Citrus Sinensis ID: 008888

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

MFFRELDYIYAVNIFSVISSPEVDSFWFSTLLVYDISALVEALSAIILIVLFLMQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLLGGTVLCITGSEALFADLGHFNRSSIQMAFLFTIYPSLVLTYAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSVVLDYFPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTILLTLVMIVIWRTPSLLVALYFLVFFTMEGVYVSAVFTKIPEGGWIPFAISFFLAFIMFGWFNGRQKKIEYELTHKIDLERLGTLLSDPGVQRVPGLCFFYTNIHQDGLTPILGHYIKNMRSLHKVTVFTTLRYLLVPRVAPEERIIVRKLGLKGVYGCVIQYGYADTLNLEGNDFVNQVTDCLREHIEKYLDCLPSNPVDIQEEISALEEAKLSDVIHVRGKTRFYIGKNCKRFDRIMLAFYEVLHSNCRSALPALSVPLSQRIEVGMLYEA

ccccccccccHHHHHHHHccccccccccccccccccccEEHHHHHHHHHHHHHHccccccHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHccccEEEEEccHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccEEEHHHHHHHHHHHHHHEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccEEEEEcccccccccHHHHHHHHHcccccEEEEEEEEEEEccccccccccEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEc

cccccccccHHHHHHHHHcccEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHcccccEHHHcHEEEEEcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccEEEcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccEEEHHHHHccccHHHHHHHccccccEEcccEEEEEHHHHHccccHHHHHHHccccccEEEEEEEEEEEcccccccHHHEEEEEccccHHHEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccEEEEEEcEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEcccHHEEEEEEEEEc

MFFRELDYIYAVNIFSvisspevdsfWFSTLLVYDISALVEALSAIILIVLFLMQKfgtsrvsflfspimgawtfstplvgIYSIIHHYpgifkalsphytfhffwrkgkegwllLGGTVLCITGSEALFADLGHFNRSSIQMAFLFTIYPSLVLTYAGQTAylirhpndhedgfykfipksvywpIFIIATLAAIVASQSLISATFSVIkqsvvldyfprvkvvhtssnkegevyspeVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTILLTLVMIVIWRTPSLLVALYFLVFFTMEGVYVSAVftkipeggwipFAISFFLAFIMFGWFNGRQKKIEYELTHKIDLErlgtllsdpgvqrvpglcffytnihqdgltpILGHYIKNMRSLHKVTVFTTLRYllvprvapeeRIIVRKLGLKGVYGCVIQYgyadtlnlegndFVNQVTDCLREHIEKYldclpsnpvdIQEEISALEeaklsdvihvrgktrfyigkncKRFDRIMLAFYEVLHSNCrsalpalsvplsqrievgmlyea

MFFRELDYIYAVNIFSVISSPEVDSFWFSTLLVYDISALVEALSAIILIVLFLMQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLLGGTVLCITGSEALFADLGHFNRSSIQMAFLFTIYPSLVLTYAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSVVLDYFPRVKVvhtssnkegevysPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTILLTLVMIVIWRTPSLLVALYFLVFFTMEGVYVSAVFTKIPEGGWIPFAISFFLAFIMFGWFNGRQKKIEYELTHKIDLERLGTLLSDPGVQRVPGLCFFYTNIHQDGLTPILGHYIKNMRSLHKVTVFTTLRyllvprvapeerIIVRKLGLKGVYGCVIQYGYADTLNLEGNDFVNQVTDCLREHIEKYLDCLPSNPVDIQEEISALeeaklsdvihvrgktrfyigknckRFDRIMLAFYEVLHSNCRSalpalsvplsqriEVGMLYEA

MFFRELDYIYAVNIFSVISSPEVDSFWFSTLLVYDISALVEALSAIILIVLFLMQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLLGGTVLCITGSEALFADLGHFNRSSIQMAFLFTIYPSLVLTYAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSVVLDYFPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGvvvslvmlittilltlvmiviWRTPSLLVALYFLVFFTMEGVYVSAVFTKIPEGGWIPFAISFFLAFIMFGWFNGRQKKIEYELTHKIDLERLGTLLSDPGVQRVPGLCFFYTNIHQDGLTPILGHYIKNMRSLHKVTVFTTLRYLLVPRVAPEERIIVRKLGLKGVYGCVIQYGYADTLNLEGNDFVNQVTDCLREHIEKYLDCLPSNPVDIQEEISALEEAKLSDVIHVRGKTRFYIGKNCKRFDRIMLAFYEVLHSNCRSALPALSVPLSQRIEVGMLYEA

*FFRELDYIYAVNIFSVISSPEVDSFWFSTLLVYDISALVEALSAIILIVLFLMQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLLGGTVLCITGSEALFADLGHFNRSSIQMAFLFTIYPSLVLTYAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSVVLDYFPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTILLTLVMIVIWRTPSLLVALYFLVFFTMEGVYVSAVFTKIPEGGWIPFAISFFLAFIMFGWFNGRQKKIEYELTHKIDLERLGTLLSDPGVQRVPGLCFFYTNIHQDGLTPILGHYIKNMRSLHKVTVFTTLRYLLVPRVAPEERIIVRKLGLKGVYGCVIQYGYADTLNLEGNDFVNQVTDCLREHIEKYLDCLPSNPVDIQEEISALEEAKLSDVIHVRGKTRFYIGKNCKRFDRIMLAFYEVLHSNCRSALPALSVPLSQRIEVGM****

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oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		550	2.2.26 [Sep-21-2011]
Q67UC7		707	Probable potassium transp	yes	no	0.92	0.715	0.701	0.0
Q6YSA9		697	Probable potassium transp	no	no	0.907	0.715	0.669	0.0
Q84YJ9		739	Potassium transporter 26	no	no	0.901	0.671	0.470	1e-130
Q5JMH0		748	Potassium transporter 6 O	no	no	0.909	0.668	0.447	1e-122
O22397		712	Potassium transporter 1 O	yes	no	0.914	0.706	0.395	1e-108
Q9M7K4		785	Potassium transporter 5 O	no	no	0.923	0.647	0.373	1e-105
Q8H3P9		811	Potassium transporter 7 O	no	no	0.767	0.520	0.441	1e-104
O80739		827	Putative potassium transp	no	no	0.963	0.640	0.357	1e-102
Q9M7J9		781	Potassium transporter 8 O	no	no	0.910	0.641	0.371	1e-101
Q5ZC87		808	Probable potassium transp	no	no	0.801	0.545	0.412	1e-101

>sp\|Q67UC7\|HAK17_ORYSJ Probable potassium transporter 17 OS=Oryza sativa subsp. japonica GN=HAK17 PE=2 SV=2	Back alignment and function desciption

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/512 (70%), Positives = 428/512 (83%), Gaps = 6/512 (1%)

Query: 39  LVEALSAIILIVLFLMQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSP 98
           +VEALSA ILI LFL+QK+GTS+VSFLFSPIM AWTF+TP++G+YSI+H+YPGIFKA+SP
Sbjct: 200 VVEALSAAILIGLFLLQKYGTSKVSFLFSPIMAAWTFTTPIIGLYSIVHYYPGIFKAISP 259

Query: 99  HYTFHFFWRKGKEGWLLLGGTVLCITGSEALFADLGHFNRSSIQMAFLFTIYPSLVLTYA 158
           +Y  HFF R  ++GW LLGGTVLCITG+EA+FADLGHF++ +IQ+AFL +IYPSLVLTYA
Sbjct: 260 YYIVHFFLRNKRQGWQLLGGTVLCITGAEAMFADLGHFSKKAIQIAFLSSIYPSLVLTYA 319

Query: 159 GQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSVVLDY 218
           GQTAYLI + ND  DGFYKF+P+ VYWP+F++ATLAAIVASQSLISATFSVIKQSVVLDY
Sbjct: 320 GQTAYLINNVNDFGDGFYKFVPRPVYWPMFVVATLAAIVASQSLISATFSVIKQSVVLDY 379

Query: 219 FPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLITTI 278
           FPRVKVVHTS +KEGEVYSPE+NYILM+LCV VIL FG GK IGNAFGVVV +VMLITT+
Sbjct: 380 FPRVKVVHTSQHKEGEVYSPEINYILMVLCVGVILGFGGGKAIGNAFGVVVIMVMLITTV 439

Query: 279 LLTLVMIVIWRTPSLLVALYFLVFFTMEGVYVSAVFTKIPEGGWIPFAISFFLAFIMFGW 338
           LLTLVMI+IWRTP +L  LYF+ FF MEG YVSAVFTKIPEGGW+PFA+S  LA IMFGW
Sbjct: 440 LLTLVMIIIWRTPLVLAGLYFVPFFIMEGAYVSAVFTKIPEGGWLPFAVSITLAMIMFGW 499

Query: 339 FNGRQKKIEYELTHKIDLERLGTLLSDPGVQRVPGLCFFYTNIHQDGLTPILGHYIKNMR 398
           + GRQ+K EYE+T+K+ LE LG LL+ P VQRVPGLCFFY+NI QDGLTPIL HYIKNM 
Sbjct: 500 YYGRQRKFEYEMTNKVSLEHLGELLARPEVQRVPGLCFFYSNI-QDGLTPILSHYIKNMS 558

Query: 399 SLHKVTVFTTLRYLLVPRVAPEERIIVRKLGLKGVYGCVIQYGYADTLNLE-GNDFVNQV 457
           SLH VT+F TLR LLV +V   +RI++ +LG  GVYGC +QYGYAD L+LE G+D   QV
Sbjct: 559 SLHTVTIFVTLRSLLVAKVDQSKRILINRLGPNGVYGCTVQYGYADNLSLEGGDDLAAQV 618

Query: 458 TDCLREHIEKYLDCLPSNPVDIQEEISALEEAKLSDVIHVRGKTRFYIGKNCKRFDRIML 517
           T CL+ HI+   D   S     +EE++ LE A+L+ V+HVRGK RFY+G++   FD+IML
Sbjct: 619 TSCLQWHIQMDTDGRRSP----EEEMAQLEAARLAGVVHVRGKMRFYVGEDAGWFDKIML 674

Query: 518 AFYEVLHSNCRSALPALSVPLSQRIEVGMLYE 549
            FYE LH  CRSALP L +PL QR+E+GMLY+
Sbjct: 675 GFYEFLHGICRSALPVLGMPLQQRVEIGMLYK 706

High-affinity potassium transporter.
Oryza sativa subsp. japonica (taxid: 39947)

>sp\|Q6YSA9\|HAK4_ORYSJ Probable potassium transporter 4 OS=Oryza sativa subsp. japonica GN=HAK4 PE=2 SV=1	Back alignment and function description

>sp\|Q84YJ9\|HAK26_ORYSJ Potassium transporter 26 OS=Oryza sativa subsp. japonica GN=HAK26 PE=2 SV=1	Back alignment and function description

>sp\|Q5JMH0\|HAK6_ORYSJ Potassium transporter 6 OS=Oryza sativa subsp. japonica GN=HAK6 PE=2 SV=1	Back alignment and function description

>sp\|O22397\|POT1_ARATH Potassium transporter 1 OS=Arabidopsis thaliana GN=POT1 PE=1 SV=2	Back alignment and function description

>sp\|Q9M7K4\|POT5_ARATH Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1	Back alignment and function description

>sp\|Q8H3P9\|HAK7_ORYSJ Potassium transporter 7 OS=Oryza sativa subsp. japonica GN=HAK7 PE=2 SV=3	Back alignment and function description

>sp\|O80739\|POT12_ARATH Putative potassium transporter 12 OS=Arabidopsis thaliana GN=POT12 PE=1 SV=2	Back alignment and function description

>sp\|Q9M7J9\|POT8_ARATH Potassium transporter 8 OS=Arabidopsis thaliana GN=POT8 PE=2 SV=2	Back alignment and function description

>sp\|Q5ZC87\|HAK3_ORYSJ Probable potassium transporter 3 OS=Oryza sativa subsp. japonica GN=HAK3 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		550
255561773		733	Potassium transporter, putative [Ricinus	0.932	0.699	0.848	0.0
224108187		679	predicted protein [Populus trichocarpa]	0.929	0.752	0.828	0.0
224101953		688	predicted protein [Populus trichocarpa]	0.925	0.739	0.839	0.0
356525022		723	PREDICTED: probable potassium transporte	0.930	0.708	0.815	0.0
38194466		718	KUP-related potassium transporter [Lotus	0.932	0.714	0.797	0.0
225424516		685	PREDICTED: probable potassium transporte	0.92	0.738	0.818	0.0
297737559		641	unnamed protein product [Vitis vinifera]	0.909	0.780	0.814	0.0
357153858		780	PREDICTED: probable potassium transporte	0.923	0.651	0.701	0.0
218202247		707	hypothetical protein OsI_31583 [Oryza sa	0.92	0.715	0.703	0.0
51535869		689	putative HAK4 [Oryza sativa Japonica Gro	0.92	0.734	0.701	0.0

>gi\|255561773\|ref\|XP_002521896.1\| Potassium transporter, putative [Ricinus communis] gi\|223538934\|gb\|EEF40532.1\| Potassium transporter, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/514 (84%), Positives = 474/514 (92%), Gaps = 1/514 (0%)

Query: 37  SALVEALSAIILIVLFLMQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKAL 96
            +LVEALSA +LIVLFL+Q FGTSRVSF+FSPIMGAWT  TPLVGIYSI  HYPGIFKAL
Sbjct: 221 KSLVEALSAAVLIVLFLLQTFGTSRVSFVFSPIMGAWTLFTPLVGIYSITQHYPGIFKAL 280

Query: 97  SPHYTFHFFWRKGKEGWLLLGGTVLCITGSEALFADLGHFNRSSIQMAFLFTIYPSLVLT 156
           SPHY FHFFWR GKEGWL LGGT+LCITGSEA+FADLGHFNR SIQMAFLFTIYPSLVLT
Sbjct: 281 SPHYIFHFFWRNGKEGWLKLGGTILCITGSEAMFADLGHFNRRSIQMAFLFTIYPSLVLT 340

Query: 157 YAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSVVL 216
           YAGQTAYLI+HPNDH+DGFYKFIP+ +YWPIF++ATLAAIVASQSLISATFSVIKQSVVL
Sbjct: 341 YAGQTAYLIKHPNDHKDGFYKFIPQKIYWPIFVVATLAAIVASQSLISATFSVIKQSVVL 400

Query: 217 DYFPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVMLIT 276
           DYFPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFG+G+DIG AFGVVVSLVMLIT
Sbjct: 401 DYFPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFGDGQDIGYAFGVVVSLVMLIT 460

Query: 277 TILLTLVMIVIWRTPSLLVALYFLVFFTMEGVYVSAVFTKIPEGGWIPFAISFFLAFIMF 336
           TILLTLVMI+IWR+P LLVALYF VFFTMEGVYVSAV  KIPEGGWIPFAISF LAFIMF
Sbjct: 461 TILLTLVMIIIWRSPPLLVALYFFVFFTMEGVYVSAVLVKIPEGGWIPFAISFILAFIMF 520

Query: 337 GWFNGRQKKIEYELTHKIDLERLGTLLSDPGVQRVPGLCFFYTNIHQDGLTPILGHYIKN 396
           GWF GRQ+KIEYELTHKIDL RL  LL DPGVQRVPGLCFFYTNI QDGLTPILGHYIKN
Sbjct: 521 GWFYGRQRKIEYELTHKIDLGRLEVLLLDPGVQRVPGLCFFYTNI-QDGLTPILGHYIKN 579

Query: 397 MRSLHKVTVFTTLRYLLVPRVAPEERIIVRKLGLKGVYGCVIQYGYADTLNLEGNDFVNQ 456
           M+SLHKVT+FTTLRYLLVP+VAP ERI+V KLGL+GVYGCVIQYGYAD LNLEG+DFV+Q
Sbjct: 580 MKSLHKVTIFTTLRYLLVPKVAPHERIVVNKLGLRGVYGCVIQYGYADALNLEGDDFVSQ 639

Query: 457 VTDCLREHIEKYLDCLPSNPVDIQEEISALEEAKLSDVIHVRGKTRFYIGKNCKRFDRIM 516
           VTD LR HI+    CLPS+P +IQ+EISA E+AK++ V+H+RGKTRFYIG+NC  FDRIM
Sbjct: 640 VTDSLRMHIQNCQGCLPSDPQEIQDEISAFEQAKMAGVVHIRGKTRFYIGENCSWFDRIM 699

Query: 517 LAFYEVLHSNCRSALPALSVPLSQRIEVGMLYEA 550
           LAFYEV+H+NCRSALPAL VP ++RIEVGMLYEA
Sbjct: 700 LAFYEVMHNNCRSALPALGVPPTKRIEVGMLYEA 733

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224108187\|ref\|XP_002314752.1\| predicted protein [Populus trichocarpa] gi\|222863792\|gb\|EEF00923.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224101953\|ref\|XP_002312488.1\| predicted protein [Populus trichocarpa] gi\|222852308\|gb\|EEE89855.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356525022\|ref\|XP_003531126.1\| PREDICTED: probable potassium transporter 17-like [Glycine max]	Back alignment and taxonomy information

>gi\|38194466\|gb\|AAR13240.1\| KUP-related potassium transporter [Lotus japonicus]	Back alignment and taxonomy information

>gi\|225424516\|ref\|XP_002281786.1\| PREDICTED: probable potassium transporter 17-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297737559\|emb\|CBI26760.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357153858\|ref\|XP_003576590.1\| PREDICTED: probable potassium transporter 17-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|218202247\|gb\|EEC84674.1\| hypothetical protein OsI_31583 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|51535869\|dbj\|BAD37952.1\| putative HAK4 [Oryza sativa Japonica Group] gi\|51536120\|dbj\|BAD38244.1\| putative HAK4 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		550
TAIR\|locus:2195688		827	AT1G60160 [Arabidopsis thalian	0.783	0.521	0.396	7.9e-98
TAIR\|locus:2185515		781	KUP8 "potassium uptake 8" [Ara	0.794	0.559	0.415	2.9e-97
TAIR\|locus:2142110		785	HAK5 "high affinity K+ transpo	0.769	0.538	0.412	6e-97
TAIR\|locus:2078688		789	KUP3 "AT3G02050" [Arabidopsis	0.792	0.552	0.397	2.6e-96
TAIR\|locus:2045639		712	KT1 "potassium transporter 1"	0.92	0.710	0.374	4.7e-96
TAIR\|locus:2061838		794	KT2 "potassium transporter 2"	0.86	0.595	0.390	6.1e-95
TAIR\|locus:2016139		782	KUP6 "K+ uptake permease 6" [A	0.832	0.585	0.379	1.6e-94
TAIR\|locus:2029589		796	KUP10 "K+ uptake permease 10"	0.769	0.531	0.419	4.8e-93
TAIR\|locus:2044717		793	KUP11 "K+ uptake permease 11"	0.769	0.533	0.409	5.5e-92
TAIR\|locus:2128399		775	TRH1 "TINY ROOT HAIR 1" [Arabi	0.803	0.570	0.360	3.1e-85

TAIR\|locus:2195688 AT1G60160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 889 (318.0 bits), Expect = 7.9e-98, Sum P(3) = 7.9e-98
 Identities = 175/441 (39%), Positives = 270/441 (61%)

Query:    34 YDISALVEALSAIILIVLFLMQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIF 93
             +  +ALV + S +IL+ LF +Q+FGT +V FLF+P++  W FS   +GIY+++ +   + 
Sbjct:   255 FGTNALVMS-SIVILVALFSIQRFGTGKVGFLFAPVLALWFFSLGAIGIYNLLKYDFTVI 313

Query:    94 KALSPHYTFHFFWRKGKEGWLLLGGTVLCITGSEALFADLGHFNRSSIQMAFLFTIYPSL 153
             +AL+P Y   FF +  K+ W  LGG VLCITG+EA+FADLGHF+  SIQMAF   ++P L
Sbjct:   314 RALNPFYIVLFFNKNSKQAWSALGGCVLCITGAEAMFADLGHFSVRSIQMAFTCVVFPCL 373

Query:   154 VLTYAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQS 213
             +L Y GQ AYL +HP      FY  +PKS++WP+F+IATLAA++ASQ++ISATFS +KQ+
Sbjct:   374 LLAYMGQAAYLTKHPEASARIFYDSVPKSLFWPVFVIATLAAMIASQAMISATFSCVKQA 433

Query:   214 VVLDYFPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGXXXXXXX 273
             + L  FPR+K++HTS  + G++Y P +N+ LMI+C+ V+ IF     I NA+G       
Sbjct:   434 MALGCFPRLKIIHTSKKRIGQIYIPVINWFLMIMCILVVSIFRSTTHIANAYGIAEVGVM 493

Query:   274 XXXXXXXXXXXXXXWRTPSLLVALYF-LVFFTMEGVYVSAVFTKIPEGGWIPFAISFFLA 332
                           W+T ++ +AL F L+F ++E +Y+ AV TKI EGGW+P   + F  
Sbjct:   494 MVSTVLVTLVMLLIWQT-NIFLALCFPLIFGSVETIYLLAVLTKILEGGWVPLVFATFFL 552

Query:   333 FIMFGWFNGRQKKIEYELTHKIDLERLGTLLSDPGVQRVPGLCFFYTNIHQDGLTPILGH 392
              +M+ W  G   K + E+  +I ++ +  L S  G  R+PG+   Y  + Q G+  I G 
Sbjct:   553 TVMYIWNYGSVLKYQSEVRERISMDFMRELGSTLGTIRIPGIGLLYNELVQ-GIPSIFGQ 611

Query:   393 YIKNMRSLHKVTVFTTLRYLLVPRVAPEERIIVRKLGLKG--VYGCVIQYGYADTLNLEG 450
             ++  + ++H   +F  ++Y+ VP V  EER + R++  K   ++ C+ +YGY D    + 
Sbjct:   612 FLLTLPAIHSTIIFVCIKYVPVPVVPQEERFLFRRVCPKDYHMFRCIARYGYKDVRKEDS 671

Query:   451 NDFVNQVTDCLREHIEKYLDC 471
               F  Q+   L E +EK+L C
Sbjct:   672 RVF-EQL---LIESLEKFLRC 688

GO:0005634 "nucleus" evidence=ISM

GO:0006813 "potassium ion transport" evidence=ISS

GO:0015079 "potassium ion transmembrane transporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR\|locus:2185515 KUP8 "potassium uptake 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2142110 HAK5 "high affinity K+ transporter 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2078688 KUP3 "AT3G02050" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2045639 KT1 "potassium transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2061838 KT2 "potassium transporter 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2016139 KUP6 "K+ uptake permease 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2029589 KUP10 "K+ uptake permease 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2044717 KUP11 "K+ uptake permease 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2128399 TRH1 "TINY ROOT HAIR 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q67UC7	HAK17_ORYSJ	No assigned EC number	0.7011	0.92	0.7157	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.6262.1	hypothetical protein (679 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.02100021	hypothetical protein (74 aa)	•	0.406

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		550
pfam02705		534	pfam02705, K_trans, K+ potassium transporter	1e-179
TIGR00794		688	TIGR00794, kup, potassium uptake protein	1e-152
PLN00150		779	PLN00150, PLN00150, potassium ion transporter fami	1e-150
PLN00148		785	PLN00148, PLN00148, potassium transporter; Provisi	1e-139
PLN00151		852	PLN00151, PLN00151, potassium transporter; Provisi	1e-130
PLN00149		779	PLN00149, PLN00149, potassium transporter; Provisi	1e-126
COG3158		627	COG3158, Kup, K+ transporter [Inorganic ion transp	1e-109
PRK10745		622	PRK10745, trkD, potassium transport protein Kup; P	1e-77
PLN00148		785	PLN00148, PLN00148, potassium transporter; Provisi	0.002
PLN00151		852	PLN00151, PLN00151, potassium transporter; Provisi	0.004

>gnl\|CDD\|217193 pfam02705, K_trans, K+ potassium transporter	Back alignment and domain information

 Score =  515 bits (1328), Expect = e-179
 Identities = 171/410 (41%), Positives = 257/410 (62%), Gaps = 3/410 (0%)

Query: 35  DISALVEALSAIILIVLFLMQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFK 94
            +   V  ++ +IL+ LFL+Q+FGT ++  LF PIM  W  +  ++G+Y+II + P + K
Sbjct: 128 SLEPYVVPITLVILVALFLIQRFGTGKIGKLFGPIMLIWFLTLGVLGLYNIIQN-PSVLK 186

Query: 95  ALSPHYTFHFFWRKGKEGWLLLGGTVLCITGSEALFADLGHFNRSSIQMAFLFTIYPSLV 154
           AL+P+Y   F  R GK G+ +LG   L +TG+EAL+AD+GHF R  I++A+ F ++P+L+
Sbjct: 187 ALNPYYAIRFLLRNGKAGFFVLGAVFLAVTGAEALYADMGHFGRRPIRLAWFFLVFPALL 246

Query: 155 LTYAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIATLAAIVASQSLISATFSVIKQSV 214
           L Y GQ A L++HP    + F+  +P+ +YWP+ ++ATLA I+ASQ+LIS  FS+ +Q++
Sbjct: 247 LNYLGQGALLLKHPEAISNPFFLLVPEWLYWPMVVLATLATIIASQALISGAFSLTRQAI 306

Query: 215 VLDYFPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLVML 274
            L Y PR+K+VHTS  +EG++Y P VN++LMI  +AV+L F    ++  A+G+ V+  ML
Sbjct: 307 QLGYLPRLKIVHTSEKEEGQIYIPVVNWLLMIGVIAVVLGFRSSSNLAAAYGLAVTGTML 366

Query: 275 ITTILLTLVMIVIWRTPSLLVALYFLVFFTMEGVYVSAVFTKIPEGGWIPFAISFFLAFI 334
           ITTILL LV   +WR P +L  L+ L F  ++  + SA   KIP GGW P  I+  L  I
Sbjct: 367 ITTILLFLVARRVWRWPLILALLFLLFFLVIDLAFFSANLLKIPHGGWFPLLIAAILFTI 426

Query: 335 MFGWFNGRQKKIEYELTHKIDLERLGTLLSDPGVQRVPGLCFFYTNIHQDGLTPILGHYI 394
           M  W  GR+         ++ L+    LL    + RVPG   F T+   DG+ P L H +
Sbjct: 427 MLTWRRGRKLLYRRLKEDEVPLDDFLKLLERKDIPRVPGTAVFLTS-LPDGIPPALLHNL 485

Query: 395 KNMRSLHKVTVFTTLRYLLVPRVAPEERIIVRKLGLKGVYGCVIQYGYAD 444
           K+ + LH+  VF T+  L VPRV PEER  V +LG  G Y  +++YG+ +
Sbjct: 486 KHNKVLHERVVFLTIVTLDVPRVPPEERYEVERLG-PGFYRVILRYGFME 534

This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members. Length = 534

>gnl\|CDD\|129876 TIGR00794, kup, potassium uptake protein	Back alignment and domain information

>gnl\|CDD\|215078 PLN00150, PLN00150, potassium ion transporter family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|215077 PLN00148, PLN00148, potassium transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|215079 PLN00151, PLN00151, potassium transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|177753 PLN00149, PLN00149, potassium transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|225700 COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|182693 PRK10745, trkD, potassium transport protein Kup; Provisional	Back alignment and domain information

>gnl\|CDD\|215077 PLN00148, PLN00148, potassium transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|215079 PLN00151, PLN00151, potassium transporter; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		550
TIGR00794		688	kup potassium uptake protein. Proteins of the KUP	100.0
PLN00150		779	potassium ion transporter family protein; Provisio	100.0
PLN00148		785	potassium transporter; Provisional	100.0
PRK10745		622	trkD potassium transport protein Kup; Provisional	100.0
PLN00151		852	potassium transporter; Provisional	100.0
PLN00149		779	potassium transporter; Provisional	100.0
COG3158		627	Kup K+ transporter [Inorganic ion transport and me	100.0
PF02705		534	K_trans: K+ potassium transporter; InterPro: IPR00	100.0
TIGR00911		501	2A0308 L-type amino acid transporter.	93.76
COG0531		466	PotE Amino acid transporters [Amino acid transport	82.73
TIGR00909		429	2A0306 amino acid transporter.	81.58
PF13520		426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	80.91

>TIGR00794 kup potassium uptake protein	Back alignment and domain information

Probab=100.00  E-value=4.1e-170  Score=1397.91  Aligned_cols=514  Identities=38%  Similarity=0.707  Sum_probs=488.8

Q ss_pred             ccc-CceeehhHHHHHHHHHhhhccccccccccchhHHHHHHHHhhHhhHHHhhccCcceeEecChHHHHHHhhhcCcce
Q 008888           34 YDI-SALVEALSAIILIVLFLMQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEG  112 (550)
Q Consensus        34 ~~~-~~~Vvpis~~ILv~LF~iQ~~GT~kvg~~FgPImlvWF~~l~~~Gi~~I~~~~P~Vl~AlnP~yai~f~~~~~~~g  112 (550)
                      |++ +++|+||||+||++||++||+||+|||++|||||++||++||++|+|||.+|||+||+|+||+||++|+.+||..|
T Consensus       161 p~~~~~~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~  240 (688)
T TIGR00794       161 PSLSDTWVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG  240 (688)
T ss_pred             CCCCCCeehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce
Confidence            456 8999999999999999999999999999999999999999999999999997899999999999999999999999


Q ss_pred             eeeecceeeeecchhhhhhccCCCCccchhhhhHHHHHHHHHHhcccchhhhhcCCCcccccccccccccchHHHHHHHH
Q 008888          113 WLLLGGTVLCITGSEALFADLGHFNRSSIQMAFLFTIYPSLVLTYAGQTAYLIRHPNDHEDGFYKFIPKSVYWPIFIIAT  192 (550)
Q Consensus       113 ~~~LG~V~L~vTGaEALyADmGHFg~~~Ir~aW~~~V~PaLiLnY~GQgA~ll~~p~~~~npFf~~~P~~~~~P~vilAt  192 (550)
                      |.+||+|+||+|||||||||||||||+|||+||+++|||||+|||+||||++++||++.+||||.++|+|++||+++|||
T Consensus       241 ~~~LG~V~L~iTGaEALyADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~~vlAt  320 (688)
T TIGR00794       241 WVSLGGVVLSITGVEAMFADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPEAIKNPFFLSIPDWALWPLFIIAT  320 (688)
T ss_pred             eeeccchhheeccHhhhhcccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcchhcCcHHHhCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhchhhHHHHHHhcCCCccceEEecCCCCCCcccchhhHHHHHHHhheeEEEeCCcchhhhhhhhhhHHH
Q 008888          193 LAAIVASQSLISATFSVIKQSVVLDYFPRVKVVHTSSNKEGEVYSPEVNYILMILCVAVILIFGEGKDIGNAFGVVVSLV  272 (550)
Q Consensus       193 lAtIIASQA~ISG~FSl~~QAi~Lg~~Pr~~I~hTS~~~~GQIYIP~vNwlL~i~~i~vvl~F~~S~~La~AYGiAVt~t  272 (550)
                      +||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||||+|||+|||+|||+|
T Consensus       321 lAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGiaVt~t  400 (688)
T TIGR00794       321 LAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGIAVTGT  400 (688)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHhhhhhhhhhhhHHHHHHHHHhC
Q 008888          273 MLITTILLTLVMIVIWRTPSLLVALYFLVFFTMEGVYVSAVFTKIPEGGWIPFAISFFLAFIMFGWFNGRQKKIEYELTH  352 (550)
Q Consensus       273 M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~ff~anl~K~~~GGW~pl~ia~~l~~iM~tW~~G~~~~~~~~~~~  352 (550)
                      |+|||+|++++++.+||||++.+++++++|+.+|+.||+||+.|++||||+||++|++++++|+||++||++++++++++
T Consensus       401 M~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~  480 (688)
T TIGR00794       401 FLVTTCLMTVVMTIVWKWNIYFVALFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSVMTTWRYGRFRKLRRDHEH  480 (688)
T ss_pred             hHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHhhhCCCCC-cccCCeEEEEeCcCCCCcccchhhccccCcccceEEEEEEEeeeecccCCCCceEEEEEecC-
Q 008888          353 KIDLERLGTLLSDPGV-QRVPGLCFFYTNIHQDGLTPILGHYIKNMRSLHKVTVFTTLRYLLVPRVAPEERIIVRKLGL-  430 (550)
Q Consensus       353 ~~~l~~~~~~~~~~~~-~rvpG~avf~t~~~~~~vP~~l~h~l~~~~~lhe~vvfl~v~~~~vP~V~~~eR~~v~~~~~-  430 (550)
                      ++|+++|++++.+..+ .|+||+|+|+|++ ++++|+++.||++|||++||++||+||+++|+|+||++||++++++++ 
T Consensus       481 ~~~~~~~~~~l~~~~~l~rvpG~avf~t~~-~~~vP~~~~h~l~~~~~lhe~~vfltv~~~~~P~Vp~~eR~~v~~l~~~  559 (688)
T TIGR00794       481 RVSISALIASLQPKPGLVRVPGIGIYYSNL-VNGIPAVFGHLVTKFPSIHEVFIFLSLRTLDAPTVHNEERVQISQVGPT  559 (688)
T ss_pred             CCCHHHHHHHHhhcCCCcccCCeEEEeeCC-ccCCCHHHHHHHHhCCccceEEEEEEEEECCCCcCCcceEEEEEEEcCC
Confidence            9999999998765554 7999999999999 999999999999999999999999999999999999999999999985 


Q ss_pred             CCEEEEEEEEeeeccccCCccchHHHHHHHHHHHHHhhcc-------CCCCCCcch---HHHHHHHHHhccCceEEEEEe
Q 008888          431 KGVYGCVIQYGYADTLNLEGNDFVNQVTDCLREHIEKYLD-------CLPSNPVDI---QEEISALEEAKLSDVIHVRGK  500 (550)
Q Consensus       431 ~g~~rv~~ryGf~e~~~v~~~~f~~~il~~l~~~i~~~~~-------~~~s~~~~~---~~e~~~L~~a~~~~~~y~lg~  500 (550)
                      +|+|||++||||||+||+|+ +++++++++++++++++..       .+++ ...+   ++|.++++++.++|++||+||
T Consensus       560 ~g~~rv~~~yGf~e~~~~~~-~l~~~ii~~L~~fi~~~~~~~~~~~~~~~~-~~~~~~~eee~~~~~~~~~~gv~yflg~  637 (688)
T TIGR00794       560 EGMYRCVIRYGFMDTPNEPK-ELAAHIVNSIVEFVEHECGFNLNNLEELSD-KRCRMPIEEIFENAMETKEHGYSYFMGE  637 (688)
T ss_pred             CCEEEEEEEecCCcCCCcHH-HHHHHHHHHHHHHHHHHhhhcccccccccc-cccccchHHHHHHHHHHhhcCCEEEeec
Confidence            48999999999999999764 8999999999998764220       0100 0022   456667888899999999999


Q ss_pred             eEEEecCCCchHHHHHHH-HHHHHHHhccCCCCcccCCCCCeEEEEEEEEC
Q 008888          501 TRFYIGKNCKRFDRIMLA-FYEVLHSNCRSALPALSVPLSQRIEVGMLYEA  550 (550)
Q Consensus       501 ~~l~~~~~~~~~~~~~~~-lf~~L~rn~~~~~~~f~lP~~rvvevG~~~~i  550 (550)
                      +++++++++++++||+++ +|.||+|||++++++|++|+||++|+|+++||
T Consensus       638 ~~~~~~~~~~~~~~~~I~~lf~~l~rn~~~~~~~~~iP~~rvvevG~~~~i  688 (688)
T TIGR00794       638 ESLILKKRSPILRKIRVNHVFLFIRRNARRAPKVLEIPPDRLLEVGTVVEI  688 (688)
T ss_pred             eEEEECCCccHHHHHHHHHHHHHHHHhccChhhheeCChhhEEEEeeEEEC
Confidence            999999999999999955 99999999999999999999999999999996

Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.

>PLN00150 potassium ion transporter family protein; Provisional	Back alignment and domain information

>PLN00148 potassium transporter; Provisional	Back alignment and domain information

>PRK10745 trkD potassium transport protein Kup; Provisional	Back alignment and domain information

>PLN00151 potassium transporter; Provisional	Back alignment and domain information

>PLN00149 potassium transporter; Provisional	Back alignment and domain information

>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members	Back alignment and domain information

>TIGR00911 2A0308 L-type amino acid transporter	Back alignment and domain information

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00909 2A0306 amino acid transporter	Back alignment and domain information

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		550
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 78/642 (12%), Positives = 179/642 (27%), Gaps = 189/642 (29%)

Query: 2   FFRELDYIYAVNIF-SVISSPEVDSFWFSTLLVYDISALVEALSAIILIVLFLMQKFGTS 60
           F    D     ++  S++S  E+D           I    +A+S  + +   L+ K    
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEID----------HIIMSKDAVSGTLRLFWTLLSK-QEE 77

Query: 61  RV------------SFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRK 108
            V             FL SPI       + +  +Y             +  +  +   R 
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRL 134

Query: 109 GK-------------EGWLLLGG------TVL-----------CITGSEALFADLGHFNR 138
                             +L+ G      T +           C    +  + +L + N 
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 139 SSIQMAFLFTIYPSLVLTYAGQTAYLIRHP---NDHEDGFYKFIPKSVYWPIFIIATLAA 195
               +  L  +   +   +  ++ +        +  +    + +    Y           
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----------- 243

Query: 196 IVASQSLISATFSV---IKQSVVLDYF-PRVKVVHTSSNKE-GEVYSPEVNYILMILCVA 250
                 L+     V   ++ +   + F    K++ T+  K+  +  S      + +   +
Sbjct: 244 ---ENCLL-----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 251 VILIFGEGKDI-GNAFGVVVSLVML----ITTILLTLVMIVI-----------WRTPS-- 292
           + L   E K +             L    +TT    L +I             W+  +  
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 293 -----LLVALYFLVFFTMEGVYVS-AVFTKIPEGGWIPFAISFFLAFIMFGWFNGRQKKI 346
                +  +L  L       ++   +VF   P    IP  +   L+ I   WF+  +  +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVF---PPSAHIPTIL---LSLI---WFDVIKSDV 404

Query: 347 EYELTHKIDLERLGTLLSDPGVQRVPGLCFFYTNIHQDGLTPILGHYIKNMRSLHKVTVF 406
              +     L +   +   P             +I+ +         ++N  +LH+    
Sbjct: 405 MVVVNK---LHKYSLVEKQP----KESTISIP-SIYLELKVK-----LENEYALHR---- 447

Query: 407 TTLRYLLVPRVAPEERIIVRKLGLKGVYGCVIQYGYADTLNLEGNDFVNQVTDC------ 460
                           I+                 Y      + +D +    D       
Sbjct: 448 ---------------SIVDH---------------YNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 461 ---LR--EHIEKYLDCLPSNPVD---IQEEI-----SALEEAKLSDVIHVRGKTRFYIGK 507
              L+  EH E+         +D   ++++I     +      + + +      + YI  
Sbjct: 478 GHHLKNIEHPERM-TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 508 NCKRFDRIMLAFYEVLHSNCRSALPALSVPLSQRIEVGMLYE 549
           N  +++R++ A  + L       L  +    +  + + ++ E
Sbjct: 537 NDPKYERLVNAILDFLP-KIEENL--ICSKYTDLLRIALMAE 575

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		550
3gia_A		444	Uncharacterized protein MJ0609; membrane protein,	95.96
4djk_A		511	Probable glutamate/gamma-aminobutyrate antiporter;	95.58
3l1l_A		445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	93.5

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C	Back alignment and structure

Probab=95.96  E-value=0.082  Score=54.44  Aligned_cols=78  Identities=15%  Similarity=0.106  Sum_probs=44.1

Q ss_pred             ehhHHHHHHHHHhhhcccccccccc---chhHHHHHHHHhhHhhHHHhhccCcceeEe-cChHHHHHHhhhcCcce-eee
Q 008888           41 EALSAIILIVLFLMQKFGTSRVSFL---FSPIMGAWTFSTPLVGIYSIIHHYPGIFKA-LSPHYTFHFFWRKGKEG-WLL  115 (550)
Q Consensus        41 vpis~~ILv~LF~iQ~~GT~kvg~~---FgPImlvWF~~l~~~Gi~~I~~~~P~Vl~A-lnP~yai~f~~~~~~~g-~~~  115 (550)
                      ..+++++++.+..+..+|+...+++   +..+.++=++.+.+.|+.+.   +|+-+.. ++|.         +..+ +..
T Consensus       126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~---------g~~~~~~~  193 (444)
T 3gia_A          126 AITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPS---------AVSGMIFA  193 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHH---------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCc---------chHHHHHH
Confidence            3567788888888999998776665   44444444444445555543   3443221 2222         1111 222


Q ss_pred             ecceeeeecchhhhh
Q 008888          116 LGGTVLCITGSEALF  130 (550)
Q Consensus       116 LG~V~L~vTGaEALy  130 (550)
                      +...+.+.+|-|+.-
T Consensus       194 ~~~~~~a~~G~e~~~  208 (444)
T 3gia_A          194 SAIFFLSYMGFGVIT  208 (444)
T ss_dssp             HHHGGGGGTHHHHHH
T ss_pred             HHHHHHHHHhHHHHH
Confidence            344567889999763

PyMOL of 3gia

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A	Back alignment and structure

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00