Citrus Sinensis ID: 008923

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
MNTLLNPEPSFSLIPSIRITKTHYLTHRRLQASRQFSSTDGNRLIGRRIRLTVKADLDSALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFIADPEGSIMGGGGSIGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYYISSINIVTSNLVLQGCHARVSTSRSMPVTMVLSPPTLQELIDR
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHcccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcEEccccccccccccHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccEEccccccccccccHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHccccccccHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHccccccccHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHccccEEEEEEcccccccccccccEEEccccccEEEcccccccccccccccccccHHHHHHcHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHcc
ccccccccccccccccccccccccccccccccHHccccccccccccccEEEEEHHHHcHHHHHHHcccccccccccccccccccccccccccHHHHHHEccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccEEcccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccHHHHHHHHHHHccccEEEcccccccccccccHHHHHHHccccccccHHHHHHHHHHcccEEEEcccHHHHHHHHHHHcHHHHHcccccHHHHHHccccccccccccEEEEEccccHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHEcccccccccccccccHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEcccccEEEEcccccHHHcccc
mntllnpepsfslipsiritkthylthrrlqasrqfsstdgnrliGRRIRLTVKADLDSALIDqlglkesdiinpaisssyrssklpkpnqtLLEAQAkvctgptqtrplredEAFKVLDTILRSAkgdlkdeeEVSKAQLGAFFSAMTIRanafpeatqwsegeRRAMNTFWPLlmralppdvifiadpegsimggggsigphysgndprEMRLVGALREVLagghlgyeeVQGVlrdvlplqvdnkapgvsESLLSAFLIGQRMNRETDRELKAYCLAfddelgpppvadvkslthygepydgntrfFRSTLFVAAVRSCYGescllhgaewmppkggvteEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGlrehikkrppvatsEKVQQFVRAQGREAIVAgfyhegyeEPLLMLMKRRgvhsglvvkgeegaLSMTTRLRsvnaskglpvnycsgfrslnvestfegdgLYNLARLLNCLKFMYYISSINIVTSNLvlqgcharvstsrsmpvtmvlspptlqelidr
mntllnpepsfslipSIRITKTHYLthrrlqasrqfsstdgnrligRRIRLTVKADLDSALIdqlglkesdiinpaisssyrssklpkPNQTLLEAQAKvctgptqtrplredeafKVLDTILRSakgdlkdeeeVSKAQLGAFFSAMTIRANAFpeatqwsegeRRAMNTFWPLLMRALPPDVIFIADPEGSIMGGGGSIGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLrehikkrppvatsEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRlrsvnaskglpvnYCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYYISSINIVTSNLVLQGCHARvstsrsmpvtmvlspptlqelidr
MNTLLNPEPSFSLIPSIRITKTHYLTHRRLQASRQFSSTDGNRLIGRRIRLTVKADLDSALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFIADPEgsimggggsigPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYYISSINIVTSNLVLQGCHARVSTSRSMPVTMVLSPPTLQELIDR
***********SLIPSIRITKTHYLTHRRLQA*******DGNRLIGRRIRLTVKADLDSALIDQLGLKESDII******************************************FKVLDTIL****************QLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFIADPEGSIMGGGG*I**********EMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKR**VAT*EKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYYISSINIVTSNLVLQGCHARVS**********************
**********************************QFSSTDGNRLIGRRIRLTVKADLDSA*******************************TLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRS*************AQLGAFFSAMTIRANAFP*******GERRAMNTFWPLLMRALPPDVIFIADPEGSI*******************RLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRS*************NLARLLNCLKFMYYISSINIVTSNLVLQGCHARVSTSRSMPVTMVLSPPTLQ*****
********PSFSLIPSIRITKTHYLTHRRLQASRQFSSTDGNRLIGRRIRLTVKADLDSALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKG********SKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFIADPEGSIMGGGGSIGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYYISSINIVTSNLVLQGCHARVSTSRSMPVTMVLSPPTLQELIDR
********PSFS*******************A*RQFSSTDGNRLIGRRIRLTVKADLDSALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFIADPEGSIMGGGGSIGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYYISSINIVTSNLVLQGCHARVSTSRSMPVTMVLSPPTLQELIDR
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNTLLNPEPSFSLIPSIRITKTHYLTHRRLQASRQFSSTDGNRLIGRRIRLTVKADLDSALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMRALPPDVIFIADPEGSIMGGGGSIGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGFRSLNVESTFEGDGLYNLARLLNCLKFMYYISSINIVTSNLVLQGCHARVSTSRSMPVTMVLSPPTLQELIDR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query548 2.2.26 [Sep-21-2011]
O66585309 Uncharacterized protein a yes no 0.354 0.627 0.252 9e-06
>sp|O66585|Y209_AQUAE Uncharacterized protein aq_209 OS=Aquifex aeolicus (strain VF5) GN=aq_209 PE=3 SV=1 Back     alignment and function desciption
 Score = 52.4 bits (124), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 36/230 (15%)

Query: 228 LGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGP 287
           L  EE   V R +L  ++       S+   +AFL   R+  ET  EL     A  + +  
Sbjct: 21  LSQEEAYEVFRAILEGKL-------SDIKTTAFLTAMRIKGETSEELLGVIKAIKERMNF 73

Query: 288 PPVADVKSLTHYGEPYDGNTRFFRSTLFV--AAVRSC--YGESCLLHGAEWMPPKGGVTE 343
           P   +       G  YDG  R    T+++  +A+  C   G     H A   P K GVT 
Sbjct: 74  PQKKE--DALDLGLNYDGKNR----TIYILPSALWLCSRLGVEFTNHYALGAPTKEGVTL 127

Query: 344 EQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATS 403
            +++K +G   N+S                +V  +   P LY L+ LR  +  R  + T 
Sbjct: 128 YEVVKELGVDMNVS----------------FVDQKNYAPELYKLMPLRRELGFRSLINT- 170

Query: 404 EKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGAL 453
             V++F+     + IV   +H+ Y +    L++  G+    ++KG EG +
Sbjct: 171 --VEKFLNPFQTKKIVVSIFHKPYFDKNAELLELLGIEDYTIIKGLEGGI 218

Aquifex aeolicus (strain VF5) (taxid: 224324)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query548
255573995589 anthranilate phosphoribosyltransferase, 0.885 0.823 0.813 0.0
225470591593 PREDICTED: anthranilate phosphoribosyltr 0.894 0.826 0.793 0.0
297838857596 hypothetical protein ARALYDRAFT_894871 [ 0.894 0.822 0.752 0.0
449434965591 PREDICTED: anthranilate phosphoribosyltr 0.892 0.827 0.756 0.0
224110902601 predicted protein [Populus trichocarpa] 0.908 0.828 0.730 0.0
18409618595 putative anthranilate phosphoribosyltran 0.894 0.823 0.757 0.0
334183810632 putative anthranilate phosphoribosyltran 0.894 0.775 0.704 0.0
356526769582 PREDICTED: anthranilate phosphoribosyltr 0.877 0.826 0.739 0.0
12324765552 hypothetical protein; 95675-92527 [Arabi 0.782 0.777 0.774 0.0
125537955588 hypothetical protein OsI_05725 [Oryza sa 0.771 0.719 0.750 0.0
>gi|255573995|ref|XP_002527915.1| anthranilate phosphoribosyltransferase, putative [Ricinus communis] gi|223532690|gb|EEF34472.1| anthranilate phosphoribosyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/494 (81%), Positives = 439/494 (88%), Gaps = 9/494 (1%)

Query: 1   MNTLLNPEPSFSLIPSIRITKTHYLTHRRLQASRQFSSTDGNRLIGRR-IRLTVKAD-LD 58
           M  L+NPEP FS+  SIRI     LTH RL +S    STD  R IGRR + L VKA  LD
Sbjct: 1   MKALINPEP-FSI--SIRIASPSNLTHSRLHSSCLRFSTD--RCIGRRNLCLIVKAAALD 55

Query: 59  SALIDQLGLKESDIINPAISSSYRSSKLPKPNQTLLEAQAKVCTGPTQTRPLREDEAFKV 118
           SA++DQLG+ ESDI NPA+SSSYR+SKLPKPNQT+L+AQA+VCTGPTQTRPL ED+AFKV
Sbjct: 56  SAILDQLGIPESDIKNPAVSSSYRNSKLPKPNQTVLDAQARVCTGPTQTRPLNEDQAFKV 115

Query: 119 LDTILRSAKGDLKDEEEVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLMR 178
           LDTILRSA+G+LKDEE+VSKAQLGAFF+AMTIRANAFPE TQWSEGE+RAMN FWPLL+R
Sbjct: 116 LDTILRSARGELKDEEKVSKAQLGAFFAAMTIRANAFPEETQWSEGEKRAMNNFWPLLVR 175

Query: 179 ALPPDVIFIADPEGSIMGGGGSIGPHYSGNDPREMRLVGALREVLAGGHLGYEEVQGVLR 238
           ALPPD+IFIADPEGSIM  G SIGP Y GN   EMRLVGALRE+LAGGHLGYEEVQGVLR
Sbjct: 176 ALPPDLIFIADPEGSIMSIGSSIGPQYVGNCTSEMRLVGALREILAGGHLGYEEVQGVLR 235

Query: 239 DVLPLQV-DNKAPG-VSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKSL 296
           +VLPL V DN+  G VSESLLSAFLIGQRMNRETDRELKAYCLAFDDELG PPVADV+SL
Sbjct: 236 EVLPLNVGDNECSGGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGSPPVADVRSL 295

Query: 297 THYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNL 356
           THYGEPYDGNTRFFRSTLFVAAVRSCYGES LLHG +WMPPKGG+TEEQMLK+MGA+T+L
Sbjct: 296 THYGEPYDGNTRFFRSTLFVAAVRSCYGESSLLHGVDWMPPKGGITEEQMLKYMGANTSL 355

Query: 357 SVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGRE 416
           + LQAKELLEDEE+GFAY+S REA P LYSL GLREHIKKRPP+AT+EKVQQFVRAQG+E
Sbjct: 356 TPLQAKELLEDEEVGFAYISQREACPPLYSLTGLREHIKKRPPLATTEKVQQFVRAQGKE 415

Query: 417 AIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSVNASKGLPVNYCSGF 476
           AIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRS NASKGLPVNYCSGF
Sbjct: 416 AIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTTRLRSANASKGLPVNYCSGF 475

Query: 477 RSLNVESTFEGDGL 490
           RSL+  S FE DG+
Sbjct: 476 RSLSRASAFEVDGV 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225470591|ref|XP_002274188.1| PREDICTED: anthranilate phosphoribosyltransferase [Vitis vinifera] gi|296083417|emb|CBI23370.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297838857|ref|XP_002887310.1| hypothetical protein ARALYDRAFT_894871 [Arabidopsis lyrata subsp. lyrata] gi|297333151|gb|EFH63569.1| hypothetical protein ARALYDRAFT_894871 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449434965|ref|XP_004135266.1| PREDICTED: anthranilate phosphoribosyltransferase-like [Cucumis sativus] gi|449478600|ref|XP_004155365.1| PREDICTED: anthranilate phosphoribosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224110902|ref|XP_002315676.1| predicted protein [Populus trichocarpa] gi|222864716|gb|EEF01847.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18409618|ref|NP_564991.1| putative anthranilate phosphoribosyltransferase [Arabidopsis thaliana] gi|13430748|gb|AAK25996.1|AF360286_1 unknown protein [Arabidopsis thaliana] gi|15293217|gb|AAK93719.1| unknown protein [Arabidopsis thaliana] gi|332196959|gb|AEE35080.1| putative anthranilate phosphoribosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334183810|ref|NP_001185362.1| putative anthranilate phosphoribosyltransferase [Arabidopsis thaliana] gi|332196960|gb|AEE35081.1| putative anthranilate phosphoribosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356526769|ref|XP_003531989.1| PREDICTED: anthranilate phosphoribosyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|12324765|gb|AAG52347.1|AC011663_26 hypothetical protein; 95675-92527 [Arabidopsis thaliana] gi|12325051|gb|AAG52478.1|AC010796_17 hypothetical protein; 58827-61975 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|125537955|gb|EAY84350.1| hypothetical protein OsI_05725 [Oryza sativa Indica Group] gi|125580691|gb|EAZ21622.1| hypothetical protein OsJ_05251 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query548
TIGR_CMR|CHY_1585340 CHY_1585 "anthranilate phospho 0.474 0.764 0.231 0.00013
TIGR_CMR|CHY_1585 CHY_1585 "anthranilate phosphoribosyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
 Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 67/289 (23%), Positives = 118/289 (40%)

Query:   219 LREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYC 278
             L  ++ G +L + E    + +++    + K    +E+ ++AFL+  +M  ET+ E+ A+ 
Sbjct:     6 LERLMRGENLNFSEALATMNELM----EGK---YTEAQVAAFLVALKMKGETEEEISAFA 58

Query:   279 LAFDDELGPPPVADVKSLTHY-GEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPP 337
             LA  ++     +   + L    G   DG   F  ST     V    G     HG   +  
Sbjct:    59 LALREK-ARRVITQTEGLVDTCGTGGDGRQTFNISTAAAFVVAGA-GIPVAKHGNRSVSS 116

Query:   338 KGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKR 397
             + G  +  +L+ +G + +L        +++  IGF +       P++  +   R  I  R
Sbjct:   117 RSGSAD--VLEALGVNIDLDAKGTARCVDEIGIGFLFAP--NLHPAMRHVAKTRREIGVR 172

Query:   398 PPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA--LSM 455
                     +       G+   V G +    +E L  ++   GV    VV G  G   +S+
Sbjct:   173 TVFNILGPLANPANIVGQ---VLGVFTPELQETLAKVLNNLGVERAFVVHGHGGLDEVSL 229

Query:   456 T--TRLRSVNASK---GL--PVNYCSGFRSLNVESTFEGDGLYNLARLL 497
             T  TR+  +N  K    L  P++Y  GF   ++     GD   N ARLL
Sbjct:   230 TGPTRVFELNRGKIDSYLFDPLSY--GFSYCSLRDLQGGDAFEN-ARLL 275


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      548       537   0.00093  119 3  11 22  0.40    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  276 KB (2146 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  42.47u 0.09s 42.56t   Elapsed:  00:00:01
  Total cpu time:  42.47u 0.09s 42.56t   Elapsed:  00:00:01
  Start:  Sat May 11 10:31:29 2013   End:  Sat May 11 10:31:30 2013
GO:0000162 "tryptophan biosynthetic process" evidence=ISS
GO:0004048 "anthranilate phosphoribosyltransferase activity" evidence=ISS

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00009480001
SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (593 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
PRK07394342 PRK07394, PRK07394, hypothetical protein; Provisio 3e-23
COG0547338 COG0547, TrpD, Anthranilate phosphoribosyltransfer 8e-15
PRK09071323 PRK09071, PRK09071, hypothetical protein; Validate 1e-04
pfam0288566 pfam02885, Glycos_trans_3N, Glycosyl transferase f 5e-04
>gnl|CDD|168934 PRK07394, PRK07394, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  100 bits (252), Expect = 3e-23
 Identities = 66/196 (33%), Positives = 97/196 (49%), Gaps = 8/196 (4%)

Query: 259 AFLIGQRMNRETDRELKAYCLAFDDELGP--PPVADVKSLTHYGEPYDGNTRFFRSTLFV 316
           AFLI  R+ R T  EL      +D ELGP     ++ +    +G PYDG +R        
Sbjct: 46  AFLIAHRIKRPTPEELAGMLDTYD-ELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLT 104

Query: 317 AAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGAS-TNLSVLQAKELLEDEEIGFAYV 375
           A + +  G+  +LHG + MP K GV   ++ + +G   T LS+ Q +E    E+ G A++
Sbjct: 105 ALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSLEQVQEGF--EQTGLAFI 162

Query: 376 SLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLM 435
              +  P   SLI  R+ I KRPP+AT E +  +   QG   +V+GF H   E      +
Sbjct: 163 YQPDHFPLAESLIPYRDEIGKRPPLATLELI--WTPHQGDHHLVSGFVHPPTEARAWEAL 220

Query: 436 KRRGVHSGLVVKGEEG 451
           + RG  +   VKG EG
Sbjct: 221 ELRGETNFTTVKGLEG 236

Length = 342
>gnl|CDD|223621 COG0547, TrpD, Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|181637 PRK09071, PRK09071, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|145834 pfam02885, Glycos_trans_3N, Glycosyl transferase family, helical bundle domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 548
PRK09522531 bifunctional glutamine amidotransferase/anthranila 100.0
PRK14607534 bifunctional glutamine amidotransferase/anthranila 100.0
COG0547338 TrpD Anthranilate phosphoribosyltransferase [Amino 100.0
PRK07394342 hypothetical protein; Provisional 100.0
PLN02641343 anthranilate phosphoribosyltransferase 100.0
PRK08136317 glycosyl transferase family protein; Provisional 100.0
PRK00188339 trpD anthranilate phosphoribosyltransferase; Provi 100.0
PRK09071323 hypothetical protein; Validated 100.0
TIGR01245330 trpD anthranilate phosphoribosyltransferase. In ma 100.0
PF00591252 Glycos_transf_3: Glycosyl transferase family, a/b 100.0
PRK06078434 pyrimidine-nucleoside phosphorylase; Reviewed 100.0
KOG1438373 consensus Anthranilate phosphoribosyltransferase [ 100.0
TIGR02644405 Y_phosphoryl pyrimidine-nucleoside phosphorylase. 100.0
PRK04350490 thymidine phosphorylase; Provisional 100.0
PRK05820 440 deoA thymidine phosphorylase; Reviewed 100.0
TIGR02645493 ARCH_P_rylase putative thymidine phosphorylase. Me 100.0
TIGR02643 437 T_phosphoryl thymidine phosphorylase. Thymidine ph 100.0
TIGR03327500 AMP_phos AMP phosphorylase. This enzyme family is 100.0
COG0213435 DeoA Thymidine phosphorylase [Nucleotide transport 99.82
COG0512191 PabA Anthranilate/para-aminobenzoate synthases com 99.71
PF0288566 Glycos_trans_3N: Glycosyl transferase family, heli 99.68
KOG0026223 consensus Anthranilate synthase, beta chain [Amino 99.3
PLN02889 918 oxo-acid-lyase/anthranilate synthase 99.12
PRK08007187 para-aminobenzoate synthase component II; Provisio 98.96
PRK07649195 para-aminobenzoate/anthranilate synthase glutamine 98.71
KOG1224 767 consensus Para-aminobenzoate (PABA) synthase ABZ1 98.59
TIGR00566188 trpG_papA glutamine amidotransferase of anthranila 98.5
PLN02335222 anthranilate synthase 98.4
CHL00101190 trpG anthranilate synthase component 2 98.28
PRK06774191 para-aminobenzoate synthase component II; Provisio 98.25
PRK08857193 para-aminobenzoate synthase component II; Provisio 98.25
PRK05670189 anthranilate synthase component II; Provisional 98.22
PLN02771415 carbamoyl-phosphate synthase (glutamine-hydrolyzin 98.21
PRK06895190 putative anthranilate synthase component II; Provi 98.16
TIGR01815717 TrpE-clade3 anthranilate synthase, alpha proteobac 98.01
TIGR01823 742 PabB-fungal aminodeoxychorismate synthase, fungal 97.94
PRK05637208 anthranilate synthase component II; Provisional 97.85
PRK07765214 para-aminobenzoate synthase component II; Provisio 97.8
PRK13566720 anthranilate synthase; Provisional 97.75
PRK12838354 carbamoyl phosphate synthase small subunit; Review 97.74
cd01744178 GATase1_CPSase Small chain of the glutamine-depend 97.69
TIGR01368358 CPSaseIIsmall carbamoyl-phosphate synthase, small 97.69
PRK12564360 carbamoyl phosphate synthase small subunit; Review 97.63
cd01743184 GATase1_Anthranilate_Synthase Type 1 glutamine ami 97.61
CHL00197382 carA carbamoyl-phosphate synthase arginine-specifi 97.49
PRK06490239 glutamine amidotransferase; Provisional 97.2
PF00117192 GATase: Glutamine amidotransferase class-I; InterP 97.16
PRK09065237 glutamine amidotransferase; Provisional 97.09
PRK07567242 glutamine amidotransferase; Provisional 96.75
cd01745189 GATase1_2 Subgroup of proteins having the Type 1 g 96.74
PRK00758184 GMP synthase subunit A; Validated 96.67
PLN02347536 GMP synthetase 96.55
cd01742181 GATase1_GMP_Synthase Type 1 glutamine amidotransfe 96.44
COG0505368 CarA Carbamoylphosphate synthase small subunit [Am 95.97
PRK11366254 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; 95.65
TIGR00888188 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N 95.26
cd01741188 GATase1_1 Subgroup of proteins having the Type 1 g 94.34
PRK05665240 amidotransferase; Provisional 94.09
PRK00074511 guaA GMP synthase; Reviewed 93.89
PRK08250235 glutamine amidotransferase; Provisional 93.77
PRK13527200 glutamine amidotransferase subunit PdxT; Provision 93.13
PRK08136317 glycosyl transferase family protein; Provisional 92.53
CHL00188210 hisH imidazole glycerol phosphate synthase subunit 91.93
PRK07053234 glutamine amidotransferase; Provisional 91.72
PRK13141205 hisH imidazole glycerol phosphate synthase subunit 91.06
PRK13152201 hisH imidazole glycerol phosphate synthase subunit 90.6
PRK13181199 hisH imidazole glycerol phosphate synthase subunit 89.6
TIGR01855196 IMP_synth_hisH imidazole glycerol phosphate syntha 89.42
PF0428271 DUF438: Family of unknown function (DUF438); Inter 88.58
cd01748198 GATase1_IGP_Synthase Type 1 glutamine amidotransfe 88.33
PRK07394342 hypothetical protein; Provisional 87.99
PRK13170196 hisH imidazole glycerol phosphate synthase subunit 87.89
PRK09071323 hypothetical protein; Validated 87.67
cd01747273 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot 87.39
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 84.12
PF0288566 Glycos_trans_3N: Glycosyl transferase family, heli 83.85
COG0518198 GuaA GMP synthase - Glutamine amidotransferase dom 83.34
TIGR00337525 PyrG CTP synthase. CTP synthase is involved in pyr 80.28
PRK14004210 hisH imidazole glycerol phosphate synthase subunit 80.25
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-81  Score=682.64  Aligned_cols=392  Identities=16%  Similarity=0.182  Sum_probs=348.7

Q ss_pred             ceeeCCCCCCCCChhhhhhhHHHHHHHhhcCCCccc-cccHHHHhHHHHhhhhccccCCCCCcCCHHHHHHHHhhhhHHh
Q 008923           99 KVCTGPTQTRPLREDEAFKVLDTILRSAKGDLKDEE-EVSKAQLGAFFSAMTIRANAFPEATQWSEGERRAMNTFWPLLM  177 (548)
Q Consensus        99 ~v~~gp~~~~P~~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~q~gaffga~~~r~~~~p~~~~~s~~e~~~~~~~~~~l~  177 (548)
                      .|++||||+.|.   +++.+.+. ++++..++|++| |+|||.|+.+||+.+.|. ..+.||+.+.     +.+.+..+|
T Consensus        51 ~IIlSpGPg~p~---d~~~~~~i-~~~~~~~iPILGIClG~QlLa~a~GG~V~~~-~~~~~G~~~~-----i~~~~~~lf  120 (531)
T PRK09522         51 VLMLSPGPGVPS---EAGCMPEL-LTRLRGKLPIIGICLGHQAIVEAYGGYVGQA-GEILHGKASS-----IEHDGQAMF  120 (531)
T ss_pred             EEEEcCCCCChh---hCCCCHHH-HHHHhcCCCEEEEcHHHHHHHHhcCCEEEeC-CceeeeeEEE-----EeecCCccc
Confidence            699999999997   55555555 777888999999 999999999999999997 7788887542     222222222


Q ss_pred             -----------------hhCCCceEEEeCCCCCccccCCCC----CCCCCCCC---------------------CccCcH
Q 008923          178 -----------------RALPPDVIFIADPEGSIMGGGGSI----GPHYSGND---------------------PREMRL  215 (548)
Q Consensus       178 -----------------~~lp~~~~f~a~p~g~iMg~~~~~----g~~~~~~~---------------------~~~~~~  215 (548)
                                       ..+|+.+.++|..||.+|+++|+.    |++|.|.+                     +++..|
T Consensus       121 ~~~~~~~~v~~~Hs~~v~~lP~~l~vlA~sd~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~~~~~~~~  200 (531)
T PRK09522        121 AGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNTL  200 (531)
T ss_pred             cCCCCCcEEEEehheecccCCCCcEEEEecCCCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhcCCCCCCH
Confidence                             468999999998899999999965    66776553                     355679


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCCCCCCC
Q 008923          216 VGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPVADVKS  295 (548)
Q Consensus       216 ~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~~~~~~  295 (548)
                      +++|+|+..|++||+|||+++|+.||       +|+++|+|+||||++||+||||+|||+||++||++++.+++.++...
T Consensus       201 ~~~l~~~~~~~~Lt~eea~~~~~~il-------~g~~~~~qi~AfL~alr~kget~eEl~g~~~a~~~~~~~~~~~~~~~  273 (531)
T PRK09522        201 QPILEKLYQAQTLSQQESHQLFSAVV-------RGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLF  273 (531)
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCCc
Confidence            99999999999999999999999999       99999999999999999999999999999999999998775443347


Q ss_pred             eeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceEEe
Q 008923          296 LTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFAYV  375 (548)
Q Consensus       296 vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~GfaFL  375 (548)
                      +|+|||||||++|||+||+ +|+|+|++|+||+|||||++|||+|+  +|+||+|||+++++++++.++|++  +||+||
T Consensus       274 iD~~gtGgdg~~t~nist~-aa~v~A~~Gv~V~kHG~r~~ss~~Gs--advlealGi~~~~~~~~~~~~l~~--~g~~fl  348 (531)
T PRK09522        274 ADIVGTGGDGSNSINISTA-SAFVAAACGLKVAKHGNRSVSSKSGS--SDLLAAFGINLDMNADKSRQALDE--LGVCFL  348 (531)
T ss_pred             ccccCCCCCCCCCcccHHH-HHHHHHhCCCcEEEeCCCCCCCCccH--HHHHHHcCCCCCCCHHHHHHHHHH--hCcEEE
Confidence            9999999999999999999 99999999999999999999999999  999999999999999999999999  999999


Q ss_pred             cccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc--c
Q 008923          376 SLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA--L  453 (548)
Q Consensus       376 ~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~--i  453 (548)
                      |||.|||+|++++++|++||+||++|+.+++   +||+++++||+||||++|.++|+++++++|+++++|||| +|+  +
T Consensus       349 ~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL---~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G-~G~DEi  424 (531)
T PRK09522        349 FAPKYHTGFRHAMPVRQQLKTRTLFNVLGPL---INPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS-GGMDEV  424 (531)
T ss_pred             EhhHhCHHHHHHHHHHHHhCCCcHHHHHHHh---cCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC-CCcccc
Confidence            9999999999999999999999999999986   899999999999999999999999999999999999999 786  9


Q ss_pred             cccCCeeEEEecCCceeEEeecCccCCCCCC----------cCCccHHH------------HHHHhcHHHHHHHhcccCc
Q 008923          454 SMTTRLRSVNASKGLPVNYCSGFRSLNVEST----------FEGDGLYN------------LARLLNCLKFMYYISSINI  511 (548)
Q Consensus       454 S~~g~T~v~el~~G~~i~y~~~~~~~~~~~~----------~en~~il~------------~~~~LNAAaaLyv~g~a~~  511 (548)
                      |++++|+|+++++|++.+|++++++++++..          .+|+++++            .++++|||++||+.|. ++
T Consensus       425 s~~~~t~v~~~~~g~i~~~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~~vl~G~~~~~~~~~v~~naa~~l~~~g~-~~  503 (531)
T PRK09522        425 SLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGH-ED  503 (531)
T ss_pred             CCCCceEEEEEcCCeEEEEEECHHHcCCCCCCHHHhcCCCHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHHcCC-CC
Confidence            9999999999999977789999888886533          24544332            4566999999999996 99


Q ss_pred             hhhhhh
Q 008923          512 VTSNLV  517 (548)
Q Consensus       512 l~~g~~  517 (548)
                      |++|+.
T Consensus       504 l~~g~~  509 (531)
T PRK09522        504 LQANAQ  509 (531)
T ss_pred             HHHHHH
Confidence            999984

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07394 hypothetical protein; Provisional Back     alignment and domain information
>PLN02641 anthranilate phosphoribosyltransferase Back     alignment and domain information
>PRK08136 glycosyl transferase family protein; Provisional Back     alignment and domain information
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09071 hypothetical protein; Validated Back     alignment and domain information
>TIGR01245 trpD anthranilate phosphoribosyltransferase Back     alignment and domain information
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2 Back     alignment and domain information
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed Back     alignment and domain information
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase Back     alignment and domain information
>PRK04350 thymidine phosphorylase; Provisional Back     alignment and domain information
>PRK05820 deoA thymidine phosphorylase; Reviewed Back     alignment and domain information
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase Back     alignment and domain information
>TIGR02643 T_phosphoryl thymidine phosphorylase Back     alignment and domain information
>TIGR03327 AMP_phos AMP phosphorylase Back     alignment and domain information
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02889 oxo-acid-lyase/anthranilate synthase Back     alignment and domain information
>PRK08007 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated Back     alignment and domain information
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase Back     alignment and domain information
>PLN02335 anthranilate synthase Back     alignment and domain information
>CHL00101 trpG anthranilate synthase component 2 Back     alignment and domain information
>PRK06774 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>PRK08857 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>PRK05670 anthranilate synthase component II; Provisional Back     alignment and domain information
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PRK06895 putative anthranilate synthase component II; Provisional Back     alignment and domain information
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade Back     alignment and domain information
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade Back     alignment and domain information
>PRK05637 anthranilate synthase component II; Provisional Back     alignment and domain information
>PRK07765 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>PRK13566 anthranilate synthase; Provisional Back     alignment and domain information
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed Back     alignment and domain information
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II Back     alignment and domain information
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit Back     alignment and domain information
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed Back     alignment and domain information
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase Back     alignment and domain information
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional Back     alignment and domain information
>PRK06490 glutamine amidotransferase; Provisional Back     alignment and domain information
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group [] Back     alignment and domain information
>PRK09065 glutamine amidotransferase; Provisional Back     alignment and domain information
>PRK07567 glutamine amidotransferase; Provisional Back     alignment and domain information
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain Back     alignment and domain information
>PRK00758 GMP synthase subunit A; Validated Back     alignment and domain information
>PLN02347 GMP synthetase Back     alignment and domain information
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase Back     alignment and domain information
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional Back     alignment and domain information
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit Back     alignment and domain information
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain Back     alignment and domain information
>PRK05665 amidotransferase; Provisional Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>PRK08250 glutamine amidotransferase; Provisional Back     alignment and domain information
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional Back     alignment and domain information
>PRK08136 glycosyl transferase family protein; Provisional Back     alignment and domain information
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional Back     alignment and domain information
>PRK07053 glutamine amidotransferase; Provisional Back     alignment and domain information
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit Back     alignment and domain information
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins Back     alignment and domain information
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) Back     alignment and domain information
>PRK07394 hypothetical protein; Provisional Back     alignment and domain information
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>PRK09071 hypothetical protein; Validated Back     alignment and domain information
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00337 PyrG CTP synthase Back     alignment and domain information
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 58/410 (14%), Positives = 110/410 (26%), Gaps = 132/410 (32%)

Query: 227 HLGYE--EVQGVLRDVLPLQVDN-----KAPGVSESLLSAFLIGQRMNRETDRELKAYCL 279
           H+ +E  E Q   +D+L +  D          V +   S           +  E      
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL---------SKEE------ 50

Query: 280 AFDDELG-PPPVADVK----SLTHYGEPYDGNTRFFRSTL-----FVAA----------- 318
             D  +     V+       +L    E  +   +F    L     F+ +           
Sbjct: 51  -IDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 319 VRSCYGESCL--LHGAEWMPPKGGVT-EEQMLKFMGASTNL----------------SVL 359
           +   Y       L+    +  K  V+  +  LK   A   L                + +
Sbjct: 108 MTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 360 QAKELLEDEEI------GFAYVSLREA-RP--------SLYSLIGL----REHIKKRPPV 400
            A ++    ++         +++L+    P         L   I      R        +
Sbjct: 167 -ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 401 ATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALS------ 454
                +Q  +R             + YE  LL+L     V +         A +      
Sbjct: 226 RI-HSIQAELRRL--------LKSKPYENCLLVL---LNVQNAKAWN----AFNLSCKIL 269

Query: 455 MTTRLRSVNASKGLPVNYCSGFRSLNVESTF---EGDGLYNLARLLNCLKFM-------- 503
           +TTR + V     L     +     +   T    E   L  L + L+C            
Sbjct: 270 LTTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTT 325

Query: 504 --YYISSI------NIVTSNLVLQGCHARVSTSRSMPVTMVLSPPTLQEL 545
               +S I       + T +        +++T     +  VL P   +++
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKM 374
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query548
4hkm_A346 Anthranilate phosphoribosyltransferase; structural 100.0
1khd_A345 Anthranilate phosphoribosyltransferase; type 3 PRT 100.0
1o17_A345 Anthranilate PRT, anthranilate phosphoribosyltrans 100.0
1vqu_A374 Anthranilate phosphoribosyltransferase 2; 17130499 100.0
3r88_A377 Anthranilate phosphoribosyltransferase; anthranili 100.0
2elc_A329 Trp D, anthranilate phosphoribosyltransferase; str 100.0
2dsj_A423 Pyrimidine-nucleoside (thymidine) phosphorylase; p 100.0
3h5q_A436 PYNP, pyrimidine-nucleoside phosphorylase; structu 100.0
1brw_A433 PYNP, protein (pyrimidine nucleoside phosphorylase 100.0
1uou_A 474 Thymidine phosphorylase; transferase, glycosyltran 100.0
2tpt_A440 Thymidine phosphorylase; transferase, salvage path 100.0
1qdl_B195 Protein (anthranilate synthase (TRPG-SUBUNIT)); tr 97.98
3r75_A645 Anthranilate/para-aminobenzoate synthases compone; 97.76
1i1q_B192 Anthranilate synthase component II; tryptophan bio 97.63
1a9x_B379 Carbamoyl phosphate synthetase (small chain); amid 97.37
1wl8_A189 GMP synthase [glutamine-hydrolyzing] subunit A; tr 97.06
3l7n_A236 Putative uncharacterized protein; glutamine amidot 96.86
2a9v_A212 GMP synthase; structural genomics, joint center fo 96.63
1o1y_A239 Conserved hypothetical protein TM1158; flavodoxin- 96.21
3m3p_A250 Glutamine amido transferase; structural genomics, 95.55
3uow_A556 GMP synthetase; structural genomics consortium, SG 95.26
2vxo_A 697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 95.05
1gpm_A525 GMP synthetase, XMP aminase; class I glutamine ami 94.68
2ywb_A503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 94.59
2w7t_A273 CTP synthetase, putative cytidine triphosphate syn 94.08
1s1m_A545 CTP synthase; CTP synthetase, UTP:ammonia ligase ( 93.83
2v4u_A289 CTP synthase 2; pyrimidine biosynthesis, glutamine 93.48
2vpi_A218 GMP synthase; guanine monophosphate synthetase, ph 93.41
3tqi_A527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 92.9
1l9x_A315 Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO 91.68
3fij_A254 LIN1909 protein; 11172J, uncharacterized protein, 91.01
4gud_A211 Imidazole glycerol phosphate synthase subunit His; 88.23
1vco_A550 CTP synthetase; tetramer, riken structural genomic 80.22
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV} Back     alignment and structure
Probab=100.00  E-value=8.3e-72  Score=577.08  Aligned_cols=305  Identities=19%  Similarity=0.229  Sum_probs=264.7

Q ss_pred             ccCcHHHHHHHHhcCCCCCHHHHHHHHHHhccCccCCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhCCCCCC
Q 008923          211 REMRLVGALREVLAGGHLGYEEVQGVLRDVLPLQVDNKAPGVSESLLSAFLIGQRMNRETDRELKAYCLAFDDELGPPPV  290 (548)
Q Consensus       211 ~~~~~~~~L~kL~~G~~LS~eEA~~am~~IL~~~~~~~~G~~sdaQigAFLiaLR~KGET~eEIaGfa~Amr~~~~~i~~  290 (548)
                      |++.++++|+|+.+|++||+||++++|+.||       +|+++|+|+||||++||+||||+||++||++||+++..++++
T Consensus         2 m~~~~~e~l~~~~~~~~Lt~eEa~~~~~~il-------~G~~~d~QiaAfL~alr~kget~eEi~g~~~am~~~~~~v~~   74 (346)
T 4hkm_A            2 MPITPQQALQRTIEHREIFHDEMVDLMRQIM-------RGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRRVEV   74 (346)
T ss_dssp             -CCCHHHHHHHHHTTCCCCHHHHHHHHHHHH-------TTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCC
T ss_pred             CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCC
Confidence            5678899999999999999999999999999       999999999999999999999999999999999999999887


Q ss_pred             CC-CCCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhcc
Q 008923          291 AD-VKSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEE  369 (548)
Q Consensus       291 ~~-~~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~  369 (548)
                      ++ .++||+|||||||.+||||||+ +|+|+|++|++|+|||||++||++|+  +|+||+||+++++++++++++|++  
T Consensus        75 ~~~~~~vD~~gTGGdg~~t~niSt~-~a~v~Aa~G~~V~khG~r~~ss~~Gs--aD~LeaLG~~~~ls~~~~~~~l~~--  149 (346)
T 4hkm_A           75 TDRRHMVDIVGTGGDGSHTFNISTC-AMFVAAAGGAKVAKHGNRSVSSKSGS--ADALEALGAVIELQPEQVAASLAQ--  149 (346)
T ss_dssp             SCCTTEEEEECC------CCCHHHH-HHHHHHHTTCEEEEEC---------C--HHHHHTTTCCCCCCHHHHHHHHHH--
T ss_pred             CCCccceeecCCCCCCccccCcHHH-HHHHHHhcCCCeeecCCCCCCCCcCH--HHHHHHcCCCcccCHHHHHHHHHh--
Confidence            54 3579999999999999999999 99999999999999999999999999  999999999999999999999999  


Q ss_pred             CceEEecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcC
Q 008923          370 IGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGE  449 (548)
Q Consensus       370 ~GfaFL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~  449 (548)
                      .||+|+|||.|||+|++++++|++||+||++|..+++   +||+++++||+||||++|.++|+++++.+|+++++||||.
T Consensus       150 ~g~~fl~a~~~~Pa~k~l~~~R~~lg~rT~fn~lgpL---~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~a~vv~g~  226 (346)
T 4hkm_A          150 TGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPL---TNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGR  226 (346)
T ss_dssp             HSEEEECHHHHCGGGGGTHHHHHHHCSCCTHHHHGGG---CCTTCCSEEEEECSSTHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             cCcchhchhhhChhHHHHhhheeccCCCchhhhcccc---cCCCCCcceEeeccCHHHhHHHHHHHHHcCCCeEEEEecC
Confidence            9999999999999999999999999999999999886   8999999999999999999999999999999999999999


Q ss_pred             CCc--ccccCCeeEEEecCCceeEEeecCccCCCC----------CCcCCccHHH-----------HHHHhcHHHHHHHh
Q 008923          450 EGA--LSMTTRLRSVNASKGLPVNYCSGFRSLNVE----------STFEGDGLYN-----------LARLLNCLKFMYYI  506 (548)
Q Consensus       450 eG~--iS~~g~T~v~el~~G~~i~y~~~~~~~~~~----------~~~en~~il~-----------~~~~LNAAaaLyv~  506 (548)
                      ||+  ++++++|++|++++|...+|.++++++++.          ++.+|+++++           .++++|||++||++
T Consensus       227 ~G~dEis~~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~~~~g~~~e~a~~~~~vl~g~~~~~~d~v~lnaa~~L~~~  306 (346)
T 4hkm_A          227 DGMDELSLGAGTLVGELRDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALYVA  306 (346)
T ss_dssp             TTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCC---------CCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHT
T ss_pred             CCchhhhhccCceEEEEeCCceeEecCCHHHcCCccCcccccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHc
Confidence            997  999999999999999888999998887764          3336655432           45669999999999


Q ss_pred             cccCchhhh-----------hhhhccccccccCcc
Q 008923          507 SSINIVTSN-----------LVLQGCHARVSTSRS  530 (548)
Q Consensus       507 g~a~~l~~g-----------~~~~~~~~~~~~~~~  530 (548)
                      |+++++++|           -.++++.+.|+.|++
T Consensus       307 g~a~sl~eg~~~A~~~l~sG~A~~~l~~~i~~s~~  341 (346)
T 4hkm_A          307 GVADSIADGIVRARQVLADGSARACLDAYVAFTQQ  341 (346)
T ss_dssp             TSSSSHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            999986655           556777777777654
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A Back     alignment and structure
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A* Back     alignment and structure
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP} Back     alignment and structure
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A Back     alignment and structure
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A Back     alignment and structure
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus} Back     alignment and structure
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 Back     alignment and structure
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A Back     alignment and structure
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A Back     alignment and structure
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Back     alignment and structure
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Back     alignment and structure
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Back     alignment and structure
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Back     alignment and structure
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Back     alignment and structure
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Back     alignment and structure
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Back     alignment and structure
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Back     alignment and structure
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Back     alignment and structure
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Back     alignment and structure
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} Back     alignment and structure
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* Back     alignment and structure
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A Back     alignment and structure
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Back     alignment and structure
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Back     alignment and structure
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae} Back     alignment and structure
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 548
d1o17a2273 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltra 1e-08
d1khda2264 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltra 1e-08
d2elca2264 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltra 4e-07
d1o17a170 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltrans 3e-05
d1brwa170 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphoryl 1e-04
d2elca152 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltrans 1e-04
d1khda169 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltran 4e-04
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 273 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 13/160 (8%)

Query: 300 GEPYDGNTRFFRSTL--FVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLS 357
           G   DG      ST    + ++          HG   +  K G  +  +L+ +G +  + 
Sbjct: 9   GTGGDGLGTVNVSTASAILLSL----VNPVAKHGNRAVSGKSGSAD--VLEALGYNIIVP 62

Query: 358 VLQAKELLEDEEIGFAYVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREA 417
             +AKEL+   +  F ++  +   P++ ++  +R+ +  R        +     A+    
Sbjct: 63  PERAKELVN--KTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAK---Y 117

Query: 418 IVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGALSMTT 457
            + G + + + + L         +  ++V GE G   ++ 
Sbjct: 118 QLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSP 157
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Length = 264 Back     information, alignment and structure
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Length = 264 Back     information, alignment and structure
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 70 Back     information, alignment and structure
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 70 Back     information, alignment and structure
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Length = 52 Back     information, alignment and structure
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Length = 69 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query548
d1o17a2273 Anthranilate phosphoribosyltransferase (TrpD) {Arc 100.0
d1khda2264 Anthranilate phosphoribosyltransferase (TrpD) {Pec 100.0
d2elca2264 Anthranilate phosphoribosyltransferase (TrpD) {The 100.0
d1brwa2260 Pyrimidine nucleoside phosphorylase {Bacillus stea 100.0
d1uoua2273 Thymidine phosphorylase {Human (Homo sapiens) [Tax 100.0
d2tpta2265 Thymidine phosphorylase {Escherichia coli [TaxId: 100.0
d1o17a170 Anthranilate phosphoribosyltransferase (TrpD) {Arc 99.69
d1khda169 Anthranilate phosphoribosyltransferase (TrpD) {Pec 99.69
d1brwa170 Pyrimidine nucleoside phosphorylase {Bacillus stea 99.64
d1uoua168 Thymidine phosphorylase {Human (Homo sapiens) [Tax 99.59
d2tpta170 Thymidine phosphorylase {Escherichia coli [TaxId: 99.57
d2elca152 Anthranilate phosphoribosyltransferase (TrpD) {The 99.45
d1a9xb2228 Carbamoyl phosphate synthetase, small subunit C-te 98.82
d1i7qb_192 Anthranilate synthase GAT subunit, TrpG {Serratia 98.26
d1qdlb_195 Anthranilate synthase GAT subunit, TrpG {Archaeon 97.92
d1wl8a1188 GMP synthase subunit A, GuaAA {Archaeon Pyrococcus 97.85
d1gpma2205 GMP synthetase {Escherichia coli [TaxId: 562]} 97.43
d2a9va1196 GMP synthase subunit A, GuaAA {Archaeon Thermoplas 97.18
d1o1ya_230 Hypothetical protein TM1158 {Thermotoga maritima [ 96.3
d2elca152 Anthranilate phosphoribosyltransferase (TrpD) {The 87.35
d2nv0a1195 Hypothetical protein YaaE {Bacillus subtilis [TaxI 81.34
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=4.8e-60  Score=473.46  Aligned_cols=216  Identities=14%  Similarity=0.111  Sum_probs=196.5

Q ss_pred             CCeeEEcCCCCCCCccccchHHHHHHHhhcCCeEEeecCCCCCCCCCCcHHHHHHhCCCCCCCCHHHHHHHHHhccCceE
Q 008923          294 KSLTHYGEPYDGNTRFFRSTLFVAAVRSCYGESCLLHGAEWMPPKGGVTEEQMLKFMGASTNLSVLQAKELLEDEEIGFA  373 (548)
Q Consensus       294 ~~vDi~GTGGDG~~tfNiST~laAiVaAaaGv~VaKHGnRsvsSksGSt~ADvLEaLGi~i~lspe~a~~~Lee~~~Gfa  373 (548)
                      +.||+|||||||++||||||+ +|||+|++| ||+|||||++||||||  +|+||+|||++++++++++++|++  .||+
T Consensus         3 ~~~D~~GTGgDg~~t~NiSt~-~a~v~a~~g-~VaKHGnr~~ssk~GS--aDvLe~LGi~~~~~~~~~~~~l~~--~g~~   76 (273)
T d1o17a2           3 NAIDTAGTGGDGLGTVNVSTA-SAILLSLVN-PVAKHGNRAVSGKSGS--ADVLEALGYNIIVPPERAKELVNK--TNFV   76 (273)
T ss_dssp             TCEECCC----CCCBCCHHHH-HHHHHTTTS-CEEEEECCCSSSSCSH--HHHHHHHTBCCCCCHHHHHHHHHH--HSEE
T ss_pred             CccccCcCCCCCCCCcchhHH-HHHHHhcCC-cEEEECCCCCCCCcCH--HHHHHHcCCCCCCCHHHHHHHHHH--cCce
Confidence            379999999999999999999 999999998 9999999999999999  999999999999999999999999  9999


Q ss_pred             EecccccchhhhhHHHhhcccCCCCccccchhhhhhhcccCCCeEEEeecCCCchHHHHHHHHHcCCCeEEEEEcCCCc-
Q 008923          374 YVSLREARPSLYSLIGLREHIKKRPPVATSEKVQQFVRAQGREAIVAGFYHEGYEEPLLMLMKRRGVHSGLVVKGEEGA-  452 (548)
Q Consensus       374 FL~Ap~~hPamk~l~~iRk~LGvRTPL~npak~l~~LNPa~a~~qViGVfh~~~~e~~Aeal~~lG~~~alVV~G~eG~-  452 (548)
                      |||||.|||+|++++++|++||+||++|..+++   +||+++++||+||||++|.++|+++++++|+++++||||.||+ 
T Consensus        77 FlfAp~~hPamk~v~~vRk~Lg~rTiFN~lgPL---~NPa~~~~qliGv~~~~~~~~~a~~l~~lg~~~a~vv~G~dG~D  153 (273)
T d1o17a2          77 FLFAQYYHPAMKNVANVRKTLGIRTIFNILGPL---TNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGID  153 (273)
T ss_dssp             EEEHHHHCGGGGGTHHHHHHHCSCCGGGGCGGG---CCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEETTTBS
T ss_pred             EeeccccChHHHHHHHHHHHcCCCchhhhhhhc---cCCcCcceeeeccccHHHHHHHHHHHHhhcccceEEecCCcccc
Confidence            999999999999999999999999999999986   8999999999999999999999999999999999999999997 


Q ss_pred             -ccccCCeeEEEecCCceeEEeecCccCCCCCC----------cCCccHH-----------HHHHHhcHHHHHHHhcccC
Q 008923          453 -LSMTTRLRSVNASKGLPVNYCSGFRSLNVEST----------FEGDGLY-----------NLARLLNCLKFMYYISSIN  510 (548)
Q Consensus       453 -iS~~g~T~v~el~~G~~i~y~~~~~~~~~~~~----------~en~~il-----------~~~~~LNAAaaLyv~g~a~  510 (548)
                       +|++++|+||++++|.+.+|+++|+++++...          .+|+.++           +.+++||||++||++|+++
T Consensus       154 Eis~~g~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~l~gg~~~ena~~i~~il~G~~~~~~d~V~lNAA~aL~~~g~~~  233 (273)
T d1o17a2         154 EVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVG  233 (273)
T ss_dssp             SCCSSSEEEEEEEETTEEEEEEEEGGGGTCCCCCGGGTBCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             chhccccceeeecccccceeeeeehhhhcccccccccccccCchHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHcCCcC
Confidence             99999999999999977789999888876532          2454322           1456699999999999999


Q ss_pred             chhhhhhh
Q 008923          511 IVTSNLVL  518 (548)
Q Consensus       511 ~l~~g~~~  518 (548)
                      +|++|+.+
T Consensus       234 sl~eg~~~  241 (273)
T d1o17a2         234 DFREGYEY  241 (273)
T ss_dssp             SHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999875
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure