...++.++...|++++++..+++++..+ |-+. .++..+-.+|...|+..+|.+.|+++-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E-------~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYRE-------PLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3346777778888888888888888887 7666 788888888888888888888887653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.18 Score=51.17 Aligned_cols=105 Identities=10% Similarity=-0.083 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccc
Q 008887 408 LMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSK 487 (550)
Q Consensus 408 ~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~ 487 (550)
.+|..|+..|+|.+|.+.+.+..+-.. ..+ ....+.+.+..-...|...|++.++.+.+.++.... ..-..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~---~~d---d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~-~ai~~~p 176 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELK---KLD---DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA-NAIYCPP 176 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHT---TSS---CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHh---ccc---cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-ccCCCCH
Confidence 689999999999999999999887631 111 124455566677888999999999999999987653 1100111
Q ss_pred ccchhHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 008887 488 AHYYDGLVVLASALC-NVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 488 ~~~~~~~~~La~~~~-~~g~~~eA~~~l~~al~ 519 (550)
.-.+.....-|..+. ..++|.+|..+|-++++
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 224466777788888 89999999999998874
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.59 E-value=1.1 Score=39.44 Aligned_cols=139 Identities=18% Similarity=0.181 Sum_probs=95.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh------------hcCCCCC
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF------------LAGHPTE 441 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~------------~~~~p~~ 441 (550)
-++..++..|+|.+++-++.. -+...+.+....+|.+.+||..|+.+++..++--. --.+|.+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 466678888988887766543 45678889999999999999999999999983310 0113344
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC--------------Ccccccc------------------
Q 008887 442 PEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE--------------EPKSKAH------------------ 489 (550)
Q Consensus 442 ~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~--------------~~~~~~~------------------ 489 (550)
.+. .+.-+|..+.+.|+.+||+.++....... +- ...++.+
T Consensus 113 kEf------Fy~l~a~lltq~g~r~EaI~y~~~Sf~~~-~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~ 185 (242)
T 3kae_A 113 EEF------FESLLGDLCTLSGYREEGIGHYVRSFGKS-FLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSI 185 (242)
T ss_dssp HHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHHHhcCHHHhhhHhhhhcCCc-cccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHH
Confidence 322 45568999999999999999988655332 11 0111111
Q ss_pred ---------------------chhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 490 ---------------------YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 490 ---------------------~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
-.......|.-|..+|..|+..++|..+-+.+|.+
T Consensus 186 ~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 186 EFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 01122345667888899999999888888888754
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.47 Score=40.94 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=81.5
Q ss_pred CCChHHHHHHHHHHHHcCCC------CChHHHHHHHHhhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008887 366 NLTPKELIALSVKFLSKGDK------ERPIPLLQLALNKEPD--------NINALILMGQTQLQKGLLEEAVEYLECAIS 431 (550)
Q Consensus 366 ~l~~~~l~~la~~~~~~g~~------~~A~~~~~~aL~~~p~--------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~ 431 (550)
..+++..+......-..|+. ++-.+.|++|+..-|- ....|...|.. ...+|.++|.+.|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 35888898888888888998 7788899999885543 34455566644 566999999999999998
Q ss_pred HhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 432 l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+ +.... ..|...|.--.++|+.++|.+.+.+++... |..
T Consensus 89 ~-----hKkFA-------Kiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~ 127 (161)
T 4h7y_A 89 N-----CKKFA-------FVHISFAQFELSQGNVKKSKQLLQKAVERG-AVP 127 (161)
T ss_dssp H-----CTTBH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBC
T ss_pred H-----hHHHH-------HHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCc
Confidence 7 33332 367778888889999999999999999997 644
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.21 Score=55.09 Aligned_cols=127 Identities=9% Similarity=0.015 Sum_probs=83.5
Q ss_pred cCC-CCChHHHHHHHHhhCCCChHHHHHHHHHHH--H-cCCHHHHHHHHHHHHHHh---hhcCCCCChhhHH---HHHHH
Q 008887 382 KGD-KERPIPLLQLALNKEPDNINALILMGQTQL--Q-KGLLEEAVEYLECAISKL---FLAGHPTEPEAID---LLIVA 451 (550)
Q Consensus 382 ~g~-~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~--~-~g~~~eA~~~~~~al~l~---~~~~~p~~~~~~~---~l~~a 451 (550)
.|+ ++.|++++++..+.+|.... ++..+.+.. + ..+--+|++.+.++++.. .....+.+..... .....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 445 47799999999999887643 333333322 1 223446777777776421 0011222221110 00112
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 452 SQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 452 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
...-+.-+...|+++-|+++.++++... |.+- ..|+.|+.||..+|+++.|.-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF-------~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELA-LDSF-------ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcC-chhh-------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2335666778999999999999999997 8666 99999999999999999999776654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.27 Score=50.73 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEP---DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p---~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
....+|..|+..|++++|.+.|.++..... .-.+.+.....++...++|..+..+++++-...... .++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~---~d~~~--- 206 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG---GDWER--- 206 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---CCTHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC---CCHHH---
Confidence 445899999999999999999999987532 346788889999999999999999999998774221 22211
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
........|..+...++|.+|..+|-.+....
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11234456788889999999999999887663
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.064 Score=55.49 Aligned_cols=109 Identities=17% Similarity=-0.029 Sum_probs=81.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
-..++..+|..|...|++++|.+.|.++... +..+.+. . ..+.....++...+++..+..++.++-... .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~---~~~~~~k--i----d~~l~~irl~l~~~d~~~~~~~~~ka~~~~-~ 199 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSK---AISTGAK--I----DVMLTIARLGFFYNDQLYVKEKLEAVNSMI-E 199 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHH---HTCCCSH--H----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCChHHH--H----HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-h
Confidence 4567889999999999999999999998877 2222222 2 255567888889999999999999987653 2
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
...+...........|..+...++|.+|...|..++...
T Consensus 200 -~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 200 -KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp -TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred -cCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 222223334566677888889999999999998876543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.05 E-value=0.25 Score=54.74 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=36.7
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 429 (550)
.+..|++++|.+..+ .-++...|..+|..+.+.|+++.|+++|.++
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 456677777766543 3467889999999999999999999999886
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.92 Score=51.35 Aligned_cols=54 Identities=13% Similarity=-0.026 Sum_probs=23.1
Q ss_pred HHHHHcCCCCChHHHHHHHHhh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 377 VKFLSKGDKERPIPLLQLALNK----EPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~aL~~----~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
..|.+.|+.++|.++|++.-+. -.-+...|+.+-..|.+.|+.++|.+.|++..
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444444444444332211 12234444444444444444444444444443
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.60 E-value=0.69 Score=48.49 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
-+..+|....+..+++.|..+|++|..+.|++...++.+|.++...|+.-+|+-+|-+++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 44589999999999999999999999999999999999999999999999999999999866
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.53 Score=49.39 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
...++|........++.|..+|++|.... |+.+ ..+..||.++...|+.-+|.-+|.+++....-++.+..+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G-------~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~n 225 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNG-------QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCC-------chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHH
Confidence 44568999999999999999999999998 9888 999999999999999999999999999988778999998
Q ss_pred HHhhHHHH
Q 008887 531 LENNDEEF 538 (550)
Q Consensus 531 l~~~~~~~ 538 (550)
+....+..
T Consensus 226 L~~~f~~~ 233 (497)
T 1ya0_A 226 LQKALSKA 233 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88755544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.66 Score=48.02 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 405 a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
....|+.+|...|++.+|.+.+.....-- ....+ .....+.+......+...+++.+|...+.++.... -...
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et---~~~~~---~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~-~~~~ 211 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVET---YGSME---MSEKIQFILEQMELSILKGDYSQATVLSRKILKKT-FKNP 211 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CSSSC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH---Hhccc---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-cccC
Confidence 34568888888888888888887765431 11111 12233455667888999999999999999864321 1111
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008887 485 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520 (550)
Q Consensus 485 ~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 520 (550)
....-....+...|..+...++|.+|-.+|.++...
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 111223467788899999999999999999988763
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.34 E-value=0.38 Score=48.83 Aligned_cols=125 Identities=13% Similarity=0.029 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhC--CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKE--PD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~--p~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+|..|+..|+|.+|.+.+.+.++.- .+ -.+.+..-..+|...+++.++...+.+|....-.. +.+|..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai--~~~p~i--- 178 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI--YCPPKV--- 178 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHH---
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC--CCCHHH---
Confidence 78999999999999999999988832 12 24567778889999999999999999998774111 123311
Q ss_pred HHHHHHHHHHHHH-HhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC
Q 008887 448 LIVASQWSGVACI-RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 506 (550)
Q Consensus 448 l~~a~~~lg~~~~-~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~ 506 (550)
.......-|..+. ..++|++|..+|-++.+.. .... . .....+...++.|-...++
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f-~~~~-~-~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGF-DSVD-S-VKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-TTTC-H-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc-cccc-c-HHHHHHHHHHHHHHHHcCC
Confidence 2224446788899 8999999999999987653 2211 1 1122344455555555555
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.28 Score=51.25 Aligned_cols=139 Identities=7% Similarity=-0.021 Sum_probs=63.3
Q ss_pred HHHHcCCCCChHHHHHHHHh-----------hCCCChHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHHhhhc
Q 008887 378 KFLSKGDKERPIPLLQLALN-----------KEPDNINALILMGQTQLQKGLLEEA----------VEYLECAISKLFLA 436 (550)
Q Consensus 378 ~~~~~g~~~~A~~~~~~aL~-----------~~p~~~~a~~~lg~~~~~~g~~~eA----------~~~~~~al~l~~~~ 436 (550)
.++..+++++|.++-...+. .|.-.+.+|+.++.++...|+..+. ...+-.+++.+
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta--- 221 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA--- 221 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHC---
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH---
Confidence 45667888888887765541 2344567788888888888876653 22333444442
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 437 GHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 437 ~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
...+....+ ...++.+-+.|...+.|++|..+..++. . |............++.+|+++.-.++|.+|.+++..
T Consensus 222 -~lr~D~~~q--a~l~nllLRnYL~~~~y~qA~~lvsk~~--f-P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 222 -SLKHDNETK--AMLINLILRDFLNNGEVDSASDFISKLE--Y-PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp -CSCSSSCHH--HHHHHHHHHHHHHSSCSTTHHHHHHHHC--S-CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hcccCcchh--HHHHHHHHHHHHccCcHHHHHHHHhcCc--C-CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 222221111 1245567888999999999999999975 2 433222223457788999999999999999999999
Q ss_pred HHHcCCCcH
Q 008887 517 AAAHNPQYN 525 (550)
Q Consensus 517 al~~~p~~~ 525 (550)
+++..|.+.
T Consensus 296 A~rkap~~~ 304 (523)
T 4b4t_S 296 AIRKAPHNS 304 (523)
T ss_dssp HTSSCSCSS
T ss_pred HHHhCCcch
Confidence 999887653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.58 Score=54.62 Aligned_cols=135 Identities=12% Similarity=0.028 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh--hhH------
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--EAI------ 445 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~--~~~------ 445 (550)
.+...+...++++-+.+ .+...+.++...+.+|.++...|++++|.++|+++..-. ...+.... ...
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~-~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL-YSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSC-TTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-cccchhhhhhccccccccc
Confidence 45556677777765443 345567888888999999999999999999998874321 00000000 000
Q ss_pred ----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008887 446 ----DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 516 (550)
Q Consensus 446 ----~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 516 (550)
..+...|+.+...+.+.|.++.+++..+.|++...+++. .-....|..+-..+.+.|+|++|...+..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~---~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE---DLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCH---HHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCCh---hhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 001125666778889999999999999999987523332 11224678888999999999999877754
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.72 E-value=0.98 Score=47.21 Aligned_cols=110 Identities=9% Similarity=0.039 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCh----------HHHHHHHHh-----hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008887 367 LTPKELIALSVKFLSKGDKERP----------IPLLQLALN-----KEPD-NINALILMGQTQLQKGLLEEAVEYLECAI 430 (550)
Q Consensus 367 l~~~~l~~la~~~~~~g~~~~A----------~~~~~~aL~-----~~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~~al 430 (550)
+.++.++..+..+-..|+..+. ...+..+++ .|.+ ....++.+-..|.+.+.+++|..+..++.
T Consensus 179 l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 179 INAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp ------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 4555566666666666665542 223333333 2222 35667889999999999999999988873
Q ss_pred HHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCc
Q 008887 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEP 484 (550)
Q Consensus 431 ~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~ 484 (550)
.|............+|++|+++..+++|.+|.+++..|++.. |.+.
T Consensus 259 -------fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~ 304 (523)
T 4b4t_S 259 -------YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNS 304 (523)
T ss_dssp -------SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSS
T ss_pred -------CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Ccch
Confidence 454321223334578899999999999999999999999987 6543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.39 E-value=0.82 Score=43.47 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=59.8
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 008887 458 ACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 532 (550)
Q Consensus 458 ~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~ 532 (550)
.+.+.|+.++|++.++..++.+ |.|. .....|.+.++-.|++++|.+.++.+.+++|+.......+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da-------~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDA-------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 3567899999999999999998 9998 89999999999999999999999999999999987554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.68 E-value=1.3 Score=45.67 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhC--CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKE--PD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~--p~----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
..+|..+...|++.+|.+.+....... .. -.+.+.....+|...+++.+|...++++-..... .+.++ +
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~--~~~~~---~ 215 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK--NPKYE---S 215 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--SSCCH---H
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc--cCCcH---H
Confidence 378999999999999999999986521 11 2567788899999999999999999997543211 22222 2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNL 478 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~ 478 (550)
.....+...|..+...++|.+|..+|.++.+.
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 22335667899999999999999999988765
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.45 E-value=0.46 Score=52.35 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~a 429 (550)
-+...+..++..|+++-|+++.++|....|.+-.+|+.|+.+|...|||+.|+-.+.-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34478888999999999999999999999999999999999999999999999887655
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.99 E-value=1.8 Score=46.65 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA----LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a----~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
.++..+...+...+.+.|...+.+.-+...-+... +..+|.-+...+...++...+.+.... ..+. .
T Consensus 216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~-~-- 286 (618)
T 1qsa_A 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQST-S-- 286 (618)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCH-H--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCCh-H--
Confidence 44566666777778888988888776543333222 223333334445355677777765433 2222 1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 447 LLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 447 ~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
+.+ +++...++.|+++.|..+|++.-... .. .....+.+|+++.+.|+.++|...|+++.+
T Consensus 287 -~~e---~~~r~Alr~~d~~~a~~~~~~l~~~~-~~-------~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 287 -LIE---RRVRMALGTGDRRGLNTWLARLPMEA-KE-------KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp -HHH---HHHHHHHHHTCHHHHHHHHHHSCTTG-GG-------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -HHH---HHHHHHHHCCCHHHHHHHHHHccccc-cc-------cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 111 23334456799999999998754321 22 237789999999999999999999998875
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.28 E-value=0.93 Score=45.97 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l 432 (550)
.+..++..+...|++++|+..+++++..+|-+-.++..+-.++...|+..+|++.|+++-+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33467788899999999999999999999999999999999999999999999999988765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=87.70 E-value=2.8 Score=46.13 Aligned_cols=28 Identities=18% Similarity=0.015 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLA 395 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~a 395 (550)
++....++|..+...|+++.|+.+|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4556669999999999999999999987
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.32 E-value=5.5 Score=45.21 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhC-CCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGL-LEEAVEYLECAISK 432 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~-p~~~~a~~~lg~~~~~~g~-~~eA~~~~~~al~l 432 (550)
....+-..+.+.|+.++|.++|++..+.. .-|...|+.+-..+.+.|+ .++|.+.+++..+.
T Consensus 167 TYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 33355567888999999999999987754 2356778888888888887 47888999888777
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=83.43 E-value=3.6 Score=46.85 Aligned_cols=124 Identities=11% Similarity=0.008 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh-----------
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP----------- 442 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~----------- 442 (550)
.+...++..|+++- ..+.+.--|.++...|.+|.+|...|++++|.++|++|-.-. ..++....
T Consensus 815 ~l~~~L~~~~~~~~----a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl-~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 815 ELVEKLFLFKQYNA----CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL-YSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHHTTCHHH----HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTT-CSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcHHHH----HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-ccCcccccchhhhhhccCc
Confidence 45666666666543 344556678888888999999999999999999999874221 00000000
Q ss_pred -hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 443 -EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 443 -~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
+....+...|......+.+.+.++.+++..+.|++.-.++++. ...+.|..+-+++...|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~---l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED---LSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH---HHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc---chHHHHHHHHHHHhhCC
Confidence 0001122266678888999999999999999999865344431 12245555555554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 550 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-04 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 9e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 3e-09
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
L+ + +G + I + A+ +P +A + +KG + EA + A+
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYY 491
Q EE + + + PE AH
Sbjct: 300 LCPTHADSL------------NNLANIKREQGNIEEAVRLYRKALEVF-PEFAA--AHSN 344
Query: 492 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533
LAS L G+ EA + + A +P + + + N
Sbjct: 345 -----LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 1e-07
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
+ L+ + GD E +EPDN L+L+ Q L+ + + AI
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKW 465
+ +P EA L + G E +
Sbjct: 62 Q-----NPLLAEAYSNLGNVYKERGQLQEAIEHY 90
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 27/169 (15%)
Query: 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434
L F ++G+ I + A+ +P+ ++A I +G + + + AV A+S
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-- 232
Query: 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494
P L Q + I R L+ H+ D
Sbjct: 233 ---SPNHAVVHGNL-------ACVYYEQGLIDLAIDTYRRAIELQP--------HFPDAY 274
Query: 495 VVLASALCNVGRNAEAEKYLRLAAAHNPQYN-------ELLEQLENNDE 536
LA+AL G AEAE A P + + + N +E
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 20/138 (14%)
Query: 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455
+ +P+ A +G +G + A+ + E A++ P +A L
Sbjct: 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINL------- 209
Query: 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLR 515
G ++ +A R +L ++ LA G A R
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSP--------NHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 516 LAAAHNPQYNELLEQLEN 533
A P + + L N
Sbjct: 262 RAIELQPHFPDAYCNLAN 279
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438
+G+ E + L + AL P+ A + Q+G L+EA+ + + AI
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----S 369
Query: 439 PTEPEAIDLLIVA 451
PT +A +
Sbjct: 370 PTFADAYSNMGNT 382
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.0 bits (119), Expect = 2e-07
Identities = 19/152 (12%), Positives = 36/152 (23%), Gaps = 19/152 (12%)
Query: 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439
LS+G ++ + LL A+ P + + + G E A E L +I P
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FP 61
Query: 440 TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 499
L + ++ L E +V +
Sbjct: 62 EYLPGASQL-------RHLVKAAQARKDFAQGAATAKVLGEN-------EELTKSLVSFN 107
Query: 500 ALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 531
+ + + L
Sbjct: 108 LSMVSQDYEQVSELALQIEELRQEKGFLANDT 139
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 7/170 (4%)
Query: 358 KQLKISVEN--LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ 415
K + EN + ++ L +GD + L + A+ ++P ++ A +G TQ +
Sbjct: 6 KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65
Query: 416 KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475
A+ L + A+ + Q + + +
Sbjct: 66 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI-----LRDWLRYTPAY 120
Query: 476 GNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525
+L P E + + +L + E ++ A +P
Sbjct: 121 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 170
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 4e-05
Identities = 20/178 (11%), Positives = 43/178 (24%), Gaps = 24/178 (13%)
Query: 358 KQLKISVENLTPKELIALSVKFLSK--GDKERPIPLLQLALNKEPDNINALILMGQTQLQ 415
+ + N E+ A FL G + + L N + +G +
Sbjct: 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK 132
Query: 416 KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475
+ V+ + L+ G + + + ++
Sbjct: 133 QTHTSAIVKPQSSSC----------SYICQHCLV----HLGDIARYRNQTSQAESYYRHA 178
Query: 476 GNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533
L P + LA + G + Y + A + L+
Sbjct: 179 AQLV-PSNGQPYNQ-------LAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 4e-04
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 20/133 (15%)
Query: 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460
+ +N L G L G +++A++ AI +P L S
Sbjct: 1 EQVNELKEKGNKALSVGNIDDALQCYSEAI--------KLDPHNHVLYSNRSAAYAKKGD 52
Query: 461 RQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 520
Q+ +E+G ++ + + K+ A + R EA++ H
Sbjct: 53 YQKAYEDGCKTVDLKPDWGKGYSRKAAALE------------FLNRFEEAKRTYEEGLKH 100
Query: 521 NPQYNELLEQLEN 533
+L E L+N
Sbjct: 101 EANNPQLKEGLQN 113
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (91), Expect = 6e-04
Identities = 23/151 (15%), Positives = 46/151 (30%), Gaps = 11/151 (7%)
Query: 380 LSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLF 434
++ G+ + L +LAL + P I A ++G+ KG L ++ ++ ++
Sbjct: 23 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE-QMA 81
Query: 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 494
+ Q + E+ L + + + +
Sbjct: 82 RQHDVWHYALW-----SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 136
Query: 495 VVLASALCNVGRNAEAEKYLRLAAAHNPQYN 525
+ A L R EAE R Y
Sbjct: 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQ 167
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 20/170 (11%), Positives = 39/170 (22%), Gaps = 26/170 (15%)
Query: 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE-----------YLECAI 430
+ + + N ++ Q ++ LE
Sbjct: 157 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 216
Query: 431 SKLFLAGHPTEPEAIDLLI-------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483
+ F + + + S + E L+ + EPE
Sbjct: 217 NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQEL----EPEN 272
Query: 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533
L AL + E +Y A +P L+ L +
Sbjct: 273 KWCLLTIIL----LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.4 bits (88), Expect = 9e-04
Identities = 12/131 (9%), Positives = 26/131 (19%), Gaps = 20/131 (15%)
Query: 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQE 463
L G EA AI++ +P +
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALA 59
Query: 464 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 523
+ + +S ++ + EA L+ A + +
Sbjct: 60 DCRRALEL-----------DGQSVKAHFFL----GQCQLEMESYDEAIANLQRAYSLAKE 104
Query: 524 YNELLEQLENN 534
+
Sbjct: 105 QRLNFGDDIPS 115
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 550 | |||
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.66 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.63 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.55 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.48 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.45 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.4 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.36 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.35 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.34 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.34 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.33 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.31 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.31 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.3 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.24 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.24 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.19 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.11 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.11 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.1 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.07 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.07 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.07 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.97 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.97 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.63 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.62 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.58 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.56 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.36 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.05 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.02 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.02 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.7 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.61 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.99 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.01 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 85.16 |
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.1e-15 Score=145.97 Aligned_cols=146 Identities=20% Similarity=0.155 Sum_probs=130.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.++.++.+|..|...|++++|++.|+++++++|+++.+++.+|.+|...|++++|+++|++++++ +|.++ .
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~--- 106 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN-Y--- 106 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT-H---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH-----Hhhhh-h---
Confidence 34567799999999999999999999999999999999999999999999999999999999999 88877 3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc---------------------------------------
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA--------------------------------------- 488 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~--------------------------------------- 488 (550)
+++++|.++..+|++++|++.|+++++.+ |++.....
T Consensus 107 ---a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
T d1xnfa_ 107 ---AHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 182 (259)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred ---hHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHH
Confidence 78899999999999999999999999987 76543211
Q ss_pred ------------------------cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHH
Q 008887 489 ------------------------HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 526 (550)
Q Consensus 489 ------------------------~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 526 (550)
....+++.+|.+|...|++++|+.+|++++..+|++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 244 (259)
T d1xnfa_ 183 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244 (259)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 04567889999999999999999999999999997643
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.6e-15 Score=149.94 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=138.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
.+.....+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|++.+++++.. .|.+. .
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~--- 306 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-----CPTHA-D--- 306 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTCH-H---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-----CCccc-h---
Confidence 56677789999999999999999999999999999999999999999999999999999999999 77766 2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.+..+|.++...|++++|++.|+++++.. |+++ .++..+|.+|.+.|++++|++.|+++++++|++.++
T Consensus 307 ---~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 375 (388)
T d1w3ba_ 307 ---SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFA-------AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp ---HHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCH-------HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred ---hhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 66789999999999999999999999998 8877 999999999999999999999999999999999999
Q ss_pred HHHHHhhHH
Q 008887 528 LEQLENNDE 536 (550)
Q Consensus 528 ~~~l~~~~~ 536 (550)
+.++..+..
T Consensus 376 ~~~lg~~~~ 384 (388)
T d1w3ba_ 376 YSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=7.2e-15 Score=145.57 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+....+|..+...+.+++|+++++++++++|++..+|+.+|.++...| ++++|+++++++++. +|.+.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-----~p~~~------ 112 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----QPKNY------ 112 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----HHhhh------
Confidence 344478889999999999999999999999999999999999999987 599999999999999 88887
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
.+|+++|.++..+|++++|++.++++++.+ |++. .+|..+|.++...|++++|++.++++++++|++..++
T Consensus 113 -~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~-------~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~ 183 (315)
T d2h6fa1 113 -QVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNY-------HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 183 (315)
T ss_dssp -HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred -hHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcch-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHH
Confidence 389999999999999999999999999998 9888 9999999999999999999999999999999999988
Q ss_pred HHHHhh
Q 008887 529 EQLENN 534 (550)
Q Consensus 529 ~~l~~~ 534 (550)
.++..+
T Consensus 184 ~~r~~~ 189 (315)
T d2h6fa1 184 NQRYFV 189 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2e-14 Score=120.63 Aligned_cols=113 Identities=18% Similarity=0.076 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
+++.+.|..++..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..+++++++ +|.++ .
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~-~----- 72 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWG-K----- 72 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-H-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh-----ccchh-h-----
Confidence 467789999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 502 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~ 502 (550)
+++++|.++..+|++++|+..|+++++.+ |+++ .++..++.+..
T Consensus 73 -~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-p~~~-------~~~~~l~~l~~ 116 (117)
T d1elwa_ 73 -GYSRKAAALEFLNRFEEAKRTYEEGLKHE-ANNP-------QLKEGLQNMEA 116 (117)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH-------HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHhC
Confidence 88999999999999999999999999998 9888 88888887654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.4e-14 Score=128.76 Aligned_cols=138 Identities=17% Similarity=0.067 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
.+++.|..+...|++++|++.|++ ..+.++.+++++|.+|...|++++|+++|++|+++ +|+++ .
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-----dp~~~-------~ 71 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLA-------V 71 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-----hhhhh-------h
Confidence 456889999999999999999986 45678899999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccc---------cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKS---------KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 521 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~---------~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 521 (550)
+++++|.++.++|++++|++.|++++... +.+... .....++++++|.++..+|++++|.+.++++++++
T Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 72 AYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999875 443221 11235788999999999999999999999999998
Q ss_pred CCc
Q 008887 522 PQY 524 (550)
Q Consensus 522 p~~ 524 (550)
|+.
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 874
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=5.9e-14 Score=117.62 Aligned_cols=110 Identities=24% Similarity=0.267 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
.-+...|..++..|++++|+..|+++++. +|.++ .+++++|.++..+|++++|++.++++++.+ |++
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~-----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~ 70 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNH-------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDW 70 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcch-------hhhhcccccccccccccccchhhhhHHHhc-cch
Confidence 34567899999999999999999999999 88888 388899999999999999999999999998 988
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
+ .+++.+|.++..+|++++|+..|+++++.+|+++.++..+.+
T Consensus 71 ~-------~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 71 G-------KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp H-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred h-------hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8 999999999999999999999999999999999999998877
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=7.6e-14 Score=123.54 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
++.+...|..++..|+|++|+..|+++++.+|+++.+|+.+|.+|...|++++|+..|++++++ +|.+.
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-----~p~~~------ 78 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI------ 78 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH-----cccch------
Confidence 4566789999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh--cCCHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN--VGRNAEAEK 512 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~--~g~~~eA~~ 512 (550)
.+++.+|.++...|++++|++.+++++++. |++. .++..++.+... .+.+++|..
T Consensus 79 -~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~-p~~~-------~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 79 -KGYYRRAASNMALGKFRAALRDYETVVKVK-PHDK-------DAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 388899999999999999999999999998 9888 788777777543 333444443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.8e-13 Score=134.62 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
...++.|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++ +|.+.
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~------- 87 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-----KPDNQ------- 87 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc-----ccccc-------
Confidence 345799999999999999999999999999999999999999999999999999999999999 88776
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccc-----------------------------------------
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKA----------------------------------------- 488 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~----------------------------------------- 488 (550)
..+..+|.++...|++++|++.+++++... |.......
T Consensus 88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 88 TALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccchhhHHHhc-cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 377889999999999999999999999876 55322110
Q ss_pred ---cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 489 ---HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 489 ---~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
....++..+|.++...|++++|+..+++++..+|++..++..+...
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 215 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 215 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhc
Confidence 0234566777888888888888888888888888877777666553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.1e-13 Score=132.86 Aligned_cols=158 Identities=17% Similarity=0.125 Sum_probs=135.1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 008887 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (550)
Q Consensus 365 ~~l~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~ 444 (550)
++-+++.+..+|..+...|++++|+..|+++++.+|++..++..+|.+|...|++++|++.+++++.. +|.....
T Consensus 49 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ 123 (323)
T d1fcha_ 49 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY-----TPAYAHL 123 (323)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----STTTGGG
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHh-----ccchHHH
Confidence 33467788899999999999999999999999999999999999999999999999999999998876 4332110
Q ss_pred H-----------------------------H-------H--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Q 008887 445 I-----------------------------D-------L--------LIVASQWSGVACIRQEKWEEGIAHLERIGNLKE 480 (550)
Q Consensus 445 ~-----------------------------~-------~--------l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 480 (550)
. + . -..++..+|.++...|++++|+..|+++++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 202 (323)
T d1fcha_ 124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR- 202 (323)
T ss_dssp CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-
Confidence 0 0 0 01246678999999999999999999999997
Q ss_pred CCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhH
Q 008887 481 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENND 535 (550)
Q Consensus 481 p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~ 535 (550)
|++. .++..+|.+|...|++++|++.|+++++++|++.+++..+..+.
T Consensus 203 p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 250 (323)
T d1fcha_ 203 PNDY-------LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 250 (323)
T ss_dssp TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccc-------cchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 8777 89999999999999999999999999999999999887776543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.4e-13 Score=133.38 Aligned_cols=147 Identities=20% Similarity=0.137 Sum_probs=137.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++.+..+|..+...|++++|+..++++.+.++.+...+..+|.++...|++++|++.|++++++ +|.++
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~----- 271 (388)
T d1w3ba_ 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFP----- 271 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCH-----
T ss_pred cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-----
Confidence 56677899999999999999999999999999999999999999999999999999999999999 88876
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
.++..+|.++...|++++|++.+++++... |.+. ..+..+|.++...|++++|++.|+++++++|++..+
T Consensus 272 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T d1w3ba_ 272 --DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHA-------DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp --HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccc-------hhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 377889999999999999999999999997 8777 899999999999999999999999999999999998
Q ss_pred HHHHHhh
Q 008887 528 LEQLENN 534 (550)
Q Consensus 528 ~~~l~~~ 534 (550)
+..+..+
T Consensus 342 ~~~la~~ 348 (388)
T d1w3ba_ 342 HSNLASV 348 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877664
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.9e-13 Score=135.19 Aligned_cols=151 Identities=9% Similarity=0.008 Sum_probs=135.9
Q ss_pred cCCCChHHHHHHHHHHHHcC-CCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 364 VENLTPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 364 ~~~l~~~~l~~la~~~~~~g-~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
+.+-+..++...|..+...| ++++|+..++++++.+|++..+|+.+|.++...|++++|++.+++++++ +|.+.
T Consensus 72 lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~-----dp~n~ 146 (315)
T d2h6fa1 72 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-----DAKNY 146 (315)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----CTTCH
T ss_pred HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh-----hhcch
Confidence 33336667779999988876 5899999999999999999999999999999999999999999999999 88887
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCC------HHHHHHHHHH
Q 008887 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR------NAEAEKYLRL 516 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~------~~eA~~~l~~ 516 (550)
. +|.++|.++...|++++|++.|+++++++ |++. .+|.++|.++...|+ +++|++.+.+
T Consensus 147 -~------a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~-------~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~ 211 (315)
T d2h6fa1 147 -H------AWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN-------SVWNQRYFVISNTTGYNDRAVLEREVQYTLE 211 (315)
T ss_dssp -H------HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred -H------HHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccH-------HHHHHHHHHHHHccccchhhhhHHhHHHHHH
Confidence 3 89999999999999999999999999998 9888 999999999988877 5899999999
Q ss_pred HHHcCCCcHHHHHHHHhh
Q 008887 517 AAAHNPQYNELLEQLENN 534 (550)
Q Consensus 517 al~~~p~~~~~~~~l~~~ 534 (550)
+++++|++..++..+...
T Consensus 212 al~~~P~~~~~~~~l~~l 229 (315)
T d2h6fa1 212 MIKLVPHNESAWNYLKGI 229 (315)
T ss_dssp HHHHSTTCHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHH
Confidence 999999999988766543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=9.4e-13 Score=116.32 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+.+...|..|++.|+|++|+.+|++++++ +|++. .+|+++|.++...|++++|++.|+++++.+ |++
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~ 77 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNA-------IYYGNRSLAYLRTECYGYALGDATRAIELD-KKY 77 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhcccc-----chhhh-------hhhhhhHHHHHhccccchHHHHHHHHHHHc-ccc
Confidence 44667899999999999999999999999 88887 388899999999999999999999999998 988
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
. .++..+|.++..+|++++|...+++++.++|++..+...+.+
T Consensus 78 ~-------~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~ 120 (159)
T d1a17a_ 78 I-------KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 120 (159)
T ss_dssp H-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred h-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8 999999999999999999999999999999999997766654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=7.2e-14 Score=127.78 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=97.9
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
+++++.+.|..++..|++++|+..|+++++.+|+++.+|.++|.+|...|++++|+++|++|+++ +|++.
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-----~p~~~----- 72 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSV----- 72 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-----CCCcH-----
Confidence 56788899999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcc
Q 008887 448 LIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPK 485 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~ 485 (550)
.+++++|.++..+|++++|+..|+++++++ |++..
T Consensus 73 --~a~~~lg~~~~~l~~~~~A~~~~~~al~l~-p~~~~ 107 (201)
T d2c2la1 73 --KAHFFLGQCQLEMESYDEAIANLQRAYSLA-KEQRL 107 (201)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTC
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHH
Confidence 388899999999999999999999999987 76553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1e-12 Score=124.76 Aligned_cols=127 Identities=16% Similarity=0.117 Sum_probs=112.0
Q ss_pred CCCChHHHHHHHHhhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHH
Q 008887 384 DKERPIPLLQLALNKE----PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (550)
Q Consensus 384 ~~~~A~~~~~~aL~~~----p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~ 459 (550)
+.+.|+..+++++... +..+.+++.+|.+|...|++++|+++|++++++ +|+++ .+++++|.++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~p~~~-------~a~~~lg~~~ 81 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDMP-------EVFNYLGIYL 81 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----CCCCH-------HHHhhhchHH
Confidence 3445666667777643 345679999999999999999999999999999 99887 3888999999
Q ss_pred HHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 460 IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 460 ~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
...|++++|++.|+++++.+ |++. .++..+|.+|..+|++++|...++++++.+|++......
T Consensus 82 ~~~g~~~~A~~~~~~al~~~-p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 144 (259)
T d1xnfa_ 82 TQAGNFDAAYEAFDSVLELD-PTYN-------YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW 144 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHH-hhhh-------hhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHH
Confidence 99999999999999999998 9888 999999999999999999999999999999998775443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.9e-12 Score=114.53 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh--------hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE--------AIDLLIVASQWSGVACIRQEKWEEGIAHLERI 475 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~--------~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~a 475 (550)
..+...|..++..|+|++|+..|+++++. .|.... .......++.++|.||.++|++++|+.+++++
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a 88 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW-----LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 88 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----hhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence 44556777777777777777777777777 332221 11122236778999999999999999999999
Q ss_pred hcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHH
Q 008887 476 GNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDE 536 (550)
Q Consensus 476 l~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~ 536 (550)
++++ |+++ .+++.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus 89 l~~~-p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 89 LELD-SNNE-------KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred hhcc-ccch-------hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9998 9888 999999999999999999999999999999999998888777543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=9.1e-13 Score=120.27 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=95.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
+++.+...|..++..|+|++|+.+|++++++ +|.++ . +|.++|.||...|++++|++.|+++++++ |
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~~~-~------~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p 69 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-V------YYTNRALCYLKMQQPEQALADCRRALELD-G 69 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCH-H------HHHHHHHHHHHTTCHHHHHHHHHHHTTSC-T
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-H------HHHhHHHHHhhhhhhhhhhHHHHHHHHhC-C
Confidence 4567889999999999999999999999999 89887 3 88899999999999999999999999998 9
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
++. .+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 70 ~~~-------~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 70 QSV-------KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp TCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 887 999999999999999999999999999988653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.36 E-value=1.2e-12 Score=108.66 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
..++.|..++..|++++|+..|+++++.+|+++.++..+|.++.+.|++++|+.+|++++++ +|.+. .
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~ 85 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI-------A 85 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc-----ccccc-------c
Confidence 45789999999999999999999999999999999999999999999999999999999999 88887 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
+++.+|.+|..+|++++|++.+++.+
T Consensus 86 a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 86 VHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88899999999999999999999975
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=4.8e-12 Score=107.51 Aligned_cols=116 Identities=9% Similarity=0.097 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
..+..+|..++..|+|++|+++|++++++ +|.+. .++.++|.+|..+|++++|++.++++++++ |++
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~ 71 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNM-------TYITNQAAVYFEKGDYNKCRELCEKAIEVG-REN 71 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH-------HHHHhHHHHHHHcCchHHHHHHHHHHHHhC-ccc
Confidence 45668999999999999999999999999 88776 277889999999999999999999999987 877
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
...+.....++..+|.++...+++++|+.+|++++..+++ .+....+.+
T Consensus 72 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 120 (128)
T d1elra_ 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ 120 (128)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 7667777789999999999999999999999999998875 455555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.35 E-value=6.9e-12 Score=110.00 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh----hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCC
Q 008887 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE----AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 406 ~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~----~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p 481 (550)
+...|..+++.|+|++|+..|+++++.........+.. ........+.++|.||.++|++++|+++++++++.+ |
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p 98 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 98 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-c
Confidence 34455556666666666666666665521111111110 011112267789999999999999999999999998 9
Q ss_pred CCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
++. .+++.+|.+|..+|++++|+..|+++++++|++.++...+..+
T Consensus 99 ~~~-------ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 99 NNV-------KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp TCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred hhh-------hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888 9999999999999999999999999999999999998888763
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3e-12 Score=107.72 Aligned_cols=113 Identities=17% Similarity=0.080 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHhcCCCCCC
Q 008887 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR---QEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 407 ~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~---~g~~~eA~~~~~~al~~~~p~~ 483 (550)
..++..+...+++++|++.|++++.+ +|.++ . +++++|.++.+ .+++++|++.|+++++.+ |..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~-----~p~~~-~------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-~~~ 69 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA-----GSVSK-S------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKE 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCCH-H------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh-----CCCCH-H------HHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-CCc
Confidence 46778889999999999999999999 99988 3 88899999986 456668999999999986 532
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhhHHH
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 537 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~~~~ 537 (550)
. ...+++++|.+|.+.|++++|+++|+++++++|++.++......+.+.
T Consensus 70 ~-----~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 70 E-----QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp H-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred h-----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 1 236899999999999999999999999999999999998877764443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.2e-12 Score=107.85 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
..-++|..++..|+|++|+.+|+++++.+|++..++.++|.+|.+.|+|++|++.+++++++ +|.++.....+..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~~~~~~~~~~~a~ 80 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-----GRENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh-----CcccHHHHHHHHH
Confidence 34489999999999999999999999999999999999999999999999999999999999 6766655555556
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
++..+|.++...+++++|+++|++++...
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999874
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=9.6e-12 Score=111.10 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~---------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~ 435 (550)
.+.+.|..++..|++++|+..|+++++..|.. ..++.++|.+|.+.|++++|+.++++++++
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~--- 91 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--- 91 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc---
Confidence 44488999999999999999999999987643 356678999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHH
Q 008887 436 AGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511 (550)
Q Consensus 436 ~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~ 511 (550)
+|++. .+++.+|.++..+|++++|+..|+++++++ |+++ .+...++.+....++..+..
T Consensus 92 --~p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~-------~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 92 --DSNNE-------KGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK-------AAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp --CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred --cccch-------hhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 88887 388899999999999999999999999998 9888 88889999988776665544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.31 E-value=2.7e-11 Score=107.85 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCCh---hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP---EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~---~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
+..+...|..++..|+|++|+..|++++............ .........+.++|.||..+|++++|+.+++++++++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 3456667777888888888888887777663111111000 1112222367789999999999999999999999998
Q ss_pred CCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 480 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 480 ~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
|.+. .+++.+|.+|..+|++++|+..|+++++++|++.++...+...
T Consensus 95 -p~~~-------~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 95 -SANE-------KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141 (168)
T ss_dssp -TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred -cchH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9887 9999999999999999999999999999999999988877663
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.31 E-value=1.9e-11 Score=108.86 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 529 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 529 (550)
.++.++|.++.+.|++++|+..|+++++++ |+++ .+++.+|.+|..+|++++|++.|+++++++|++.++..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~-------~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~ 149 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT-------KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 149 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhh-------hHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 377889999999999999999999999998 9888 99999999999999999999999999999999999988
Q ss_pred HHHhhHH
Q 008887 530 QLENNDE 536 (550)
Q Consensus 530 ~l~~~~~ 536 (550)
.+..+..
T Consensus 150 ~l~~~~~ 156 (169)
T d1ihga1 150 ELLKVKQ 156 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=8.8e-13 Score=111.11 Aligned_cols=113 Identities=11% Similarity=0.037 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 374 ~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
+++..+...+++++|++.|+++++.+|+++.+++++|.++.+.+ ++++|+..|+++++. +|.+... .
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-----~~~~~~~-----~ 73 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEEQR-----D 73 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHHHH-----H
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-----cCCchHH-----H
Confidence 56778889999999999999999999999999999999998754 555799999999887 4433211 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhc
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~ 504 (550)
+++++|.+|.+.|++++|+++|+++++++ |++. .+...++.+..+.
T Consensus 74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~-P~~~-------~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 74 YVFYLAVGNYRLKEYEKALKYVRGLLQTE-PQNN-------QAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhC-cCCH-------HHHHHHHHHHHHH
Confidence 78899999999999999999999999998 9888 7887777766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.29 E-value=7.9e-12 Score=103.48 Aligned_cols=95 Identities=23% Similarity=0.138 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Q 008887 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE 483 (550)
Q Consensus 404 ~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~ 483 (550)
+..+.+|.++.+.|++++|+..|+++++. +|.++ .+++.+|.++...|++++|+.+|+++++.+ |++
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 83 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQK-----EPERE-------EAWRSLGLTQAENEKDGLAIIALNHARMLD-PKD 83 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhccc-----ccccc-------hhhhhhhhhhhhhhhHHHhhcccccccccc-ccc
Confidence 34678999999999999999999999999 88887 388999999999999999999999999998 988
Q ss_pred ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008887 484 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 518 (550)
Q Consensus 484 ~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 518 (550)
. .+++.+|.+|...|++++|.+.+++.+
T Consensus 84 ~-------~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 84 I-------AVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 8 999999999999999999999999876
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.25 E-value=2.5e-11 Score=106.31 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN----------------INALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~----------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 434 (550)
.+.+.|..++..|+|++|+..|+++++..+.. ..++.++|.+|.+.|++++|++++++++++
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-- 96 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-- 96 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--
Confidence 44578999999999999999999999855432 246778999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 435 ~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
+|.+. .+++++|.++...|++++|+..|+++++++ |++. .+...++.+..+++
T Consensus 97 ---~p~~~-------ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~-------~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 97 ---DKNNV-------KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNL-------DIRNSYELCVNKLK 149 (153)
T ss_dssp ---STTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHHHH
T ss_pred ---cchhh-------hhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHH
Confidence 88887 389999999999999999999999999998 9888 88888888776543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.24 E-value=1.3e-11 Score=109.93 Aligned_cols=121 Identities=16% Similarity=0.220 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhh----------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNK----------------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~----------------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 434 (550)
.+...|..++..|++++|+..|+++++. +|....++.++|.+|.+.|++++|+..+++++++
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-- 106 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 106 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence 3447889999999999999999999863 3566778899999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHH
Q 008887 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 511 (550)
Q Consensus 435 ~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~ 511 (550)
+|.+. .+++++|.++...|++++|++.|+++++++ |++. .+...++.++.......++.
T Consensus 107 ---~p~~~-------~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~-------~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 107 ---DPSNT-------KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDK-------AIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp ---CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhh-------hHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 88887 388999999999999999999999999998 9887 88888998887776665554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.24 E-value=6.6e-11 Score=105.27 Aligned_cols=128 Identities=10% Similarity=0.081 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCC---------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPD---------------NINALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~---------------~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~ 434 (550)
+.+.+.|..++..|++++|+..|++++...+. ...++.++|.+|...|++++|+.++++++++
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-- 93 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-- 93 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--
Confidence 34558999999999999999999999974332 2345678999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHH-HHHH
Q 008887 435 LAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE-AEKY 513 (550)
Q Consensus 435 ~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~e-A~~~ 513 (550)
+|.+. .+++++|.++..+|++++|++.|+++++++ |++. .+...++.+....+++.+ ..+.
T Consensus 94 ---~p~~~-------~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~-------~~~~~l~~~~~~~~~~~e~~kk~ 155 (168)
T d1kt1a1 94 ---DSANE-------KGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNK-------AARLQIFMCQKKAKEHNERDRRT 155 (168)
T ss_dssp ---CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccchH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHHhHHHHHHHH
Confidence 88887 388899999999999999999999999998 9888 888899988877765544 3334
Q ss_pred HHHH
Q 008887 514 LRLA 517 (550)
Q Consensus 514 l~~a 517 (550)
|.+.
T Consensus 156 ~~~~ 159 (168)
T d1kt1a1 156 YANM 159 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.2e-10 Score=105.99 Aligned_cols=109 Identities=11% Similarity=0.084 Sum_probs=94.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhh---
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA--- 444 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~--- 444 (550)
+++.++++|..+...|++++|++.|+++++.+|+++.+++++|.++.++|++++|++.|++++.. .+.+...
T Consensus 35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~-----~~~n~~~~~~ 109 (192)
T d1hh8a_ 35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ-----LRGNQLIDYK 109 (192)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCSEEECG
T ss_pred CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHh-----CccCchHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999987 3333210
Q ss_pred ------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 445 ------IDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 445 ------~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
.....++++++|.++...|++++|++.++++++.. ++
T Consensus 110 ~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~-~~ 152 (192)
T d1hh8a_ 110 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK-SE 152 (192)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CS
T ss_pred HhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 00012477899999999999999999999999986 64
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.19 E-value=1.3e-11 Score=107.18 Aligned_cols=112 Identities=18% Similarity=0.110 Sum_probs=95.1
Q ss_pred HHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK----------GLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 379 ~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~----------g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
+.+.+.+++|+..|+++++.+|+++.+++++|.++... +++++|++.|++++++ +|++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-----~P~~~------ 75 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKD------ 75 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-----cchhh------
Confidence 45667799999999999999999999999999999854 5568999999999999 99887
Q ss_pred HHHHHHHHHHHHHhcC-----------HHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHH
Q 008887 449 IVASQWSGVACIRQEK-----------WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 510 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~-----------~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA 510 (550)
.+++++|.+|..+|+ +++|+++|+++++++ |++. ..+..|+.+....+.+.++
T Consensus 76 -~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~-P~~~-------~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 76 -EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ-PDNT-------HYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHTHHHHHHHH
T ss_pred -HHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC-CCHH-------HHHHHHHHHHHHHHHHHHH
Confidence 388899999987764 799999999999998 8877 7888888886555444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.15 E-value=1.3e-10 Score=101.86 Aligned_cols=129 Identities=11% Similarity=0.042 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCC
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDN------------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------------~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~ 440 (550)
+..|..++..|+|++|++.|+++++++|+. ..++.++|.+|...|++++|++.+++++++........
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~ 92 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 92 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence 356889999999999999999999987654 36788999999999999999999999998843322222
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh
Q 008887 441 EPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 503 (550)
Q Consensus 441 ~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~ 503 (550)
.. .......+++++|.+|...|++++|++.|++++++. ++..............++..+.+
T Consensus 93 ~~-~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~-~~~~~~~~~~~~~~~~~~~~l~~ 153 (156)
T d2hr2a1 93 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI-EERKGETPGKERMMEVAIDRIAQ 153 (156)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCCSCCTTHHHHHHHHHHHHHH
T ss_pred cc-ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh-HHhhchHHHHHHHHHHHHHHHHH
Confidence 22 223334478999999999999999999999999986 65554433333344444444433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.11 E-value=9.8e-11 Score=102.72 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=89.8
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh-----hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 008887 404 NALILM--GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE-----AIDLLIVASQWSGVACIRQEKWEEGIAHLERIG 476 (550)
Q Consensus 404 ~a~~~l--g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~-----~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al 476 (550)
.++..+ |..++..|+|++|++.|++++++ +|..++ .......++.++|.+|..+|++++|++.+++++
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i-----~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEI-----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 445544 88899999999999999999999 444332 122233478899999999999999999999999
Q ss_pred cCCCCCC----ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 477 NLKEPEE----PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 477 ~~~~p~~----~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
++. +.. .........+++++|.+|..+|++++|++.|++++++.|+.
T Consensus 83 ~~~-~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 83 HYF-NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHH-HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hcc-cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 864 322 22223345688999999999999999999999999986443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=2.1e-10 Score=111.16 Aligned_cols=150 Identities=11% Similarity=0.037 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC------hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQ-KGLLEEAVEYLECAISKLFLAGHPTEP 442 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~------~~a~~~lg~~~~~-~g~~~eA~~~~~~al~l~~~~~~p~~~ 442 (550)
..+.++|..|...|++++|++.|+++++..+.. ..++..+|.+|.. .|++++|+++|++++++.. ...
T Consensus 78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~-----~~~ 152 (290)
T d1qqea_ 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA-----QDQ 152 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-----HTT
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH-----hcC
Confidence 355689999999999999999999999976543 5678889999866 5999999999999998842 222
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 443 EAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 443 ~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
.......++.++|.++..+|+|++|++.|++++... +.....+......+...+.++...|++++|...++++.+++|
T Consensus 153 -~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 153 -SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred -chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC-ccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 112223478889999999999999999999999987 766655555556678899999999999999999999999998
Q ss_pred CcHH
Q 008887 523 QYNE 526 (550)
Q Consensus 523 ~~~~ 526 (550)
.+..
T Consensus 231 ~~~~ 234 (290)
T d1qqea_ 231 NFAD 234 (290)
T ss_dssp ----
T ss_pred Cccc
Confidence 7654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=1.4e-10 Score=112.60 Aligned_cols=146 Identities=13% Similarity=-0.010 Sum_probs=116.9
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 372 LIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 372 l~~la~~~~~~g~~~~A~~~~~~aL~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
..+.|..|...|++++|++.|+++++.. ++...++..+|.+|.+.|++++|+++|++++++... .. ..
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~-----~~-~~ 113 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH-----RG-QF 113 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TT-CH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhh-----cc-cc
Confidence 3488999999999999999999999963 334578899999999999999999999999999432 22 11
Q ss_pred HHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 446 DLLIVASQWSGVACIR-QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~-~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.....++..+|.++.. .|++++|++.|++++++. +.+. .......++..+|.+|...|++++|...|++++...++.
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~-~~~~-~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~ 191 (290)
T d1qqea_ 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWY-AQDQ-SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH-HhcC-chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence 1222367789988865 599999999999999875 3222 112345779999999999999999999999999988765
Q ss_pred H
Q 008887 525 N 525 (550)
Q Consensus 525 ~ 525 (550)
.
T Consensus 192 ~ 192 (290)
T d1qqea_ 192 R 192 (290)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=6.7e-11 Score=124.03 Aligned_cols=142 Identities=11% Similarity=-0.032 Sum_probs=97.4
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~ 454 (550)
.+......+.|++|+..++++++.+|++..++.++|.++...|++++|...+++++... + . .++.+
T Consensus 92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~-~-----~~~~~ 157 (497)
T d1ya0a1 92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--------C-Q-----HCLVH 157 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH--------H-H-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--------H-H-----HHHHH
Confidence 34455667788899999999999999999999999999999999999999999999882 2 2 26778
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 455 SGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 455 lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
+|.++...|++++|+.+|++|+++. |+++ .+++.||.+|...|++.+|+.+|.+++..+|.+..++.+|...
T Consensus 158 LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~-------~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNG-------QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999998 9988 9999999999999999999999999999999999999999875
Q ss_pred HHHH
Q 008887 535 DEEF 538 (550)
Q Consensus 535 ~~~~ 538 (550)
.+..
T Consensus 230 ~~~~ 233 (497)
T d1ya0a1 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=3e-10 Score=90.69 Aligned_cols=82 Identities=15% Similarity=0.015 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 530 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 530 (550)
-.+.+|.+++++|+|++|+++|++++++. +.+........+++.++|.++.+.|++++|++.|+++++++|++.+++.+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~-~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQL-DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-hhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 45679999999999999999999999987 76666666677899999999999999999999999999999999999999
Q ss_pred HHh
Q 008887 531 LEN 533 (550)
Q Consensus 531 l~~ 533 (550)
+..
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 877
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.07 E-value=2.1e-10 Score=99.33 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=90.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH----------hcCHHHHHHHHHHHhcCCCC
Q 008887 412 TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR----------QEKWEEGIAHLERIGNLKEP 481 (550)
Q Consensus 412 ~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~----------~g~~~eA~~~~~~al~~~~p 481 (550)
.+.+.+.|++|++.|++++++ +|+++ . +++++|.++.. .+++++|++.|+++++++ |
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~-----~P~~~-~------~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P 72 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKS-----NPLDA-D------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-P 72 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-----CTTCH-H------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHccHHHHHHHHHHHHhh-----CCcch-H------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-c
Confidence 456778899999999999999 99998 3 77889988874 456689999999999998 9
Q ss_pred CCccccccchhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCcHHHHHHHHhh
Q 008887 482 EEPKSKAHYYDGLVVLASALCNVGR-----------NAEAEKYLRLAAAHNPQYNELLEQLENN 534 (550)
Q Consensus 482 ~~~~~~~~~~~~~~~La~~~~~~g~-----------~~eA~~~l~~al~~~p~~~~~~~~l~~~ 534 (550)
++. .+++++|.+|..+|+ +++|.++|+++++++|++..++..++..
T Consensus 73 ~~~-------~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 73 KKD-------EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp TCH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhh-------HHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence 888 999999999988764 6999999999999999999999988763
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.00 E-value=2.6e-10 Score=108.96 Aligned_cols=134 Identities=14% Similarity=0.004 Sum_probs=109.8
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHH
Q 008887 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (550)
Q Consensus 376 a~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~l 455 (550)
+...+..|++++|++.|+++++.+|++..++..+|.+|+..|++++|++.|++++++ +|.+. .++..+
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-----~P~~~-------~~~~~l 70 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYL-------PGASQL 70 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGH-------HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCcH-------HHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999 66665 255667
Q ss_pred HHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Q 008887 456 GVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 528 (550)
Q Consensus 456 g~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 528 (550)
+.++...+..+++...+.+.....+|. ....+...+.++...|++++|.+.++++.+..|+....+
T Consensus 71 ~~ll~a~~~~~~a~~~~~~~~~~~~p~-------~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 71 RHLVKAAQARKDFAQGAATAKVLGENE-------ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHHHHHHHHHHHTTSCCCEECCCSCH-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhccccHHHHHHhhhhhcccCch-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 777777777766655554433332132 236777889999999999999999999999999876543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.97 E-value=1.3e-10 Score=114.71 Aligned_cols=157 Identities=11% Similarity=-0.023 Sum_probs=119.5
Q ss_pred hHHH-HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh---------cCC
Q 008887 369 PKEL-IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL---------AGH 438 (550)
Q Consensus 369 ~~~l-~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~---------~~~ 438 (550)
.... ...|..+...+++++|++.++++++.+|++..+++++|.++...|++++|...+++++..... ..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 222 (334)
T d1dcea1 143 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222 (334)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhc
Confidence 3343 367788889999999999999999999999999999999999999887654433333222000 002
Q ss_pred CCChhhHHHHH---------HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHH
Q 008887 439 PTEPEAIDLLI---------VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 509 (550)
Q Consensus 439 p~~~~~~~~l~---------~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~e 509 (550)
+.+........ .++..+|.++...|++++|++.+.++++.+ |.+. .++..+|.+|...|++++
T Consensus 223 ~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~-------~~~~~l~~~~~~~~~~~e 294 (334)
T d1dcea1 223 PNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCL-------LTIILLMRALDPLLYEKE 294 (334)
T ss_dssp SSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHH-------HHHHHHHHHHCTGGGHHH
T ss_pred chhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHH-------HHHHHHHHHHHHCCCHHH
Confidence 22210000000 023347788889999999999999999987 7666 999999999999999999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 510 AEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 510 A~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|+++|+++++++|+...++..++.
T Consensus 295 A~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 295 TLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHH
Confidence 999999999999999999888755
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=6.3e-10 Score=88.76 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Q 008887 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPE 482 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~ 482 (550)
++-++.+|.++++.|+|++|+.+|++|+++. |.++........++.++|.++.+.|++++|+++++++++++ |+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~-----~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~ 78 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQL-----DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PE 78 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----hhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cC
Confidence 4567899999999999999999999999983 32221111122478899999999999999999999999998 98
Q ss_pred CccccccchhHHHHHHHHHHhc
Q 008887 483 EPKSKAHYYDGLVVLASALCNV 504 (550)
Q Consensus 483 ~~~~~~~~~~~~~~La~~~~~~ 504 (550)
++ .++.+++.+...+
T Consensus 79 ~~-------~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 79 HQ-------RANGNLKYFEYIM 93 (95)
T ss_dssp CH-------HHHHHHHHHHHHH
T ss_pred CH-------HHHHHHHHHHHHh
Confidence 88 8888887765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=2.7e-09 Score=103.81 Aligned_cols=149 Identities=16% Similarity=0.058 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 369 ~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~-----~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
++...-.|..++..|++++|+++++++++..|++ ..++..+|.+|...|++++|+..|+++++.. +..+.
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~ 86 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----RQHDV 86 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----Hhhcc
Confidence 3444467889999999999999999999999886 3578899999999999999999999999983 33331
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC-ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008887 444 AIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEE-PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~-~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 522 (550)
. .....++.+++.++...|++++|.+.+.+++... +.. ..........+..+|.++...|++++|...++++....+
T Consensus 87 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~ 164 (366)
T d1hz4a_ 87 W-HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI-NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 164 (366)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence 2 2223377889999999999999999999998764 222 112223446778899999999999999999999998765
Q ss_pred Cc
Q 008887 523 QY 524 (550)
Q Consensus 523 ~~ 524 (550)
..
T Consensus 165 ~~ 166 (366)
T d1hz4a_ 165 SY 166 (366)
T ss_dssp TS
T ss_pred hh
Confidence 43
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=9.9e-09 Score=100.90 Aligned_cols=139 Identities=12% Similarity=0.037 Sum_probs=116.2
Q ss_pred HHHcCC-CCChHHHHHHHHhhCCCChHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q 008887 379 FLSKGD-KERPIPLLQLALNKEPDNINALILMGQTQLQK----------GLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (550)
Q Consensus 379 ~~~~g~-~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~----------g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~ 447 (550)
....++ .++|++.++++++.+|++..+|+.++.++... |++++|+.+++++++. +|.+. .
T Consensus 38 ~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~-----~pk~~-~--- 108 (334)
T d1dcea1 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSY-G--- 108 (334)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH-H---
T ss_pred HHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh-----CCCcH-H---
Confidence 334444 47899999999999999999998877776554 4488999999999999 88887 3
Q ss_pred HHHHHHHHHHHHHHhcC--HHHHHHHHHHHhcCCCCCCccccccchhHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 448 LIVASQWSGVACIRQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGL-VVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 448 l~~a~~~lg~~~~~~g~--~~eA~~~~~~al~~~~p~~~~~~~~~~~~~-~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
+++.+|.++...++ +++|+..++++++.+ |... .++ ...|.++...|++++|+..++++++.+|++
T Consensus 109 ---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~-------~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~ 177 (334)
T d1dcea1 109 ---TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNF-------HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 177 (334)
T ss_dssp ---HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCH-------HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred ---HHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhh-------hhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence 77788888777664 899999999999997 7665 664 577889999999999999999999999999
Q ss_pred HHHHHHHHhhHHH
Q 008887 525 NELLEQLENNDEE 537 (550)
Q Consensus 525 ~~~~~~l~~~~~~ 537 (550)
..++..+..+...
T Consensus 178 ~~a~~~l~~~~~~ 190 (334)
T d1dcea1 178 YSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888775443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=2.9e-07 Score=89.16 Aligned_cols=137 Identities=8% Similarity=-0.080 Sum_probs=112.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~-~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~ 446 (550)
++.-....+......|++++|...|+++++..|.+. .+|..++......|++++|.+.|+++++. .|... .
T Consensus 98 ~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~-----~~~~~-~-- 169 (308)
T d2onda1 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTRH-H-- 169 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTCCT-H--
T ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCcH-H--
Confidence 334455788888899999999999999999988765 47889999999999999999999999888 67665 2
Q ss_pred HHHHHHHHHHHHH-HHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 008887 447 LLIVASQWSGVAC-IRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 524 (550)
Q Consensus 447 ~l~~a~~~lg~~~-~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 524 (550)
.+...+... ...|+.+.|...|+++++.. |+++ ..|..++..+...|+.++|+..|+++++..|..
T Consensus 170 ----~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~-------~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 170 ----VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP-------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp ----HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCH-------HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred ----HHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 334455543 34688999999999999987 8777 889999999999999999999999999977644
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.62 E-value=2e-07 Score=82.95 Aligned_cols=116 Identities=18% Similarity=0.019 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 008887 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (550)
Q Consensus 370 ~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~ 449 (550)
+.+.+.|......|++++|++.|.+|+++.+++....... ++|-. .+...+ . ....
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w~~-----~~r~~l-----------~-~~~~ 67 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQFVE-----PFATAL-----------V-EDKV 67 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STTHH-----HHHHHH-----------H-HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHHHH-----HHHHHH-----------H-HHHH
Confidence 4556788888888999999999999998888876432211 11211 111112 0 1111
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 450 VASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 450 ~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
.++.+++.++...|++++|+.+++++++.+ |.+. .+|..++.+|.+.|++++|++.|+++
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e-------~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYRE-------PLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccH-------HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 377789999999999999999999999998 9888 99999999999999999999999997
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=3.7e-08 Score=102.59 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~ 450 (550)
...++|..+...|++++|...++++++.++. .++..+|.++...|++++|+.+|++|+++ +|+++ .
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-----~P~~~-~------ 187 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQL-----VPSNG-Q------ 187 (497)
T ss_dssp ---------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTBS-H------
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCch-H------
Confidence 3447777888888888888888888876653 67788888888888888888888888888 77777 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcC
Q 008887 451 ASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 505 (550)
Q Consensus 451 a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g 505 (550)
+++++|.++...|++.+|+.+|.+++... +..+ .++.+|+.++.+..
T Consensus 188 ~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~-------~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 188 PYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFP-------AASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCH-------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCH-------HHHHHHHHHHHHhh
Confidence 77888888888888888888888888887 6666 77777777776544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.58 E-value=1.8e-07 Score=83.29 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=65.5
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 008887 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIA 470 (550)
Q Consensus 391 ~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~ 470 (550)
...+.....+....++..++.++...|++++|+.+++++++. +|.+. . +|..++.++...|++++|++
T Consensus 55 ~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-----~P~~e-~------~~~~l~~al~~~Gr~~eAl~ 122 (179)
T d2ff4a2 55 VEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-----HPYRE-P------LWTQLITAYYLSDRQSDALG 122 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-H------HHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-----CCccH-H------HHHHHHHHHHHhcCHHHHHH
Confidence 344455566677899999999999999999999999999999 88887 3 88899999999999999999
Q ss_pred HHHHHhc
Q 008887 471 HLERIGN 477 (550)
Q Consensus 471 ~~~~al~ 477 (550)
.|+++.+
T Consensus 123 ~y~~~~~ 129 (179)
T d2ff4a2 123 AYRRVKT 129 (179)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999743
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=6.9e-07 Score=86.43 Aligned_cols=131 Identities=10% Similarity=-0.008 Sum_probs=113.2
Q ss_pred CCCChHHHHHHHHhh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHh
Q 008887 384 DKERPIPLLQLALNK-EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ 462 (550)
Q Consensus 384 ~~~~A~~~~~~aL~~-~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~ 462 (550)
..++|...|+++++. .|++...|..++..+...|++++|...|+++++. .|.+... .|..++....+.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-----~~~~~~~------~w~~~~~~~~~~ 147 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTL------VYIQYMKFARRA 147 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHH------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-----hcCChHH------HHHHHHHHHHHc
Confidence 456789999999984 7888999999999999999999999999999988 7766522 667788899999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Q 008887 463 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL-CNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 533 (550)
Q Consensus 463 g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~-~~~g~~~eA~~~l~~al~~~p~~~~~~~~l~~ 533 (550)
|++++|++.|+++++.. |.+. ..+...|... ...|+.+.|...|++++..+|++...+....+
T Consensus 148 ~~~~~ar~i~~~al~~~-~~~~-------~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~ 211 (308)
T d2onda1 148 EGIKSGRMIFKKAREDA-RTRH-------HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp HCHHHHHHHHHHHHTST-TCCT-------HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhC-CCcH-------HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999999997 8777 7888888764 45689999999999999999999987766655
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=4e-06 Score=80.55 Aligned_cols=140 Identities=12% Similarity=-0.003 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhH
Q 008887 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD-----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (550)
Q Consensus 371 ~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~-----~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~ 445 (550)
....+|..+...|+++.|...+++++...+. ...++...+..+...+++.++...+.++..... ......
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-----~~~~~~ 209 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG-----NGKYHS 209 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-----TSCCCH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-----HhcccC
Confidence 3447899999999999999999999986543 356778899999999999999999999988842 111112
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 446 DLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 446 ~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
.....++..++..+...|++++|.++++++++.. +.+. ......+.++|.+|...|++++|...+++++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 279 (366)
T d1hz4a_ 210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE-FANN---HFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC-CTTC---GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc-cccc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222356667888888888888888888888775 5433 22335566777777777777777777777764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.05 E-value=1.1e-05 Score=67.43 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=90.4
Q ss_pred CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH-
Q 008887 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR- 461 (550)
Q Consensus 383 g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~- 461 (550)
.|+++|+.+|+++.+.. ++.+.+.+|. ....+.++|+++++++.+. .++ .+.+.+|..|..
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~~-------~a~~~Lg~~y~~g 68 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL-------NSG-------NGCRFLGDFYENG 68 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT-------TCH-------HHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc-------cch-------hhhhhHHHhhhhc
Confidence 36788999999998764 6667777775 4567899999999999877 122 277789999876
Q ss_pred ---hcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 008887 462 ---QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLRLAAAHNP 522 (550)
Q Consensus 462 ---~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~~~l~~al~~~p 522 (550)
..++++|+++|+++.+..+ + .+.+.||.+|.. ..+.++|..+|+++.+...
T Consensus 69 ~~~~~d~~~A~~~~~~aa~~g~---~-------~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 69 KYVKKDLRKAAQYYSKACGLND---Q-------DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTC---H-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccchhhHHHHHHHhhhhccCc---c-------hHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 5679999999999998752 2 889999999987 5689999999999988653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.02 E-value=6.4e-05 Score=70.01 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 008887 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPE 443 (550)
Q Consensus 368 ~~~~l~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p~~~~ 443 (550)
+|++++++|..++..||+++|+++|+++.+. ++..+++.||.+|.. ..++..|..+++++... .++
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-------~~~- 70 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------NYS- 70 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-------ccc-
Confidence 5889999999999999999999999999765 689999999999998 78999999999998776 122
Q ss_pred hHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhcCC
Q 008887 444 AIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 444 ~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~~~ 479 (550)
.+...+|..+.. .++.++|...++++.+..
T Consensus 71 ------~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 71 ------NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp ------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ------chhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence 255567777654 568888999999888764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.02 E-value=1.3e-05 Score=65.33 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHh---cCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Q 008887 451 ASQWSGVACIRQ---EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 527 (550)
Q Consensus 451 a~~~lg~~~~~~---g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 527 (550)
+.+++|.++.+. .+.++|+..++++++.+ |.+. -+.+++||.+|.++|++++|.++++++++++|++..+
T Consensus 37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~------rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRR------RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGH------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 777899999865 45569999999999875 5331 2799999999999999999999999999999999998
Q ss_pred HHHHHhhH
Q 008887 528 LEQLENND 535 (550)
Q Consensus 528 ~~~l~~~~ 535 (550)
....+.+.
T Consensus 110 ~~L~~~Ie 117 (124)
T d2pqrb1 110 GALKSMVE 117 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665533
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.78 E-value=9.2e-05 Score=60.20 Aligned_cols=70 Identities=6% Similarity=0.033 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Q 008887 403 INALILMGQTQLQKGL---LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 403 ~~a~~~lg~~~~~~g~---~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~ 479 (550)
.++.+++|.++.+..+ .++|+..++++++. +|.+. . +++|++|..|++.|+|++|.++++++++++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~-r-----d~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRR-R-----ECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGH-H-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhH-H-----HHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 5778888888887654 45788888888877 55544 2 278889999999999999999999999997
Q ss_pred CCCCc
Q 008887 480 EPEEP 484 (550)
Q Consensus 480 ~p~~~ 484 (550)
|++.
T Consensus 104 -P~n~ 107 (124)
T d2pqrb1 104 -RNNK 107 (124)
T ss_dssp -TTCH
T ss_pred -CCcH
Confidence 8776
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.70 E-value=2.5e-05 Score=73.46 Aligned_cols=86 Identities=19% Similarity=0.110 Sum_probs=73.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCcccccc
Q 008887 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAH 489 (550)
Q Consensus 410 g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~ 489 (550)
+.-.+..|++++|++.++++++. +|.+. . ++..+|.+++..|++++|++.|+++++++ |++.
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~-----~P~d~-~------ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~----- 64 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKA-----SPKDA-S------LRSSFIELLCIDGDFERADEQLMQSIKLF-PEYL----- 64 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT-----CTTCH-H------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGH-----
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH-----CCCCH-H------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcH-----
Confidence 34566789999999999999999 99988 3 78899999999999999999999999998 8776
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHH
Q 008887 490 YYDGLVVLASALCNVGRNAEAEKYLR 515 (550)
Q Consensus 490 ~~~~~~~La~~~~~~g~~~eA~~~l~ 515 (550)
..+..++.++...++.+++...+.
T Consensus 65 --~~~~~l~~ll~a~~~~~~a~~~~~ 88 (264)
T d1zbpa1 65 --PGASQLRHLVKAAQARKDFAQGAA 88 (264)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred --HHHHHHHHHHHhccccHHHHHHhh
Confidence 888888988887777766655443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.61 E-value=0.00028 Score=65.44 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=81.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhc
Q 008887 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR----QEKWEEGIAHLERIGN 477 (550)
Q Consensus 402 ~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg~~~~~----~g~~~eA~~~~~~al~ 477 (550)
||.+++.+|..+...+|+++|+++|+++.+. .+. .+.++||.+|.. ..++.+|..+++++.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------g~~-------~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KEN-------SGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCH-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------CCH-------HHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 5789999999999999999999999999877 122 378889999987 7799999999999887
Q ss_pred CCCCCCccccccchhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 008887 478 LKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLRLAAAHNPQ 523 (550)
Q Consensus 478 ~~~p~~~~~~~~~~~~~~~La~~~~~----~g~~~eA~~~l~~al~~~p~ 523 (550)
.. ++ .+...+|.++.. .++.++|...++++....+.
T Consensus 67 ~~---~~-------~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~ 106 (265)
T d1ouva_ 67 LN---YS-------NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA 106 (265)
T ss_dssp TT---CH-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred cc---cc-------chhhccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence 64 22 778888888765 56889999999998876543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.99 E-value=0.0018 Score=53.35 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=69.3
Q ss_pred HcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHH
Q 008887 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (550)
Q Consensus 381 ~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l~~a~~~lg 456 (550)
...++++|+.+++++.+. +++.+.+.+|.+|.. ..|+++|+++|+++.+.. ++ .+.+++|
T Consensus 35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-------~~-------~a~~~Lg 98 (133)
T d1klxa_ 35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-------DQ-------DGCLILG 98 (133)
T ss_dssp TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------CH-------HHHHHHH
T ss_pred cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-------cc-------hHHHHHH
Confidence 345677899999998764 689999999999987 678999999999998871 22 2777899
Q ss_pred HHHHH----hcCHHHHHHHHHHHhcCC
Q 008887 457 VACIR----QEKWEEGIAHLERIGNLK 479 (550)
Q Consensus 457 ~~~~~----~g~~~eA~~~~~~al~~~ 479 (550)
.+|.. ..+.++|+++|+++.+..
T Consensus 99 ~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 99 YKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 99887 568999999999999886
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.01 E-value=2.2 Score=41.42 Aligned_cols=133 Identities=12% Similarity=-0.068 Sum_probs=89.9
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------hhcCCC-------
Q 008887 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL--------FLAGHP------- 439 (550)
Q Consensus 375 la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~lg~~~~~~g~~~eA~~~~~~al~l~--------~~~~~p------- 439 (550)
.+...+..++...+...++..-..........|.+|..+...|+.++|...|+++.... ...|.|
T Consensus 291 ~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~ 370 (450)
T d1qsaa1 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDK 370 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCC
Confidence 33345667788877777765433333457888999999999999999999998875310 011111
Q ss_pred -CChhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008887 440 -TEPEAIDLLIVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 517 (550)
Q Consensus 440 -~~~~~~~~l~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 517 (550)
................+..++..|+..+|...+..+++.. ++ .-...+|....+.|.++.|+....++
T Consensus 371 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~---~~-------~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SK-------TEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CH-------HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC---CH-------HHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 0000000000122346778899999999999998887653 22 56778899999999999999887765
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=85.16 E-value=4.5 Score=39.03 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhCCCChHHHHHH----HHHHHHcCCHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q 008887 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILM----GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (550)
Q Consensus 373 ~~la~~~~~~g~~~~A~~~~~~aL~~~p~~~~a~~~l----g~~~~~~g~~~eA~~~~~~al~l~~~~~~p~~~~~~~~l 448 (550)
...+...+...+.+.|...+...-...+.....+... +..+...+..+.+...+...... ..+...
T Consensus 218 ~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~------~~~~~~---- 287 (450)
T d1qsaa1 218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSL---- 287 (450)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHH----
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc------ccchHH----
Confidence 3556666666788888888888777665554444333 33333456677777777665444 222211
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008887 449 IVASQWSGVACIRQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 519 (550)
Q Consensus 449 ~~a~~~lg~~~~~~g~~~eA~~~~~~al~~~~p~~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~ 519 (550)
....++. ....+++..+...++..-. .+. ......|.+|+++.+.|+.++|...|..+..
T Consensus 288 --~~w~~~~-al~~~~~~~~~~~~~~l~~-----~~~---~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 288 --IERRVRM-ALGTGDRRGLNTWLARLPM-----EAK---EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp --HHHHHHH-HHHHTCHHHHHHHHHHSCT-----TGG---GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --HHHHHHH-HHHcCChHHHHHHHHhcCc-----ccc---cHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 1222343 4567899998888876422 221 1237889999999999999999999998765
|