Citrus Sinensis ID: 008931

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQFSNSAQLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTMFFLLFGGFLHLIYKWGKATAFQAGSFSSDVESSDYDSGKGHQRQASACDFVTWYYGMGMALLAVIAPSLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLRGLEDRDTTTRLRSACFLC
ccccHHHHHHHHHHHHHcccccccccccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccEEEEcccccccccccccccccccEEEEEEccccEEEEEEEccccccccccHHHHccccccccccccccccccEEEEcccHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccEEEccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
ccccccEEEEEEEEcccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccEEEEEEEcccHHHHHHHHEEEEEEEEEEEEEEEccEEEEEcHHHHHHHcHHHHHccHHHccccccccHccccEEEEcccHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccHHHccccccHHHcccccEHHHHHHHHHHccHHccccccEEEEEEEEccccccccccccccEEEEEEcccccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEc
MKLIPKLLTFVLIALLSIQSraaigsqstDQAYVTLLYGDEFLLGVRVLGKsirdtgsnkDMVVLVSDGVSDYSKKLLKADGWIVEKISllenpnqvrpkrfwGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANlkhserlnsgvmvvepsaaVFNDMMTKVntlgsytggdqgflnsyysdfpnahvfepnlplevvntrpvpnmerlstlynADVGLYMLANKWMVDESELHVIHYtlgplkpwdwwtswllkpVDVWQDIRVKLEeslpgtgggtnpkdefAVKVLFLLPLCALLFCCYhsflqtrdhfgSFCRTSLGDHIRHLYFKVRSVGSvaytgvsssstinsnhqfsnsaqlkvpaylggSSIVVCFMVALVAFGIsfsivprqvmpwTGLLLVYEWTFTMFFLLFGGFLHLIYKWGkatafqagsfssdvessdydsgkghqrqasacDFVTWYYGMGMALLAVIapslpamfGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLrgledrdttTRLRSACFLC
MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKsirdtgsnkdmVVLVSDGVSDYSKKLLKADGWIVekisllenpnqvrpkrfWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLkhserlnsgvmVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEEslpgtgggtnpKDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQFSNSAQLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTMFFLLFGGFLHLIYKWGKATAFQAGSFSSDVESSDYDSGKGHQRQASACDFVTWYYGMGMALLAVIAPSLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYlrgledrdtttrlrsacflc
MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVlfllplcallfccYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQFSNSAQLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTMffllfggflhlIYKWGKATAFQAGSFSSDVESSDYDSGKGHQRQASACDFVTWYYGMGMALLAVIAPSLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLRGLEDRDTTTRLRSACFLC
***IPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESL*********KDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVS**************AQLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTMFFLLFGGFLHLIYKWGKATAFQA**********************SACDFVTWYYGMGMALLAVIAPSLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLRGLEDRDTTTRLRSACF**
***IPKLLTFVLIA******************YVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIR*****************DEFAVKVLFLLPLCALLFCCYHSFLQT***********LGDHIRHLYFKVRSVGS***TGV****************QLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTMFFLLFGGFLHLIYKWGKA***************************SACDFVTWYYGMGMALLAVIAPSLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLRGLED*****RLRSACFLC
MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQFSNSAQLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTMFFLLFGGFLHLIYKWGKATAFQAGS******************QASACDFVTWYYGMGMALLAVIAPSLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLRGLEDRDTTTRLRSACFLC
*KLIPKLLTFVLIALLSIQS*******STDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSST*********SAQLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTMFFLLFGGFLHLIYKWGKATAF************************SACDFVTWYYGMGMALLAVIAPSLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLRGLE******RLRSACFLC
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQFSNSAQLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTMFFLLFGGFLHLIYKWGKATAFQAGSFSSDVESSDYDSGKGHQRQASACDFVTWYYGMGMALLAVIAPSLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLRGLEDRDTTTRLRSACFLC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query548 2.2.26 [Sep-21-2011]
Q8GWB7537 Putative glucuronosyltran yes no 0.967 0.986 0.715 0.0
F4HZC3566 Putative UDP-glucuronate: no no 0.290 0.280 0.425 4e-29
Q9LSB1659 UDP-glucuronate:xylan alp no no 0.321 0.267 0.348 2e-28
Q8W4A7618 Putative UDP-glucuronate: no no 0.381 0.338 0.333 3e-28
F4JMI5494 Putative glucuronosyltran no no 0.437 0.485 0.330 3e-25
Q9FZ37557 Putative UDP-glucuronate: no no 0.290 0.285 0.395 7e-25
Q8VZP6497 Putative glucuronosyltran no no 0.467 0.515 0.305 9e-25
Q9R062333 Glycogenin-1 OS=Mus muscu yes no 0.388 0.639 0.317 1e-22
Q8GWW4596 UDP-glucuronate:xylan alp no no 0.377 0.347 0.294 2e-22
P46976350 Glycogenin-1 OS=Homo sapi yes no 0.385 0.602 0.315 2e-22
>sp|Q8GWB7|GUX6_ARATH Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1 Back     alignment and function desciption
 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/541 (71%), Positives = 438/541 (80%), Gaps = 11/541 (2%)

Query: 8   LTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVS 67
           L  +L+AL+SIQ   + GS+S+  AYVTLLYGDEFLLGVRVLGKSIRDTGS KDMV LVS
Sbjct: 8   LWVLLLALVSIQLNGSFGSESSKVAYVTLLYGDEFLLGVRVLGKSIRDTGSTKDMVALVS 67

Query: 68  DGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADT 127
           DGVSDYSKKLLKADGW VEKISLL NPNQV P RFWGVYTKLKIFNMT+YKKVVYLDADT
Sbjct: 68  DGVSDYSKKLLKADGWKVEKISLLANPNQVHPTRFWGVYTKLKIFNMTDYKKVVYLDADT 127

Query: 128 IVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFL 187
           IV+KNIEDLFKC KFCANLKHSERLNSGVMVVEPS A+FNDMM KV TL SYTGGDQGFL
Sbjct: 128 IVVKNIEDLFKCSKFCANLKHSERLNSGVMVVEPSEALFNDMMRKVKTLSSYTGGDQGFL 187

Query: 188 NSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVI 247
           NSYY DFPNA VF+P++  EV+ TRPVP MERLSTLYNADVGLYMLANKWMVD+S+LHVI
Sbjct: 188 NSYYPDFPNARVFDPSVTPEVLKTRPVPAMERLSTLYNADVGLYMLANKWMVDDSKLHVI 247

Query: 248 HYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVLFLLPLCA 307
           HYTLGPLKPWDWWT+WL+KPVD W  IRVKLEE+LPGTGGG+N  DE  VK LFLLPLCA
Sbjct: 248 HYTLGPLKPWDWWTAWLVKPVDAWHSIRVKLEETLPGTGGGSNQHDELVVKFLFLLPLCA 307

Query: 308 LLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQFSN 367
           LLFC Y S +Q R+  GS C +S  + IR+LY+KVRS G++ Y GVS+ S     H  S 
Sbjct: 308 LLFCIYRS-IQGRE--GSLCWSSFSNQIRYLYYKVRSNGTLGYGGVSTMSPSYQPH--SG 362

Query: 368 SAQLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTMFFLLFGG 427
           +AQ KVP +LG  S+VVCF   L++ GISF+IVPRQ+MPWTGL+LVYEWTFT+FFLLFG 
Sbjct: 363 NAQSKVPQHLGAVSVVVCFTAVLLSLGISFAIVPRQIMPWTGLVLVYEWTFTIFFLLFGV 422

Query: 428 FLHLIYKWGKATAFQAGSFSSDVESSDYDSGKGHQRQASACDFVTWYYGMGMALLAVIAP 487
           FL  +++ GK  A Q+ S S D      DS K HQR   +CD  T YYG+GMA LA+ A 
Sbjct: 423 FLLFVHQHGKRIAIQSESSSLD------DSAKVHQRAGGSCDVTTLYYGLGMAFLAIAAV 476

Query: 488 SLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLRGLEDRDTTTRLRSACFL 547
           SLP + G+TALF RLGLMV   I+LA+FMTYASEHLA+R +L+GLEDR  TTR  S CFL
Sbjct: 477 SLPYILGITALFTRLGLMVGLAIILAAFMTYASEHLAVRWFLKGLEDRRDTTRSNSLCFL 536

Query: 548 C 548
           C
Sbjct: 537 C 537

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|F4HZC3|GUX5_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 OS=Arabidopsis thaliana GN=GUX5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSB1|GUX1_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4A7|GUX3_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana GN=GUX3 PE=2 SV=1 Back     alignment and function description
>sp|F4JMI5|GUX7_ARATH Putative glucuronosyltransferase PGSIP7 OS=Arabidopsis thaliana GN=PGSIP7 PE=3 SV=1 Back     alignment and function description
>sp|Q9FZ37|GUX4_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1 Back     alignment and function description
>sp|Q8VZP6|GUX8_ARATH Putative glucuronosyltransferase PGSIP8 OS=Arabidopsis thaliana GN=PGSIP8 PE=2 SV=1 Back     alignment and function description
>sp|Q9R062|GLYG_MOUSE Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3 Back     alignment and function description
>sp|Q8GWW4|GUX2_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1 Back     alignment and function description
>sp|P46976|GLYG_HUMAN Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query548
356504117573 PREDICTED: uncharacterized protein LOC10 0.994 0.951 0.733 0.0
224123610546 predicted protein [Populus trichocarpa] 0.987 0.990 0.776 0.0
225453032546 PREDICTED: uncharacterized protein LOC10 0.979 0.983 0.771 0.0
357441423541 Glycogenin-1 [Medicago truncatula] gi|35 0.981 0.994 0.724 0.0
255561991 776 glycogenin, putative [Ricinus communis] 0.948 0.670 0.744 0.0
356573128549 PREDICTED: uncharacterized protein LOC10 0.968 0.967 0.734 0.0
356576725541 PREDICTED: uncharacterized protein LOC10 0.987 1.0 0.715 0.0
449470208545 PREDICTED: putative glucuronosyltransfer 0.932 0.937 0.736 0.0
167600648546 hypothetical protein 46C02.16 [Coffea ca 0.930 0.934 0.754 0.0
297812027538 hypothetical protein ARALYDRAFT_488728 [ 0.978 0.996 0.697 0.0
>gi|356504117|ref|XP_003520845.1| PREDICTED: uncharacterized protein LOC100800761 [Glycine max] Back     alignment and taxonomy information
 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/548 (73%), Positives = 467/548 (85%), Gaps = 3/548 (0%)

Query: 1   MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNK 60
           + L+   + F + +L       A  ++ TD+AYVTLLYGDEFLLGVRVLGKSIR+TGSNK
Sbjct: 29  IDLLSIFVKFSVESLCGPNGCVASKTKKTDEAYVTLLYGDEFLLGVRVLGKSIRNTGSNK 88

Query: 61  DMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKV 120
           DMVVLVSDGVSDY+K LL+ADGWIVE ISLL NPN+VRPKRFWGVYTKLKIFNMT+YKKV
Sbjct: 89  DMVVLVSDGVSDYAKSLLRADGWIVEMISLLANPNRVRPKRFWGVYTKLKIFNMTDYKKV 148

Query: 121 VYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYT 180
           VYLDADTIV++NI+DLFKC KFCANLKHSERLNSGVMVVEPSA +FNDMM+K+ T  SYT
Sbjct: 149 VYLDADTIVVRNIDDLFKCGKFCANLKHSERLNSGVMVVEPSATLFNDMMSKIKTTASYT 208

Query: 181 GGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVD 240
           GGDQGFLNSYYS FPNAHVFEPNL  EV+++RP+P MERLSTLYNADVGLYMLANKWMVD
Sbjct: 209 GGDQGFLNSYYSGFPNAHVFEPNLSSEVLSSRPIPEMERLSTLYNADVGLYMLANKWMVD 268

Query: 241 ESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVL 300
           E+EL VIHYTLGPLKPWDWWTSWLLKPVDVWQD+R +L+ESLPGTGGG NPKD F VK L
Sbjct: 269 ENELRVIHYTLGPLKPWDWWTSWLLKPVDVWQDVREQLDESLPGTGGGQNPKDSFLVKFL 328

Query: 301 FLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTIN 360
           FLLP CALLFCCYHSF + + +F + CR+SL D +RHLY+++RS G +AYT +S+S+T N
Sbjct: 329 FLLPFCALLFCCYHSFTKNQGYFSTLCRSSLCDQVRHLYYRIRSNGPLAYTSISASTT-N 387

Query: 361 SNHQFSNSAQLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTM 420
           S HQ  N AQ KVPAYLGG S+ VCFMVA+V+ G++  IVP+QVMPWTGLLL+YEWTFT+
Sbjct: 388 SVHQLLNGAQNKVPAYLGGISVCVCFMVAVVSLGLALLIVPQQVMPWTGLLLMYEWTFTI 447

Query: 421 FFLLFGGFLHLIYKWGKATAFQAGSFSSDVESSDYDSGKGHQRQASACDFVTWYYGMGMA 480
           FF+LFGG++HLIY+WGK    +A S S     SDYDS K HQRQ S+CD  TWYYG+GMA
Sbjct: 448 FFILFGGYIHLIYQWGKIVGSRAAS-SLSQPGSDYDSEKFHQRQISSCDSATWYYGLGMA 506

Query: 481 LLAVIAPSLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLRGLEDRDTTTR 540
           LLA+ APSLP +FG+TALFLRLGLMV GGI+LASFMTYASEHLAIRS+L+G+++RD   R
Sbjct: 507 LLAIAAPSLPCLFGITALFLRLGLMVVGGIILASFMTYASEHLAIRSFLKGIDERD-NAR 565

Query: 541 LRSACFLC 548
             S+CFLC
Sbjct: 566 NSSSCFLC 573

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123610|ref|XP_002319122.1| predicted protein [Populus trichocarpa] gi|222857498|gb|EEE95045.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453032|ref|XP_002266145.1| PREDICTED: uncharacterized protein LOC100248394 [Vitis vinifera] gi|302143640|emb|CBI22393.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357441423|ref|XP_003590989.1| Glycogenin-1 [Medicago truncatula] gi|355480037|gb|AES61240.1| Glycogenin-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255561991|ref|XP_002522004.1| glycogenin, putative [Ricinus communis] gi|223538808|gb|EEF40408.1| glycogenin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356573128|ref|XP_003554716.1| PREDICTED: uncharacterized protein LOC100810905 [Glycine max] Back     alignment and taxonomy information
>gi|356576725|ref|XP_003556480.1| PREDICTED: uncharacterized protein LOC100813990 [Glycine max] Back     alignment and taxonomy information
>gi|449470208|ref|XP_004152810.1| PREDICTED: putative glucuronosyltransferase PGSIP6-like [Cucumis sativus] gi|449477740|ref|XP_004155109.1| PREDICTED: putative glucuronosyltransferase PGSIP6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|167600648|gb|ABZ89190.1| hypothetical protein 46C02.16 [Coffea canephora] Back     alignment and taxonomy information
>gi|297812027|ref|XP_002873897.1| hypothetical protein ARALYDRAFT_488728 [Arabidopsis lyrata subsp. lyrata] gi|297319734|gb|EFH50156.1| hypothetical protein ARALYDRAFT_488728 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query548
TAIR|locus:2146173537 PGSIP6 "plant glycogenin-like 0.967 0.986 0.678 8.3e-193
WB|WBGene00011684449 T10B10.8 [Caenorhabditis elega 0.443 0.541 0.364 8.4e-42
TAIR|locus:2036024566 PGSIP5 "plant glycogenin-like 0.290 0.280 0.425 1.4e-28
TAIR|locus:2196020618 PGSIP2 "plant glycogenin-like 0.403 0.357 0.329 4.6e-28
TAIR|locus:2094014659 PGSIP1 "plant glycogenin-like 0.319 0.265 0.351 8.5e-27
ZFIN|ZDB-GENE-040426-2910329 gyg1a "glycogenin 1a" [Danio r 0.319 0.531 0.360 3.1e-26
MGI|MGI:1351614333 Gyg "glycogenin" [Mus musculus 0.321 0.528 0.364 3.5e-26
TAIR|locus:2130854494 PGSIP8 "AT4G16600" [Arabidopsi 0.436 0.483 0.335 1.2e-25
UNIPROTKB|P46976350 GYG1 "Glycogenin-1" [Homo sapi 0.321 0.502 0.353 1.4e-25
UNIPROTKB|F1SKC4331 GYG1 "Uncharacterized protein" 0.319 0.528 0.344 1.8e-25
TAIR|locus:2146173 PGSIP6 "plant glycogenin-like starch initiation protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1868 (662.6 bits), Expect = 8.3e-193, P = 8.3e-193
 Identities = 367/541 (67%), Positives = 418/541 (77%)

Query:     8 LTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVS 67
             L  +L+AL+SIQ   + GS+S+  AYVTLLYGDEFLLGVRVLGKSIRDTGS KDMV LVS
Sbjct:     8 LWVLLLALVSIQLNGSFGSESSKVAYVTLLYGDEFLLGVRVLGKSIRDTGSTKDMVALVS 67

Query:    68 DGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADT 127
             DGVSDYSKKLLKADGW VEKISLL NPNQV P RFWGVYTKLKIFNMT+YKKVVYLDADT
Sbjct:    68 DGVSDYSKKLLKADGWKVEKISLLANPNQVHPTRFWGVYTKLKIFNMTDYKKVVYLDADT 127

Query:   128 IVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFL 187
             IV+KNIEDLFKC KFCANLKHSERLNSGVMVVEPS A+FNDMM KV TL SYTGGDQGFL
Sbjct:   128 IVVKNIEDLFKCSKFCANLKHSERLNSGVMVVEPSEALFNDMMRKVKTLSSYTGGDQGFL 187

Query:   188 NSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVI 247
             NSYY DFPNA VF+P++  EV+ TRPVP MERLSTLYNADVGLYMLANKWMVD+S+LHVI
Sbjct:   188 NSYYPDFPNARVFDPSVTPEVLKTRPVPAMERLSTLYNADVGLYMLANKWMVDDSKLHVI 247

Query:   248 HYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVXXXXXXXX 307
             HYTLGPLKPWDWWT+WL+KPVD W  IRVKLEE+LPGTGGG+N  DE  VK         
Sbjct:   248 HYTLGPLKPWDWWTAWLVKPVDAWHSIRVKLEETLPGTGGGSNQHDELVVKFLFLLPLCA 307

Query:   308 XXXXXYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQFSN 367
                  Y S +Q R+  GS C +S  + IR+LY+KVRS G++ Y GVS+ S     H  S 
Sbjct:   308 LLFCIYRS-IQGRE--GSLCWSSFSNQIRYLYYKVRSNGTLGYGGVSTMSPSYQPH--SG 362

Query:   368 SAQLKVPAYLGGSSIVVCFMVALVAFGISFSIVPRQVMPWTGLLLVYEWTFTMXXXXXXX 427
             +AQ KVP +LG  S+VVCF   L++ GISF+IVPRQ+MPWTGL+LVYEWTFT+       
Sbjct:   363 NAQSKVPQHLGAVSVVVCFTAVLLSLGISFAIVPRQIMPWTGLVLVYEWTFTIFFLLFGV 422

Query:   428 XXXXIYKWGKATAFQAGSFSSDVESSDYDSGKGHQRQASACDFVTWYYGMGMALLAVIAP 487
                 +++ GK  A Q+ S S D      DS K HQR   +CD  T YYG+GMA LA+ A 
Sbjct:   423 FLLFVHQHGKRIAIQSESSSLD------DSAKVHQRAGGSCDVTTLYYGLGMAFLAIAAV 476

Query:   488 SLPAMFGVTALFLRLGLMVAGGIVLASFMTYASEHLAIRSYLRGLEDRDTTTRLRSACFL 547
             SLP + G+TALF RLGLMV   I+LA+FMTYASEHLA+R +L+GLEDR  TTR  S CFL
Sbjct:   477 SLPYILGITALFTRLGLMVGLAIILAAFMTYASEHLAVRWFLKGLEDRRDTTRSNSLCFL 536

Query:   548 C 548
             C
Sbjct:   537 C 537
GO:0005576 "extracellular region" evidence=ISM
GO:0009058 "biosynthetic process" evidence=ISS
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
WB|WBGene00011684 T10B10.8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2036024 PGSIP5 "plant glycogenin-like starch initiation protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196020 PGSIP2 "plant glycogenin-like starch initiation protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094014 PGSIP1 "plant glycogenin-like starch initiation protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2910 gyg1a "glycogenin 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1351614 Gyg "glycogenin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2130854 PGSIP8 "AT4G16600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P46976 GYG1 "Glycogenin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SKC4 GYG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GWB7GUX6_ARATH2, ., 4, ., 1, ., -0.71530.96710.9869yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00130489
hypothetical protein (547 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 2e-82
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 9e-25
PLN00176333 PLN00176, PLN00176, galactinol synthase 2e-17
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 4e-17
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 1e-13
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 2e-11
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 1e-07
pfam11051263 pfam11051, Mannosyl_trans3, Mannosyltransferase pu 6e-04
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information 
 Score =  256 bits (656), Expect = 2e-82
 Identities = 97/258 (37%), Positives = 136/258 (52%), Gaps = 34/258 (13%)

Query: 31  QAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISL 90
           +AYVTLL  D++L G  VLG S+R  GS+ D+VVLV+ GVS+ S++ L+  GWIV ++  
Sbjct: 1   EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEP 60

Query: 91  LENPNQVR---PKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRK-FCANL 146
           ++ P+        RF   YTKL+++N+T Y KVV+LDADT+V++NI++LF     F A  
Sbjct: 61  IDPPDSANLLKRPRFKDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAAP 120

Query: 147 KH--SERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNL 204
                +  NSGV V++PS   FND++  +    S+ GGDQG LNSY+SD           
Sbjct: 121 DCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGGDQGLLNSYFSDRGIWK------ 174

Query: 205 PLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWL 264
                         RL   YNA   L  L  + +    E+ V+H+  G  KPW WW    
Sbjct: 175 --------------RLPFTYNALKPLRYLHPEALWFGDEIKVVHFI-GGDKPWSWWRDPE 219

Query: 265 LK-------PVDVWQDIR 275
            K           W DI 
Sbjct: 220 TKEKDDYNELHQWWWDIY 237

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. Length = 240
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|220956 pfam11051, Mannosyl_trans3, Mannosyltransferase putative Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 548
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 99.98
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 99.97
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.97
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.97
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.96
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 99.95
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.95
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.93
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.9
PLN02523559 galacturonosyltransferase 99.88
PLN02718603 Probable galacturonosyltransferase 99.86
PLN02867535 Probable galacturonosyltransferase 99.84
PLN02769629 Probable galacturonosyltransferase 99.82
PLN02659534 Probable galacturonosyltransferase 99.81
PLN02870533 Probable galacturonosyltransferase 99.79
PLN02742534 Probable galacturonosyltransferase 99.78
PLN02829639 Probable galacturonosyltransferase 99.77
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.76
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.66
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 98.24
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 97.93
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 97.79
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 96.49
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 91.06
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 89.63
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 89.33
cd02515271 Glyco_transf_6 Glycosyltransferase family 6 compri 87.06
TIGR03111439 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 84.13
PRK11204420 N-glycosyltransferase; Provisional 82.49
PLN03181453 glycosyltransferase; Provisional 82.05
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 80.09
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information 
Probab=100.00  E-value=4.7e-40  Score=334.45  Aligned_cols=256  Identities=24%  Similarity=0.331  Sum_probs=187.1

Q ss_pred             eEEEEEEeCcchHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHH-------HHHcCCEEEEeeeecCCCCCCCccch
Q 008931           31 QAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKL-------LKADGWIVEKISLLENPNQVRPKRFW  103 (548)
Q Consensus        31 ~AyVtl~tdd~YL~~a~VLi~SL~~~~s~~dlVvIvtd~ls~e~~~~-------Lk~~g~~v~~I~~I~~p~~~~~~r~~  103 (548)
                      +||||++||++|+++++++++||++++|++|+|+++++++++...+.       +.+.++.++.++.+..+.  ...+|.
T Consensus         1 fAYvtl~Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~--~~~~~~   78 (278)
T cd06914           1 YAYVNYATNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIASG--GDAYWA   78 (278)
T ss_pred             CeEEEEecChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccCCC--CCccHH
Confidence            69999999999999999999999999999999999999988754332       233466666666544433  234566


Q ss_pred             hhhhhhhcccccCccEEEEEcCcccccCCchHhhcch-hh-hcccCCCCcccceEEEEeCCHHHHHHHHHHHHhcC--CC
Q 008931          104 GVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCR-KF-CANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLG--SY  179 (548)
Q Consensus       104 ~sy~KL~l~~L~eYdRVLYLDaDtLVl~dLDeLF~lp-~~-~Aav~~~~yFNSGVMLInps~~~f~~Ile~l~~~~--~~  179 (548)
                      .+|+||.+|++++||||||||+|++|++||||||++| .. .|+.....|||||||||||+.++++++++++.+..  +.
T Consensus        79 ~~~tKl~~~~l~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~Aap~~~~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~  158 (278)
T cd06914          79 KSLTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFLPNYIKFAAPRAYWKFASHLMVIKPSKEAFKELMTEILPAYLNKK  158 (278)
T ss_pred             HHHHHHHhccccceeeEEEecCChhhhcChHHHhcCCcccceeeecCcceecceeEEEeCCHHHHHHHHHHHHHhcccCC
Confidence            7899999999999999999999999999999999998 22 23333335999999999999999999999998753  33


Q ss_pred             CCChHHHHHHHhcCCCC----CcccCCCCccccccCCCCCCcccccccccccccccccccccccCC--CCcEEEEeeCCC
Q 008931          180 TGGDQGFLNSYYSDFPN----AHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDE--SELHVIHYTLGP  253 (548)
Q Consensus       180 ~~~DQDiLN~~f~d~~~----~~lf~P~~~~~l~~~~p~~~~~rLp~~YN~~~~~Y~~~~~w~~~~--~~~~IIHFt~Gp  253 (548)
                      .++|||+||.+|.++.+    ..+++||+.+++++..-- +-..-...+|.+    ...++|+++.  +++++||||++|
T Consensus       159 ~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r-~~~~~~~l~~~~----~~~~~w~~~~~~~~~k~vHFSd~P  233 (278)
T cd06914         159 NEYDMDLINEEFYNSKQLFKPSVLVLPHRQYGLLTGEFR-EKLHKSFLSNAQ----HLYEKWDPDDVFKESKVIHFSDSP  233 (278)
T ss_pred             CCCChHHHHHHHhCCccccCcceEEcCccccccCChhhc-ccCHHHhhcccc----ccccccCHHHHHhhCeEEEecCCC
Confidence            67899999999999721    125677766665542000 000001111211    1235677644  899999999999


Q ss_pred             C-CCCCCCccCCCCchhHHHHHHHHhhhcCCCCCCCCCCcchHHHHHH
Q 008931          254 L-KPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVL  300 (548)
Q Consensus       254 ~-KPW~~w~~~~~~~~~lW~~ir~~lee~~pg~~gg~~~~~~~i~k~l  300 (548)
                      . |||..++.      +.+.+..+.+.. .++..++.+|+++.+|+-+
T Consensus       234 l~KPW~~~~~------~~~~~~~~~~~~-~~~~~~~~~c~~~~iW~~~  274 (278)
T cd06914         234 LPKPWNYNNL------EDIYCIEKIYCK-MVKPRLEDDCRACDLWNSL  274 (278)
T ss_pred             CCCCcCCcCH------HHHHHhCCcccc-CCCCCccCcchHHHHHHHH
Confidence            7 99999976      344444444321 2345667899999999865

N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
>PLN00176 galactinol synthase Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens Back     alignment and domain information
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 Back     alignment and domain information
>PRK11204 N-glycosyltransferase; Provisional Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
1zcy_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 9e-24
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 1e-23
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 1e-23
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 1e-23
1zcv_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 1e-23
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 1e-23
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 1e-23
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 2e-23
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 2e-23
1ll0_A339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 2e-23
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 3e-23
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 4e-23
1zcu_A353 Apo Form Of The 162s Mutant Of Glycogenin Length = 1e-22
1ll2_A333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 2e-22
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (269), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 128/245 (52%), Gaps = 30/245 (12%)
Query: 25  GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
           GS  TDQA+VTL   D +  G  VLG S++   +++ + VL +  VSD  +K L+     
Sbjct: 18  GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 77
Query: 85  VEKISLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
           V  + +L++ +        RP+   GV  TKL  +++T Y K V++DADT+V+ NI+DLF
Sbjct: 78  VITVDILDSGDSAHLTLMKRPE--LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
           +  +  A  +    +  NSGV V +PS   +N ++   +  GS++GGDQG LN++++ + 
Sbjct: 136 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWA 195
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
              +   +LP                 +YN + + +Y     +    +   V+H+ LG  
Sbjct: 196 TTDI-RKHLPF----------------IYNLSSISIYSYLPAFKAFGANAKVVHF-LGQT 237
Query: 255 KPWDW 259
           KPW++
Sbjct: 238 KPWNY 242
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 7e-53
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 1e-51
3tzt_A276 Glycosyl transferase family 8; structural genomics 7e-13
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
 Score =  182 bits (461), Expect = 7e-53
 Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 26/249 (10%)

Query: 29  TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKI 88
           TDQA+VTL   D +  G  VLG S++   +++ + VL +  VSD  +K L+     V  +
Sbjct: 2   TDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITV 61

Query: 89  SLLENPNQVRPKRF-----WGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFC 143
            +L++ +                TKL  +++T Y K V++DADT+V+ NI+DLF+  +  
Sbjct: 62  DILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELS 121

Query: 144 A--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFE 201
           A  +    +  NSGV V +PS   +N ++   +  GS+ GGDQG LN++++ +       
Sbjct: 122 AAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATT---- 177

Query: 202 PNLPLEVVNTRPVPNMERLSTLYNAD-VGLYMLANKWMVDESELHVIHYTLGPLKPWDWW 260
                           + L  +YN   + +Y     +    +   V+H+  G  KPW++ 
Sbjct: 178 -------------DIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFL-GQTKPWNYT 223

Query: 261 TSWLLKPVD 269
                K V 
Sbjct: 224 YDTKTKSVR 232
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query548
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 99.97
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 99.97
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=2.6e-40  Score=333.14  Aligned_cols=214  Identities=33%  Similarity=0.566  Sum_probs=180.3

Q ss_pred             CCeEEEEEEeCcchHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCEEEEeeeecCCCC-----CCCccch
Q 008931           29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQ-----VRPKRFW  103 (548)
Q Consensus        29 sr~AyVtl~tdd~YL~~a~VLi~SL~~~~s~~dlVvIvtd~ls~e~~~~Lk~~g~~v~~I~~I~~p~~-----~~~~r~~  103 (548)
                      +++||||+++|++|++++.|+++||++++++++++++++++++++.++.|++.+.++++|+.++.+..     ....++.
T Consensus         3 ~~~AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~~   82 (263)
T 3u2u_A            3 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPELG   82 (263)
T ss_dssp             TTEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTGG
T ss_pred             cceEEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcchh
Confidence            48999999999999999999999999999999999999999999999999999999888887764321     1112356


Q ss_pred             hhhhhhhcccccCccEEEEEcCcccccCCchHhhcchhhhcc--cCCCCcccceEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 008931          104 GVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCAN--LKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTG  181 (548)
Q Consensus       104 ~sy~KL~l~~L~eYdRVLYLDaDtLVl~dLDeLF~lp~~~Aa--v~~~~yFNSGVMLInps~~~f~~Ile~l~~~~~~~~  181 (548)
                      .+|+||.+|++++||||||||+|++|++||||||+++.++|.  .++++|||||||||||+...++++++.+.+.+++.+
T Consensus        83 ~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~~~  162 (263)
T 3u2u_A           83 VTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDG  162 (263)
T ss_dssp             GGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCTTS
T ss_pred             HHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCCCc
Confidence            799999999999999999999999999999999999977664  356799999999999999999999999988778889


Q ss_pred             ChHHHHHHHhcCCCCCcccCCCCccccccCCCCCCccccccccccccc-ccccccccccCCCCcEEEEeeCCCCCCCCCC
Q 008931          182 GDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVG-LYMLANKWMVDESELHVIHYTLGPLKPWDWW  260 (548)
Q Consensus       182 ~DQDiLN~~f~d~~~~~lf~P~~~~~l~~~~p~~~~~rLp~~YN~~~~-~Y~~~~~w~~~~~~~~IIHFt~Gp~KPW~~w  260 (548)
                      +|||+||.+|+++..                + .++.+||..||++.. .|...+.|....++++||||+ |+.|||+..
T Consensus       163 ~DQd~LN~~f~~w~~----------------~-~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~-g~~KPW~~~  224 (263)
T 3u2u_A          163 GDQGILNTFFSSWAT----------------T-DIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFL-GRVKPWNYT  224 (263)
T ss_dssp             SHHHHHHHHTTTTTT----------------S-CGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECC-SSSCGGGSE
T ss_pred             ccHHHHHHHhccccc----------------c-CeeEeCCcccccccchhccccHHHHhhcCCeEEEEEC-CCCcCCCCC
Confidence            999999999998521                0 046889999999764 232233333345789999996 889999963
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 548
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 2e-44
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 4e-15
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  155 bits (393), Expect = 2e-44
 Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 26/248 (10%)

Query: 29  TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKI 88
           TDQA+VTL   D +  G  VLG S++   +++ + VL +  VSD  +K L+     V  +
Sbjct: 2   TDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITV 61

Query: 89  SLLENP-----NQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFC 143
            +L++        ++        TKL  +++T Y K V++DADT+V+ NI+DLF+  +  
Sbjct: 62  DILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELS 121

Query: 144 A--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFE 201
           A  +    +  NSGV V +PS   +N ++   +  GS+ GGDQG LN++++ +       
Sbjct: 122 AAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATT---- 177

Query: 202 PNLPLEVVNTRPVPNMERLSTLYNA-DVGLYMLANKWMVDESELHVIHYTLGPLKPWDWW 260
                           + L  +YN   + +Y     +    +   V+H+  G  KPW++ 
Sbjct: 178 -------------DIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFL-GQTKPWNYT 223

Query: 261 TSWLLKPV 268
                K V
Sbjct: 224 YDTKTKSV 231
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query548
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 99.97
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 94.84
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 93.87
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.5e-37  Score=305.91  Aligned_cols=214  Identities=31%  Similarity=0.525  Sum_probs=177.3

Q ss_pred             CCeEEEEEEeCcchHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCEEEEeeeecCCCCC-----CCccch
Q 008931           29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQV-----RPKRFW  103 (548)
Q Consensus        29 sr~AyVtl~tdd~YL~~a~VLi~SL~~~~s~~dlVvIvtd~ls~e~~~~Lk~~g~~v~~I~~I~~p~~~-----~~~r~~  103 (548)
                      ++.||||+++|++|++++.|+++||++++++++++++++++++++.++.|++.+..++.++.++.+...     ...++.
T Consensus         2 ~~~A~vt~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~   81 (263)
T d1ll2a_           2 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELG   81 (263)
T ss_dssp             CSEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGGH
T ss_pred             CccEEEEEEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccch
Confidence            478999999999999999999999999999999999999999999999999999888787776544322     123345


Q ss_pred             hhhhhhhcccccCccEEEEEcCcccccCCchHhhcchhhhcc--cCCCCcccceEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 008931          104 GVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCAN--LKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTG  181 (548)
Q Consensus       104 ~sy~KL~l~~L~eYdRVLYLDaDtLVl~dLDeLF~lp~~~Aa--v~~~~yFNSGVMLInps~~~f~~Ile~l~~~~~~~~  181 (548)
                      .+|+||++|++++||||||||+|+||++||||||+.+...|.  .....|||||||++||++++++++.+.+.+...+.+
T Consensus        82 ~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~~~~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~~  161 (263)
T d1ll2a_          82 VTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDG  161 (263)
T ss_dssp             HHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTTS
T ss_pred             hhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCccceeccCCCcccccCCcEEECccHHHHHHHHHHHHhhCCCCh
Confidence            799999999999999999999999999999999999876554  356789999999999999999999999988877888


Q ss_pred             ChHHHHHHHhcCCCCCcccCCCCccccccCCCCCCccccccccccccccc-ccccccccCCCCcEEEEeeCCCCCCCCCC
Q 008931          182 GDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLY-MLANKWMVDESELHVIHYTLGPLKPWDWW  260 (548)
Q Consensus       182 ~DQDiLN~~f~d~~~~~lf~P~~~~~l~~~~p~~~~~rLp~~YN~~~~~Y-~~~~~w~~~~~~~~IIHFt~Gp~KPW~~w  260 (548)
                      .||+++|..+.+..    +.             ..+..|+..||...... .....+....++++||||+ |+.|||+..
T Consensus       162 ~dq~~ln~~~~~~~----~~-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iIHf~-g~~KPW~~~  223 (263)
T d1ll2a_         162 GDQGLLNTFFNSWA----TT-------------DIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFL-GQTKPWNYT  223 (263)
T ss_dssp             SHHHHHHHHTTTTT----TS-------------CGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECC-SSCCGGGSC
T ss_pred             hhhhHHHHHHHhhh----cc-------------CcccccCHHHhhhhhhhhhhhHhHHhhcCCeEEEEeC-CCCCCCCCC
Confidence            99999999998852    11             14678888998864322 1122233356789999996 888999864
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure