Citrus Sinensis ID: 008894

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
Protein Sequence
MGDRENSDELLPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKRCNECH
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEcccccccEEEEEcccccccccccEEEEEEEcccccccccccccccccccEEEcHHHHHHHHHHccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEEccccccEEEEEEccccccccccEEEEEEEcccccccccccEEcccccEEEEcHHHHHHHHHccccccEEEEcccccccccccccccccccccHHHHHcccccccccccccccccHHHHccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccHHHccccccccccccccccccccccccccccccccccccccccEcccccccHcccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccccccccccccccHccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHcHcccccccccccccEEcccccccccccccccccccccccccccEccccccccccccccHccccc
Coil and Loop (DISEMBL)
mgdrensdellpdgcrVEVRVrkngkkdkiiiekdtpdglppgwtkeikvtktgrkvrrdpyyidpasgyifRSMKDAVRYVEtgeigrlaykpkddgnqdeedleddkdnsptatkkqklevtgtetditsqstklsevakdedALDSAVEAGTElrgsnlseakdsdkmdyrkdsdknvlstpvvvvlpqgqssdvgEMMDETMNTtlgksmsrkkkvfdlpRRASKRLaglaldptpelktsnrvrrkqsdkieasstveafcsgsqvhlasqqpdqleakpeancafdtskstevssatseakhpsgdlnassgkietgcksdqpqgcavdltmkhpdnietdieadknpsplidlpfgdllsdpcIAFAIKTLtgetfetssdkevslesnsgksegfaflegqagkkrenegeekqenLATSEEQAANVESKlktdeklenpldlpfadiwrdpCIEFAIKTLTgaipvgndwdvQDYFQQQInssqtqpnnnfcqtEFLCqqfdslekpvsreqartgnlsiqnpggsgfhqqsekrcnech
Flexible Loop (DISEMBL)
mgdrensdellpdgcrvevrvrkngkkdkiiiekdtpdglppgwtkeikvtktgrkvrrdpyyidpasgyifrsMKDAVRYVETGeigrlaykpkddgnqdeedleddkdnsptatkkqklevtgtetditsqstklsevakdedALDSAVeagtelrgsnlseakdsdkmdyrkdsdknvlstpvvvvlpqgqssdvgeMMDETMnttlgksmsrkkkvfdlPRRASkrlaglaldptpelktsnrvrrkqsdkiEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSsatseakhpsgdlnassgkiETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTgetfetssdkevslesnsgksegfaflegqagkkrenegeekqenlatseeqAANVEsklktdeklenplDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARtgnlsiqnpggsgfhqqsekrcnech
Low Complexity Region (SEG)
MGDRENSDELLPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKRCNECH
Disordered region (IsUnstruct)
*****************************IIIE*******PPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAY*********************************************************************************************VVVV***********************************************************************************************************************************************************************LIDLPFGDLLSDPCIAFAIKTLTGE*******************************************************************LDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQI********NNFCQTEFLCQQF***************************************
Disordered Region (DISOPRED)
******S***LPDGCRVEVR**********IIEKDTPDGLPPGWTKEIKVTK**RKVRRDPYYIDPASGYIFRSMKDAVRYV*********************************************************************************************************************************************************************************************************************************************************************************************DPCIAFA**************************************************************************************CIEFAIKTLTGAIPVGNDWD**********************TEFL*******************************************
Disordered Region (DISEMBL)
**********LPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD******************************************************VEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKT*****************VEAFCSGSQVHLASQQPDQLEAKPEANCAF***********************ASSGKI*********QGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETF***************KSEGFAFLEGQ******************************KTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLE********RTGNLSIQNP*****************
Disordered Region (DISPRO)
*******DELLPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD***************************************************************************************************************************V***********AGLAL***********************************************************************************************************************PLIDLPFGDLLSDPCIAFAIKTLTGETFETSS*************************************************************LDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEK**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDRENSDELLPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENExxxxxxxxxxxxxxxxxxxxxxxxxxxxENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKRCNECH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	549	2.2.26 [Sep-21-2011]
Q9LTJ8	746	Methyl-CpG-binding domain	yes	no	0.424	0.312	0.328	7e-27

>sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13 PE=2 SV=1

 Score =  122 bits (306), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 148/280 (52%), Gaps = 47/280 (16%)

Query: 16  RVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRS 74
           +VE+RVRKNG+KDK+I+EK    GLP GW K++++T ++GRK RRDP++IDP S YIF+S
Sbjct: 15  KVEIRVRKNGRKDKVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQS 74

Query: 75  MKDAVRYVETGEIG-----------------------RLAY---KPKDDGNQDEEDLED- 107
            KDA RYVETG IG                       RL Y   +  DD  + E+ ++D 
Sbjct: 75  FKDASRYVETGNIGHYARKLKESDIEDDDSGNGKTVLRLEYVDKRSADDVLEKEKTIDDV 134

Query: 108 ----DKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDE---DALDSAVEAGTELRGS 160
                ++ S +    +  ++T   + +TSQ   L ++ K E   D ++  + A    R  
Sbjct: 135 RRSKRRNLSSSDEHSKNCKMTSDLSIVTSQV--LEDLGKKEEVKDPIEKQLIAKRVTRSQ 192

Query: 161 NLSEAKDSDKMDYRKD-------SDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKS 213
             +   +   +D +++       S+K+ +++ V    P+ ++    E   ++    + +S
Sbjct: 193 TKASTTEEVVVDLKRNLSSSNAKSEKDSVNSSVRSQKPKKEAVMKEEEEQDSSEKRITRS 252

Query: 214 MSRKKK---VFDLPRRASKRLAGLALDPTPELKTSNRVRR 250
              +KK      + RR SKRLAG+ L+PTPELKT  +V+R
Sbjct: 253 KVEEKKNELSNSVARRTSKRLAGIELEPTPELKTRAKVQR 292

Probable transcriptional regulator.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	549
255539489	644	conserved hypothetical protein [Ricinus	0.899	0.767	0.431	2e-87
224122408	762	methyl binding domain protein [Populus t	0.755	0.544	0.402	2e-58
359490294	637	PREDICTED: uncharacterized protein LOC10	0.872	0.751	0.343	1e-56
297741054	560	unnamed protein product [Vitis vinifera]	0.542	0.532	0.396	2e-49
449446179	522	PREDICTED: uncharacterized protein LOC10	0.881	0.927	0.313	4e-47
449520114	487	PREDICTED: uncharacterized protein LOC10	0.750	0.845	0.302	3e-36
356561673	546	PREDICTED: uncharacterized protein LOC10	0.848	0.853	0.290	1e-34
224134745	243	methyl binding domain protein [Populus t	0.269	0.609	0.445	2e-31
297742566	1076	unnamed protein product [Vitis vinifera]	0.570	0.290	0.324	2e-29
15242941	746	methyl-CPG-binding domain protein 13 [Ar	0.424	0.312	0.328	5e-25

>gi|255539489|ref|XP_002510809.1| conserved hypothetical protein [Ricinus communis] gi|223549924|gb|EEF51411.1| conserved hypothetical protein [Ricinus communis]

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 241/558 (43%), Positives = 318/558 (56%), Gaps = 64/558 (11%)

Query: 28  DKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEI 87
           DK ++EK  P+GLP GWTKEIKVTK G K+RRDPYY DP SGY+FRSMKDA+RY+ETGE+
Sbjct: 110 DKFVVEKSEPEGLPLGWTKEIKVTKRGHKIRRDPYYTDPVSGYVFRSMKDALRYLETGEV 169

Query: 88  GRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETD-ITSQSTKLSEVAKDEDA 146
           GRLA+KPKD GN D  +LEDDK  +    KKQKL    T T  I++ S+KL EVAKDE A
Sbjct: 170 GRLAFKPKDTGN-DNVELEDDKTCTSATAKKQKLAANETPTSLISAHSSKLIEVAKDEHA 228

Query: 147 LDSAVEA---------------GTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLP 191
           + SA                  G   + S   E K S +   + D     L+T  V VL 
Sbjct: 229 ISSASTGESLPISEHTSGHCVLGLPSQNSEAPEGKSSSQTVRKSDLTNGALAT-AVDVLS 287

Query: 192 QGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRR- 250
             Q S+ GEM D  + T  G   S+KKK   LPRRASKRLAGL LDPTPELKT NRVRR 
Sbjct: 288 IEQPSESGEMKD--VITKAGLGKSKKKKDLSLPRRASKRLAGLPLDPTPELKTINRVRRG 345

Query: 251 --KQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKH 308
              QS+ I A +   +  +G                 EA  A DTSK+T+    +++ KH
Sbjct: 346 AVGQSNDIAAITDESSSPAGR----------------EAKHASDTSKNTK-RLESNKGKH 388

Query: 309 PSGDLNASSGKIETGCKSDQPQ-----GCAVDLTMK--HPDNIETDIEADKNPSPLIDLP 361
           P G ++A S +++T  K ++         +  LT K  H  N+ETD  AD+     +DLP
Sbjct: 389 PIGHMHAPS-ELKTENKGNEKHEHPTVSPSRSLTFKEEHAGNMETDNNADEKLGVPLDLP 447

Query: 362 FGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKK--RENEGE 419
            G+L  DPCIAFAIKTLTG +FE S   +VS  SN+ +  G + LE  A K+  +  E E
Sbjct: 448 LGELWQDPCIAFAIKTLTGISFENSEGVQVSSGSNNSECGGLSALEDNARKEDLQNREPE 507

Query: 420 EKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDW 479
           ++ ++L+        + +K    EK  +PL++ FAD W DPCI+FAIKTLTGAIP+  D 
Sbjct: 508 KQVQHLSNIISHDVEISNK----EKPGSPLNVDFADPWADPCIQFAIKTLTGAIPLACDR 563

Query: 480 DVQDYFQQQINSSQTQPNNNFC--------QTEFLCQQFDSLEKPVSREQAR--TGNLSI 529
            +QD  QQ+ +SSQ+Q ++           QTE  CQQF    +P   + A      +S+
Sbjct: 564 VIQDCLQQKASSSQSQESSGLILQNVGEPDQTEVFCQQFSISPQPSYNQGALPPKKKVSL 623

Query: 530 QNPGGSGFHQQSEKRCNE 547
             P G+ + Q +++R  E
Sbjct: 624 GYPSGTIYQQHNDERSKE 641

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122408|ref|XP_002318826.1| methyl binding domain protein [Populus trichocarpa] gi|222859499|gb|EEE97046.1| methyl binding domain protein [Populus trichocarpa]

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 193/479 (40%), Positives = 247/479 (51%), Gaps = 64/479 (13%)

Query: 110 DNSPTATKKQKLEVTGTETDITS-QSTKLSEVAKDEDALDSAVEA-------------GT 155
           D   +  KKQKL V  T + I S QS KL  + KDE  L+SA                GT
Sbjct: 304 DQFVSVIKKQKLAVNRTPSSIISDQSLKLGGIVKDEQILNSASAGECTILSKHTSGGVGT 363

Query: 156 ELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMS 215
           E   S   E K S++ + + DS K     P+  VL    S +VGE   E+  T + KS  
Sbjct: 364 ESSSSEFLEDKGSNQTEEKSDSVK--AEDPLQAVLQDKPSVEVGETKKESKKTGVRKS-- 419

Query: 216 RKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQ---SDKIEASSTVEAFCSGSQVH 272
           RKK   +LPRRASKRLAG+ L PTPELK + R RR     S++I AS++ +A C      
Sbjct: 420 RKKTDLNLPRRASKRLAGIPLAPTPELKAATRARRAALEPSNEIVASTSEQASCGDPDTE 479

Query: 273 LASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGC 332
           L ++             AFDTSKSTE+   ++E+KH   D+   +GK  +G + D+    
Sbjct: 480 LNTKH------------AFDTSKSTEIPVDSNESKHAIVDVE-HAGKAGSGKQGDKKHQY 526

Query: 333 AVD------LTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETS 386
            V        T +H   IET    D+      DLP  +L  DPCIAFAIKTLTG + + S
Sbjct: 527 DVASPPGNLATGEHAGKIETYSTGDEKQGLPFDLPLEELWQDPCIAFAIKTLTGTSVDDS 586

Query: 387 SDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEKLE 446
              +VS  S++ +  G A L+  AGK  E+ G     NL+  EE A  V +  K+DEK  
Sbjct: 587 DSIKVSPGSSNNEFVGMATLDNHAGK--EDIGNNG--NLSILEEHARAVGTSNKSDEKPV 642

Query: 447 NPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWD-VQDYFQQQINSSQTQ-------PN- 497
           +PL LPFAD W DPCIEFAIKTLTGA+P+  D+D VQDY   Q+ SSQ Q       PN 
Sbjct: 643 SPLVLPFADAWSDPCIEFAIKTLTGALPL--DFDMVQDYLPPQVRSSQPQESRGFTLPNV 700

Query: 498 NNFCQTEFLCQQFDSLEKPVSREQARTG---------NLSIQNPGGSGFHQQSEKRCNE 547
             F QTEFLCQQF + EKP   + A  G         NL      G      SE+R N+
Sbjct: 701 GEFRQTEFLCQQFGTSEKPSFNQAALVGPALPHTKHVNLGYAAAAGPSRRLHSEERSNK 759

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490294|ref|XP_002263477.2| PREDICTED: uncharacterized protein LOC100263513 [Vitis vinifera]

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 187/545 (34%), Positives = 258/545 (47%), Gaps = 66/545 (12%)

Query: 29  KIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIG 88
           K++ E+ T +GLPPGW KEIK+ K    VRRD YY DP +GYIFRSMKD +RY++TG+ G
Sbjct: 93  KVVFERVTAEGLPPGWIKEIKIQKKCGTVRRDAYYTDPVNGYIFRSMKDTLRYLKTGDPG 152

Query: 89  RLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDIT-SQSTKLSEVAKDEDAL 147
           RLA+KPK   + D  +LEDDK  SP   +KQ+L   G    IT  QS KL ++A DE   
Sbjct: 153 RLAFKPKPRDSGD-INLEDDKTYSPVVPRKQELAGGGARRQITRGQSLKLGKIASDEGIP 211

Query: 148 DSAVEAGTELRGS-NLSEAKDSDKMDYRKDSDKNVL-STPVVVVLPQGQSSDVGEMMDET 205
            SA         S  LSEAK S+ +  + D  KNVL S P+V  L + Q  +    +   
Sbjct: 212 KSACSGAKVTESSLYLSEAKGSEPIGEKSDDAKNVLDSAPLVEPLAEKQPLENRAKVCGK 271

Query: 206 MNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAF 265
             T  G    R KK  DLPRRASKRLAGL  D TPELKT+NR  R  +     S  +EA 
Sbjct: 272 RKTQPGLCNYRNKKSHDLPRRASKRLAGLEADVTPELKTTNRGSRVAAGH---SGEIEAG 328

Query: 266 CSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDL---NASSGKIET 322
            +              EA+P+  C+F  S+  EV   ++  K P  DL      + K+E 
Sbjct: 329 IA--------------EAEPKTKCSFQPSQKLEVLLESNSGKTPVEDLVPPEEQAEKVEA 374

Query: 323 GCKSDQPQGCAVDLTM-------KHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAI 375
             K  +  GC++ L +       +H    E + +   NP P  +LPFGD  +DPCI FAI
Sbjct: 375 ENKDKEKHGCSLSLPLGDGPIPIEHAGVAEDENKGAGNPEPPHELPFGDSWTDPCIEFAI 434

Query: 376 KTLTGETF--ETSSDKEVS---LESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEE 430
           KTLT +    E    +++S    ++N+G + G   L+              Q +    + 
Sbjct: 435 KTLTSDHLFIEDYFQQQLSSPHAQTNNGSNFGLGNLQ--------------QTDFPFQQY 480

Query: 431 QAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDY-FQQQI 489
             A   +      +L+ P+   F    +D  + F     TG    G D          QI
Sbjct: 481 DVAENPA-----PELQAPVQPTF---LKDGNVNFPSSGETGGYQPGEDKSKASLKAPAQI 532

Query: 490 NSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQA-------RTGNLSIQNPGGSGFHQQSE 542
           ++       NF QT+F  Q     + P  + QA       + GN    + G +G  Q  E
Sbjct: 533 DNGLNLGLGNFHQTDFSFQHNVMAQNPAPKPQAPVQPIFQQAGNARFLSSGQTGLRQPGE 592

Query: 543 KRCNE 547
            +  E
Sbjct: 593 DKSKE 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741054|emb|CBI31785.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 184/361 (50%), Gaps = 63/361 (17%)

Query: 29  KIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIG 88
           K++ E+ T +GLPPGW KEIK+ K    VRRD YY DP +GYIFRSMKD +RY++TG+ G
Sbjct: 93  KVVFERVTAEGLPPGWIKEIKIQKKCGTVRRDAYYTDPVNGYIFRSMKDTLRYLKTGDPG 152

Query: 89  RLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDIT-SQSTKLSEVAKDEDAL 147
           RLA+KPK   + D  +LEDDK  SP   +KQ+L   G    IT  QS KL ++A DE   
Sbjct: 153 RLAFKPKPRDSGD-INLEDDKTYSPVVPRKQELAGGGARRQITRGQSLKLGKIASDEGIP 211

Query: 148 DSAVEAGTELRGS-NLSEAKDSDKMDYRKDSDKNVL-STPVVVVLPQGQSSDVGEMMDET 205
            SA         S  LSEAK S+ +  + D  KNVL S P+V  L + Q  +    +   
Sbjct: 212 KSACSGAKVTESSLYLSEAKGSEPIGEKSDDAKNVLDSAPLVEPLAEKQPLENRAKVCGK 271

Query: 206 MNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAF 265
             T  G    R KK  DLPRRASKRLAGL  D TPELKT+NR                  
Sbjct: 272 RKTQPGLCNYRNKKSHDLPRRASKRLAGLEADVTPELKTTNR------------------ 313

Query: 266 CSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCK 325
             GS+V  A+    ++EA+ +A                               K+E   K
Sbjct: 314 --GSRV--AAGHSGEIEAEEQAE------------------------------KVEAENK 339

Query: 326 SDQPQGCAVDLTM-------KHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTL 378
             +  GC++ L +       +H    E + +   NP P  +LPFGD  +DPCI FAIKTL
Sbjct: 340 DKEKHGCSLSLPLGDGPIPIEHAGVAEDENKGAGNPEPPHELPFGDSWTDPCIEFAIKTL 399

Query: 379 T 379
           T
Sbjct: 400 T 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446179|ref|XP_004140849.1| PREDICTED: uncharacterized protein LOC101215200 [Cucumis sativus]

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 171/546 (31%), Positives = 265/546 (48%), Gaps = 62/546 (11%)

Query: 31  IIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRL 90
           ++ +++ D LPPGWT ++KV K+G+K   D  YIDP +G   RS++D  RY+ +G++ RL
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKK---DKSYIDPVNGNALRSIRDVHRYLTSGKVSRL 57

Query: 91  AYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDI--TSQSTKLSEVAKDEDALD 148
            +K ++  + + E  + D+ +SP  +KK+ L +      I  +  +++ SE+   E    
Sbjct: 58  THKSRNQRDNNIE-FQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFP 116

Query: 149 SAVEAGTEL---------------RGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQG 193
           +A    T L                 S  ++AK   + D + D  + VL TP   +  + 
Sbjct: 117 NASVGETVLFPIPDPSLGGISAKPHCSTPTDAKGLKQSDGKNDISEIVL-TPKEFIQHKC 175

Query: 194 QSSDVGEMMDETMNTTLGKSMSRKKKVFD--LPRRASKRLAGLALDPTPELKTSNRVRR- 250
              +           T G+S  R++K  D  LPRRASKRLAGL  +P  ++KT  R R  
Sbjct: 176 PIEN---------GATKGESRKRQRKTNDINLPRRASKRLAGLQAEPVLQVKTGRRARSV 226

Query: 251 --KQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKH 308
             ++SDK  AS+T           +A Q P+  + K + N   D SK      +  +A H
Sbjct: 227 ACEESDKQVASTTK---------LVAFQCPENPDVKHKTNSTADPSKINTSPDSGGKA-H 276

Query: 309 PSGDLNASSGKIETGCKSDQPQGCAV----DLTMKHPDNIETDIEAD-KNPSPLIDLPFG 363
              DL+             QP+  +     D+  KH   +E + +A+ K   PL+ LP  
Sbjct: 277 ICVDLSIVMKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLPME 336

Query: 364 DLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQ- 422
           DLL+DPCIAFA+KTLTG+  + S   + SL  N    + F         +R N G E + 
Sbjct: 337 DLLTDPCIAFAVKTLTGDVLDASISSDASLTPN--HVDPFTPF---TPNERCNSGPENKL 391

Query: 423 -ENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDV 481
            E +A  E   A V       EKL++ L+LP  +I+ DPCIEFAIKTLTG IP+ N+ D+
Sbjct: 392 NEKVACPELPVARVGKVENNVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNRDI 451

Query: 482 QDYFQQQINSSQTQPNNNFCQ---TEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSGFH 538
           +DYF Q   S   + N N       ++ C+   S ++   +    +  ++ Q   G+G H
Sbjct: 452 EDYFYQFSTSKTEKTNENASDQPGLDYFCKTNVSQKQQAIQALGASPKINFQT-CGTGLH 510

Query: 539 QQSEKR 544
            Q   R
Sbjct: 511 HQERNR 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520114|ref|XP_004167079.1| PREDICTED: uncharacterized protein LOC101225631 [Cucumis sativus]

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 149/493 (30%), Positives = 233/493 (47%), Gaps = 81/493 (16%)

Query: 31  IIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRL 90
           ++ +++ D LPPGWT ++KV K+G+K   D  YIDP +G   RS++D  RY+ +G++ RL
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKK---DKSYIDPVNGNALRSIRDVHRYLTSGKVSRL 57

Query: 91  AYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDI--TSQSTKLSEVAKDEDALD 148
            +K ++  + + E  + D+ +SP  +KK+ L +      I  +  +++ SE+   E    
Sbjct: 58  THKSRNQRDNNIE-FQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFP 116

Query: 149 SAVEAGTEL---------------RGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQG 193
           +A    T L                 S  ++AK  ++ D + D  + VL TP        
Sbjct: 117 NASVGETVLFPIPDSSLGGISAKPHCSTPTDAKGLNQSDGKNDISEIVL-TP-------- 167

Query: 194 QSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRR--- 250
                 E +        G +                   GL  +P  ++KT  R R    
Sbjct: 168 -----KEFIQHKCPIENGAT------------------KGLQAEPVLQVKTGRRARSVAC 204

Query: 251 KQSDKIEASST-VEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHP 309
           ++SDK  AS+T + AF          Q P+  + K + N   D SK      +  +A H 
Sbjct: 205 EESDKQVASTTKLVAF----------QCPENPDVKHKTNSTADPSKINTSPDSGGKA-HI 253

Query: 310 SGDLNASSGKIETGCKSDQPQGCAV----DLTMKHPDNIETDIEAD-KNPSPLIDLPFGD 364
             DL+             QP+  +     D+  KH   +E + +A+ K   PL+ LP  D
Sbjct: 254 CVDLSIVMKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLPMED 313

Query: 365 LLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQ-- 422
           LL+DPCIAFA+KTLTG+  + S   + SL  N    + F         +R N G E +  
Sbjct: 314 LLTDPCIAFAVKTLTGDVLDASISSDASLTPN--HVDPFTPF---TPNERCNSGPENKLN 368

Query: 423 ENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQ 482
           E +A  E   A V       EKL++ L+LP  +I+ DPCIEFAIKTLTG IP+ N+ D++
Sbjct: 369 EKVACPELPVARVGKVENNVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNRDIE 428

Query: 483 DYFQQQINSSQTQ 495
           DYF  Q ++S+T+
Sbjct: 429 DYF-YQFSTSKTE 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561673|ref|XP_003549104.1| PREDICTED: uncharacterized protein LOC100778412 [Glycine max]

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 178/613 (29%), Positives = 262/613 (42%), Gaps = 147/613 (23%)

Query: 6   NSDELLPDGCRVEVRVRKNGKKDK------------------------------------ 29
           NSD  LP G  VEVRVRKNGK+DK                                    
Sbjct: 5   NSDCWLPPGWTVEVRVRKNGKRDKYYFPPSSGLKFNSKVEVFRYLDNAQNKVSIQKISPN 64

Query: 30  IIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGR 89
           +I+EK   +GLPPGW K+ ++T  G  VRRD             S    V+   +  +G+
Sbjct: 65  VIVEKAIAEGLPPGWVKKTRITTNGDSVRRD------------TSTSVTVKPTLSISMGQ 112

Query: 90  LAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDS 149
                    + D + + +D+    +A+ ++ + V  +E  I++Q                
Sbjct: 113 ---------SSDMDMIANDQQIPRSASSEEYMSVPISEC-ISNQCV-------------- 148

Query: 150 AVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTT 209
               G +L  S LS AK SDK    K     V  +  V       + +  + + E   T 
Sbjct: 149 ---VGAKLTSSVLSLAKSSDK----KQGKVGVAQSASVSGCTNKDAEE--KQLQENSETK 199

Query: 210 LGKSMSRKK---------KVFDLPRRASKRLAGLALDPTPELKTSNRVRR---KQSDKIE 257
            G   ++ K         K  +LPRRASKRLAG+ +DP PELK  NR RR   KQS++ E
Sbjct: 200 HGTEKAQAKDPQCKNKHKKEINLPRRASKRLAGIKVDPVPELKIRNRARRVAVKQSEEEE 259

Query: 258 ASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASS 317
             + V+   +     LA Q+ +            DT K+ EV  +  E +  S     ++
Sbjct: 260 TITNVDKSANSLLDGLAKQKLNNE----------DTDKTLEVQRSDKEKECFSFSSLENN 309

Query: 318 GKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKT 377
             +E  C      G  VD  + +                 +D P  +LL+DPCIAFAI+T
Sbjct: 310 ATVEE-CVRVIENGDKVDAKLDY----------------TLDFPLRELLTDPCIAFAIQT 352

Query: 378 LTGETFETSSDKEVSLE---SNSGKSEGFAFLEGQAGKKRENEGE-----EKQENLATSE 429
           LTG TFE S D +   E   S   K+   A   G+   K+ N+G         ENL+   
Sbjct: 353 LTGVTFEASKDLQTFSELKNSQHSKTSASAAAIGEGDGKKSNDGLGGNEFSSPENLSIPP 412

Query: 430 EQAANVESKLKTDEKLENPLDLPFADI--WRDPCIEFAIKTLTGAIPVGN-DWDVQDYFQ 486
           E A + ++ LK   +   P      D+  W DPCIEFAIKTLTG IP  + D + ++  Q
Sbjct: 413 EHAGDAKTDLKAKNENAGPSSEKTLDMSSWMDPCIEFAIKTLTGTIPSDSADQNPKNCLQ 472

Query: 487 QQINSSQTQPN---------NNFCQTEFLCQQFDSLEKPVSREQA-------RTGNLSIQ 530
           QQ++SS +Q +         +N  +T++ C Q+   +KP+  +Q+        T N+ I 
Sbjct: 473 QQLSSSNSQHSEMALSSVSLDNIYKTDYSCSQYFDTQKPMFNKQSFVDPSLQHTRNIGIG 532

Query: 531 NPGGSGFHQQSEK 543
           N  GS      E+
Sbjct: 533 NSAGSRLSHCGER 545

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134745|ref|XP_002321896.1| methyl binding domain protein [Populus trichocarpa] gi|222868892|gb|EEF06023.1| methyl binding domain protein [Populus trichocarpa]

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 108/193 (55%), Gaps = 45/193 (23%)

Query: 1   MGDRENSDELLPDGCRVEVRVRKNGKKDK------------------------------- 29
           MGD   SD+ LP+G RVEV+VR +GKKDK                               
Sbjct: 1   MGD-PKSDDWLPEGWRVEVKVRNSGKKDKFYFPPTGGFRFNSKIEVSRYLNGSHPKSEEK 59

Query: 30  -----------IIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDA 78
                      ++IEK  P+GLP GWTKEIKVTK G ++RRDP+Y DP SG +FRSMK+A
Sbjct: 60  VGSNDQWSSNKVVIEKTVPEGLPLGWTKEIKVTKKGGRIRRDPFYTDPVSGCVFRSMKEA 119

Query: 79  VRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITS-QSTKL 137
            RY+E+G +GRLA+K     N   E L+DDK  SP   +KQ LEV  T + +T  QS K 
Sbjct: 120 HRYIESGVVGRLAFKRNRKDNYVVE-LKDDKTCSPAVAEKQDLEVNETPSPVTGDQSLKA 178

Query: 138 SEVAKDEDALDSA 150
            E+AK E  L+SA
Sbjct: 179 CEIAKHEQILNSA 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742566|emb|CBI34715.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 164/367 (44%), Gaps = 54/367 (14%)

Query: 29  KIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIG 88
           K++IE+ T DGLP GW KEIK+      +RRDPYY DP SGY+FRS KD  RY++TGEI 
Sbjct: 106 KVVIERSTADGLPAGWIKEIKIRMNENGIRRDPYYTDPVSGYVFRSRKDVFRYLKTGEIS 165

Query: 89  RLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALD 148
           R A+KPK+      E L +D+ + P   K+QKL    T   + S             A  
Sbjct: 166 RHAFKPKNKCINVPE-LPNDEISPPPGAKRQKLMHQKTRRRLFS-------------ATA 211

Query: 149 SAVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVV----VLPQGQSSDVGEMMDE 204
           SA    +E+   +L E + S +        K  L  P       +L + +     +    
Sbjct: 212 SADTGSSEMSNLSLPENQGSRQTKQLFSKPKFALEPPTETLQEKLLVENEKYAESKKSSG 271

Query: 205 TMNTTLGKSMSRKKKV----FDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASS 260
             N+ L K    K+K      +LP R+SKRLAGL  D      +S +     +DKI   S
Sbjct: 272 RRNSDLQKDKGSKRKSKNKDCNLPCRSSKRLAGLKPDLVGNSGSSEQA-LAVADKISGKS 330

Query: 261 TVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDL------N 314
            V          L +    QLE   EA      S++ E  S   ++K  +  L       
Sbjct: 331 EVIPALGVVMGSLDNTACCQLEVVLEAEPGHHASRAIEAPSDVEQSKKDNRHLEDEAVQE 390

Query: 315 ASSGKIETGCKS-DQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAF 373
             +GK+ETG K+ D+P+                         P +D PF D+ SDPC+ F
Sbjct: 391 EEAGKLETGKKTGDEPE------------------------LPPMDFPFMDVWSDPCLEF 426

Query: 374 AIKTLTG 380
           A KTLTG
Sbjct: 427 AFKTLTG 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242941|ref|NP_200036.1| methyl-CPG-binding domain protein 13 [Arabidopsis thaliana] gi|334188334|ref|NP_001190520.1| methyl-CPG-binding domain protein 13 [Arabidopsis thaliana] gi|75180473|sp|Q9LTJ8.1|MBD13_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 13; Short=AtMBD13; Short=MBD13; AltName: Full=Methyl-CpG-binding protein MBD13 gi|8885536|dbj|BAA97466.1| unnamed protein product [Arabidopsis thaliana] gi|332008805|gb|AED96188.1| methyl-CPG-binding domain protein 13 [Arabidopsis thaliana] gi|332008806|gb|AED96189.1| methyl-CPG-binding domain protein 13 [Arabidopsis thaliana]

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 148/280 (52%), Gaps = 47/280 (16%)

Query: 16  RVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRS 74
           +VE+RVRKNG+KDK+I+EK    GLP GW K++++T ++GRK RRDP++IDP S YIF+S
Sbjct: 15  KVEIRVRKNGRKDKVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQS 74

Query: 75  MKDAVRYVETGEIG-----------------------RLAY---KPKDDGNQDEEDLED- 107
            KDA RYVETG IG                       RL Y   +  DD  + E+ ++D 
Sbjct: 75  FKDASRYVETGNIGHYARKLKESDIEDDDSGNGKTVLRLEYVDKRSADDVLEKEKTIDDV 134

Query: 108 ----DKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDE---DALDSAVEAGTELRGS 160
                ++ S +    +  ++T   + +TSQ   L ++ K E   D ++  + A    R  
Sbjct: 135 RRSKRRNLSSSDEHSKNCKMTSDLSIVTSQV--LEDLGKKEEVKDPIEKQLIAKRVTRSQ 192

Query: 161 NLSEAKDSDKMDYRKD-------SDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKS 213
             +   +   +D +++       S+K+ +++ V    P+ ++    E   ++    + +S
Sbjct: 193 TKASTTEEVVVDLKRNLSSSNAKSEKDSVNSSVRSQKPKKEAVMKEEEEQDSSEKRITRS 252

Query: 214 MSRKKK---VFDLPRRASKRLAGLALDPTPELKTSNRVRR 250
              +KK      + RR SKRLAG+ L+PTPELKT  +V+R
Sbjct: 253 KVEEKKNELSNSVARRTSKRLAGIELEPTPELKTRAKVQR 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	549
TAIR|locus:2145091	746	MBD13 "methyl-CPG-binding doma	0.610	0.449	0.282	1.8e-35
DICTYBASE|DDB_G0293562	527	DDB_G0293562 [Dictyostelium di	0.601	0.626	0.221	3e-06
FB|FBgn0037836	2743	CG14692 [Drosophila melanogast	0.650	0.130	0.230	6.9e-06
UNIPROTKB|E9PTW3	952	Dspp "Dentin sialophosphoprote	0.628	0.362	0.195	8.8e-06
FB|FBgn0036203	1514	Muc68D "Mucin 68D" [Drosophila	0.633	0.229	0.216	4.1e-05
POMBASE|SPAC140.02	500	gar2 "nucleolar protein requir	0.387	0.426	0.225	5.8e-05
UNIPROTKB|F1PHT7	435	DMP1 "Uncharacterized protein"	0.599	0.756	0.209	7.6e-05
TAIR|locus:2133847	763	AT4G26630 [Arabidopsis thalian	0.457	0.328	0.261	0.00013
DICTYBASE|DDB_G0289719	1419	DDB_G0289719 "SFRS2-interactin	0.591	0.229	0.217	0.00024
ZFIN|ZDB-GENE-050309-191	946	mphosph8 "M-phase phosphoprote	0.772	0.448	0.215	0.00029

TAIR|locus:2145091 MBD13 "methyl-CPG-binding domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
 Identities = 100/354 (28%), Positives = 166/354 (46%)

Query:    16 RVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRS 74
             +VE+RVRKNG+KDK+I+EK    GLP GW K++++T ++GRK RRDP++IDP S YIF+S
Sbjct:    15 KVEIRVRKNGRKDKVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQS 74

Query:    75 MKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQS 134
              KDA RYVETG IG  A K K+    D ED  DD  N  T  + + ++    + D+  + 
Sbjct:    75 FKDASRYVETGNIGHYARKLKES---DIED--DDSGNGKTVLRLEYVDKRSAD-DVLEKE 128

Query:   135 TKLSEVAKDEDA-LDSAVEAGTELR-GSNLSEAKDSDKMDY-RKDSDKNVLSTPVV---V 188
               + +V + +   L S+ E     +  S+LS        D  +K+  K+ +   ++   V
Sbjct:   129 KTIDDVRRSKRRNLSSSDEHSKNCKMTSDLSIVTSQVLEDLGKKEEVKDPIEKQLIAKRV 188

Query:   189 VLPQGQSSDVGEMM-DETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNR 247
                Q ++S   E++ D   N +   + S K  V    R    +   +  +   +  +  R
Sbjct:   189 TRSQTKASTTEEVVVDLKRNLSSSNAKSEKDSVNSSVRSQKPKKEAVMKEEEEQDSSEKR 248

Query:   248 VRRKQSD--KIEASSTVEAFCSGSQVHLASQQPDQLE--AKPEANCAFDTSKSTEVSSAT 303
             + R + +  K E S++V    S     +  +   +L+  AK +     D   + E+ + T
Sbjct:   249 ITRSKVEEKKNELSNSVARRTSKRLAGIELEPTPELKTRAKVQRIVPLDDEPTPELKTRT 308

Query:   304 SEAKH-PSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSP 356
                +  P  D      K  T  +   P      L +K    ++  +  D   +P
Sbjct:   309 KVQRVVPPDDEPTPELKTRTKIQRIVPPDDEPTLELKTRTKVQRILPPDDELTP 362

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008150 "biological_process" evidence=ND

GO:0008327 "methyl-CpG binding" evidence=ISS

DICTYBASE|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)]

 Score = 141 (54.7 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 81/365 (22%), Positives = 155/365 (42%)

Query:    93 KPKDDGNQDEEDLEDDKDNSPTAT-KKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAV 151
             K K + +   +    D  +S +   KK+K E+   ET    +  + S+ + D D+ DS+ 
Sbjct:   107 KKKVESSDSSDSSSSDSSSSESEDEKKKKKEIKKVETKKPIKKVESSD-SSDSDSSDSSS 165

Query:   152 EAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLG 211
             E        +  + KD+ K++ +K   K V +  V     + +SSD  +  D   +++  
Sbjct:   166 E--------DEKKKKDNKKVETKKVETKKVETKKVET--KKEESSD-SDSSDSDSSSSES 214

Query:   212 KSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQV 271
             +S   KKK  D  +   K+    +     E +  N+  +K   K E SS  ++  S S+ 
Sbjct:   215 ESEDEKKKK-DTKKVEIKKEESESESSESESEDENKDNKKVGTKKEESSDSDSSSSESES 273

Query:   272 HLASQQPD--QLEAKPE----ANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCK 325
                 ++ +  ++EAK E    +    ++  S+  SS++SE++         S K+ET  +
Sbjct:   274 EDEKKKKNNKKVEAKKEESSDSESESESESSSSSSSSSSESESEDEKKKKDSKKVETKKE 333

Query:   326 SDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFET 385
                    + +       +IE  +E  K  S        D  S+     + ++   E  + 
Sbjct:   334 GSSDSESSSESVEDEKMDIEK-VEIKKEES-------SD--SESSSPASSESKEEEKMDI 383

Query:   386 SSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEKL 445
               ++    ES+S  SE     E +  KK +++ +E  E+    EE +++ ES+   DEK 
Sbjct:   384 EKEETKKEESSSSSSESEE--EQKKSKKEDSDSDESSEDEKKKEESSSSSESE---DEKK 438

Query:   446 ENPLD 450
             +   D
Sbjct:   439 KEDSD 443

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0037836 CG14692 [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
 Identities = 91/394 (23%), Positives = 178/394 (45%)

Query:    67 ASGYIFRSMKDA-VRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTG 125
             +SG I  S++++  ++VE  E   +A    D    +   LE +     T  ++ + + + 
Sbjct:   973 SSGDI--SIRESETKHVENRE--EMASTNLDSDQVENMKLEGEIGQLKTVFEQSEEKTSP 1028

Query:   126 TETD-ITSQSTKLSEVAKDEDALDSAVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLST 184
             T+++ + ++  K+S   K +++L+   +AG   R + L     S+K +     D+N    
Sbjct:  1029 TKSESLHAEDRKIS--GKSKESLE---DAGENDRSTLLENLPSSEK-ENSTSLDEN---- 1078

Query:   185 PVVVVLPQGQSSDVGEMMDE--TMNTTLG-KSMSRKKKVFDLPRR-ASKRLAGLALDPTP 240
             P    LP+ +S+ + E        +T+L  KS S K+K   L  + +S++    +LD TP
Sbjct:  1079 P----LPEKESTSLDEKPSSGTEKSTSLDEKSSSEKEKSTSLDEKPSSEKEKSTSLDETP 1134

Query:   241 --ELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTE 298
               E + S  +  K S + E++S  E   SG++   ++   ++  ++ E + + D   S+E
Sbjct:  1135 SSEKENSTSLDEKPSPEKESTSLDEKPSSGTEK--STSLDEKSSSEKEKSTSLDEKPSSE 1192

Query:   299 VSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLI 358
                +TS  + PS +   S+  +E    +  P+  +  L  K     E     D+NPS   
Sbjct:  1193 KEKSTSLNERPSSEKENSTSLVE----NPSPEKESTSLDEKPSSGTEKSTSLDENPSSEK 1248

Query:   359 DLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSL-ESNSGKSEGFAFLEGQAGKKRENE 417
             +     L   P       T   E   + ++K  SL E  S + E    L+G+   ++E +
Sbjct:  1249 EKSTS-LNERPSSEKENSTSQDEKPSSETEKSTSLDEKPSSEKEKSTSLDGKPSSEKE-K 1306

Query:   418 GEEKQENLATSEEQAANVESKLKTDEKLENPLDL 451
                  EN ++ +E++ ++  +  + EK EN   L
Sbjct:  1307 STSLDENPSSEKEKSTSLNER-PSSEK-ENSTSL 1338

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0032027 "myosin light chain binding" evidence=RCA

UNIPROTKB|E9PTW3 Dspp "Dentin sialophosphoprotein" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 8.8e-06, P = 8.8e-06
 Identities = 69/353 (19%), Positives = 139/353 (39%)

Query:    96 DDGNQDEEDLEDDKDNSPTATKKQKLEVT-GTETDITSQSTKLSEVAKDEDALDSAVEAG 154
             D  + D  D  D  D+S ++      E +  +++  +S S++ SE ++  D+ DS+ ++ 
Sbjct:   595 DSSDSDSNDSSDSSDSSDSSDSSDSSESSDSSDSSDSSDSSESSESSESSDSSDSS-DSS 653

Query:   155 TELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSM 214
                  S  SE+ DS       DSD +  S+          SSD  +  D + ++    S 
Sbjct:   654 DSSDSSESSESSDSSDSSDSSDSDSSD-SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSD 712

Query:   215 SRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLA 274
             S      D    +    +  + D +    +SN      SD  ++S + ++  S      +
Sbjct:   713 SSDSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSDSSDSSDSSDSSDSSDSSDSSDSSD-S 771

Query:   275 SQQPDQLEAKPEANCAFDTSKSTEVS-SATSEAKHPSGDLNASSGKIETGCKSDQPQGCA 333
             S   D  ++   ++ + D+S S++ S S+ S     S D + SS   ++   SD     +
Sbjct:   772 SDSSDSSDSSDSSDSS-DSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNSSDS 830

Query:   334 VDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSL 393
              D +     +  +D     + S   D       SD   +    +  G++  + SD   S 
Sbjct:   831 SDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDGDSSDGDS--SDSDSSDSD 888

Query:   394 ESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEKLE 446
              SNS  S+     +  +    +++ + K     +S++ + +      +D   E
Sbjct:   889 SSNSSDSDSSDSSDSSSSDSSDSDSDSKDSTSDSSDDDSKSGNGNSDSDSDSE 941

GO:0071460 "cellular response to cell-matrix adhesion" evidence=IEA

FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)]

 Score = 136 (52.9 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 83/384 (21%), Positives = 163/384 (42%)

Query:    90 LAYKPKDDGNQDE--EDLEDDKDNSPTATKKQKLEV-TGTETDITSQSTKLSEVAKDEDA 146
             L+ +P  + N+    E  +D      +++ +  L   + TE    S ST+ S+ +  +++
Sbjct:   552 LSTEPSTEANESSSTESSQDSTTQESSSSTEDPLSTESSTEATNESSSTESSQDSTTQES 611

Query:   147 LDS-----AVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEM 201
               S     + E+ TE  GSN S + +S + D       +   +P+    P  ++++    
Sbjct:   612 SSSTEGPLSTESSTE--GSNESSSTESSQ-DSTTQKSSSSTESPLSTE-PSTEANESSST 667

Query:   202 MDETMNTTLGKSMSRKKKVFDLPRRASKRLAGL--ALDPTPELKTSNRV----RRKQSDK 255
                  +TT   S S +  +   P   +   +    + D T +  +S+          ++ 
Sbjct:   668 ESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQESSSSSEGPLSTESSTEA 727

Query:   256 IEASSTVEAFCSGSQVHLAS-QQPDQLEAKPEANCAFDTSKS----TEVSSATSE---AK 307
              E+SST  +  S +Q   +S + P   E   EAN +  T  S    T+ SS+++E   + 
Sbjct:   728 NESSSTESSQDSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGPLST 787

Query:   308 HPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLI--DLPFGDL 365
              PS + N SS   E+   S   +  +   + + P + E+  EA+++ S     D    + 
Sbjct:   788 EPSTEANESSST-ESSQDSTTQESSS---SSEGPLSTESSTEANESSSTESSQDSTTQES 843

Query:   366 LS---DPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQ 422
              S   DP    +    T E+  T S ++ + + +S  +EG    E       E+   E  
Sbjct:   844 SSSTEDPLSTESSTEATYESSSTESSQDSTTQESSSSTEGPLSTESSTEGSNESSSTESS 903

Query:   423 ENLATSEEQAANVESKLKTDEKLE 446
             ++ +T++E +++ ES L T+   E
Sbjct:   904 QD-STTQESSSSTESPLSTEPSTE 926

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISM

GO:0005201 "extracellular matrix structural constituent" evidence=ISM

POMBASE|SPAC140.02 gar2 "nucleolar protein required for rRNA processing" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 129 (50.5 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 51/226 (22%), Positives = 103/226 (45%)

Query:   212 KSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQV 271
             K ++++    D+  + SK+ A  A  P P  K S + ++K   K E+SS  E+  S S+ 
Sbjct:    38 KEIAKQSSKTDVSPKKSKKEAKRASSPEPS-KKSVKKQKKSKKKEESSSESESESSSSES 96

Query:   272 HLASQQPDQLEAKPEANCAFDTSKSTE--VSSATSEAKHPSGDLNASSGKIETGCKSDQP 329
               +S + +   ++ E++ +  +S  +E  V   T E K  S + ++SS       +S++ 
Sbjct:    97 ESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSS-------ESEEE 149

Query:   330 QGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDK 389
             +   V +  K   + ++  E+  + S            +  +    +   G + E+SSD 
Sbjct:   150 EEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSS-ESSSDS 208

Query:   390 EVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANV 435
             E S +S+S   +  +  + ++    E+E + K E    SEE+ A +
Sbjct:   209 ESSSDSSSESGDSDSSSDSESESSSEDEKKRKAE--PASEERPAKI 252

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

GO:0006364 "rRNA processing" evidence=IMP

GO:0007000 "nucleolus organization" evidence=IMP

GO:0042254 "ribosome biogenesis" evidence=IMP

UNIPROTKB|F1PHT7 DMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 76/362 (20%), Positives = 151/362 (41%)

Query:    93 KPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQ-----STKLSEVAKDEDAL 147
             K +   N+D  D    +++SP+  +    + T    D+ ++     S +  +  ++ ++ 
Sbjct:    47 KSRLKSNEDSADSTQSREDSPSLGEDSAQDTTSESRDLDNEDEMNSSPERGDSVQESESK 106

Query:   148 DSAVEAGTELRGSNL--SEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDET 205
             +  V  G+E   S+   SE  D +  +   D+ +N      +           G   ++ 
Sbjct:   107 EHWVGGGSEGDSSHGDGSEFGDEEMQNDDPDTIRNERGNSRMNSASVKSEESKGNSDEQA 166

Query:   206 MNTTLGKSMSRKKKVFDLPRRASKRLAGLAL-DPTPELKTSNRVRRKQSDKIEASSTVEA 264
                  G S S      + PRR   R + ++  D   EL  SN +   +SD  E +++ E 
Sbjct:   167 STQDSGDSQS-----MEYPRRKIFRKSRISEEDDIGELDDSNTMEEVKSDSTENANSKET 221

Query:   265 FCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATS-EAKHPSGDLNASSGK-IET 322
               S S+ +  S+  ++ E   E     D+    + SS +S E   PS + ++ S + + T
Sbjct:   222 GLSQSRENSESESVEESE---ENQSQEDSQNIQDPSSESSQEVDLPSQENSSESQEEVVT 278

Query:   323 GCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGET 382
               + D P     D T  H D  ++D  +++N    ++ P     S+     A  + + E+
Sbjct:   279 ESRGDNP-----DNTTSHSDQEDSD-SSEENS---LNKPSSSE-SESTEEQA-DSESNES 327

Query:   383 FETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVE--SKLK 440
               +S +   S E NS   E        A  + ++E  + +++  + E+ A++ +  SKLK
Sbjct:   328 LRSSEESPESTEENSSSQEDLQ--SHSASAESQSEESQSEQDSQSEEDDASDSQDSSKLK 385

Query:   441 TD 442
              D
Sbjct:   386 ED 387

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0001503 "ossification" evidence=IEA

TAIR|locus:2133847 AT4G26630 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 0.00013, P = 0.00013
 Identities = 71/272 (26%), Positives = 119/272 (43%)

Query:     9 ELLPDGCRV-EVRVRK-NGKKDKII------IEKDTPDGLPPGWT--KEIKVTKTGRKVR 58
             E L + C V ++ + K   KK+ II      +EK    G   G T   E + +  G K +
Sbjct:   421 EKLWEFCDVLDIHITKATTKKEDIITKLFEFLEKPHVTGDVTGDTTVSEKEKSSKGAKRK 480

Query:    59 RDPYYIDPASGYIF--RSMKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTAT 116
             R P    P +G     RS K   +  E  ++ + +    DD +++E++ E+ ++      
Sbjct:   481 RTPKKTSPTAGSSSSKRSAKSQKKSEEATKVVKKSLAHSDDESEEEKEEEEKQEEEKAEE 540

Query:   117 KKQKLEV---TGTETDITSQSTKLSEVA-KDEDALDSAVEAGTELRGSNLSEAK-DSDKM 171
             K++K E     G       ++ + SE   KDE    S  E   + RGS LS  K +S   
Sbjct:   541 KEEKKEEENENGIPDKSEDEAPQPSESEEKDESEEHSEEETTKKKRGSRLSAGKKESAGR 600

Query:   172 DYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRL 231
                K +     S+P   +  Q +SS   +  D+  +T+   S  RKK   + P +AS   
Sbjct:   601 ARNKKAVVAAKSSPPEKIT-QKRSSAKRKKTDDDSDTSPKASSKRKKS--ENPIKASPAP 657

Query:   232 AGLALDPTPELKTSNRVRRKQSDKIEASSTVE 263
             +  A    P +K + + + K SDK+  ++ VE
Sbjct:   658 SKSASKEKP-VKRAGKGKDKPSDKVLKNAIVE 688

GO:0005634 "nucleus" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0289719 DDB_G0289719 "SFRS2-interacting protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 130 (50.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 77/354 (21%), Positives = 144/354 (40%)

Query:   101 DEEDLEDDKDNSPTATKKQKLE---VTGTETDITSQSTKLSEVAKDEDALDSAVEAGTEL 157
             +EE +++DK +  +  KK+K E    T T T  T+ +T   +    ++ ++      T+ 
Sbjct:   248 EEEVVKEDKVDKKSKKKKEKAEKKQTTTTTTTTTATTTTKGKSNVGKNLINENRVNETDD 307

Query:   158 RGSNLSEAKDSDKMDYRKDSDKNV-LSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSR 216
               +N +   ++   +++  +DK   LS  ++    +    D  E   E       K  ++
Sbjct:   308 DNNNNNNHNNNANNEFKSITDKKQKLSNNIIKKKEESDDDDEKEKEKE-------KEKNK 360

Query:   217 KKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQ 276
             K K  ++ +  SK    +   PT      ++  +  SDKI  + T+E     SQ    S+
Sbjct:   361 KLKNSNINKNNSKESQSIKKSPTKSQPKQSK--KNASDKI--TKTIEE----SQSESESE 412

Query:   277 QPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDL 336
             +P ++  K         SK     S     K     +N SS K      S Q +  AV+ 
Sbjct:   413 EPIEISKKSTDKPILKQSKKKPSESEEESEKEQKKIVNKSSTKPI----SKQSKKKAVES 468

Query:   337 TMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKT---LTGETFETSSDKEVSL 393
               +      ++ E+++     ++      +S      A+++      E+ E S ++E S 
Sbjct:   469 ESEEESEPGSEEESEEESKKAVNKASAKPISKQSKKKAVESEPESESESDEESEEEEESE 528

Query:   394 ESNSGK--SEGFAFLEGQAGKKR-ENEGEEKQENLATSEEQAANVESKLKTDEK 444
             E  + K  ++  +    Q+ KK  E+E E K E     EE+    ESK K+  K
Sbjct:   529 EEETNKVVTKSTSKPLKQSKKKEIESESESKSEEEEEEEEEEKEEESKKKSSSK 582

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-050309-191 mphosph8 "M-phase phosphoprotein 8" [Danio rerio (taxid:7955)]

 Score = 126 (49.4 bits), Expect = 0.00029, P = 0.00029
 Identities = 99/459 (21%), Positives = 183/459 (39%)

Query:     5 ENSDELLPDGCRVEVRVRKNGKKDKIII--EKDTPDGLPPGWTKEIKVTKTGRKVRRDP- 61
             E+SD+ +    + + + ++  ++DK +   E D  +   P      K TK  R +  D  
Sbjct:   121 EDSDDEMSVREKKKKKKKEKWREDKPLPAPESDEEESRDPSPAPSKKETKK-RFIDSDDE 179

Query:    62 -YYIDPASGYIFRSMKDAVRYV-ETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQ 119
                + P         KDA +   E+GE  R   K K     D  D ED+K ++P+ +   
Sbjct:   180 DVPVTPKKQKKLDKPKDAGKVKKESGE-ERKKKKIKSKREIDSSD-EDEKSDAPSESHTD 237

Query:   120 KLEVTGTET-DITSQSTKLSEVAKDEDALDSAVEAGTELRGSNLSEAKDSDKMDYRKDSD 178
               + T TET D    +TK++E  K   +     E+G +L+   + + KD   +  +   D
Sbjct:   238 --DTTNTETNDSFKTTTKITE--KPVRS-----ESGGDLK--QVKQKKDKSDIKLQGFKD 286

Query:   179 KNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDP 238
               +   P         + DVG  +++  + T  KS S+  +  + P  +    A  A  P
Sbjct:   287 LILEKKPKKPEASSAAAKDVG--LNKIKSLTGSKSTSKSSRSEEEPDSSDTGAAASA--P 342

Query:   239 TPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTE 298
               ++K+ ++     S ++ ++S+     S S    A  +P + EAK EA      S   E
Sbjct:   343 KAKVKSKSQEAAPSSQRLSSASSSS---SSSTASTAPIKPREDEAKEEAGDKASASNLFE 399

Query:   299 VSSATSEAKHPSGDLNASSGKIET---GCKSDQPQGCAVDLTMKHPDNIETDIEADKNPS 355
                   EAK  +        K  T   G K+D+    +     + PD+ +T      + S
Sbjct:   400 KFLLNCEAKDRAPRRQVDQNKSATPKGGSKNDKKTKPSKQSPGRKPDSDKTKDVPRSSQS 459

Query:   356 PLIDLPFGDLLSDPCIAFAIKTLTGE-TFETSSD--KEVSLESNSGKSEGFAFLEGQAGK 412
             P I +   +              + E  F++  +  +E   E    + E     E +  +
Sbjct:   460 P-ISMEVDEKQEKGSSELEKSEKSDEPNFKSKEELQREQREEEQRKRKEKMEEEERKRKE 518

Query:   413 KRENEGEEKQENLATSE-EQAANVESKLKTDEKLENPLD 450
             + E E  +K+E +  ++ E+ A +E   +  E+    L+
Sbjct:   519 RIEEEERKKKERIEEAQRERKARLEEAQRFAEEARQELE 557

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: MBD912 methyl binding domain protein (763 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	549
cd01396	77	cd01396, MeCP2_MBD, MeCP2, MBD1, MBD2, MBD3, and M	5e-09
cd00122	62	cd00122, MBD, MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8	6e-09
smart00391	77	smart00391, MBD, Methyl-CpG binding domain	2e-05
pfam01429	75	pfam01429, MBD, Methyl-CpG binding domain	3e-05

>gnl|CDD|238690 cd01396, MeCP2_MBD, MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD)

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 40 LPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
          LPPGW +E+   K+G   + D YYI P +G  FRS  +  RY+E  + G  +    D
Sbjct: 7  LPPGWKRELVPRKSGSAGKFDVYYISP-TGKKFRSKVELARYLE--KNGPTSLDLSD 60

The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. Length = 77

>gnl|CDD|238069 cd00122, MBD, MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRL 90
          D LPPGW +E+ + K+G   + D YY  P  G   RS  +  RY+E      L
Sbjct: 4  DPLPPGWKRELVIRKSGSAGKGDVYYYSP-CGKKLRSKPEVARYLEKTGPSSL 55

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family. Length = 62

>gnl|CDD|128673 smart00391, MBD, Methyl-CpG binding domain

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 40 LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84
          LP GW +E K  K+GR   + D YYI P  G   RS  +  RY+  
Sbjct: 8  LPCGWRRETKQRKSGRSAGKFDVYYISP-CGKKLRSKSELARYLHK 52

Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain. Length = 77

>gnl|CDD|216497 pfam01429, MBD, Methyl-CpG binding domain

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 40 LPPGWTKEIKVTKTGRKVRR-DPYYIDPASGYIFRSMKDAVRYVE 83
          LPPGW +E +  K+G    + D YY  P +G  FRS  + +RY+E
Sbjct: 10 LPPGWRREERQRKSGSSAGKVDVYYYSP-TGKKFRSKSELIRYLE 53

The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	549
cd01396	77	MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me	99.33
PF01429	77	MBD: Methyl-CpG binding domain; InterPro: IPR00173	99.28
cd00122	62	MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and	99.18
smart00391	77	MBD Methyl-CpG binding domain. Methyl-CpG binding	98.87
cd01397	73	HAT_MBD Methyl-CpG binding domains (MBD) present i	98.7
KOG4161	272	consensus Methyl-CpG binding transcription regulat	97.98
cd01395	60	HMT_MBD Methyl-CpG binding domains (MBD) present i	96.58
KOG4161	272	consensus Methyl-CpG binding transcription regulat	93.61
PF01429	77	MBD: Methyl-CpG binding domain; InterPro: IPR00173	93.24
cd01396	77	MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me	89.76
KOG1891	271	consensus Proline binding protein WW45 [General fu	89.64
cd00122	62	MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and	86.66

>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD)

Probab=99.33  E-value=1.1e-12  Score=109.10  Aligned_cols=48  Identities=42%  Similarity=0.800  Sum_probs=43.5

Q ss_pred             CCCCCCCceEEEEEecCCCcccccccccCCCCCccccchHHHHHHHhhc
Q 008894           37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETG   85 (549)
Q Consensus        37 ~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGykFRSkkdV~RYLeTG   85 (549)
                      .-.||.||.+|+++|++|...++|.||++| +|++|||+++|.+||+..
T Consensus         4 ~~~lp~GW~r~~~~R~~gs~~k~DvyY~sP-~Gkk~RS~~ev~~yL~~~   51 (77)
T cd01396           4 DPRLPPGWKRELVPRKSGSAGKFDVYYISP-TGKKFRSKVELARYLEKN   51 (77)
T ss_pred             CCCCCCCCEEEEEEecCCCCCcceEEEECC-CCCEEECHHHHHHHHHhC
Confidence            345999999999999999767999999999 589999999999999974

The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.

>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer

Probab=99.28  E-value=2.8e-12  Score=105.37  Aligned_cols=50  Identities=40%  Similarity=0.780  Sum_probs=44.0

Q ss_pred             CCCCCCCCceEEEEEecCCCc-ccccccccCCCCCccccchHHHHHHHhhcc
Q 008894           36 TPDGLPPGWTKEIKVTKTGRK-VRRDPYYIDPASGYIFRSMKDAVRYVETGE   86 (549)
Q Consensus        36 ~~~~LP~GWvkE~~~Rk~G~~-ir~DkYY~DPvsGykFRSkkdV~RYLeTG~   86 (549)
                      .+.+||+||.+|+++|++|.. .+.|.||++| +|++|||+++|.+||+.+.
T Consensus         7 ~~~~Lp~GW~re~~~R~~g~~~~~~dv~Y~sP-~Gk~~RS~~eV~~yL~~~~   57 (77)
T PF01429_consen    7 LDPPLPDGWKREVVVRKSGSSAGKKDVYYYSP-CGKRFRSKKEVVRYLKENP   57 (77)
T ss_dssp             EBTTSTTT-EEEEEESSSSTTTTSEEEEEEET-TSEEESSHHHHHHHHTTSS
T ss_pred             ccCCCCCCCEEEEEEecCCCcCCceEEEEECC-CCCEEeCHHHHHHHHHhCC
Confidence            456899999999999998864 5899999999 9999999999999998766

Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.

>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

Probab=99.18  E-value=2e-11  Score=96.71  Aligned_cols=47  Identities=40%  Similarity=0.834  Sum_probs=43.1

Q ss_pred             CCCCCCceEEEEEecCCCcccccccccCCCCCccccchHHHHHHHhhc
Q 008894           38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETG   85 (549)
Q Consensus        38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGykFRSkkdV~RYLeTG   85 (549)
                      .+||.||.+|+++|+.|..++.|.||+.| +|++|||+.+|.+||...
T Consensus         4 ~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP-~Gk~~Rs~~ev~~yL~~~   50 (62)
T cd00122           4 DPLPPGWKRELVIRKSGSAGKGDVYYYSP-CGKKLRSKPEVARYLEKT   50 (62)
T ss_pred             CCCCCCeEEEEEEcCCCCCCcceEEEECC-CCceecCHHHHHHHHHhC
Confidence            47899999999999999777999999999 599999999999999864

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.

>smart00391 MBD Methyl-CpG binding domain

Probab=98.87  E-value=2e-09  Score=89.60  Aligned_cols=46  Identities=43%  Similarity=0.829  Sum_probs=41.7

Q ss_pred             CCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhh-cc
Q 008894           40 LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET-GE   86 (549)
Q Consensus        40 LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeT-G~   86 (549)
                      ||.||.+++++|+.|. ..+.|.||+.| +|++|||+.||.+||.. |+
T Consensus         8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP-~GkklRs~~ev~~YL~~~~~   55 (77)
T smart00391        8 LPCGWRRETKQRKSGRSAGKFDVYYISP-CGKKLRSKSELARYLHKNGD   55 (77)
T ss_pred             CCCCcEEEEEEecCCCCCCcccEEEECC-CCCeeeCHHHHHHHHHhCCC
Confidence            9999999999999984 56899999999 79999999999999974 44

Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain

>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity

Probab=98.70  E-value=1.4e-08  Score=84.84  Aligned_cols=58  Identities=19%  Similarity=0.472  Sum_probs=48.4

Q ss_pred             CCCCCCceEEEEEecCCCcccccccccCCCCCccccchHHHHHHHhh---ccccceeeccCC
Q 008894           38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVET---GEIGRLAYKPKD   96 (549)
Q Consensus        38 ~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvsGykFRSkkdV~RYLeT---G~Isr~a~kPk~   96 (549)
                      -.||-||..|+++|+.|.+++.|.||+.| +|++|||+.||.+||..   ..+++-.|....
T Consensus         4 ~Pl~~GW~Re~vir~~~~~~~~dV~Y~aP-cGKklRs~~ev~~yL~~~~~~~Lt~dnFsF~~   64 (73)
T cd01397           4 VPLELGWRRETRIRGLGGRIQGEVAYYAP-CGKKLRQYPEVIKYLSKNGISLLSRENFSFSA   64 (73)
T ss_pred             CCCCCCceeEEEeccCCCCccceEEEECC-CCcccccHHHHHHHHHhCCccCccHhHccccC
Confidence            35899999999999998778999999999 69999999999999985   445554444443

The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.

>KOG4161 consensus Methyl-CpG binding transcription regulators [Transcription; Chromatin structure and dynamics]

Probab=97.98  E-value=4.1e-06  Score=83.89  Aligned_cols=62  Identities=34%  Similarity=0.629  Sum_probs=51.0

Q ss_pred             CCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHh-hccccceeeccCCCC
Q 008894           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVE-TGEIGRLAYKPKDDG   98 (549)
Q Consensus        36 ~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLe-TG~Isr~a~kPk~r~   98 (549)
                      .|..||+||.++++.|++|. .++.|.||+.| .|.+|||+.+..+||+ .|+.+.-.++..+..
T Consensus        15 ~c~~lp~GW~~~~~~r~~~~~~g~~dv~~~sp-~g~~frsk~~l~~~~~~~~~~s~~~~v~~k~~   78 (272)
T KOG4161|consen   15 DCPALPPGWTREEVQRSSGLSAGKSDVYYISP-SGKKFRSKPQLARYLGKVGDLSLFDFVTGKMS   78 (272)
T ss_pred             cCCCCCCCcchhhhcccCCCcccccceEEeCC-cccccccccHHHHHhccccccccCcccccccc
Confidence            67789999999999999987 55999999999 7999999999999998 455555444444433

>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression

Probab=96.58  E-value=0.0021  Score=52.51  Aligned_cols=40  Identities=28%  Similarity=0.542  Sum_probs=35.8

Q ss_pred             CCceEEEEEecCCCcccccccccCCCCCccccchHHHHHHHh
Q 008894           42 PGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVE   83 (549)
Q Consensus        42 ~GWvkE~~~Rk~G~~ir~DkYY~DPvsGykFRSkkdV~RYLe   83 (549)
                      =||......|+.| +++.+.+|.-| .|++.|++.||++||-
T Consensus         8 ~gw~R~~~~~~~~-~~k~~V~Y~aP-CGr~Lr~~~EV~~YL~   47 (60)
T cd01395           8 CGFQRMKYRARVG-KVKKHVIYKAP-CGRSLRNMSEVHRYLR   47 (60)
T ss_pred             cCeEEEEEeccCC-CcccceEEECC-cchhhhcHHHHHHHHH
Confidence            5999999888777 56889999999 6999999999999995

SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.

>KOG4161 consensus Methyl-CpG binding transcription regulators [Transcription; Chromatin structure and dynamics]

Probab=93.61  E-value=0.021  Score=57.77  Aligned_cols=62  Identities=18%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             CCCCCCceEEEEEecCCCcc-cccccc--cCCCCCccccchHHHHHHHhhccccceeeccCCCCCCC
Q 008894           38 DGLPPGWTKEIKVTKTGRKV-RRDPYY--IDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQD  101 (549)
Q Consensus        38 ~~LP~GWvkE~~~Rk~G~~i-r~DkYY--~DPvsGykFRSkkdV~RYLeTG~Isr~a~kPk~r~~~d  101 (549)
                      .++++.|+.+..+|+.+..| -.|.||  .++..+..||.++..+-|++-+..-.  +..++....|
T Consensus       106 ~~~~P~~~t~~~~r~~~t~i~~~~~~~~~r~~~~~~~~~~q~~ql~~~~~~~~l~--~~s~~~e~~d  170 (272)
T KOG4161|consen  106 NLAIPIRATSCIFRRPGTKIRSHDKYEVKREPKAEDPFREQKKQLFWLERLQDLE--ADSSRGESID  170 (272)
T ss_pred             ccCCchhhhhccccccceeeccccchhhhhccccccccccccceEEEeccccccc--cccccccccC
Confidence            56999999999999999988 667888  88988899999999998887666433  3444444444

>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer

Probab=93.24  E-value=0.059  Score=44.75  Aligned_cols=23  Identities=48%  Similarity=0.663  Sum_probs=18.7

Q ss_pred             CCCCCCCCCCeeEEEEEccCCcc
Q 008894            5 ENSDELLPDGCRVEVRVRKNGKK   27 (549)
Q Consensus         5 e~s~~WLPdGW~vEvr~~knG~K   27 (549)
                      ...+.|||+||.+|++++++|+.
T Consensus         5 ~~~~~~Lp~GW~re~~~R~~g~~   27 (77)
T PF01429_consen    5 SPLDPPLPDGWKREVVVRKSGSS   27 (77)
T ss_dssp             ECEBTTSTTT-EEEEEESSSSTT
T ss_pred             ccccCCCCCCCEEEEEEecCCCc
Confidence            45678999999999999998743

Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.

>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD)

Probab=89.76  E-value=0.26  Score=41.59  Aligned_cols=16  Identities=44%  Similarity=0.667  Sum_probs=14.9

Q ss_pred             CCCCCeeEEEEEccCC
Q 008894           10 LLPDGCRVEVRVRKNG   25 (549)
Q Consensus        10 WLPdGW~vEvr~~knG   25 (549)
                      +||.||..|++++++|
T Consensus         6 ~lp~GW~r~~~~R~~g   21 (77)
T cd01396           6 RLPPGWKRELVPRKSG   21 (77)
T ss_pred             CCCCCCEEEEEEecCC
Confidence            3999999999999997

The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.

>KOG1891 consensus Proline binding protein WW45 [General function prediction only]

Probab=89.64  E-value=0.3  Score=49.70  Aligned_cols=41  Identities=37%  Similarity=0.661  Sum_probs=28.4

Q ss_pred             CCCCCCCCCeeEEEEEccCCcceeeE--------eeccCCCCCCCCceEEE
Q 008894            6 NSDELLPDGCRVEVRVRKNGKKDKII--------IEKDTPDGLPPGWTKEI   48 (549)
Q Consensus         6 ~s~~WLPdGW~vEvr~~knG~K~K~v--------iEr~~~~~LP~GWvkE~   48 (549)
                      ..|-=||+||-||--.  -|+||-|-        +-.+..++||+||.+=.
T Consensus        89 sedlPLPpgWav~~T~--~grkYYIDHn~~tTHW~HPlerEgLppGW~rv~  137 (271)
T KOG1891|consen   89 SEDLPLPPGWAVEFTT--EGRKYYIDHNNRTTHWVHPLEREGLPPGWKRVF  137 (271)
T ss_pred             cccCCCCCCcceeeEe--cCceeEeecCCCcccccChhhhccCCcchhhcc
Confidence            3455599999999765  47776651        22235689999997644

>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

Probab=86.66  E-value=0.69  Score=37.02  Aligned_cols=19  Identities=37%  Similarity=0.651  Sum_probs=17.2

Q ss_pred             CCCCCCCCeeEEEEEccCC
Q 008894            7 SDELLPDGCRVEVRVRKNG   25 (549)
Q Consensus         7 s~~WLPdGW~vEvr~~knG   25 (549)
                      ..+|||.||..|++.+++|
T Consensus         2 l~~P~p~GW~R~~~~r~~g   20 (62)
T cd00122           2 LRDPLPPGWKRELVIRKSG   20 (62)
T ss_pred             CCCCCCCCeEEEEEEcCCC
Confidence            4578999999999999997

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	549
2ky8_A	72	Methyl-CPG-binding domain protein 2; DNA binding d	1e-07
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	5e-06
1d9n_A	75	Methyl-CPG-binding protein MBD1; PCM1, methylation	1e-05
1ub1_A	133	MECP2, attachment region binding protein; chicken	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus} Length = 72

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 33 EKDTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG 85
           +     LPPGW KE  + K+G    + D YY  P SG  FRS     RY+   
Sbjct: 6  GRTDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYLGNA 58

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A Length = 97

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 40 LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84
          LP GWT+++K  K+GR   + D Y I+P  G  FRS  + + Y E 
Sbjct: 24 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIMYFEK 68

>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A* Length = 75

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 32 IEKDTPD--GLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVE 83
          + +D  D   L PGW +     K+G    R D YY  P +G   RS  +  RY+ 
Sbjct: 1  MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLG 54

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3 Length = 133

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 1  MGDRENSDELLPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGR-KVRR 59
          MG   +             + R++  +D+  +  D    LP GWT+++K  K+GR   + 
Sbjct: 1  MGHHHHHHAPAVPEASASPKQRRSIIRDRGPMYDDPT--LPEGWTRKLKQRKSGRSAGKY 58

Query: 60 DPYYIDPASGYIFRSMKDAVRYVE 83
          D Y I+P  G  FRS  + + Y E
Sbjct: 59 DVYLINP-QGKAFRSKVELIAYFE 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 25/135 (18%)

Query: 161 NLSEAKDSDKMDY--------RKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGK 212
           N+  AK  +  +         R     + LS      +     S      DE   + L K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVK-SLLLK 309

Query: 213 SMSRKKKVFDLPRRASK----RLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSG 268
            +    +  DLPR        RL+ +A      L T +  +    DK+  ++ +E+    
Sbjct: 310 YLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESS--- 362

Query: 269 SQVHLASQQPDQLEA 283
               L   +P +   
Sbjct: 363 ----LNVLEPAEYRK 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	549
2ky8_A	72	Methyl-CPG-binding domain protein 2; DNA binding d	99.27
1d9n_A	75	Methyl-CPG-binding protein MBD1; PCM1, methylation	99.26
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	99.22
3vxv_A	69	Methyl-CPG-binding domain protein 4; methyl CPG bi	99.2
1ub1_A	133	MECP2, attachment region binding protein; chicken	99.1
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	95.17
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	94.88
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	88.88
1d9n_A	75	Methyl-CPG-binding protein MBD1; PCM1, methylation	88.2
2ky8_A	72	Methyl-CPG-binding domain protein 2; DNA binding d	83.79
1ub1_A	133	MECP2, attachment region binding protein; chicken	81.23

>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}

Probab=99.27  E-value=1.9e-12  Score=105.59  Aligned_cols=48  Identities=42%  Similarity=0.749  Sum_probs=44.2

Q ss_pred             CCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhh
Q 008894           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (549)
Q Consensus        36 ~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeT   84 (549)
                      .+.+||+||.+|+++|++|. ..+.|.||++| +|++|||+++|.+||+.
T Consensus         9 ~~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP-~Gkr~RS~~ev~~YL~~   57 (72)
T 2ky8_A            9 DCPALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYLGN   57 (72)
T ss_dssp             ECSSSCTTCEEEEEECCSSTTTTCEEEEEECT-TCCEEESHHHHHHHHTT
T ss_pred             cCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCEeEcHHHHHHHHhc
Confidence            45699999999999999885 56899999999 99999999999999977

>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*

Probab=99.26  E-value=2.7e-12  Score=105.71  Aligned_cols=48  Identities=33%  Similarity=0.589  Sum_probs=43.6

Q ss_pred             CCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhh
Q 008894           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (549)
Q Consensus        36 ~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeT   84 (549)
                      .+..||+||.+|+++|++|. +.+.|.||++| +|++|||+++|.+||+.
T Consensus         7 ~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP-~Gkk~RS~~ev~ryL~~   55 (75)
T 1d9n_A            7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP   55 (75)
T ss_dssp             ECTTTCSSCEEEECSSSSSCTTCCCCEEEECS-SSCEECSTHHHHHHHCT
T ss_pred             cCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCeeecHHHHHHHhcc
Confidence            46789999999999999986 45899999999 99999999999999963

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A

Probab=99.22  E-value=5.8e-12  Score=108.46  Aligned_cols=48  Identities=40%  Similarity=0.743  Sum_probs=43.8

Q ss_pred             CCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhh
Q 008894           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (549)
Q Consensus        36 ~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeT   84 (549)
                      .+.+||+||.+|+++|++|. ..+.|.||++| +|++|||+.+|.+||+.
T Consensus        20 ~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~GkkfRSk~ev~ryL~~   68 (97)
T 3c2i_A           20 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIMYFEK   68 (97)
T ss_dssp             CCTTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEECSHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCEEECHHHHHHHHHH
Confidence            46689999999999999986 45899999999 89999999999999973

>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*

Probab=99.20  E-value=1.1e-11  Score=100.54  Aligned_cols=49  Identities=29%  Similarity=0.599  Sum_probs=43.0

Q ss_pred             CCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhhc
Q 008894           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG   85 (549)
Q Consensus        36 ~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeTG   85 (549)
                      .+..||.||.+|+++|++|. ..+.|.||+.|. |++|||+.+|.+||+.-
T Consensus         2 ~~~plp~GW~R~~~~R~~G~s~gk~DvyY~sP~-Gkk~RSk~ev~~yL~~~   51 (69)
T 3vxv_A            2 GHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQ-GLKFRSKRSLANYLLKN   51 (69)
T ss_dssp             --CCSCTTCEEEEEECCSSTTTTCEEEEEECTT-SCEECSHHHHHHHHHHH
T ss_pred             CCCcCCCCCEEEEEEeccCCCCCcceEEEEcCC-CCEeeCHHHHHHHHHhC
Confidence            35689999999999999986 568899999995 99999999999999863

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3

Probab=99.10  E-value=3.7e-11  Score=108.48  Aligned_cols=62  Identities=34%  Similarity=0.588  Sum_probs=51.5

Q ss_pred             EccCCcceeeE-eec--cCCCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHh
Q 008894           21 VRKNGKKDKII-IEK--DTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVE   83 (549)
Q Consensus        21 ~~knG~K~K~v-iEr--~~~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLe   83 (549)
                      .+..++..++| +|.  +.+.+||.||.+|+++|++|. ..+.|.||+.| +|++|||+.+|.+||+
T Consensus        16 ~~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP-~GKkfRSk~Ev~ryL~   81 (133)
T 1ub1_A           16 SASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE   81 (133)
T ss_dssp             CSCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECT-TSCEESSHHHHHHHHT
T ss_pred             ccCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECC-CCCeeeCHHHHHHHHH
Confidence            34456666666 344  357789999999999999985 56899999999 5999999999999997

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=95.17  E-value=0.02  Score=47.43  Aligned_cols=54  Identities=28%  Similarity=0.455  Sum_probs=35.6

Q ss_pred             CCCCCCCeeEEEEEccCCcceeeE-------eecc------------CCCCCCCCceEEEEEecCCCcccccccccCCCC
Q 008894            8 DELLPDGCRVEVRVRKNGKKDKII-------IEKD------------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPAS   68 (549)
Q Consensus         8 ~~WLPdGW~vEvr~~knG~K~K~v-------iEr~------------~~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvs   68 (549)
                      ..=||+||  |++++.+|+.|-|-       -|+.            ....||.||....  -..     ..+||+|..|
T Consensus         7 ~~~LP~gW--e~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~--~~~-----G~~Yy~n~~t   77 (90)
T 2kxq_A            7 PPDLPEGY--EQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRN--TAT-----GRVYFVDHNN   77 (90)
T ss_dssp             CCSCCSSC--EEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEE--CTT-----SCEEEEETTT
T ss_pred             CCCCCCCc--EEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEE--CCC-----CCEEEEECCC
Confidence            45699999  56666899988771       1211            1236999998765  222     2479999876


Q ss_pred             Cc
Q 008894           69 GY   70 (549)
Q Consensus        69 Gy   70 (549)
                      +.
T Consensus        78 ~~   79 (90)
T 2kxq_A           78 RT   79 (90)
T ss_dssp             TE
T ss_pred             Cc
Confidence            53

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=94.88  E-value=0.018  Score=47.54  Aligned_cols=56  Identities=23%  Similarity=0.518  Sum_probs=36.7

Q ss_pred             CCCCCCCCCeeEEEEEccCCcceee-------Eeecc----------CCCCCCCCceEEEEEecCCCcccccccccCCCC
Q 008894            6 NSDELLPDGCRVEVRVRKNGKKDKI-------IIEKD----------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPAS   68 (549)
Q Consensus         6 ~s~~WLPdGW~vEvr~~knG~K~K~-------viEr~----------~~~~LP~GWvkE~~~Rk~G~~ir~DkYY~DPvs   68 (549)
                      ....=||+||.+  ++..+|+.|-|       .-|..          ....||.||..-.  -..|     ..||+|..|
T Consensus         8 ~~~~~LP~gWe~--~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~--~~~G-----~~Yy~nh~t   78 (88)
T 1tk7_A            8 DALGPLPDGWEK--KIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRY--TAAG-----ERFFVDHNT   78 (88)
T ss_dssp             STTSSSSSSCCE--EEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEE--ETTT-----EEEEEETTT
T ss_pred             CccCCCCCCcEE--EECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEE--CCCC-----CEEEEECCC
Confidence            444569999954  55678998877       12221          1346999998765  2222     479999876


Q ss_pred             Cc
Q 008894           69 GY   70 (549)
Q Consensus        69 Gy   70 (549)
                      +.
T Consensus        79 ~~   80 (88)
T 1tk7_A           79 RR   80 (88)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A

Probab=88.88  E-value=0.42  Score=41.34  Aligned_cols=20  Identities=35%  Similarity=0.717  Sum_probs=17.0

Q ss_pred             CCCCCCCeeEEEEEccCCcc
Q 008894            8 DELLPDGCRVEVRVRKNGKK   27 (549)
Q Consensus         8 ~~WLPdGW~vEvr~~knG~K   27 (549)
                      +.|||+||..|+++|++|..
T Consensus        21 ~~~lP~GW~re~~~R~~G~s   40 (97)
T 3c2i_A           21 DPTLPEGWTRKLKQRKSGRS   40 (97)
T ss_dssp             CTTSCTTCEEEEEECCSSTT
T ss_pred             CCCCCCCCEEEEEEecCCCC
Confidence            45799999999999999643

>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*

Probab=88.20  E-value=0.25  Score=40.77  Aligned_cols=18  Identities=28%  Similarity=0.281  Sum_probs=16.2

Q ss_pred             CCCCCCCeeEEEEEccCC
Q 008894            8 DELLPDGCRVEVRVRKNG   25 (549)
Q Consensus         8 ~~WLPdGW~vEvr~~knG   25 (549)
                      .-+||+||..|+++|++|
T Consensus         8 ~p~LP~GW~Re~~~R~~g   25 (75)
T 1d9n_A            8 CPALGPGWKRREVFRKSG   25 (75)
T ss_dssp             CTTTCSSCEEEECSSSSS
T ss_pred             CCCCCCCCEEEEEEecCC
Confidence            458999999999999996

>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}

Probab=83.79  E-value=0.56  Score=38.21  Aligned_cols=17  Identities=41%  Similarity=0.636  Sum_probs=15.7

Q ss_pred             CCCCCeeEEEEEccCCc
Q 008894           10 LLPDGCRVEVRVRKNGK   26 (549)
Q Consensus        10 WLPdGW~vEvr~~knG~   26 (549)
                      +||+||..|+++|++|.
T Consensus        12 ~Lp~GW~R~~~~R~~g~   28 (72)
T 2ky8_A           12 ALPPGWKKEEVIRKSGL   28 (72)
T ss_dssp             SSCTTCEEEEEECCSST
T ss_pred             CCCCCCEEEEEEecCCC
Confidence            89999999999999873

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3

Probab=81.23  E-value=1.5  Score=39.94  Aligned_cols=19  Identities=37%  Similarity=0.753  Sum_probs=16.9

Q ss_pred             CCCCCCCeeEEEEEccCCc
Q 008894            8 DELLPDGCRVEVRVRKNGK   26 (549)
Q Consensus         8 ~~WLPdGW~vEvr~~knG~   26 (549)
                      +.|||+||..|+++|++|.
T Consensus        35 ~~~LP~GWkRe~~~RksG~   53 (133)
T 1ub1_A           35 DPTLPEGWTRKLKQRKSGR   53 (133)
T ss_dssp             CCCBTTBCEEEEEECCCSS
T ss_pred             CCCCCCCCEEEEEEecCCC
Confidence            5689999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	549
d1ig4a_	75	d.10.1.3 (A:) Methylation-dependent transcriptiona	1e-09
d1qk9a_	92	d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2	4e-08

>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methylation-dependent transcriptional repressor MBD1/PCM1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 33 EKDTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG 85
            D P  L PGW +     K+G    R D YY  P +G   RS  +  RY+   
Sbjct: 5  WLDCPA-LGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGPA 56

>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methyl-CpG-binding protein 2, MECP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 25 GKKDKIIIEKDTPDG---LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVR 80
           ++  II ++        LP GWT+++K  K+GR   + D Y I+P  G  FRS  + + 
Sbjct: 6  KQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIA 64

Query: 81 YVE 83
          Y E
Sbjct: 65 YFE 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	549
d1ig4a_	75	Methylation-dependent transcriptional repressor MB	99.33
d1qk9a_	92	Methyl-CpG-binding protein 2, MECP2 {Human (Homo s	99.21
d1ig4a_	75	Methylation-dependent transcriptional repressor MB	91.65
d1qk9a_	92	Methyl-CpG-binding protein 2, MECP2 {Human (Homo s	90.4

>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methylation-dependent transcriptional repressor MBD1/PCM1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.4e-13  Score=110.15  Aligned_cols=47  Identities=34%  Similarity=0.601  Sum_probs=42.5

Q ss_pred             CCCCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhh
Q 008894           37 PDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (549)
Q Consensus        37 ~~~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeT   84 (549)
                      +..||+||.+|+++|++|. +.+.|.||++| +|++||||++|.+||+.
T Consensus         8 ~p~LP~GW~re~~~Rk~g~~~gk~DvyY~sP-~Gkk~RS~~ev~~yL~~   55 (75)
T d1ig4a_           8 CPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP   55 (75)
T ss_dssp             CTTTCTTCEEEEECCCSSSSTTCCEEEEECS-SSCEECSHHHHHHHHCS
T ss_pred             CCCCCCCcEEEEEEEcCCCCCCceeEEEECC-CCCEEeCHHHHHHHhcc
Confidence            4579999999999999985 55899999999 89999999999999953

>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methyl-CpG-binding protein 2, MECP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.3e-12  Score=107.58  Aligned_cols=46  Identities=41%  Similarity=0.769  Sum_probs=42.2

Q ss_pred             CCCCCceEEEEEecCCC-cccccccccCCCCCccccchHHHHHHHhhc
Q 008894           39 GLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG   85 (549)
Q Consensus        39 ~LP~GWvkE~~~Rk~G~-~ir~DkYY~DPvsGykFRSkkdV~RYLeTG   85 (549)
                      .||+||.+|+++|++|. ..+.|.||+.| +|++|||++||.+||+..
T Consensus        23 ~Lp~GW~r~~~~R~~g~~~gk~Dvyy~sP-~Gkk~RS~~eV~~yL~~~   69 (92)
T d1qk9a_          23 TLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFEKV   69 (92)
T ss_dssp             CSSSSCEEEECCCCCSSSCSCCCEEEEET-TTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEecCCCCCceeeEEEECC-CCCeeecHHHHHHHHHHC
Confidence            59999999999999985 56899999999 799999999999999763

>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methylation-dependent transcriptional repressor MBD1/PCM1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.034  Score=44.00  Aligned_cols=26  Identities=23%  Similarity=0.196  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCCCCCeeEEEEEccCCc
Q 008894            1 MGDRENSDELLPDGCRVEVRVRKNGK   26 (549)
Q Consensus         1 m~~~e~s~~WLPdGW~vEvr~~knG~   26 (549)
                      |-+.++..-.||+||.+|+++|++|.
T Consensus         1 ~~e~~~~~p~LP~GW~re~~~Rk~g~   26 (75)
T d1ig4a_           1 MAEDWLDCPALGPGWKRREVFRKSGA   26 (75)
T ss_dssp             CCCCEEECTTTCTTCEEEEECCCSSS
T ss_pred             CCcccccCCCCCCCcEEEEEEEcCCC
Confidence            44554444479999999999999874

>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methyl-CpG-binding protein 2, MECP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.042  Score=44.77  Aligned_cols=19  Identities=37%  Similarity=0.791  Sum_probs=16.3

Q ss_pred             CCC-CCCCeeEEEEEccCCc
Q 008894            8 DEL-LPDGCRVEVRVRKNGK   26 (549)
Q Consensus         8 ~~W-LPdGW~vEvr~~knG~   26 (549)
                      ++| ||+||.+|+++|++|.
T Consensus        20 ~dp~Lp~GW~r~~~~R~~g~   39 (92)
T d1qk9a_          20 DDPTLPEGWTRKLKQRKSGR   39 (92)
T ss_dssp             SBCCSSSSCEEEECCCCCSS
T ss_pred             cCCCCCCCCEEEEEEecCCC
Confidence            445 8999999999999875