Citrus Sinensis ID: 008919

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL
cccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHccccccccccEEEEEcccEEEEEcccccEEEEccccccccccccHHHHHHHHHccHHHHHHHcccEEEEEEEcccccEEccHHHHHHHHHHHccccccccEEEEccccccccEEEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccEEEEEEEHHHHHHHccccccccccccEEccccccccccccccEEEccccEEEEEcHHHccccccccccccccccccccccEEEEcccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEccccccEEEEcccccccHHHHHccccccccccccEEEEEEcEEEEEEEEEEEEEEEEEEccccccEEccccccEEcccccccEEEEEcEEEEEccEEcccccccccccccEEEEEEEEEEEcccEEEEEcEEEEccEEEEEcccEEEEEEEccccEEEEccccccccccccccEEEEEEcccEEEEEEEEc
ccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHccccccccccEEEEEccccEEEEccccEEEEccccEEEccccccHHHHHHHHHccHHHHHHHcccEEEEEEEccccEEEEcccHHHHHHHcccccccccEEEEccccccHHcEEEEEEEccccccEEEEEEEEEEccccccccccccccccccccccccccEEEEEEcHHHHHHcccccccccccEEEEcccccEEEccccccccccccHHHHHHHcHHHHccccccccccccccccccEEEEEccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEccccccEEEEEccccHHHHHHHHHHccccEEccccEEEEEEEEEEEEEEEEccEEEEEEccccccccccccccEEEEEcccccEEEEEEEEEEEccEEccccccEEEEEcEEEEEEEEEEEEcccEEEEEEEEEEccEEEEEccccEEEEEEccccEEEEEccccHHHcccccEEEEEEEcccEEEEEEEEc
MLPYCGRTLLEGLIRDLQAREFLYFKLygkqcitpvAIMTSSAKNNHERITSLCERLRwfgrgqssfqlfeqplvpavdaedgqwlvmrpfapvckpgghgaIWKLAHDKGIFKwfhdngrkgatvRQVSNVVAATDLTLLALAGIglhhgkklgfasckrssgateGINVLIEKknldgkwayglscieytefdkfgitrgpfssnglqadfpantniLYVDLASaelvgssenerslpgmvlntkkpivymdnfgdthsvpggrleCTMQNIADNFLNTYSSrcykgveddldtfmVYNERRRVTSSAKKKRkradmslhqtpdgsfLDILRNAYDILCQChiklpeiegndkyiddgppyliLLHPALGLLWEVTRqkfkggsvskgseLQIEVAEFLWRNVQLDGSLIIVAENvmgstriadngESILQYGyrcgrcklnnvkvlnkgidwdcgdntywkHDVQWFEALKVILHGnaefeasdvtlqgnhvfevpdghklkitsgnsglvvqldpieqnmmdtgswhwnykingSHIVLELVEL
MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLiekknldgkwAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVgssenerslpgmvlNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVeddldtfmvynerrrvtssakkkrkradmslhqtpdgsfLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL
MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVaatdltllalaGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL
***YCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV**********GMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYN**************************SFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELV**
MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFD*************LQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRV******************PDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQK******SKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL
MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERR****************LHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL
MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTS***********SLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL
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MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query548 2.2.26 [Sep-21-2011]
Q5W915600 UDP-sugar pyrophospharyla N/A no 0.689 0.63 0.254 2e-09
Q0GZS3614 UDP-sugar pyrophospharyla N/A no 0.644 0.574 0.252 7e-09
Q09WE7600 UDP-sugar pyrophosphoryla no no 0.673 0.615 0.255 2e-08
Q9C5I1614 UDP-sugar pyrophosphoryla no no 0.653 0.583 0.236 3e-07
A2YGP6616 UDP-sugar pyrophosphoryla N/A no 0.709 0.631 0.221 3e-05
Q5Z8Y4616 UDP-sugar pyrophosphoryla no no 0.709 0.631 0.219 5e-05
Q6GEQ8395 Probable uridylyltransfer yes no 0.262 0.364 0.253 0.0002
Q7A0A0395 Probable uridylyltransfer yes no 0.262 0.364 0.240 0.0005
Q6G7E3395 Probable uridylyltransfer yes no 0.262 0.364 0.240 0.0005
Q7A4A4395 Probable uridylyltransfer yes no 0.262 0.364 0.240 0.0005
>sp|Q5W915|USP_PEA UDP-sugar pyrophospharylase OS=Pisum sativum GN=USP PE=1 SV=1 Back     alignment and function desciption
 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 169/424 (39%), Gaps = 46/424 (10%)

Query: 31  QCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRP 90
           Q   P  IMTS   + H R   L E   +FG   +   L +Q  V  ++  D + L + P
Sbjct: 171 QTHIPFVIMTSD--DTHGRTLDLLESNSYFGMQPTQVTLLKQEKVACLEDNDAR-LALDP 227

Query: 91  ---FAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLAL-AGI 146
              +    KP GHG +  L H  GI K +++ G K     Q +N      L   A+ + +
Sbjct: 228 QNRYRVQTKPHGHGDVHSLLHSSGILKVWYNAGLKWVLFFQDTN-----GLLFKAIPSAL 282

Query: 147 GLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF----GITRG 202
           G+   K+    S      A E I  +    + DG+    +  +EY + D      G   G
Sbjct: 283 GVSSTKQYHVNSLAVPRKAKEAIGGITRLTHSDGRSM--VINVEYNQLDPLLRASGYPDG 340

Query: 203 PFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSV 262
             +S    + FP N N L ++L      G    E +  G  +       Y D    T   
Sbjct: 341 DVNSETGYSPFPGNINQLILEL------GPYIEELAKTGGAIQEFVNPKYKDA-SKTSFK 393

Query: 263 PGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLH 322
              RLEC MQ+         SSR    V   ++T+  Y   +     A K  K      H
Sbjct: 394 SSTRLECMMQDYPKTL--PPSSRVGFTV---METWFAYAPVKNNAEDAAKVPK--GNPYH 446

Query: 323 QTPDGSFLDILRNAYDILCQCHIKL--PEIEG-NDKYIDDGPPYLILLHPALGLLWEVTR 379
               G  + I R    IL +   ++  P ++  N + ++  P   I   P  GL + + +
Sbjct: 447 SATSGE-MAIYRANSLILKKAGFQVADPVLQVINGQEVEVWP--RITWKPKWGLTFSLVK 503

Query: 380 QKFKGG-SVSKGSELQIEVAEFLWRNVQLDGSLIIVA-----ENVMGSTRIADNGESILQ 433
            K  G  S+S+ S L I+  +    N+ +DG+LI+ A      NV GS  + +NG ++  
Sbjct: 504 SKVSGNCSISQRSTLAIKGRKIFIENLSVDGALIVDAVDDAEVNVSGS--VQNNGWALEP 561

Query: 434 YGYR 437
             Y+
Sbjct: 562 VDYK 565
May function as the terminal enzyme of the myo-inositol oxidation (MIO) pathway. May also play a role in the salvage pathway for synthesis of nucleotide sugars.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6EC: 4
>sp|Q0GZS3|USP_CUCME UDP-sugar pyrophospharylase OS=Cucumis melo GN=USP PE=1 SV=1 Back     alignment and function description
>sp|Q09WE7|USP1_SOYBN UDP-sugar pyrophosphorylase 1 OS=Glycine max GN=USP1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5I1|USP_ARATH UDP-sugar pyrophosphorylase OS=Arabidopsis thaliana GN=USP PE=1 SV=1 Back     alignment and function description
>sp|A2YGP6|USP_ORYSI UDP-sugar pyrophosphorylase OS=Oryza sativa subsp. indica GN=USP PE=3 SV=2 Back     alignment and function description
>sp|Q5Z8Y4|USP_ORYSJ UDP-sugar pyrophosphorylase OS=Oryza sativa subsp. japonica GN=USP PE=2 SV=1 Back     alignment and function description
>sp|Q6GEQ8|URTF_STAAR Probable uridylyltransferase SAR2262 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2262 PE=3 SV=1 Back     alignment and function description
>sp|Q7A0A0|URTF_STAAW Probable uridylyltransferase MW2097 OS=Staphylococcus aureus (strain MW2) GN=MW2097 PE=3 SV=1 Back     alignment and function description
>sp|Q6G7E3|URTF_STAAS Probable uridylyltransferase SAS2072 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2072 PE=3 SV=1 Back     alignment and function description
>sp|Q7A4A4|URTF_STAAN Probable uridylyltransferase SA1974 OS=Staphylococcus aureus (strain N315) GN=SA1974 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query548
224109282 877 predicted protein [Populus trichocarpa] 0.998 0.623 0.837 0.0
225448507 860 PREDICTED: uncharacterized protein LOC10 0.998 0.636 0.824 0.0
255574832 884 conserved hypothetical protein [Ricinus 1.0 0.619 0.802 0.0
147794750 866 hypothetical protein VITISV_024684 [Viti 0.998 0.631 0.815 0.0
356568154 857 PREDICTED: uncharacterized protein LOC10 0.998 0.638 0.793 0.0
356539993 766 PREDICTED: uncharacterized protein LOC10 0.998 0.714 0.795 0.0
357461351 868 hypothetical protein MTR_3g071440 [Medic 0.996 0.629 0.776 0.0
18410414 883 UDP-glucose pyrophosphorylase 3 [Arabido 1.0 0.620 0.744 0.0
297820348 883 hypothetical protein ARALYDRAFT_486043 [ 1.0 0.620 0.740 0.0
7573499 871 putative protein [Arabidopsis thaliana] 0.978 0.615 0.728 0.0
>gi|224109282|ref|XP_002315147.1| predicted protein [Populus trichocarpa] gi|222864187|gb|EEF01318.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  974 bits (2517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/547 (83%), Positives = 502/547 (91%)

Query: 1   MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWF 60
           MLPYCGRTLLEGLIRDLQAREFLYFK+YGKQCITPVAIMTSSAKNNHE ITSLCERL WF
Sbjct: 330 MLPYCGRTLLEGLIRDLQAREFLYFKIYGKQCITPVAIMTSSAKNNHEHITSLCERLSWF 389

Query: 61  GRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNG 120
           GRGQSSFQLFEQPLVPA+ AEDGQWLV +PFAPVCKPGGHG IWKLA+DKGIF+WF+D+ 
Sbjct: 390 GRGQSSFQLFEQPLVPAISAEDGQWLVTKPFAPVCKPGGHGVIWKLAYDKGIFEWFYDHD 449

Query: 121 RKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDG 180
           RKGATVRQVSNVVAATDLTLLALAGIGL H KKLGFASCKR+SGATEGINVLIEKKNLDG
Sbjct: 450 RKGATVRQVSNVVAATDLTLLALAGIGLRHRKKLGFASCKRNSGATEGINVLIEKKNLDG 509

Query: 181 KWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLP 240
           +WAYGLSCIEYTEFDKF IT GP S+NGLQA+FPANTNILYVDL S ELV SS NE+SLP
Sbjct: 510 QWAYGLSCIEYTEFDKFEITGGPCSTNGLQAEFPANTNILYVDLPSLELVASSNNEKSLP 569

Query: 241 GMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVY 300
           GMVLNTKKPIVYMD++G+ HSV GGRLECTMQNIADNF NTY SRCYKGVED LDTF+VY
Sbjct: 570 GMVLNTKKPIVYMDHYGNCHSVYGGRLECTMQNIADNFTNTYLSRCYKGVEDKLDTFIVY 629

Query: 301 NERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDG 360
           NERRRVTSSAK+KR+ +D +LHQTPDG+ LDILRNAYD+L  C I+LP+IEGNDKY++ G
Sbjct: 630 NERRRVTSSAKRKRRHSDNTLHQTPDGALLDILRNAYDLLSHCDIELPQIEGNDKYVESG 689

Query: 361 PPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMG 420
           PP+LI LHPALG LWEVTRQKF GGS+SKGSELQIEVAEF WRNVQLDGSLII+AENVMG
Sbjct: 690 PPFLIYLHPALGPLWEVTRQKFNGGSISKGSELQIEVAEFSWRNVQLDGSLIIIAENVMG 749

Query: 421 STRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGN 480
           STRI  NGE ILQYG RCGRC+L NVKV+NKGI+W  GDN YWKHDVQ FEALKVILHGN
Sbjct: 750 STRIDPNGEPILQYGNRCGRCRLQNVKVVNKGINWSFGDNIYWKHDVQRFEALKVILHGN 809

Query: 481 AEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSH 540
           AEFEA +VT+QGN +FE+PDG+K+KITSG+SGL VQL+P+EQ +MD+GSWHWNYKI+GSH
Sbjct: 810 AEFEADNVTIQGNQIFEIPDGYKMKITSGDSGLQVQLNPLEQKIMDSGSWHWNYKIHGSH 869

Query: 541 IVLELVE 547
           I LELVE
Sbjct: 870 IQLELVE 876

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448507|ref|XP_002273020.1| PREDICTED: uncharacterized protein LOC100241552 [Vitis vinifera] gi|297736576|emb|CBI25447.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574832|ref|XP_002528323.1| conserved hypothetical protein [Ricinus communis] gi|223532278|gb|EEF34081.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147794750|emb|CAN60362.1| hypothetical protein VITISV_024684 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356568154|ref|XP_003552278.1| PREDICTED: uncharacterized protein LOC100788781 [Glycine max] Back     alignment and taxonomy information
>gi|356539993|ref|XP_003538476.1| PREDICTED: uncharacterized protein LOC100804343 [Glycine max] Back     alignment and taxonomy information
>gi|357461351|ref|XP_003600957.1| hypothetical protein MTR_3g071440 [Medicago truncatula] gi|355490005|gb|AES71208.1| hypothetical protein MTR_3g071440 [Medicago truncatula] Back     alignment and taxonomy information
>gi|18410414|ref|NP_567031.1| UDP-glucose pyrophosphorylase 3 [Arabidopsis thaliana] gi|332645948|gb|AEE79469.1| UDP-glucose pyrophosphorylase 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820348|ref|XP_002878057.1| hypothetical protein ARALYDRAFT_486043 [Arabidopsis lyrata subsp. lyrata] gi|297323895|gb|EFH54316.1| hypothetical protein ARALYDRAFT_486043 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7573499|emb|CAB87858.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query548
TAIR|locus:2082038883 UGP3 "UDP-glucose pyrophosphor 0.998 0.619 0.728 2.6e-228
TAIR|locus:2149574614 USP "UDP-sugar pyrophosphoryla 0.695 0.620 0.235 8.2e-07
TAIR|locus:2082038 UGP3 "UDP-glucose pyrophosphorylase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2203 (780.6 bits), Expect = 2.6e-228, P = 2.6e-228
 Identities = 400/549 (72%), Positives = 467/549 (85%)

Query:     1 MLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWF 60
             ML +CGRTLLEGLIRDLQAREFLYFKLYGKQC+TPVAIMTS+AKNNHE ++SLCERL+WF
Sbjct:   333 MLAHCGRTLLEGLIRDLQAREFLYFKLYGKQCVTPVAIMTSAAKNNHEHVSSLCERLKWF 392

Query:    61 GRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNG 120
             GRGQS+F+LFEQPLVPAV AEDGQW+V +PF PV KPGGHG IWKLA+DKG+F WF+D+G
Sbjct:   393 GRGQSNFRLFEQPLVPAVSAEDGQWIVSKPFVPVSKPGGHGVIWKLAYDKGVFNWFYDHG 452

Query:   121 RKGATVRQVSNVVXXXXXXXXXXXGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDG 180
             RKGATVRQVSNVV           GIGL + KKLGFASCKR++GATEGINVL+EKKN DG
Sbjct:   453 RKGATVRQVSNVVAATDVTLLALAGIGLRYNKKLGFASCKRNAGATEGINVLMEKKNFDG 512

Query:   181 KWAYGLSCIEYTEFDKFGIT-RGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSL 239
             KW YG+SCIEYTEFDKF I+ R P SSNGLQADFPANTNILYVDL SAEL+GSS N +SL
Sbjct:   513 KWEYGISCIEYTEFDKFDISNRSP-SSNGLQADFPANTNILYVDLHSAELIGSSSNAKSL 571

Query:   240 PGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMV 299
             P MVLNTKK I Y+D +GD HSV GGRLECTMQNIADNF N + SRC+  +ED LDT++V
Sbjct:   572 PNMVLNTKKRIEYLDQYGDYHSVMGGRLECTMQNIADNFFNKFPSRCHGSLEDKLDTYIV 631

Query:   300 YNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDD 359
             YNERR+VTSSAKKK+  A  +LHQTPDG+ LDILRN YD+L +C IKLP IE NDKY+D 
Sbjct:   632 YNERRKVTSSAKKKKPHASAALHQTPDGALLDILRNGYDLLTECDIKLPMIEANDKYVDS 691

Query:   360 GPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVM 419
              PPYLILLHPALG LWEV+RQKFKGGS+S  SELQ+E+AEF W NVQ+DGSLI+ AEN M
Sbjct:   692 PPPYLILLHPALGPLWEVSRQKFKGGSISSCSELQLEIAEFSWNNVQVDGSLIVTAENAM 751

Query:   420 GSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHG 479
             GST   DNGE ILQYG RCG+CKL+NV V+N+GIDW+   N YW++DV   E  K+ILHG
Sbjct:   752 GSTTPNDNGEPILQYGLRCGKCKLHNVNVVNRGIDWNSKSNVYWRNDVNRLETCKIILHG 811

Query:   480 NAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGS 539
             NAEFEAS+VT++G+HVFEVPDGHKLKITSGN+GL + L+ +++ +M+TGSW+WNY++NGS
Sbjct:   812 NAEFEASNVTIEGHHVFEVPDGHKLKITSGNAGLSINLEALKEEVMETGSWYWNYQLNGS 871

Query:   540 HIVLELVEL 548
             HI L+ VE+
Sbjct:   872 HIHLQQVEV 880
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0016036 "cellular response to phosphate starvation" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
TAIR|locus:2149574 USP "UDP-sugar pyrophosphorylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.1665.1
hypothetical protein (811 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_VI1540
UDP-sulfoquinovose synthase (EC-3.13.1.1) (483 aa)
   •  • 0.422
estExt_Genewise1_v1.C_LG_IX1928
hypothetical protein (432 aa)
   •  • 0.420

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
cd04193323 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphoryl 4e-11
cd06424315 cd06424, UGGPase, UGGPase catalyzes the synthesis 1e-10
PLN02830615 PLN02830, PLN02830, UDP-sugar pyrophosphorylase 3e-09
COG4284472 COG4284, COG4284, UDP-glucose pyrophosphorylase [C 4e-08
PTZ00339482 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyroph 0.003
>gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc Back     alignment and domain information 
 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 24/186 (12%)

Query: 14  IRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQP 73
           I  LQ    L  +  GK+   P  IMTS  +  HE      +   +FG        F+Q 
Sbjct: 56  ILKLQE---LAGEASGKKVPIPWYIMTS--EATHEETRKFFKENNYFGLDPEQVHFFQQG 110

Query: 74  LVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 133
           ++P VD  DG+ L+         P G+G ++K     GI +     G K   V  V N+ 
Sbjct: 111 MLPCVD-FDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI- 168

Query: 134 AATDLTLLALAG---IGLHHGKKLGFAS-CKRSSGATEGINVLIEKKNLDGKWAYGLSCI 189
                 L+ +A    IG    K     +   R    TE + V++     DGK       +
Sbjct: 169 ------LVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV---DGKPQV----V 215

Query: 190 EYTEFD 195
           EY+E  
Sbjct: 216 EYSEIS 221

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. Length = 323
>gnl|CDD|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose Back     alignment and domain information
>gnl|CDD|215444 PLN02830, PLN02830, UDP-sugar pyrophosphorylase Back     alignment and domain information
>gnl|CDD|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 548
PLN02830615 UDP-sugar pyrophosphorylase 100.0
cd06424315 UGGPase UGGPase catalyzes the synthesis of UDP-Glu 100.0
PLN02474469 UTP--glucose-1-phosphate uridylyltransferase 100.0
PLN02435493 probable UDP-N-acetylglucosamine pyrophosphorylase 100.0
PTZ00339482 UDP-N-acetylglucosamine pyrophosphorylase; Provisi 100.0
PF01704420 UDPGP: UTP--glucose-1-phosphate uridylyltransferas 100.0
cd04193323 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala 100.0
cd00897300 UGPase_euk Eukaryotic UGPase catalyses the synthes 100.0
KOG2638498 consensus UDP-glucose pyrophosphorylase [Carbohydr 100.0
KOG2388477 consensus UDP-N-acetylglucosamine pyrophosphorylas 100.0
COG4284472 UDP-glucose pyrophosphorylase [Carbohydrate transp 100.0
cd04180266 UGPase_euk_like Eukaryotic UGPase-like includes UD 100.0
COG1207460 GlmU N-acetylglucosamine-1-phosphate uridyltransfe 93.2
PRK05293380 glgC glucose-1-phosphate adenylyltransferase; Prov 88.97
TIGR02092369 glgD glucose-1-phosphate adenylyltransferase, GlgD 87.05
cd04181217 NTP_transferase NTP_transferases catalyze the tran 85.53
cd06915223 NTP_transferase_WcbM_like WcbM_like is a subfamily 83.88
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 81.54
>PLN02830 UDP-sugar pyrophosphorylase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-97  Score=820.71  Aligned_cols=439  Identities=23%  Similarity=0.316  Sum_probs=394.9

Q ss_pred             CCCC---CCCchhHHHHHHHHHHHHHhHHhcC-CcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCcee
Q 008919            1 MLPY---CGRTLLEGLIRDLQAREFLYFKLYG-KQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVP   76 (548)
Q Consensus         1 ~Lpv---sgksllql~~e~I~~lq~la~~~~g-~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP   76 (548)
                      +||+   +|+||||++++||+++|++|.++.+ ..+.||||||||+  +||++|++||++|+|||++++||+||+|+++|
T Consensus       150 ~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~--~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P  227 (615)
T PLN02830        150 ALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSD--DTHARTLKLLERNDYFGMDPDQVTLLKQEKVA  227 (615)
T ss_pred             ceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCc--chhHHHHHHHHHCCccCCCccceEEEEcCcce
Confidence            4665   6999999999999999999987553 5589999999999  79999999999999999999999999999999


Q ss_pred             EEecCCCeeeeec--CCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCc
Q 008919           77 AVDAEDGQWLVMR--PFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKK  153 (548)
Q Consensus        77 ~l~~~dg~~~l~~--~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~  153 (548)
                      |+++++|++++++  +++++|+||||||||+||++||+|++|+++|+||+|||||||+|+++ ||.   |+|+++.++++
T Consensus       228 ~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~---flG~~~~~~~d  304 (615)
T PLN02830        228 CLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPA---ALGVSATKGFD  304 (615)
T ss_pred             eEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHH---HhHHHHhcCCc
Confidence            9998889999986  88999999999999999999999999999999999999999999998 885   48999999999


Q ss_pred             eeEEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccc----cCCCCCCCCCcccccccceeeEEEeHHHHHh
Q 008919          154 LGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG----ITRGPFSSNGLQADFPANTNILYVDLASAEL  229 (548)
Q Consensus       154 ~~~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~----~~~~~~~~g~l~s~f~~Ninnl~~~L~~l~~  229 (548)
                      |++++|+|  .+.|++|++|+.++.||++  +++||||+|++++.    .++++..+++++|.|||||||||++|++|++
T Consensus       305 ~~~kvv~K--~~~E~vGvi~~~~~~dG~~--l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~  380 (615)
T PLN02830        305 MNSLAVPR--KAKEAIGAIAKLTHKDGRE--MVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNINQLILKLGPYVK  380 (615)
T ss_pred             eEEEEEEC--CCCcccceEEEEecCCCCe--eeEEEeecccCHHHHhccCCCcccccccccccCCCCceeeEeeHHHHHH
Confidence            99998655  4678999999855678873  56899999999883    3556777788899999999999999999999


Q ss_pred             hhccccCCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcch
Q 008919          230 VGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSS  309 (548)
Q Consensus       230 ~l~~~~~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~  309 (548)
                      +++. +.+.+|+++ |||    |+|.+ .+.++.++|||||||||++++..     .++|||++++||.+|+||||++++
T Consensus       381 ~l~~-~~~~lp~iv-NpK----~~d~~-~~v~q~~trle~~mq~f~~~~~~-----~~~vg~~v~~~~~~f~PVKn~~s~  448 (615)
T PLN02830        381 ELAK-TGGVIEEFV-NPK----YKDAT-KTAFKSPTRLECMMQDYPKTLPP-----SAKVGFTVFDNWLAYSPVKNSPAD  448 (615)
T ss_pred             HHHh-CCCccceec-cCc----ccCCC-CceeecchHHHHHHHHHhhhcCc-----ccccCceecCchheeccccCChHH
Confidence            9986 788999865 998    89877 46899999999999999999952     357899999999999999999999


Q ss_pred             hhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCCcc----CCCccccCCCCeEEEeCCCccccHHHHhccc-CC
Q 008919          310 AKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE----GNDKYIDDGPPYLILLHPALGLLWEVTRQKF-KG  384 (548)
Q Consensus       310 a~~k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~~~----~~~~~~~~~P~~~v~l~p~~~~~~~~~~~k~-~~  384 (548)
                      |++|++++ + +++||+|+++|+|++++++|+.+|+.+.++.    .++++++.+|+  |.|+|+|+++++++++|| ++
T Consensus       449 a~~k~~~~-~-~~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~~~~~~~~~~~P~--I~L~p~f~~~~~~~~~k~~~~  524 (615)
T PLN02830        449 GAAKVPEG-N-PTHSATSGEMAIYGANCLILRKAGADVEEPVEDVVFNGIEVEVGPR--IVLKPAFALTFSELKKKVAPG  524 (615)
T ss_pred             hhhhcccC-C-CccCcchhhHHHHHHHHHHHHhcCCccccCccccccCCcccCCCCe--EEECchhhhHHHHHHHHhcCC
Confidence            99998876 4 5669999999999999999999888876543    56888888996  999999999999999999 76


Q ss_pred             -CccCCCcEEEEEeceEEEeceEEEEEEEEEecCCCCCceecCCCcceeeccceeceEEEeeeEEeeCcEeeeeCCC---
Q 008919          385 -GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDN---  460 (548)
Q Consensus       385 -~si~~~s~L~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~V~N~G~~~~~~~~---  460 (548)
                       +||+++|+|+|+|+++||+||+|||+|+|.|..  |+                  +|+|+|++|+|+||+|++++.   
T Consensus       525 ~~si~~~s~L~v~G~~~~~~~v~LdG~viI~a~~--~~------------------~~~i~g~~v~N~g~~~~~~~~~~~  584 (615)
T PLN02830        525 SVKISQRSTLVLEGADIVIENLSLDGALVVRAVP--GA------------------EVTVGGLRVKNKGWTWEPVDKGTS  584 (615)
T ss_pred             CCcccCCCeEEEEeeeEEecCeEEEEEEEEEcCC--CC------------------eEEecCeEEecCCcEEEecCCCCC
Confidence             799999999999999999999999999999987  54                  789999999999999999653   


Q ss_pred             -----ccccccceeeeEEEEEEeccceeE
Q 008919          461 -----TYWKHDVQWFEALKVILHGNAEFE  484 (548)
Q Consensus       461 -----~~w~~~~~r~e~~~i~~~g~~~f~  484 (548)
                           .+....+.|.|..++++.-+|.|.
T Consensus       585 ~~~~~~irg~~~~~~e~~~~~~~~~g~~~  613 (615)
T PLN02830        585 APEEIRIRGFVIKKVETAELVFDKPGKYT  613 (615)
T ss_pred             cchhhhhcceeEeeeeeEEEEecCCCcee
Confidence                 377889999999999999888874

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose Back     alignment and domain information
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase Back     alignment and domain information
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional Back     alignment and domain information
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 Back     alignment and domain information
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc Back     alignment and domain information
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose Back     alignment and domain information
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes Back     alignment and domain information
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit Back     alignment and domain information
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars Back     alignment and domain information
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
3oc9_A405 Crystal Structure Of Putative Udp-N-Acetylglucosami 6e-06
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine Pyrophosphorylase From Entamoeba Histolytica Length = 405 Back     alignment and structure 
Iteration: 1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 48  ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLA 107
           E I +  +  ++FG        F Q ++P VD  +G+ L  +   P   P GHG ++K  
Sbjct: 106 EEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDF-NGKILYEKKDKPYMAPNGHGGLFKAL 164
Query: 108 HDKGIFKWFHDNGRKGATVRQVSNVV 133
            D GI ++ ++ G K +    V N++
Sbjct: 165 KDNGILEFMNEKGIKYSVAHNVDNIL 190

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
3ogz_A630 UDP-sugar pyrophosphorylase; LEFT handed beta heli 2e-47
1jv1_A505 Glcnac1P uridyltransferase isoform 1: AGX1; nucleo 5e-39
2yqc_A486 UDP-N-acetylglucosamine pyrophosphorylase; uridine 1e-35
2oeg_A505 UTP-glucose-1-phosphate uridylyltransferase 2, put 5e-29
3gue_A484 UTP-glucose-1-phosphate uridylyltransferase 2; pho 1e-28
3oc9_A405 UDP-N-acetylglucosamine pyrophosphorylase; structu 2e-28
2i5k_A488 UTP--glucose-1-phosphate uridylyltransferase; LEFT 3e-22
3r3i_A528 UTP--glucose-1-phosphate uridylyltransferase; ross 4e-21
2icy_A469 Probable UTP-glucose-1-phosphate uridylyltransfera 2e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Length = 630 Back     alignment and structure
 Score =  173 bits (440), Expect = 2e-47
 Identities = 79/503 (15%), Positives = 137/503 (27%), Gaps = 84/503 (16%)

Query: 6   GRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQS 65
             T L   +R  Q       ++ GK+   P  IMTS   + H+R   L   LR       
Sbjct: 144 NTTYLAYYLRWAQ-------RVGGKE--VPFVIMTSD--DTHDRTLQL---LRELQLEVP 189

Query: 66  SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKG-------------- 111
           +  + +Q  V           +      + KP GHG +  L ++                
Sbjct: 190 NLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTA 249

Query: 112 ----IFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATE 167
               +   +   G +     Q +N  A   +       +   H   + F    R     E
Sbjct: 250 TAQPLVNDWLAAGYESIVFIQDTNAGATITIP--ISLALSAEHSLDMNFTCIPRV--PKE 305

Query: 168 GINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG-----PFSSNGLQADFPANTNILYV 222
            I +L   K   G   + ++ +EY  F +             S     + FP + N L  
Sbjct: 306 PIGLLCRTKKNSGD-PWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVF 364

Query: 223 DLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTY 282
            L+S        +       ++       Y D           R+E  MQ+IA  F    
Sbjct: 365 KLSSY------VDRLRESHGIVPEFINPKYSDE-TRRSFKKPARIESLMQDIALLF---- 413

Query: 283 SSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQ 342
           S   Y+      + F     +    S  +     A  +                   L  
Sbjct: 414 SEDDYRVGGTVFERFSYQPVK---NSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKA 470

Query: 343 CHIKL-----PEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFK-----GGSVSKGSE 392
             + L     PE+             +I+L         +              + + S 
Sbjct: 471 IGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCASSGSLDDLARVFPTPEKVHIDQHST 530

Query: 393 LQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKG 452
           L +E    +  +++L G+L I                             + N  V N G
Sbjct: 531 LIVE-GRVIIESLELYGALTIRGPT-----------------DSMALPHVVRNAVVRNAG 572

Query: 453 IDWDCGDNTYWKHDVQWFEALKV 475
                  +     D +  E  ++
Sbjct: 573 WSVHAILSLCAGRDSRLSEVDRI 595
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Length = 505 Back     alignment and structure
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Length = 486 Back     alignment and structure
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Length = 505 Back     alignment and structure
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Length = 484 Back     alignment and structure
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Length = 405 Back     alignment and structure
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Length = 488 Back     alignment and structure
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Length = 528 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query548
3ogz_A630 UDP-sugar pyrophosphorylase; LEFT handed beta heli 100.0
3gue_A484 UTP-glucose-1-phosphate uridylyltransferase 2; pho 100.0
3r3i_A528 UTP--glucose-1-phosphate uridylyltransferase; ross 100.0
2oeg_A505 UTP-glucose-1-phosphate uridylyltransferase 2, put 100.0
3oc9_A405 UDP-N-acetylglucosamine pyrophosphorylase; structu 100.0
2yqc_A486 UDP-N-acetylglucosamine pyrophosphorylase; uridine 100.0
1jv1_A505 Glcnac1P uridyltransferase isoform 1: AGX1; nucleo 100.0
2i5k_A488 UTP--glucose-1-phosphate uridylyltransferase; LEFT 100.0
2icy_A469 Probable UTP-glucose-1-phosphate uridylyltransfera 100.0
3st8_A501 Bifunctional protein GLMU; acetyltransferase, pyro 93.96
3oam_A252 3-deoxy-manno-octulosonate cytidylyltransferase; c 86.62
3brk_X420 Glucose-1-phosphate adenylyltransferase; ADP-gluco 83.36
4ecm_A269 Glucose-1-phosphate thymidylyltransferase; HET: DA 82.11
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Back     alignment and structure
Probab=100.00  E-value=9.8e-90  Score=754.37  Aligned_cols=432  Identities=19%  Similarity=0.162  Sum_probs=366.1

Q ss_pred             CCCC---CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeE
Q 008919            1 MLPY---CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPA   77 (548)
Q Consensus         1 ~Lpv---sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~   77 (548)
                      +||+   +|+||||+++|||+   +    ++|  +.||||||||+  +||++|++||++   ||++++||+||+|+++||
T Consensus       136 ~lpv~~~s~ks~lql~~e~i~---~----~~g--~~iPl~IMTS~--~T~~~T~~~~~~---fgl~~~~V~~F~Q~~~P~  201 (630)
T 3ogz_A          136 SLPVETATNTTYLAYYLRWAQ---R----VGG--KEVPFVIMTSD--DTHDRTLQLLRE---LQLEVPNLHVLKQGQVFC  201 (630)
T ss_dssp             GSBSCTTTCCBHHHHHHHHHH---H----HHC--TTCCEEEEECT--TTHHHHHHHHHH---TTCCCTTEEEEECCCEEC
T ss_pred             cceecCCCCCcHHHHHHHHHH---H----HhC--CCCcEEEEecc--cchHHHHHHHHH---hCCCcccEEEEEcCCEEE
Confidence            5788   59999999999999   2    567  89999999999  799999999999   999999999999999999


Q ss_pred             EecCCCeeeeecCCCCccccCCCchHhHHHHhcC------------------chhHHHhCCceEEEEEecCCccccc-ch
Q 008919           78 VDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKG------------------IFKWFHDNGRKGATVRQVSNVVAAT-DL  138 (548)
Q Consensus        78 l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sG------------------lld~l~~~Gikyi~v~~vDN~La~~-Dp  138 (548)
                      +++++|+++++++++++|+|+||||||.+|+++|                  +|++|+++|++|+||+||||+|+++ ||
T Consensus       202 i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vDN~L~~~~DP  281 (630)
T 3ogz_A          202 FADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIP  281 (630)
T ss_dssp             BSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEECTTBTTHHHHHH
T ss_pred             EecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccCCccccccCH
Confidence            9878899999999999999999999999999999                  9999999999999999999999887 99


Q ss_pred             hHHHHhhhhhhcCCceeEEEEeccCCCCccceEEEEEecCCCceecceeEEEecccCcccc----CCCC-CCCCCccccc
Q 008919          139 TLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGI----TRGP-FSSNGLQADF  213 (548)
Q Consensus       139 ~il~~lG~~~~~~~~~~~~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~----~~~~-~~~g~l~s~f  213 (548)
                      .|   +|+++.++++|++++|+|  .+.|++|++|+.++.||++ ++++||||||++++..    ++++ +.+.+.++.|
T Consensus       282 ~~---lG~~~~~~~d~~~kvv~r--~p~E~vG~l~~~~~~dGk~-~~v~vVEYsei~~~~~~~~~~~g~~~~~~~~~~~f  355 (630)
T 3ogz_A          282 IS---LALSAEHSLDMNFTCIPR--VPKEPIGLLCRTKKNSGDP-WLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPF  355 (630)
T ss_dssp             HH---HHHHHHTTCSEEEEEECC--CSSCSSCEEEEEESSTTSC-CEEEEECHHHHHHHHHHC------------CCCSS
T ss_pred             HH---hHHHHhcCCCEEEEEEEC--CCCcceeeEEEEecCCCce-eeeeEEEeccCCHhHhhccCCCccccccccccccc
Confidence            66   899999999999998665  3678889999855678981 1347899999999852    1233 3344558889


Q ss_pred             ccceeeEEEeHHHHHhhhccccCCCccccccccCCCceeecCCCCccccCceeecccchhhhhhhhcccccccccceeee
Q 008919          214 PANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDD  293 (548)
Q Consensus       214 ~~Ninnl~~~L~~l~~~l~~~~~~~lp~~ian~KKkipy~D~~g~~~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~  293 (548)
                      |+|||||||+|++|.+.+.. ..+.+|.++ |||    |+|+++ +.+++++||||||||++++|+.    ...++++++
T Consensus       356 ~GNtNnl~~~L~a~~~~l~~-~~~~ip~~v-NpK----~~d~~~-~~~~~~~qLEt~m~d~~~~F~~----~~~~v~~~~  424 (630)
T 3ogz_A          356 PGSVNTLVFKLSSYVDRLRE-SHGIVPEFI-NPK----YSDETR-RSFKKPARIESLMQDIALLFSE----DDYRVGGTV  424 (630)
T ss_dssp             CEEEEEEEEEHHHHHHHHHH-HTTCCCCEE-CCC----BSSSSS-CCBSSCBCEECCGGGGGGGCCT----TTCCEEEEE
T ss_pred             cccceeeeEEHHHHHHHHHh-ccCccceec-CCc----ccCCcc-cccCcchhhhhHHHHHHHhccc----cCcceeEEE
Confidence            99999999999999988875 578899777 987    999884 6789999999999999999962    223678999


Q ss_pred             cCccccccccCCCcchhhhhhcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCC---cc---CCCc-cccCCCCeEEE
Q 008919          294 LDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPE---IE---GNDK-YIDDGPPYLIL  366 (548)
Q Consensus       294 ~~R~~~FsPvKN~~~~a~~k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~---~~---~~~~-~~~~~P~~~v~  366 (548)
                      ++| .+|+||||+..+|++|.+++  .+++||+|++.|+|+++++||++||++++.   ++   +++. +++.+|+  |+
T Consensus       425 V~R-~~F~PVKn~~~~a~~k~~~g--~~~~sp~t~~~dly~~~~~~L~~aG~~v~~~~~~~~~~~~~~~~~~~~P~--i~  499 (630)
T 3ogz_A          425 FER-FSYQPVKNSLEEAAGLVAQG--NGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPI--IV  499 (630)
T ss_dssp             CCG-GGCCBCCBCHHHHHHHHHTT--CCCCBHHHHHHHHHHHHHHHHHHTTCCCCCCCSCSEEETTTTEEECCCSE--EE
T ss_pred             ECC-CeeecccCChhHhhhhhccC--CCcCChHHHHHHHHHHHHHHHHHcCceecccccchhhhhcCccccCCCCE--EE
Confidence            999 89999999999998887765  357899999999999999999999999984   32   5677 8889995  99


Q ss_pred             eCCCcccc--HHHHhcccCC--C-ccCCCcEEEEEeceEEEeceEEEEEEEEEecCCCCCceecCCCcceeeccceeceE
Q 008919          367 LHPALGLL--WEVTRQKFKG--G-SVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRC  441 (548)
Q Consensus       367 l~p~~~~~--~~~~~~k~~~--~-si~~~s~L~veG~~~~~~~v~ldG~l~I~a~~~~g~~~~~~~g~~i~~~~~~~~~~  441 (548)
                      |+|+|+++  ++++++||++  + +|+++|+|+|+|+ ++++||+|||+|+|.|++  |+..     .+         .|
T Consensus       500 l~p~~~~~~~~~~~~~k~~~~~~~~i~~~S~L~veg~-v~~~~l~LdG~lvI~a~~--~~~~-----~~---------~v  562 (630)
T 3ogz_A          500 LDTVCASSGSLDDLARVFPTPEKVHIDQHSTLIVEGR-VIIESLELYGALTIRGPT--DSMA-----LP---------HV  562 (630)
T ss_dssp             ECHHHHTTCCHHHHHHHCSSGGGEEECTTCEEEEESS-EEESCEEEESEEEEECCS--STTS-----CC---------EE
T ss_pred             EeccccccccHHHHHHHhCCCCCceecCCcEEEEEEE-EEEEEEEEeeEEEEEcCC--CCcc-----Cc---------eE
Confidence            99999999  9999999999  5 8999999999999 999999999999999988  5522     22         27


Q ss_pred             EEeeeEEeeCcEeeeeC----CC---------ccccccceeeeEEEEEEeccceeEee
Q 008919          442 KLNNVKVLNKGIDWDCG----DN---------TYWKHDVQWFEALKVILHGNAEFEAS  486 (548)
Q Consensus       442 ~~~~~~V~N~G~~~~~~----~~---------~~w~~~~~r~e~~~i~~~g~~~f~a~  486 (548)
                      ++++ +|+|+||.|.++    +.         .+....+.|.|.+++.+.-++|++|.
T Consensus       563 ~~~~-~v~n~g~~~~~~~~~~~~~~~~~~~~~~irg~~~~~~e~~~~~~~~~~~~~~~  619 (630)
T 3ogz_A          563 VRNA-VVRNAGWSVHAILSLCAGRDSRLSEVDRIRGFVLKKTAMAVMDCNTKGESEAG  619 (630)
T ss_dssp             ECSE-EEECCCCEEEECCTTC----CCCCHHHHTTTEEEECCCCEEECC---------
T ss_pred             Eecc-eEecCCcEEEEcccccccccCCCChhhcccceeEEeeeEEEEEecCCCccccC
Confidence            8888 999999999999    31         27778999999999999999999874
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Back     alignment and structure
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Back     alignment and structure
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Back     alignment and structure
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Back     alignment and structure
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Back     alignment and structure
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Back     alignment and structure
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Back     alignment and structure
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 Back     alignment and structure
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Back     alignment and structure
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 548
d1jv1a_501 c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphor 5e-35
d2icya2378 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 2e-17
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Length = 501 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

 Score =  135 bits (342), Expect = 5e-35
 Identities = 57/283 (20%), Positives = 102/283 (36%), Gaps = 21/283 (7%)

Query: 3   PYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGR 62
               +TL +     +   + +  K YG +CI P  IMTS      E       + ++FG 
Sbjct: 129 LPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTS--GRTMESTKEFFTKHKYFGL 186

Query: 63  GQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK 122
            + +   F+Q ++PA+   DG+ ++         P G+G +++    + I +     G  
Sbjct: 187 KKENVIFFQQGMLPAMS-FDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIW 245

Query: 123 GATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKW 182
              V  V N++           G  +  G   G    ++++  TE + V+      DG  
Sbjct: 246 SIHVYCVDNILVKV--ADPRFIGFCIQKGADCGAKVVEKTN-PTEPVGVVCRV---DGV- 298

Query: 183 AYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGM 242
                 +EY+E      T    SS+G       N    +  +     V  +  E  L   
Sbjct: 299 ---YQVVEYSEISLA--TAQKRSSDGRLLFNAGNIANHFFTVPFLRDV-VNVYEPQLQHH 352

Query: 243 VLNTKKPIVYMDNFGDTH---SVPGGRLECTMQNIADNFLNTY 282
           V   +K I Y+D  G         G ++E  + +I        
Sbjct: 353 V--AQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFV 393
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query548
d1jv1a_501 UDP-N-acetylglucosamine pyrophosphorylase {Human ( 100.0
d2icya2378 UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c 100.0
d2icya183 UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c 99.28
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=100.00  E-value=8.2e-73  Score=611.54  Aligned_cols=311  Identities=20%  Similarity=0.255  Sum_probs=280.0

Q ss_pred             CCCC---CCCchhHHHHHHHHHHHHHhHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeE
Q 008919            1 MLPY---CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPA   77 (548)
Q Consensus         1 ~Lpv---sgksllql~~e~I~~lq~la~~~~g~~~~IPl~IMTS~~~~Th~~T~~~le~~~~FGl~~~qV~~F~Q~~vP~   77 (548)
                      |+||   +|+||||++++||++++++|.+++|..+.||||||||+  +||++|++||++|+|||++++||+||+|+++||
T Consensus       124 ~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~--~T~~~t~~~l~~~~~FGl~~~~v~~f~Q~~~P~  201 (501)
T d1jv1a_         124 MYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSG--RTMESTKEFFTKHKYFGLKKENVIFFQQGMLPA  201 (501)
T ss_dssp             GCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECT--TTHHHHHHHHHHTGGGGSCGGGEEEEECCEEEC
T ss_pred             eeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECCh--hHhHHHHHHHHhccccCCCcCceEEEEecCcce
Confidence            4565   79999999999999999999988887799999999999  699999999999999999999999999999999


Q ss_pred             EecCCCeeeeecCCCCccccCCCchHhHHHHhcCchhHHHhCCceEEEEEecCCccccc-chhHHHHhhhhhhcCCceeE
Q 008919           78 VDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGF  156 (548)
Q Consensus        78 l~~~dg~~~l~~~~~l~~~P~GHGdIy~aL~~sGlld~l~~~Gikyi~v~~vDN~La~~-Dp~il~~lG~~~~~~~~~~~  156 (548)
                      ++ .+|+++++++++++|+|+||||||.+|++||+|++|+++|++|++|+||||+|+++ ||.|   +|+++..++++++
T Consensus       202 ~~-~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~Dp~~---lG~~~~~~~~~~~  277 (501)
T d1jv1a_         202 MS-FDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRF---IGFCIQKGADCGA  277 (501)
T ss_dssp             EE-TTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHH---HHHHHHTTCSEEE
T ss_pred             EC-CCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccccccCHHH---HHHHHhcccceeE
Confidence            98 67999999999999999999999999999999999999999999999999999886 9966   8999999999999


Q ss_pred             EEEeccCCCCccceEEEEEecCCCceecceeEEEecccCccccCCCCCCCCCccccccc-ceeeEEEeHHHHHhhhcccc
Q 008919          157 ASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSEN  235 (548)
Q Consensus       157 ~~v~rK~~~~e~vGvL~~~~~~dG~~~~~~~vVEYsel~~~~~~~~~~~~g~l~s~f~~-Ninnl~~~L~~l~~~l~~~~  235 (548)
                      ++ ++|+.++|++|+||+   .||+    +++|||+|+|++. .+...++|.+  .|++ |||||||+++||+++++. .
T Consensus       278 kv-v~k~~~~e~~G~l~~---~dg~----~~vvEysel~~~~-~~~~~~~g~l--~f~~~Ni~~~~fsl~fl~~~~~~-~  345 (501)
T d1jv1a_         278 KV-VEKTNPTEPVGVVCR---VDGV----YQVVEYSEISLAT-AQKRSSDGRL--LFNAGNIANHFFTVPFLRDVVNV-Y  345 (501)
T ss_dssp             EE-EECCSTTCSCCEEEE---ETTE----EEEECGGGSCHHH-HHCBCTTSSB--SSCEEEEEEEEEEHHHHHHHHHT-T
T ss_pred             EE-EEcCCCCcccceEEE---ECCe----EEEEEeccCCHHH-HhhccCCCcc--cccccceeheeeEHHHHHHHHHh-c
Confidence            97 566679999999998   7899    9999999999986 5556667776  8976 999999999999999975 4


Q ss_pred             CCCccccccccCCCceeecCCCCc---cccCceeecccchhhhhhhhcccccccccceeeecCccccccccCCCcchhhh
Q 008919          236 ERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKK  312 (548)
Q Consensus       236 ~~~lp~~ian~KKkipy~D~~g~~---~~~~~~rLE~~Mqd~~~~f~~~~~~~~~~~~~~~~~R~~~FsPvKN~~~~a~~  312 (548)
                      ...||+|++.  |||||+|.+|..   ..++++|||+||||++..|        .++++++++|+.+||||||+++..  
T Consensus       346 ~~~l~~hva~--Kki~~~d~~~~~~~p~~~n~iklE~fifD~~~~~--------~~~~~~~V~R~~eFaPvKN~~~~~--  413 (501)
T d1jv1a_         346 EPQLQHHVAQ--KKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFA--------KKFVVYEVLREDEFSPLKNADSQN--  413 (501)
T ss_dssp             GGGCCCEEEE--ECCCEECTTSCEECCSSCCEEEEECCGGGGGGGC--------SSEEEEEECHHHHCCBCCSCTTSS--
T ss_pred             ccCCCceEec--cccCccCCCCCcccCCCCcchhHHHHHHHHHHhc--------cceEEEEEchhhccccccCCCCCC--
Confidence            6689999988  999999988654   3567899999999988765        356788999999999999986432  


Q ss_pred             hhcccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCC
Q 008919          313 KRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPE  349 (548)
Q Consensus       313 k~~~~~~~~~~tp~s~~~dl~~~~~~~L~~~g~~v~~  349 (548)
                              ..+||+|++.++++.+++||.++|+.+.+
T Consensus       414 --------~~dsp~ta~~~l~~~~~~wl~~aG~~~~~  442 (501)
T d1jv1a_         414 --------GKDNPTTARHALMSLHHCWVLNAGGHFID  442 (501)
T ss_dssp             --------SSSSHHHHHHHHHHHHHHHHHHTTCEEBC
T ss_pred             --------CCCCHHHHHHHHHHHhHHHHHHcCCeEec
Confidence                    12499999999999999999999998754
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure