Citrus Sinensis ID: 008940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
Protein Sequence
MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHcccccccEEEEccEEEcHHHHHHccccHHHHHHHcccccccccccEEEccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHcHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHcccccccccccccEEcccEEccccccccEEEEEccccEHHHHHHHHHcHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MDSNCSRAVNSVIRRAADAITNlahenssiktrvrmeggipplvelLEFTDTKVQRAAAGALRTLafkndenknqivecnALPTLILMLRSEDSAIHYEAVGVIGnlvhsspnikKEVLAAGALQPVIGLLSSCCSESQREAALLLGQfaatdsdckvhivqrgavrpliemlqspdvqLREMSAFALGRLAQDMHNqagiahngglvPLLKlldskngslqhNAAFALygladnednvADFIRVggvqklqdgEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHlcspddqrtifiDGGGLELLLGLlgstnpkqqLDGAVALFKLANkattlssvdaappsptpqvylgdqfvnnatlsdvtfLVEGRRFYAHRICLLASSDAFRAMFdggyrekdardieipnIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHfdklstrpghsnlIQRIIPEIHNYFAKaltkpnphnsrl
Flexible Loop (DISEMBL)
MDSNCSRAVNSVIRRAADaitnlahenssiktrvrmEGGIPPLVELLEFTDTKVQRAAAGALRtlafkndenknqiVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGgyrekdardieiPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKaltkpnphnsrl
Low Complexity Region (SEG)
MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDggglelllgllgSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL
Disordered region (IsUnstruct)
***********VIRRAADAITNLAH****IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT**************QVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKAL**********
Disordered Region (DISOPRED)
***************AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAK************
Disordered Region (DISEMBL)
********VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL
Disordered Region (DISPRO)
******RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTK********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHNSRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	548	2.2.26 [Sep-21-2011]
B9DHT4	710	ARM REPEAT PROTEIN INTERA	yes	no	0.874	0.674	0.868	0.0
B7U179	737	ARMADILLO BTB ARABIDOPSIS	no	no	0.885	0.658	0.676	0.0
O08764	1009	Ankyrin repeat and BTB/PO	yes	no	0.346	0.188	0.291	2e-19
Q7TQI7	1024	Ankyrin repeat and BTB/PO	yes	no	0.363	0.194	0.295	2e-19
Q9VFP2	829	Protein roadkill OS=Droso	no	no	0.381	0.252	0.310	3e-19
P0CM60	630	Vacuolar protein 8 OS=Cry	yes	no	0.613	0.533	0.292	3e-19
P0CM61	630	Vacuolar protein 8 OS=Cry	N/A	no	0.613	0.533	0.292	3e-19
Q8N961	839	Ankyrin repeat and BTB/PO	yes	no	0.363	0.237	0.285	5e-19
Q6IQ16	392	Speckle-type POZ protein-	no	no	0.344	0.482	0.311	1e-18
Q7RXW1	578	Vacuolar protein 8 OS=Neu	N/A	no	0.543	0.515	0.286	4e-18

>sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/539 (86%), Positives = 507/539 (94%)

Query: 2   DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 61
           D + SRAVNSVIRRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF+D+KVQRAAAGA
Sbjct: 162 DGSSSRAVNSVIRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGA 221

Query: 62  LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121
           LRTLAFKND+NKNQIVECNALPTLILML SED+AIHYEAVGVIGNLVHSSP+IKKEVL A
Sbjct: 222 LRTLAFKNDDNKNQIVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTA 281

Query: 122 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 181
           GALQPVIGLLSSCC ESQREAALLLGQFA+TDSDCKVHIVQRGAVRPLIEMLQSPDVQL+
Sbjct: 282 GALQPVIGLLSSCCPESQREAALLLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLK 341

Query: 182 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 241
           EMSAFALGRLAQD HNQAGIAH+GGL PLLKLLDS+NGSLQHNAAFALYGLADNEDNV+D
Sbjct: 342 EMSAFALGRLAQDAHNQAGIAHSGGLGPLLKLLDSRNGSLQHNAAFALYGLADNEDNVSD 401

Query: 242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 301
           FIRVGG+QKLQDGEFIVQATKDCV+KTLKRLEEKIHGRVL HLLYLMR++EK +QRRVAL
Sbjct: 402 FIRVGGIQKLQDGEFIVQATKDCVSKTLKRLEEKIHGRVLRHLLYLMRISEKSIQRRVAL 461

Query: 302 ALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAP 361
           ALAHLCSP+DQRTIFID  GLELLLGLLGS N KQQLDGA AL+KLANK+  LS VDAAP
Sbjct: 462 ALAHLCSPEDQRTIFIDDNGLELLLGLLGSLNTKQQLDGAAALYKLANKSMALSPVDAAP 521

Query: 362 PSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD 421
           PSPT +VYLG+Q+VNNATLSDVTFLVEGR FYAHRICLLASSDAFRAMFDGGYREKDARD
Sbjct: 522 PSPTQRVYLGEQYVNNATLSDVTFLVEGRTFYAHRICLLASSDAFRAMFDGGYREKDARD 581

Query: 422 IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 481
           IEIPNI+WEVFELMMRFIYTGSVD+T +I++DLLRAADQYLLEGLKRLCEYTIAQDI+LE
Sbjct: 582 IEIPNIKWEVFELMMRFIYTGSVDITNEISKDLLRAADQYLLEGLKRLCEYTIAQDITLE 641

Query: 482 NVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTK 540
           ++  MYELSEAFHA+SLR  CI++I+EHFDKLS+ P  + L+QR IPEI  YF +ALTK
Sbjct: 642 SIGDMYELSEAFHAMSLRQACIMFILEHFDKLSSMPWQNELVQRTIPEIREYFCRALTK 700

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. Negative regulator of seed germination and young seedling growth.
Arabidopsis thaliana (taxid: 3702)

>sp|B7U179|ABAP1_ARATH ARMADILLO BTB ARABIDOPSIS PROTEIN 1 OS=Arabidopsis thaliana GN=ABAP1 PE=1 SV=1

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/532 (67%), Positives = 443/532 (83%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 69
           N+VIRRAAD ITN+AH+N  IKT +R+EGGI PLVELL F D KVQRAAAGALRT++F+N
Sbjct: 197 NAVIRRAADIITNIAHDNPRIKTNIRVEGGIAPLVELLNFPDVKVQRAAAGALRTVSFRN 256

Query: 70  DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 129
           DENK+QIVE NALPTL+LML+S+DS +H EA+G IGNLVHSSP+IKKEV+ AGALQPVIG
Sbjct: 257 DENKSQIVELNALPTLVLMLQSQDSTVHGEAIGAIGNLVHSSPDIKKEVIRAGALQPVIG 316

Query: 130 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 189
           LLSS C E+QREAALL+GQFAA DSDCKVHI QRGA+ PLI+ML+S D Q+ EMSAFALG
Sbjct: 317 LLSSTCLETQREAALLIGQFAAPDSDCKVHIAQRGAITPLIKMLESSDEQVVEMSAFALG 376

Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 249
           RLAQD HNQAGIAH GG++ LL LLD K GS+QHNAAFALYGLADNE+NVADFI+ GG+Q
Sbjct: 377 RLAQDAHNQAGIAHRGGIISLLNLLDVKTGSVQHNAAFALYGLADNEENVADFIKAGGIQ 436

Query: 250 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 309
           KLQD  F VQ T+DCV +TLKRL+ KIHG VLN LLYLMR AEK VQ R+ALALAHLC P
Sbjct: 437 KLQDDNFTVQPTRDCVVRTLKRLQNKIHGPVLNQLLYLMRTAEKTVQIRIALALAHLCDP 496

Query: 310 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVY 369
            D + IFID  G+E LL LL  ++ KQQ   + AL++LA KAT+ +  D+AP SPT QV+
Sbjct: 497 KDGKLIFIDNNGVEFLLELLYFSSNKQQRYSSSALYELAKKATSFAPEDSAPCSPTQQVF 556

Query: 370 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRW 429
           LG++FVNN T+SDVTFL++G++FYAH+I L+ASSD FRAMFDG Y+E++A+++EIPNIRW
Sbjct: 557 LGEKFVNNPTMSDVTFLIDGKQFYAHKIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRW 616

Query: 430 EVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL 489
           EVFELMM+FIY+G +++   +A+DLL AADQYLLEGLKR CEYTIAQ+I L+N+  MYEL
Sbjct: 617 EVFELMMKFIYSGRINIAKHLAKDLLVAADQYLLEGLKRQCEYTIAQEICLDNIPEMYEL 676

Query: 490 SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKP 541
           ++ F+A +LR  C L+++EHF KLS++   +  +++IIPEI +Y    LT+P
Sbjct: 677 ADTFNASALRRACTLFVLEHFTKLSSQLWFAKFVKQIIPEIRSYMTDILTRP 728

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). In association with TCP24, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication.

Arabidopsis thaliana (taxid: 3702)

>sp|O08764|ABTB2_RAT Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Rattus norvegicus GN=Abtb2 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 108/199 (54%), Gaps = 9/199 (4%)

Query: 321 GLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATL 380
           GL+L+  +L ++     L     +F      + + S+       T    L   F+NN  +
Sbjct: 785 GLQLMFDILKTSKNDSVLQQLATIFTHCYGTSPIPSIPEI--RKTLPARLDPHFLNNKEM 842

Query: 381 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRF 438
           SDVTFLVEG+ FYAH++ L+ +S+ F+ +      +   +++ IEI +I++ +F+++M++
Sbjct: 843 SDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDNSKTIEISDIKYHIFQMLMQY 902

Query: 439 IYTGSVDV----TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFH 494
           +Y G  +     T DI Q LL AA+ + L+ L+R CE   +Q +S+E+  + Y+ ++  +
Sbjct: 903 LYYGGTESMEIPTADILQ-LLSAANLFQLDALQRHCEILCSQTLSVESAVNTYKYAKIHN 961

Query: 495 AISLRHTCILYIMEHFDKL 513
           A  L   C  + ++H   L
Sbjct: 962 APELALFCEGFFLKHMKAL 980

May be involved in the initiation of hepatocyte growth.

Rattus norvegicus (taxid: 10116)

>sp|Q7TQI7|ABTB2_MOUSE Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Mus musculus GN=Abtb2 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 112/210 (53%), Gaps = 11/210 (5%)

Query: 321 GLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATL 380
           GL+L+  +L ++     L     +F      + + S+       T    L   F+NN  +
Sbjct: 786 GLQLMFDILKTSKNDSVLQQLATIFTHCYGTSPIPSIPEI--RKTLPARLDPHFLNNKEM 843

Query: 381 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD---ARDIEIPNIRWEVFELMMR 437
           SDVTFLVEG+ FYAH++ L+ +S+ F+ +      E+D   ++ IEI +I++ +F+++M+
Sbjct: 844 SDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNK-SEQDGDSSKTIEISDIKYHIFQMLMQ 902

Query: 438 FIYTGSVDV----TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 493
           ++Y G  +     T DI Q LL AA+ + L+ L+R CE   +Q +S+E+  + Y+ ++  
Sbjct: 903 YLYYGGTESMEIPTADILQ-LLSAANLFQLDALQRHCEILCSQTLSVESAVNTYKYAKIH 961

Query: 494 HAISLRHTCILYIMEHFDKLSTRPGHSNLI 523
           +A  L   C  + ++H   L  +     LI
Sbjct: 962 NAPELALFCEGFFLKHMKALLEQDAFRQLI 991

May be involved in the initiation of hepatocyte growth.

Mus musculus (taxid: 10090)

>sp|Q9VFP2|RDX_DROME Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 23/232 (9%)

Query: 292 EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351
           +K ++R   L  A+   P+D+ TIF +   +   + + G +N        +  FK+    
Sbjct: 589 KKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSN--------IVQFKV---- 636

Query: 352 TTLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFD 411
                     P       LG+ F +N   SDVT  V GR F AH+  L A SD F AMF+
Sbjct: 637 ----------PECKLSEDLGNLF-DNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFE 685

Query: 412 GGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
               E+    + I ++  EV + M+RFIYTG       +A DLL AAD+Y LE LK +CE
Sbjct: 686 HEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCE 745

Query: 472 YTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 523
             +  ++S+E  +    L++   A  L+   I +I  H   +    G  N+I
Sbjct: 746 EALCVNLSVETAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMI 797

Involved in segment polarity. In complex with gft/CUL3, promotes ubiquitination of ci and its subsequent degradation by the proteasome, which results in hh signaling attenuation. This regulation may be important during eye formation for proper packing of ommatidia into an hexagonal array.

Drosophila melanogaster (taxid: 7227)

>sp|P0CM60|VAC8_CRYNJ Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=VAC8 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 169/352 (48%), Gaps = 16/352 (4%)

Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
           V R A+ A+ NLA  N+  K  V   GG+ PL+  +   + +VQ  A G +  LA  +DE
Sbjct: 102 VQRAASAALGNLAV-NAENKLLVVSLGGLEPLIRQMLSPNVEVQCNAVGCITNLA-THDE 159

Query: 72  NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
           NK QI +  AL  L  + +S+D  +   A G + N+ HS  N +++++AAGA+  ++ LL
Sbjct: 160 NKTQIAKSGALVPLTRLAKSKDMRVQRNATGALLNMTHSDEN-RQQLVAAGAIPVLVSLL 218

Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGA--VRPLIEMLQSPDVQLREMSAFALG 189
           +S  ++ Q      L   A  D+  +  + Q     V+ L++++ S  ++++  +A AL 
Sbjct: 219 NSPDTDVQYYCTTALSNIA-VDAANRKKLAQSEPKLVQSLVQLMDSQSLKVQCQAALALR 277

Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 249
            LA D   Q  I   GGL PLL+LL S    L  +AA  +  ++ +  N +  I  G +Q
Sbjct: 278 NLASDSKYQLEIVKFGGLKPLLRLLHSSYLPLILSAAACVRNVSIHPANESPIIESGFLQ 337

Query: 250 KLQ-----DGEFIVQATKDCVAKTLKRLEEKIHGRV-----LNHLLYLMRVAEKGVQRRV 299
            L      D    VQ       + L    EK  G +     +  +  L+      VQ  +
Sbjct: 338 PLIELLSFDENEEVQCHAISTLRNLAASSEKNKGAIVEAGAVEKIKSLVLTVPLAVQSEM 397

Query: 300 ALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351
              +A L   DD +   ++ G  E+L+ L  S + + Q + A AL  L++KA
Sbjct: 398 TACVAVLALSDDLKPQLLEMGICEVLIPLTNSPSVEVQGNSAAALGNLSSKA 449

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM61|VAC8_CRYNB Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=VAC8 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 169/352 (48%), Gaps = 16/352 (4%)

Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
           V R A+ A+ NLA  N+  K  V   GG+ PL+  +   + +VQ  A G +  LA  +DE
Sbjct: 102 VQRAASAALGNLAV-NAENKLLVVSLGGLEPLIRQMLSPNVEVQCNAVGCITNLA-THDE 159

Query: 72  NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
           NK QI +  AL  L  + +S+D  +   A G + N+ HS  N +++++AAGA+  ++ LL
Sbjct: 160 NKTQIAKSGALVPLTRLAKSKDMRVQRNATGALLNMTHSDEN-RQQLVAAGAIPVLVSLL 218

Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGA--VRPLIEMLQSPDVQLREMSAFALG 189
           +S  ++ Q      L   A  D+  +  + Q     V+ L++++ S  ++++  +A AL 
Sbjct: 219 NSPDTDVQYYCTTALSNIA-VDAANRKKLAQSEPKLVQSLVQLMDSQSLKVQCQAALALR 277

Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 249
            LA D   Q  I   GGL PLL+LL S    L  +AA  +  ++ +  N +  I  G +Q
Sbjct: 278 NLASDSKYQLEIVKFGGLKPLLRLLHSSYLPLILSAAACVRNVSIHPANESPIIESGFLQ 337

Query: 250 KLQ-----DGEFIVQATKDCVAKTLKRLEEKIHGRV-----LNHLLYLMRVAEKGVQRRV 299
            L      D    VQ       + L    EK  G +     +  +  L+      VQ  +
Sbjct: 338 PLIELLSFDENEEVQCHAISTLRNLAASSEKNKGAIVEAGAVEKIKSLVLTVPLAVQSEM 397

Query: 300 ALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351
              +A L   DD +   ++ G  E+L+ L  S + + Q + A AL  L++KA
Sbjct: 398 TACVAVLALSDDLKPQLLEMGICEVLIPLTNSPSVEVQGNSAAALGNLSSKA 449

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q8N961|ABTB2_HUMAN Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Homo sapiens GN=ABTB2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 112/210 (53%), Gaps = 11/210 (5%)

Query: 321 GLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNATL 380
           GL+L+  +L ++     +     +F     ++ + S+       T    L   F+NN  +
Sbjct: 601 GLQLMFDILKTSKNDSVIQQLATIFTHCYGSSPIPSIPEI--RKTLPARLDPHFLNNKEM 658

Query: 381 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD---ARDIEIPNIRWEVFELMMR 437
           SDVTFLVEG+ FYAH++ L+ +S+ F+ +      E+D   ++ IEI ++++ +F++MM+
Sbjct: 659 SDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNK-SEQDGDSSKTIEISDMKYHIFQMMMQ 717

Query: 438 FIYTGSVDV----TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 493
           ++Y G  +     T DI + LL AA  + L+ L+R CE   +Q +S+E+  + Y+ ++  
Sbjct: 718 YLYYGGTESMEIPTTDILE-LLSAASLFQLDALQRHCEILCSQTLSMESAVNTYKYAKIH 776

Query: 494 HAISLRHTCILYIMEHFDKLSTRPGHSNLI 523
           +A  L   C  + ++H   L  +     LI
Sbjct: 777 NAPELALFCEGFFLKHMKALLEQDAFRQLI 806

May be involved in the initiation of hepatocyte growth.

Homo sapiens (taxid: 9606)

>sp|Q6IQ16|SPOPL_HUMAN Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 29/218 (13%)

Query: 292 EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351
           +K ++R   L  A+   PDD+ T+F +   ++  + + G TN                  
Sbjct: 134 KKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGHTN-----------------T 176

Query: 352 TTLSSVDAAPPSPTPQVYLGDQFVN---NATLSDVTFLVEGRRFYAHRICLLASSDAFRA 408
            TL           P+  L +   N   N   +D +F V G+ F AH+  L A S  F A
Sbjct: 177 NTLK---------VPECRLAEDLGNLWENTRFTDCSFFVRGQEFKAHKSVLAARSPVFNA 227

Query: 409 MFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKR 468
           MF+    E     +EI ++  EVF+ MMRFIYTG       +A +LL AAD+Y LE LK 
Sbjct: 228 MFEHEMEESKKNRVEINDLDPEVFKEMMRFIYTGRAPNLDKMADNLLAAADKYALERLKV 287

Query: 469 LCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYI 506
           +CE  +  ++S+ENV+    L++   A  L+   I +I
Sbjct: 288 MCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFI 325

In complex with a cullin, may act in ubiquitination and proteasomal degradation processes.

Homo sapiens (taxid: 9606)

>sp|Q7RXW1|VAC8_NEUCR Vacuolar protein 8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=vac-8 PE=3 SV=3

 Score = 93.6 bits (231), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 154/339 (45%), Gaps = 41/339 (12%)

Query: 16  AADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 74
           A   ITNLA HE++  K ++   G + PL  L +  D +VQR A GAL  +   +DEN+ 
Sbjct: 167 AVGCITNLATHEDN--KAKIARSGALGPLTRLAKSRDMRVQRNATGALLNMTH-SDENRQ 223

Query: 75  QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSS 133
           Q+V   A+P L+ +L S D  + Y     + N+   + N +K       L Q ++ L+ S
Sbjct: 224 QLVNAGAIPVLVQLLSSTDVDVQYYCTTALSNIAVDANNRRKLAQTEPRLVQSLVNLMDS 283

Query: 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193
              + Q +AAL L    A+D   ++ IV+   + PL+ +LQS  + L   +   +  ++ 
Sbjct: 284 SSPKVQCQAALALRNL-ASDEKYQLEIVRASGLGPLLRLLQSSYLPLILSAVACIRNISI 342

Query: 194 DMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNED-NVADFIRVGGVQKL 251
              N++ I   G L PL+ LL S  N  +Q +A   L  LA + D N A  +  G VQK 
Sbjct: 343 HPMNESPIIEAGFLKPLVDLLGSTDNEEIQCHAISTLRNLAASSDRNKALVLEAGAVQKC 402

Query: 252 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 311
           +     V  T                                 VQ  +  A+A L   D+
Sbjct: 403 KQLVLEVPVT---------------------------------VQSEMTAAIAVLALSDE 429

Query: 312 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350
            +T  ++ G  E+L+ L  S + + Q + A AL  L++K
Sbjct: 430 LKTNLLELGVFEVLIPLTKSPSIEVQGNSAAALGNLSSK 468

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	548
255552325	719	protein binding protein, putative [Ricin	0.901	0.687	0.945	0.0
225432592	705	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.905	0.703	0.928	0.0
225432594	711	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.998	0.769	0.918	0.0
224102035	720	predicted protein [Populus trichocarpa]	0.998	0.759	0.918	0.0
449432712	703	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.895	0.698	0.926	0.0
356536027	707	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.890	0.690	0.907	0.0
356497472	706	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.886	0.688	0.912	0.0
356541384	708	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.875	0.677	0.914	0.0
356575815	707	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.890	0.690	0.902	0.0
357480803	702	Speckle-type POZ protein-like protein [M	0.886	0.692	0.891	0.0

>gi|255552325|ref|XP_002517207.1| protein binding protein, putative [Ricinus communis] gi|223543842|gb|EEF45370.1| protein binding protein, putative [Ricinus communis]

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/547 (94%), Positives = 533/547 (97%)

Query: 2   DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 61
           D + SRAVNSVIRRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF DTKVQRAAAGA
Sbjct: 173 DGSVSRAVNSVIRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFVDTKVQRAAAGA 232

Query: 62  LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121
           LRTLAFKNDENK QIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIKKEVLAA
Sbjct: 233 LRTLAFKNDENKKQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLAA 292

Query: 122 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 181
           GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV+PLIEMLQSPDVQLR
Sbjct: 293 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLR 352

Query: 182 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 241
           EMSAFALGRLAQD+HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV+D
Sbjct: 353 EMSAFALGRLAQDLHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSD 412

Query: 242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 301
           FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL+HLLYLMRV EK VQRRVAL
Sbjct: 413 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLHHLLYLMRVTEKAVQRRVAL 472

Query: 302 ALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAP 361
           ALAHLCSPDDQRTIFID  GLELLLGLLGST+PKQQLDGAVAL+KLANKA TLS VDAAP
Sbjct: 473 ALAHLCSPDDQRTIFIDNNGLELLLGLLGSTSPKQQLDGAVALYKLANKAATLSPVDAAP 532

Query: 362 PSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD 421
           PSPTPQVYLG+QFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD
Sbjct: 533 PSPTPQVYLGEQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD 592

Query: 422 IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 481
           IEIPNIRWEVFELMMRFIYTGSVDV+LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE
Sbjct: 593 IEIPNIRWEVFELMMRFIYTGSVDVSLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 652

Query: 482 NVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKP 541
           NV+SMYELSEAFHAISLRHTCIL+I+E FDKL+ +P HSNLIQRIIPEI NYFAKALTKP
Sbjct: 653 NVASMYELSEAFHAISLRHTCILFILEQFDKLNAKPRHSNLIQRIIPEIRNYFAKALTKP 712

Query: 542 NPHNSRL 548
           NPHNSRL
Sbjct: 713 NPHNSRL 719

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432592|ref|XP_002281388.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 1 [Vitis vinifera] gi|297737016|emb|CBI26217.3| unnamed protein product [Vitis vinifera]

 Score = 1025 bits (2650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/547 (92%), Positives = 529/547 (96%)

Query: 2   DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 61
           D + SRAVNSVIRRAADA+TNLAHENSSIKTRVRMEGGIPPLV+LLEF DTKVQRAAAGA
Sbjct: 159 DGSNSRAVNSVIRRAADAVTNLAHENSSIKTRVRMEGGIPPLVQLLEFADTKVQRAAAGA 218

Query: 62  LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121
           LRTLAFKNDENKNQIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIKKEVL A
Sbjct: 219 LRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLA 278

Query: 122 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 181
           GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI QRGAVRPLIEMLQS DVQLR
Sbjct: 279 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIAQRGAVRPLIEMLQSADVQLR 338

Query: 182 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 241
           EMSAFALGRLAQD HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV+D
Sbjct: 339 EMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSD 398

Query: 242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 301
           FI+VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV+EK VQRRVAL
Sbjct: 399 FIKVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRVAL 458

Query: 302 ALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAP 361
           ALAHLCS DDQRTIFID  GLELLLGLLGS++PKQQLDG+VAL+KLANKA TLS VDAAP
Sbjct: 459 ALAHLCSADDQRTIFIDNNGLELLLGLLGSSSPKQQLDGSVALYKLANKAMTLSPVDAAP 518

Query: 362 PSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD 421
           PSPTPQVYLG+Q+VN+ATLSDVTFLV G+RFYAHRICLLASSDAFRAMFDGGYREKDARD
Sbjct: 519 PSPTPQVYLGEQYVNSATLSDVTFLVGGKRFYAHRICLLASSDAFRAMFDGGYREKDARD 578

Query: 422 IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 481
           IEIPNIRWEVFELMMRFIYTGSV++TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE
Sbjct: 579 IEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 638

Query: 482 NVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKP 541
           NVSSMYELSEAFHAISLRHTCIL+I+E F KLS+RPGHS+LIQRIIPEI  YFAKALTKP
Sbjct: 639 NVSSMYELSEAFHAISLRHTCILFILEQFSKLSSRPGHSHLIQRIIPEIRTYFAKALTKP 698

Query: 542 NPHNSRL 548
           NPHNSRL
Sbjct: 699 NPHNSRL 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432594|ref|XP_002281401.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 2 [Vitis vinifera]

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/553 (91%), Positives = 529/553 (95%), Gaps = 6/553 (1%)

Query: 2   DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 61
           D + SRAVNSVIRRAADA+TNLAHENSSIKTRVRMEGGIPPLV+LLEF DTKVQRAAAGA
Sbjct: 159 DGSNSRAVNSVIRRAADAVTNLAHENSSIKTRVRMEGGIPPLVQLLEFADTKVQRAAAGA 218

Query: 62  LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121
           LRTLAFKNDENKNQIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIKKEVL A
Sbjct: 219 LRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLA 278

Query: 122 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 181
           GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI QRGAVRPLIEMLQS DVQLR
Sbjct: 279 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIAQRGAVRPLIEMLQSADVQLR 338

Query: 182 EMSAFALGRLAQ------DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 235
           EMSAFALGRLAQ      D HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN
Sbjct: 339 EMSAFALGRLAQKFLFCQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 398

Query: 236 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGV 295
           EDNV+DFI+VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV+EK V
Sbjct: 399 EDNVSDFIKVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAV 458

Query: 296 QRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLS 355
           QRRVALALAHLCS DDQRTIFID  GLELLLGLLGS++PKQQLDG+VAL+KLANKA TLS
Sbjct: 459 QRRVALALAHLCSADDQRTIFIDNNGLELLLGLLGSSSPKQQLDGSVALYKLANKAMTLS 518

Query: 356 SVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR 415
            VDAAPPSPTPQVYLG+Q+VN+ATLSDVTFLV G+RFYAHRICLLASSDAFRAMFDGGYR
Sbjct: 519 PVDAAPPSPTPQVYLGEQYVNSATLSDVTFLVGGKRFYAHRICLLASSDAFRAMFDGGYR 578

Query: 416 EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIA 475
           EKDARDIEIPNIRWEVFELMMRFIYTGSV++TLDIAQDLLRAADQYLLEGLKRLCEYTIA
Sbjct: 579 EKDARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIA 638

Query: 476 QDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFA 535
           QDISLENVSSMYELSEAFHAISLRHTCIL+I+E F KLS+RPGHS+LIQRIIPEI  YFA
Sbjct: 639 QDISLENVSSMYELSEAFHAISLRHTCILFILEQFSKLSSRPGHSHLIQRIIPEIRTYFA 698

Query: 536 KALTKPNPHNSRL 548
           KALTKPNPHNSRL
Sbjct: 699 KALTKPNPHNSRL 711

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102035|ref|XP_002312519.1| predicted protein [Populus trichocarpa] gi|222852339|gb|EEE89886.1| predicted protein [Populus trichocarpa]

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/550 (91%), Positives = 524/550 (95%), Gaps = 3/550 (0%)

Query: 2   DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 61
           D + SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA
Sbjct: 171 DGSNSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 230

Query: 62  LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121
           LRTLAFKNDENKNQIVEC ALPTLILMLRS+D+AIHYEAVGVIGNLVHSSPNIK+EVLAA
Sbjct: 231 LRTLAFKNDENKNQIVECYALPTLILMLRSDDAAIHYEAVGVIGNLVHSSPNIKREVLAA 290

Query: 122 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 181
           GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR
Sbjct: 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 350

Query: 182 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 241
           EMSAFALGRLAQD HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV+D
Sbjct: 351 EMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSD 410

Query: 242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 301
           FI VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEK VQRRVAL
Sbjct: 411 FISVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKAVQRRVAL 470

Query: 302 ALAHLCSPDDQRTIFIDGGG---LELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVD 358
           ALAHLCSPDDQR IFID  G   L+LLLGLLGS++ KQQLDGA+AL++LANKATTLS VD
Sbjct: 471 ALAHLCSPDDQRAIFIDNCGTAGLDLLLGLLGSSSLKQQLDGAIALYRLANKATTLSPVD 530

Query: 359 AAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD 418
           AAPPSPTPQVYLG+Q+VNN TLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD
Sbjct: 531 AAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD 590

Query: 419 ARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 478
           ARDIEIPNIRWEVFELMMRFIYTGSVDVTL IAQDLLRAADQYLLEGLKRLCEYTIAQDI
Sbjct: 591 ARDIEIPNIRWEVFELMMRFIYTGSVDVTLIIAQDLLRAADQYLLEGLKRLCEYTIAQDI 650

Query: 479 SLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKAL 538
           +LEN+ SMYELSEAFHAISLRH CIL+I+E FDKLS +P HS LIQRIIPEI NYF KAL
Sbjct: 651 TLENIGSMYELSEAFHAISLRHRCILFILEQFDKLSDKPRHSQLIQRIIPEIRNYFEKAL 710

Query: 539 TKPNPHNSRL 548
           T P+ HNSRL
Sbjct: 711 TNPHQHNSRL 720

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432712|ref|XP_004134143.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cucumis sativus]

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/543 (92%), Positives = 526/543 (96%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
           SRAVNSVIRRAADAITNLAHENS IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL
Sbjct: 161 SRAVNSVIRRAADAITNLAHENSFIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 220

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
           AFKNDENKNQIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIK+EVL AGALQ
Sbjct: 221 AFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKREVLLAGALQ 280

Query: 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 185
           PVIGLLSSCCSESQREAALLLGQFAATDSDCK+HIVQRGAVRPLIEMLQSPDVQLREMSA
Sbjct: 281 PVIGLLSSCCSESQREAALLLGQFAATDSDCKIHIVQRGAVRPLIEMLQSPDVQLREMSA 340

Query: 186 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 245
           FALGRLAQ+ HNQAGIAHNGGL+PLLKLLDSKNGSLQHNAAFALYGLADNEDNV+DFIRV
Sbjct: 341 FALGRLAQETHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRV 400

Query: 246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 305
           GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLL+LMRVAEK VQRRV+LALAH
Sbjct: 401 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLHLMRVAEKAVQRRVSLALAH 460

Query: 306 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPT 365
           LCSPDDQRTIFID  GLELLLGLLGS++ KQQLDGAVAL+KLANKATTLSSVDAAPPSPT
Sbjct: 461 LCSPDDQRTIFIDNNGLELLLGLLGSSSLKQQLDGAVALYKLANKATTLSSVDAAPPSPT 520

Query: 366 PQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP 425
           PQVYLG+Q+VNN TLSDVTFLVEGRRF+AHRICLLASSDAFRAMFDGGYREKDA+DIEIP
Sbjct: 521 PQVYLGEQYVNNPTLSDVTFLVEGRRFHAHRICLLASSDAFRAMFDGGYREKDAKDIEIP 580

Query: 426 NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 485
           NIRWEVFELMMRF+YTGSVDV+LDIAQDLLRAADQYLLEGLKRL EYTIAQDISLENVSS
Sbjct: 581 NIRWEVFELMMRFVYTGSVDVSLDIAQDLLRAADQYLLEGLKRLSEYTIAQDISLENVSS 640

Query: 486 MYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHN 545
           MYELSEAF+AISLRHTCIL+I+E F+KLS  PGHS LIQRI+PEI NYFAKALTK N  +
Sbjct: 641 MYELSEAFNAISLRHTCILFILEQFEKLSLMPGHSLLIQRILPEIRNYFAKALTKVNLQS 700

Query: 546 SRL 548
           SRL
Sbjct: 701 SRL 703

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536027|ref|XP_003536542.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score =  995 bits (2572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/543 (90%), Positives = 517/543 (95%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
           SRA+NS+IRRAADAITNLAHENSSIKTRVRMEGGIPPLV LL+F D KVQRAAAGALRTL
Sbjct: 165 SRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTL 224

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
           AFKNDENKNQIVECNALPTLILMLRSED+ +HYEAVGVIGNLVHSSPNIKKEVL AGALQ
Sbjct: 225 AFKNDENKNQIVECNALPTLILMLRSEDAGVHYEAVGVIGNLVHSSPNIKKEVLLAGALQ 284

Query: 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 185
           PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV+PLIEMLQSPDVQLREMSA
Sbjct: 285 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLREMSA 344

Query: 186 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 245
           FALGRLAQD HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN +DFIRV
Sbjct: 345 FALGRLAQDPHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNASDFIRV 404

Query: 246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 305
           GGVQ+LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV+EKG QRRVALALAH
Sbjct: 405 GGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGCQRRVALALAH 464

Query: 306 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPT 365
           LCS DDQR IFID  GLELL+GLLGS++ KQQLDGAVAL KLA+KA+TLS VDAAPPSPT
Sbjct: 465 LCSSDDQRIIFIDHYGLELLIGLLGSSSSKQQLDGAVALCKLADKASTLSPVDAAPPSPT 524

Query: 366 PQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP 425
           PQVYLG+Q+VNNATLSDVTFLVEG+RFYAHRICLLASSDAFRAMFDGGYREK+ARDIEIP
Sbjct: 525 PQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIP 584

Query: 426 NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 485
           NIRWEVFELMMRF+Y GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS
Sbjct: 585 NIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 644

Query: 486 MYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHN 545
           MYEL+EAF+AISLRH CIL+I+E FDKLS+RPGHS LIQRI PEI NYF KALTK N  N
Sbjct: 645 MYELTEAFNAISLRHACILFILEQFDKLSSRPGHSLLIQRITPEIRNYFVKALTKANSQN 704

Query: 546 SRL 548
            RL
Sbjct: 705 DRL 707

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497472|ref|XP_003517584.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/537 (91%), Positives = 512/537 (95%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
           SRA+NS+IRRAADAITNLAHENSSIKTRVR EGGIPPLV LLEF DTKVQRAAAGALRTL
Sbjct: 165 SRAINSLIRRAADAITNLAHENSSIKTRVRFEGGIPPLVHLLEFADTKVQRAAAGALRTL 224

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
           AFKNDENKNQIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSP+IKKEVL AGALQ
Sbjct: 225 AFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPDIKKEVLLAGALQ 284

Query: 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 185
           PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS DVQL+EMSA
Sbjct: 285 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSA 344

Query: 186 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 245
           FALGRLAQD HNQAGI HNGGL+PLLKLLDSKNGSLQHNAAFALYGLADNEDNV+DFIRV
Sbjct: 345 FALGRLAQDTHNQAGIVHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRV 404

Query: 246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 305
           GG+Q+LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV+EK  QRRVAL LAH
Sbjct: 405 GGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALTLAH 464

Query: 306 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPT 365
           LCS DDQR IFID  GLELL+GLLGS NPKQQLDGAVAL KLANKA TLS VDAAPPSPT
Sbjct: 465 LCSADDQRKIFIDYNGLELLMGLLGSYNPKQQLDGAVALCKLANKAMTLSPVDAAPPSPT 524

Query: 366 PQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP 425
           PQVYLG+Q+VNNATLSDVTFLVEG+RFYAHRICLLASSDAFRAMFDGGYREK+ARDIEIP
Sbjct: 525 PQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIP 584

Query: 426 NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 485
           NIRWEVFELMMRFIYTGSVD+TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS
Sbjct: 585 NIRWEVFELMMRFIYTGSVDITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 644

Query: 486 MYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPN 542
           MYELSEAF+AISLRHTCIL+I+EH+DKL  +PGHS LIQ IIPEI NYF KA+TK N
Sbjct: 645 MYELSEAFNAISLRHTCILFILEHYDKLGGKPGHSQLIQHIIPEIQNYFVKAITKAN 701

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541384|ref|XP_003539157.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/537 (91%), Positives = 513/537 (95%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
           SRA+NS+IRRAADAITNLAHENSSIKTRVR EGGIPPLV LLEF DTKVQRAAAGALRTL
Sbjct: 167 SRAINSLIRRAADAITNLAHENSSIKTRVRKEGGIPPLVHLLEFADTKVQRAAAGALRTL 226

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
           AFKNDENKNQIVECNALPTLILML SED+AIHYEAVGVIGNLVHSSP+IKKEVL AGALQ
Sbjct: 227 AFKNDENKNQIVECNALPTLILMLCSEDAAIHYEAVGVIGNLVHSSPDIKKEVLLAGALQ 286

Query: 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 185
           PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS DVQL+EMSA
Sbjct: 287 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSA 346

Query: 186 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 245
           FALGRLAQD HNQAGIAHNGGL+PLLKLLDSKNGSLQHNAAFALYGLADNEDNV+DFIRV
Sbjct: 347 FALGRLAQDTHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRV 406

Query: 246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 305
           GG+Q+LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV+EK  QRRVAL LAH
Sbjct: 407 GGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALTLAH 466

Query: 306 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPT 365
           LCS DDQR IFID  GLELL+GLLGS NPKQQLDGAVAL KLANKA TLS VDAAPPSPT
Sbjct: 467 LCSADDQRKIFIDYNGLELLMGLLGSYNPKQQLDGAVALCKLANKAMTLSPVDAAPPSPT 526

Query: 366 PQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP 425
           PQVYLG+Q+VNN TLSDVTFLVEG+RFYAHRICLLASSDAFRAMFDGGYREK+ARDIEIP
Sbjct: 527 PQVYLGEQYVNNVTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIP 586

Query: 426 NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 485
           NIRWEVFE MMRFIYTGSVD+TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS
Sbjct: 587 NIRWEVFEPMMRFIYTGSVDITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 646

Query: 486 MYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPN 542
           MYELSEAF+AISLRHTCIL+I+EH+DKLS +PGHS+LIQRIIPEI NYF KALTK N
Sbjct: 647 MYELSEAFNAISLRHTCILFILEHYDKLSGKPGHSHLIQRIIPEIQNYFVKALTKAN 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575815|ref|XP_003556032.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score =  986 bits (2550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/543 (90%), Positives = 516/543 (95%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
           SRA+NS+IRRAADAITNLAHENS+IKTRVRMEGGIPPL  LL+F D KVQRAAAGALRTL
Sbjct: 165 SRAINSLIRRAADAITNLAHENSNIKTRVRMEGGIPPLAHLLDFADAKVQRAAAGALRTL 224

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
           AFKNDENKNQIVECNALPTLILMLRSED+A+HYEAVGVIGNLVHSSPNIKKEVL AGALQ
Sbjct: 225 AFKNDENKNQIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQ 284

Query: 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 185
           PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA
Sbjct: 285 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 344

Query: 186 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 245
           FALGRLAQD HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV+DFIRV
Sbjct: 345 FALGRLAQDPHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRV 404

Query: 246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 305
           GGVQ+LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR +EKG QR+VALALAH
Sbjct: 405 GGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRASEKGCQRQVALALAH 464

Query: 306 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPT 365
           LCS DDQR IFID  GLELL+GLLGS++ KQQLDGAVAL KLANKA TLS VDAAPPSPT
Sbjct: 465 LCSSDDQRIIFIDHYGLELLIGLLGSSSSKQQLDGAVALSKLANKALTLSPVDAAPPSPT 524

Query: 366 PQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP 425
           PQVYLG+Q+VNNATLSDVTFLVEG+RFYAHRICLLASSDAFRAMFDGGY EK+ARDIEIP
Sbjct: 525 PQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYTEKEARDIEIP 584

Query: 426 NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 485
           NIRWEVFELMMRF+Y GSVDVTLDIA DLLRAA+QYLLEGLKRLCEYTIAQDIS ENVSS
Sbjct: 585 NIRWEVFELMMRFVYCGSVDVTLDIALDLLRAANQYLLEGLKRLCEYTIAQDISPENVSS 644

Query: 486 MYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPNPHN 545
           MYELSEAF+AISLRH CIL+I+E FDKLS+RPGHS LIQRIIPEI NYF KALTK N H+
Sbjct: 645 MYELSEAFNAISLRHACILFILEQFDKLSSRPGHSLLIQRIIPEIRNYFVKALTKANSHD 704

Query: 546 SRL 548
           ++L
Sbjct: 705 NQL 707

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480803|ref|XP_003610687.1| Speckle-type POZ protein-like protein [Medicago truncatula] gi|355512022|gb|AES93645.1| Speckle-type POZ protein-like protein [Medicago truncatula]

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/537 (89%), Positives = 510/537 (94%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
           SRA+NS+IRRAADAITNLAHENSSIKTRVR EGGIPPLV LLEF DTKVQRAAAGALRTL
Sbjct: 161 SRAINSLIRRAADAITNLAHENSSIKTRVRTEGGIPPLVHLLEFADTKVQRAAAGALRTL 220

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
           AFKNDENKNQIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIKK+V+ AGALQ
Sbjct: 221 AFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKDVILAGALQ 280

Query: 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 185
           PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS DVQL+EMSA
Sbjct: 281 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSA 340

Query: 186 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV 245
           FALGRLAQD HNQAGIAH+GGLVPLLKLLDSKNGSLQHNAAFALYGLA+NEDNV DFIR+
Sbjct: 341 FALGRLAQDTHNQAGIAHSGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVPDFIRI 400

Query: 246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 305
           GG+++ QDGEFI+QATKDCVAKTLKRLEEKI+GRVLNHLLYLMRV+EK  QRRVALALAH
Sbjct: 401 GGIKRFQDGEFIIQATKDCVAKTLKRLEEKINGRVLNHLLYLMRVSEKAFQRRVALALAH 460

Query: 306 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPT 365
           LCS DDQ+ IFID  GLELL+GLLGS+ PKQQLDGAVALFKLANKA TLS VDAAPPSPT
Sbjct: 461 LCSADDQKKIFIDHNGLELLIGLLGSSCPKQQLDGAVALFKLANKAMTLSPVDAAPPSPT 520

Query: 366 PQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP 425
           PQVYLG+Q+VNNATLSDVTFLVEG+RF+AHRICLLASSDAFRAMFDGGYREKDARDIEIP
Sbjct: 521 PQVYLGEQYVNNATLSDVTFLVEGKRFHAHRICLLASSDAFRAMFDGGYREKDARDIEIP 580

Query: 426 NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSS 485
           NIRW+VFELMMRFIYTGSVDVTL+IAQDLLRAADQYLLEGLKRLCEYTIAQ +SLENVSS
Sbjct: 581 NIRWQVFELMMRFIYTGSVDVTLEIAQDLLRAADQYLLEGLKRLCEYTIAQHVSLENVSS 640

Query: 486 MYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKPN 542
           MYELSEAF+A SLRHTCIL+I+ HFDKLS  PG+S+LIQR IP+I NYF  ALTK N
Sbjct: 641 MYELSEAFNATSLRHTCILFILGHFDKLSETPGNSDLIQRTIPDIRNYFVNALTKGN 697

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	548
TAIR|locus:2150295	710	ARIA "ARM repeat protein inter	0.983	0.759	0.849	5.5e-244
TAIR|locus:2179842	737	ABAP1 "ARMADILLO BTB protein 1	0.970	0.721	0.665	2.3e-190
ASPGD|ASPL0000008980	579	AN12408 [Emericella nidulans (	0.543	0.514	0.289	3.3e-20
SGD|S000000739	578	VAC8 "Phosphorylated and palmi	0.545	0.517	0.279	9.2e-20
UNIPROTKB|E1BWB8	1025	E1BWB8 "Uncharacterized protei	0.277	0.148	0.354	5.8e-18
POMBASE|SPBC354.14c	550	vac8 "vacuolar protein Vac8 (p	0.547	0.545	0.289	3e-17
UNIPROTKB|F1SGS8	1025	ABTB2 "Uncharacterized protein	0.279	0.149	0.356	3.4e-17
CGD|CAL0001835	585	VAC8 [Candida albicans (taxid:	0.529	0.495	0.286	3.5e-17
UNIPROTKB|Q59MN0	585	VAC8 "Vacuolar protein 8" [Can	0.529	0.495	0.286	3.5e-17
FB|FBgn0264493	829	rdx "roadkill" [Drosophila mel	0.279	0.184	0.376	8.6e-17

TAIR|locus:2150295 ARIA "ARM repeat protein interacting with ABF2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2351 (832.7 bits), Expect = 5.5e-244, P = 5.5e-244
 Identities = 458/539 (84%), Positives = 497/539 (92%)

Query:     2 DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 61
             D + SRAVNSVIRRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF+D+KVQRAAAGA
Sbjct:   162 DGSSSRAVNSVIRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGA 221

Query:    62 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121
             LRTLAFKND+NKNQIVECNALPTLILML SED+AIHYEAVGVIGNLVHSSP+IKKEVL A
Sbjct:   222 LRTLAFKNDDNKNQIVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTA 281

Query:   122 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 181
             GALQPVIGLLSSCC ESQREAALLLGQFA+TDSDCKVHIVQRGAVRPLIEMLQSPDVQL+
Sbjct:   282 GALQPVIGLLSSCCPESQREAALLLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLK 341

Query:   182 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 241
             EMSAFALGRLAQD HNQAGIAH+GGL PLLKLLDS+NGSLQHNAAFALYGLADNEDNV+D
Sbjct:   342 EMSAFALGRLAQDAHNQAGIAHSGGLGPLLKLLDSRNGSLQHNAAFALYGLADNEDNVSD 401

Query:   242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL 301
             FIRVGG+QKLQDGEFIVQATKDCV+KTLKRLEEKIHGRVL HLLYLMR++EK +QRRVAL
Sbjct:   402 FIRVGGIQKLQDGEFIVQATKDCVSKTLKRLEEKIHGRVLRHLLYLMRISEKSIQRRVAL 461

Query:   302 ALAHLCSPDDQRTIFIDXXXXXXXXXXXXSTNPKQQLDGAVALFKLANKATTLSSVDAAP 361
             ALAHLCSP+DQRTIFID            S N KQQLDGA AL+KLANK+  LS VDAAP
Sbjct:   462 ALAHLCSPEDQRTIFIDDNGLELLLGLLGSLNTKQQLDGAAALYKLANKSMALSPVDAAP 521

Query:   362 PSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD 421
             PSPT +VYLG+Q+VNNATLSDVTFLVEGR FYAHRICLLASSDAFRAMFDGGYREKDARD
Sbjct:   522 PSPTQRVYLGEQYVNNATLSDVTFLVEGRTFYAHRICLLASSDAFRAMFDGGYREKDARD 581

Query:   422 IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 481
             IEIPNI+WEVFELMMRFIYTGSVD+T +I++DLLRAADQYLLEGLKRLCEYTIAQDI+LE
Sbjct:   582 IEIPNIKWEVFELMMRFIYTGSVDITNEISKDLLRAADQYLLEGLKRLCEYTIAQDITLE 641

Query:   482 NVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTK 540
             ++  MYELSEAFHA+SLR  CI++I+EHFDKLS+ P  + L+QR IPEI  YF +ALTK
Sbjct:   642 SIGDMYELSEAFHAMSLRQACIMFILEHFDKLSSMPWQNELVQRTIPEIREYFCRALTK 700

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2179842 ABAP1 "ARMADILLO BTB protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1845 (654.5 bits), Expect = 2.3e-190, P = 2.3e-190
 Identities = 354/532 (66%), Positives = 436/532 (81%)

Query:    10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 69
             N+VIRRAAD ITN+AH+N  IKT +R+EGGI PLVELL F D KVQRAAAGALRT++F+N
Sbjct:   197 NAVIRRAADIITNIAHDNPRIKTNIRVEGGIAPLVELLNFPDVKVQRAAAGALRTVSFRN 256

Query:    70 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 129
             DENK+QIVE NALPTL+LML+S+DS +H EA+G IGNLVHSSP+IKKEV+ AGALQPVIG
Sbjct:   257 DENKSQIVELNALPTLVLMLQSQDSTVHGEAIGAIGNLVHSSPDIKKEVIRAGALQPVIG 316

Query:   130 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 189
             LLSS C E+QREAALL+GQFAA DSDCKVHI QRGA+ PLI+ML+S D Q+ EMSAFALG
Sbjct:   317 LLSSTCLETQREAALLIGQFAAPDSDCKVHIAQRGAITPLIKMLESSDEQVVEMSAFALG 376

Query:   190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 249
             RLAQD HNQAGIAH GG++ LL LLD K GS+QHNAAFALYGLADNE+NVADFI+ GG+Q
Sbjct:   377 RLAQDAHNQAGIAHRGGIISLLNLLDVKTGSVQHNAAFALYGLADNEENVADFIKAGGIQ 436

Query:   250 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 309
             KLQD  F VQ T+DCV +TLKRL+ KIHG VLN LLYLMR AEK VQ R+ALALAHLC P
Sbjct:   437 KLQDDNFTVQPTRDCVVRTLKRLQNKIHGPVLNQLLYLMRTAEKTVQIRIALALAHLCDP 496

Query:   310 DDQRTIFIDXXXXXXXXXXXXSTNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQVY 369
              D + IFID             ++ KQQ   + AL++LA KAT+ +  D+AP SPT QV+
Sbjct:   497 KDGKLIFIDNNGVEFLLELLYFSSNKQQRYSSSALYELAKKATSFAPEDSAPCSPTQQVF 556

Query:   370 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRW 429
             LG++FVNN T+SDVTFL++G++FYAH+I L+ASSD FRAMFDG Y+E++A+++EIPNIRW
Sbjct:   557 LGEKFVNNPTMSDVTFLIDGKQFYAHKIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRW 616

Query:   430 EVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL 489
             EVFELMM+FIY+G +++   +A+DLL AADQYLLEGLKR CEYTIAQ+I L+N+  MYEL
Sbjct:   617 EVFELMMKFIYSGRINIAKHLAKDLLVAADQYLLEGLKRQCEYTIAQEICLDNIPEMYEL 676

Query:   490 SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHNYFAKALTKP 541
             ++ F+A +LR  C L+++EHF KLS++   +  +++IIPEI +Y    LT+P
Sbjct:   677 ADTFNASALRRACTLFVLEHFTKLSSQLWFAKFVKQIIPEIRSYMTDILTRP 728

GO:0009507 "chloroplast" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006261 "DNA-dependent DNA replication" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0031261 "DNA replication preinitiation complex" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:2000104 "negative regulation of DNA-dependent DNA replication" evidence=IMP

ASPGD|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)]

 Score = 268 (99.4 bits), Expect = 3.3e-20, P = 3.3e-20
 Identities = 91/314 (28%), Positives = 152/314 (48%)

Query:    16 AADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 74
             A   ITNLA HE++  K ++   G + PL+ L +  D +VQR A GAL  +   +D+N+ 
Sbjct:   167 AVGCITNLATHEDN--KAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMTH-SDDNRQ 223

Query:    75 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSS 133
             Q+V   A+P L+ +L S D  + Y     + N+   + N K+       L Q ++ L+ S
Sbjct:   224 QLVNAGAIPVLVQLLSSSDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQSLVHLMDS 283

Query:   134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193
                + Q +AAL L   A+ D   ++ IV+   + PL+ +LQS  + L   +   +  ++ 
Sbjct:   284 STPKVQCQAALALRNLAS-DEKYQLEIVRAKGLPPLLRLLQSSYLPLILSAVACIRNISI 342

Query:   194 DMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADFI-RVGGVQKL 251
                N++ I   G L PL+ LL S  N  +Q +A   L  LA + D   + + + G VQK 
Sbjct:   343 HPLNESPIIDAGFLKPLVDLLGSTDNEEIQCHAISTLRNLAASSDRNKELVLQAGAVQKC 402

Query:   252 QDGEFIVQATKDC---VAKTLKRLEEKIHGRVLNHLLY--LMRVAEKG---VQRRVALAL 303
             +D    V  T       A  +  L +++   +L+  ++  L+ + E     VQ   A AL
Sbjct:   403 KDLVLRVPVTVQSEMTAAIAVLALSDELKPHLLSLGVFDVLIPLTESDSIEVQGNSAAAL 462

Query:   304 AHLCSPDDQRTIFI 317
              +L S     +IF+
Sbjct:   463 GNLSSKVGDYSIFV 476

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000011 "vacuole inheritance" evidence=IEA

SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 264 (98.0 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 88/315 (27%), Positives = 150/315 (47%)

Query:    16 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 75
             A   ITNLA  + + K ++   G + PL +L +    +VQR A GAL  +   ++EN+ +
Sbjct:   146 AVGCITNLATRDDN-KHKIATSGALIPLTKLAKSKHIRVQRNATGALLNMTH-SEENRKE 203

Query:    76 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSSC 134
             +V   A+P L+ +L S D  + Y     + N+     N KK       L   ++ L+ S 
Sbjct:   204 LVNAGAVPVLVSLLSSTDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSP 263

Query:   135 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194
              S  + +A L L   A+ D+  ++ IV+ G +  L++++QS  + L   S   +  ++  
Sbjct:   264 SSRVKCQATLALRNLAS-DTSYQLEIVRAGGLPHLVKLIQSDSIPLVLASVACIRNISIH 322

Query:   195 MHNQAGIAHNGGLVPLLKLLDSKNGS-LQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQ 252
               N+  I   G L PL++LLD K+   +Q +A   L  LA  +E N  +F   G V+K +
Sbjct:   323 PLNEGLIVDAGFLKPLVRLLDYKDSEEIQCHAVSTLRNLAASSEKNRKEFFESGAVEKCK 382

Query:   253 ----DGEFIVQAT-KDCVA----KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 303
                 D    VQ+    C A      + +L+  +   +L+ L+ +     + V    A AL
Sbjct:   383 ELALDSPVSVQSEISACFAILALADVSKLD-LLEANILDALIPMTFSQNQEVSGNAAAAL 441

Query:   304 AHLCSPDDQRTIFID 318
             A+LCS  +  T  I+
Sbjct:   442 ANLCSRVNNYTKIIE 456

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0043495 "protein anchor" evidence=IMP;IPI

GO:0071562 "nucleus-vacuole junction assembly" evidence=IMP

GO:0071561 "nucleus-vacuole junction" evidence=IDA;IPI

GO:0000011 "vacuole inheritance" evidence=IEA;IMP

GO:0071255 "CVT vesicle assembly" evidence=IMP

GO:0016236 "macroautophagy" evidence=IMP

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IDA;IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BWB8 E1BWB8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 57/161 (35%), Positives = 98/161 (60%)

Query:   370 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDA---RDIEIPN 426
             L   F+NN  +SDVTFLVEG+ FYAH++ L+ +S+ F+ +      E D+   + +EI +
Sbjct:   834 LDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNK-TEHDSHGSKTVEISD 892

Query:   427 IRWEVFELMMRFIYTG---SVDV-TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 482
             +++ +F+++M+++Y G   S+++ T DI + LL AA  + L+GL+R CE   AQ IS+EN
Sbjct:   893 MKYNIFKMLMQYLYYGGTESMEIPTTDILE-LLSAASLFQLDGLQRHCEILCAQTISMEN 951

Query:   483 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 523
               S+Y+ ++  +A  L   C  + ++H   L  +     LI
Sbjct:   952 SVSIYKYAKIHNAPELAAFCEGFFLKHMSSLLEQDSFRQLI 992

GO:0046982 "protein heterodimerization activity" evidence=IEA

POMBASE|SPBC354.14c vac8 "vacuolar protein Vac8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 241 (89.9 bits), Expect = 3.0e-17, P = 3.0e-17
 Identities = 91/314 (28%), Positives = 148/314 (47%)

Query:    16 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 75
             A   ITNLA  + + K+++   G + PL  L +  D +VQR A GAL  +     EN+ Q
Sbjct:   146 AVGCITNLATLDEN-KSKIAHSGALGPLTRLAKSKDIRVQRNATGALLNMTHSY-ENRQQ 203

Query:    76 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSSC 134
             +V    +P L+ +L S D+ + Y     I N+   + + K+   +   L + +I L+ + 
Sbjct:   204 LVSAGTIPVLVSLLPSSDTDVQYYCTTSISNIAVDAVHRKRLAQSEPKLVRSLIQLMDTS 263

Query:   135 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194
               + Q +AAL L   A+ D   ++ IVQ  A+  L+ +L+S  + L   S   +  ++  
Sbjct:   264 SPKVQCQAALALRNLAS-DERYQIEIVQSNALPSLLRLLRSSYLPLILASVACIRNISIH 322

Query:   195 MHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQ 252
               N++ I   G L PL+ LL  ++N  +Q +A   L  LA  +E N    I    +QKL+
Sbjct:   323 PLNESPIIDAGFLRPLVDLLSCTENEEIQCHAVSTLRNLAASSERNKRAIIEANAIQKLR 382

Query:   253 ----DGEFIVQATKD-CVAKTLKRLEEK---IHGRVLNHLLYLMRVAEKGVQRRVALALA 304
                 D    VQ+    C+A      E K   ++  + N L+ L       VQ   A AL 
Sbjct:   383 CLILDAPVSVQSEMTACLAVLALSDEFKSYLLNFGICNVLIPLTDSMSIEVQGNSAAALG 442

Query:   305 HLCSPDDQRTIFID 318
             +L S  D  + FI+
Sbjct:   443 NLSSNVDDYSRFIE 456

GO:0000011 "vacuole inheritance" evidence=ISO

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=ISO

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016236 "macroautophagy" evidence=ISO

GO:0042144 "vacuole fusion, non-autophagic" evidence=ISO

GO:0043234 "protein complex" evidence=NAS

GO:0043495 "protein anchor" evidence=ISO

GO:0071255 "CVT vesicle assembly" evidence=ISO

UNIPROTKB|F1SGS8 ABTB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 3.4e-17, P = 3.4e-17
 Identities = 57/160 (35%), Positives = 98/160 (61%)

Query:   370 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRA-MFDGGYREKDA-RDIEIPNI 427
             L   F+NN  +SDVTFLVEG+ FYAH++ L+ +S+ F+  M +   ++ D+ + IEI ++
Sbjct:   834 LDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDM 893

Query:   428 RWEVFELMMRFIYTG---SVDV-TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENV 483
             ++ +F++MMR++Y G   S+D+ T DI + LL AA  + L+ L+R CE   +Q +S+E+ 
Sbjct:   894 KYHIFQMMMRYLYYGGTESMDIPTGDILE-LLSAASLFQLDALQRHCEILCSQTLSVESA 952

Query:   484 SSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 523
              S Y+ ++  +A  L   C  + ++H   L  +     LI
Sbjct:   953 VSTYKYAKIHNAPELALFCEGFFLKHMKALLEQDSFRQLI 992

GO:0046982 "protein heterodimerization activity" evidence=IEA

CGD|CAL0001835 VAC8 [Candida albicans (taxid:5476)]

 Score = 241 (89.9 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 87/304 (28%), Positives = 142/304 (46%)

Query:    16 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 75
             A   ITNLA ++ + K+++   G + PL +L +  D +VQR A GAL  +     EN+ +
Sbjct:   148 AVGCITNLATQDDN-KSKIAKSGALIPLTKLAKSKDIRVQRNATGALLNMTHSG-ENRQE 205

Query:    76 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ-PVIGLLSSC 134
             +V   A+P L+ +L +ED+ + Y     + N+     N KK       L   ++ L+ S 
Sbjct:   206 LVNAGAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQLVHLMDSP 265

Query:   135 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194
                 Q +A L L   A+ DS  +V IV+ G +  L+++L      L   +   +  ++  
Sbjct:   266 SPRVQCQATLALRNLAS-DSGYQVEIVRAGGLPHLVQLLTCNHQPLVLAAVACIRNISIH 324

Query:   195 MHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQ 252
               N+A I   G L PL+ LLD + +  +Q +A   L  LA  +E N    +  G V K +
Sbjct:   325 PLNEALIIEAGFLKPLVGLLDYTDSEEIQCHAVSTLRNLAASSEKNRTALLAAGAVDKCK 384

Query:   253 DGEFIVQATKD-----CVA--KTLKRLEEKIHGRVLNHLLYLMRVAEKG-VQRRVALALA 304
             +    V  T       C A       L+ K++   +  +L  +  +E G V    A ALA
Sbjct:   385 ELVLKVPLTVQSEISACFAILALADDLKPKLYESHIIDVLIPLTFSENGEVCGNSAAALA 444

Query:   305 HLCS 308
             +LCS
Sbjct:   445 NLCS 448

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IEA

GO:0071561 "nucleus-vacuole junction" evidence=IEA

GO:0043495 "protein anchor" evidence=IEA

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071562 "nucleus-vacuole junction assembly" evidence=IEA

GO:0071255 "CVT vesicle assembly" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

UNIPROTKB|Q59MN0 VAC8 "Vacuolar protein 8" [Candida albicans SC5314 (taxid:237561)]

 Score = 241 (89.9 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 87/304 (28%), Positives = 142/304 (46%)

Query:    16 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 75
             A   ITNLA ++ + K+++   G + PL +L +  D +VQR A GAL  +     EN+ +
Sbjct:   148 AVGCITNLATQDDN-KSKIAKSGALIPLTKLAKSKDIRVQRNATGALLNMTHSG-ENRQE 205

Query:    76 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ-PVIGLLSSC 134
             +V   A+P L+ +L +ED+ + Y     + N+     N KK       L   ++ L+ S 
Sbjct:   206 LVNAGAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQLVHLMDSP 265

Query:   135 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194
                 Q +A L L   A+ DS  +V IV+ G +  L+++L      L   +   +  ++  
Sbjct:   266 SPRVQCQATLALRNLAS-DSGYQVEIVRAGGLPHLVQLLTCNHQPLVLAAVACIRNISIH 324

Query:   195 MHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQ 252
               N+A I   G L PL+ LLD + +  +Q +A   L  LA  +E N    +  G V K +
Sbjct:   325 PLNEALIIEAGFLKPLVGLLDYTDSEEIQCHAVSTLRNLAASSEKNRTALLAAGAVDKCK 384

Query:   253 DGEFIVQATKD-----CVA--KTLKRLEEKIHGRVLNHLLYLMRVAEKG-VQRRVALALA 304
             +    V  T       C A       L+ K++   +  +L  +  +E G V    A ALA
Sbjct:   385 ELVLKVPLTVQSEISACFAILALADDLKPKLYESHIIDVLIPLTFSENGEVCGNSAAALA 444

Query:   305 HLCS 308
             +LCS
Sbjct:   445 NLCS 448

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0030447 "filamentous growth" evidence=IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

FB|FBgn0264493 rdx "roadkill" [Drosophila melanogaster (taxid:7227)]

 Score = 240 (89.5 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 58/154 (37%), Positives = 82/154 (53%)

Query:   370 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRW 429
             LG+ F +N   SDVT  V GR F AH+  L A SD F AMF+    E+    + I ++  
Sbjct:   645 LGNLF-DNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDH 703

Query:   430 EVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL 489
             EV + M+RFIYTG       +A DLL AAD+Y LE LK +CE  +  ++S+E  +    L
Sbjct:   704 EVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLIL 763

Query:   490 SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 523
             ++   A  L+   I +I  H   +    G  N+I
Sbjct:   764 ADLHSADQLKAQTIDFINTHATDVMETSGWQNMI 797

GO:0007349 "cellularization" evidence=IMP

GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP

GO:0048592 "eye morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IMP

GO:0030162 "regulation of proteolysis" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IGI

GO:0046330 "positive regulation of JNK cascade" evidence=IMP

GO:0042308 "negative regulation of protein import into nucleus" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9DHT4	ARIA_ARATH	No assigned EC number	0.8682	0.8740	0.6746	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.810.1 hypothetical protein (656 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	548
pfam00651	101	pfam00651, BTB, BTB/POZ domain	4e-25
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	9e-24
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-17
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-16
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-13
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	4e-11
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	8e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	8e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-07
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	8e-07
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	3e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	8e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-05
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	4e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	9e-05
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	3e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.001
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.002

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 99.2 bits (248), Expect = 4e-25
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 370 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRW 429
           L +    N  L DVT +V  + F+AH+  L A S  F+A+F G    +    I + ++  
Sbjct: 1   LNELR-ENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEVE----ITLEDVSP 55

Query: 430 EVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEY 472
           E FE ++ FIYTG +++T +   DLL  AD+  +  L   CE 
Sbjct: 56  EDFEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEE 98

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 95.1 bits (237), Expect = 9e-24
 Identities = 33/97 (34%), Positives = 58/97 (59%)

Query: 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 441
           DVT +V G++F+AH+  L A S  F+A+F   ++E D  +I + ++  E F  ++ F+YT
Sbjct: 1   DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYT 60

Query: 442 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 478
           G +D+  +  ++LL  AD   + GL  LCE  + + +
Sbjct: 61  GKLDLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 43/118 (36%), Positives = 62/118 (52%)

Query: 34  VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 93
           V   GG+P LV LL  +D  VQR AA AL  L+  N++N   +VE   LP L+ +L+SED
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 94  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 151
             +   A+  + NL     + K  VL AG +  ++ LL S   + Q+ A   L   A+
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 38/103 (36%), Positives = 58/103 (56%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
           S +  +V R AA A++NL+  N+     V   GG+P LV+LL+  D +V +AA  ALR L
Sbjct: 17  SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL 76

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 108
           A   ++NK  ++E   +P L+ +L S +  I   A G + NL 
Sbjct: 77  AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 176
            V+ AG L  ++ LLSS     QREAA  L   +A ++D    +V+ G +  L+++L+S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 177 DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFAL 229
           D ++ + + +AL  LA    +   I    G VP L+ LLDS N  +Q NA  AL
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 33/119 (27%), Positives = 58/119 (48%)

Query: 75  QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 134
            +++   LP L+ +L S D  +  EA   + NL   + +  + V+ AG L  ++ LL S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 135 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 193
             E  + A   L   AA   D K+ +++ G V  L+ +L S +  +++ +  AL  LA 
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 15/143 (10%)

Query: 383 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTG 442
           +  +  G     H+I L +SS+ F+ MF   ++E +   I + NI ++ F  ++++IYTG
Sbjct: 14  IIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENE---INL-NIDYDSFNEVIKYIYTG 69

Query: 443 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAIS----- 497
            +++T +  +D+L  A+  +++ L  LC   I + I   N   +Y  S  F+        
Sbjct: 70  KINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSF-FYGCKKLYSA 128

Query: 498 -----LRHTCILYIMEHFDKLST 515
                  +  ++Y    F  LS 
Sbjct: 129 AYNYIRNNIELIYNDPDFIYLSK 151

Length = 534

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 58.0 bits (140), Expect = 8e-09
 Identities = 69/328 (21%), Positives = 139/328 (42%), Gaps = 29/328 (8%)

Query: 38  GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
           G +P  VE + E     +Q  AA AL  +A    +    +V+  A+P  I +L S +  +
Sbjct: 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDV 173

Query: 97  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ--REAALLLGQFAATDS 154
             +AV  +GN+   S   +  VL  GAL+P++GLL S        R A   L       +
Sbjct: 174 REQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233

Query: 155 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKL 213
                     A+  L +++ S D ++   + +A+  L+   + +     + G+   L++L
Sbjct: 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVEL 293

Query: 214 LDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK----- 267
           L  ++  +Q  A  ++  +   ++D     I  G ++  +    ++ + K+ + K     
Sbjct: 294 LSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRS---LLSSPKENIRKEACWT 350

Query: 268 -------TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-----PDDQRTI 315
                    ++++  I   ++  L++L+  AE  +++    A+++  S     PD  R  
Sbjct: 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR-Y 409

Query: 316 FIDGGGLELLLGLL-GSTN--PKQQLDG 340
            +  G ++ L  LL    N   +  LD 
Sbjct: 410 LVSQGFIKPLCDLLDVVDNKIIEVALDA 437

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 57.8 bits (140), Expect = 1e-08
 Identities = 65/271 (23%), Positives = 107/271 (39%), Gaps = 54/271 (19%)

Query: 8   AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 67
           A   V      A+++L      +   +    G+  L+ LL  +  + Q  A   L  L  
Sbjct: 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTD 475

Query: 68  KNDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 121
           + DE+K  I     +P L+ +L +      EDSA       V+ NL   S +I+  V +A
Sbjct: 476 EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSAT------VLWNLCCHSEDIRACVESA 529

Query: 122 GALQPVIGLLSSCCSESQREAALLLGQF-----AAT-----------DSDCKVH------ 159
           GA+  ++ LL +   + Q  AA  L +      AAT             + KVH      
Sbjct: 530 GAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLG 589

Query: 160 ----------IVQRG-----AVRPLIEMLQSPDVQLREMSAFALGRL---AQDMHNQAGI 201
                     +V+ G     A+R LI++L S   + +E +A  L  +    QD+      
Sbjct: 590 HVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT 649

Query: 202 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 232
                + P +KLL +   ++   +A AL  L
Sbjct: 650 DEI--INPCIKLLTNNTEAVATQSARALAAL 678

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 16  AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR--TLAFKNDENK 73
           AA  +  L  E   ++ +V + G IPPL+ LL+    + Q+AAA A+   +    +D   
Sbjct: 78  AAAVLGVLCKEED-LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVG 136

Query: 74  NQI-VECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 129
           ++I      +P+L   L+    +D  +     G + NL  S+       L AG +  ++ 
Sbjct: 137 SKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVK 196

Query: 130 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFAL 188
           LLSS  S++Q  AA LL +           ++  GAV+ L+++L Q  +V +R  +A AL
Sbjct: 197 LLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256

Query: 189 GRL-AQDMHNQAGIAHNGGLVPLL 211
             L +Q    +  IA  GG +P L
Sbjct: 257 EALSSQSKEAKQAIADAGG-IPAL 279

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 55.1 bits (133), Expect = 8e-08
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 40   IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI--VECNALPTLILMLRSEDSAIH 97
            + PLVE+L       Q AA GAL  L+  N      I  VE NAL  L  +L S+ S   
Sbjct: 1275 VQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLEL 1334

Query: 98   YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
             E    +  ++ ++  I+    AA  ++P+I LL S  S +Q      L +    D +  
Sbjct: 1335 KEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL--LDDEQL 1392

Query: 158  VHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194
              +V   GAV PL+ ++   +  L E +  AL +L +D
Sbjct: 1393 AELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKD 1430

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 52.4 bits (126), Expect = 6e-07
 Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 9/196 (4%)

Query: 43   LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 102
            LV +L       + +AA AL+ L F  +  ++  +   A+  L+ ML   ++    E   
Sbjct: 1237 LVAVLRLGSRSARYSAARALQEL-FSAEHIRDSELARQAVQPLVEML---NTGSESEQHA 1292

Query: 103  VIGNLVH-SSPNIKKEVLAA----GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
             IG L+  SS N  K +  A     AL+ +  +LSS  S   +E A  L +   T++  +
Sbjct: 1293 AIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIR 1352

Query: 158  VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 217
                    + PLI +L S     +E    AL RL  D      +A +G +VPL+ L+   
Sbjct: 1353 STPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGT 1412

Query: 218  NGSLQHNAAFALYGLA 233
            N  L   A  AL  L 
Sbjct: 1413 NYVLHEAAISALIKLG 1428

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 52.4 bits (126), Expect = 6e-07
 Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 44/258 (17%)

Query: 16  AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND----- 70
           +A  + NL   +  I+  V   G +P L+ LL+    K Q  AA  L  L    D     
Sbjct: 508 SATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATIS 567

Query: 71  -----------ENKNQIVEC---------------------NALPTLILMLRSEDSAIHY 98
                      E+K  +++                      +AL TLI +L S       
Sbjct: 568 QLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQE 627

Query: 99  EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ-FAATDSDCK 157
           +A  V+ ++  S  ++ + +     + P I LL++       ++A  L     +   + K
Sbjct: 628 KAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRK 687

Query: 158 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV-PLLKLLDS 216
           V      A++PLI++ +S  +++ E +  AL  L  D    A  A    ++ PL ++L  
Sbjct: 688 VSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD-PEVAAEALAEDIILPLTRVL-- 744

Query: 217 KNGSLQ--HNAAFALYGL 232
           + G+L+   NAA AL  L
Sbjct: 745 REGTLEGKRNAARALAQL 762

Length = 2102

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 42/236 (17%)

Query: 119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 178
           LA  A   ++ LL       +  AA+ LG+  + +           AV  L E+L   D 
Sbjct: 40  LAPEAADELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDP 88

Query: 179 QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNED 237
           ++R+ +A ALG L               + PL++LL+  +N  ++  AA AL  L D E 
Sbjct: 89  RVRDAAADALGELGDPE----------AVPPLVELLENDENEGVRAAAARALGKLGD-ER 137

Query: 238 NVADFIRVGGVQKLQDGEFIVQATKDCVAKT------LKRLEEKIHGRVLNHLLYLMRVA 291
            +   +     + LQD +    A     A         + L E      +  L+ L+   
Sbjct: 138 ALDPLL-----EALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDE 192

Query: 292 EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 347
           +  V+R  A AL  L S + +          +LL+  L   + + +    +AL ++
Sbjct: 193 DADVRRAAASALGQLGSENVE--------AADLLVKALSDESLEVRKAALLALGEI 240

Length = 335

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 4/216 (1%)

Query: 4   NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 63
             S    S++R A   ++NL    +       +   +P L +L+   D +V   A  A+ 
Sbjct: 209 LSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268

Query: 64  TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 123
            L+   +E    +++      L+ +L  E + I   A+  +GN+V  S +  + ++  GA
Sbjct: 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGA 328

Query: 124 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 183
           L+    LLSS     ++EA   +    A +++    ++    + PLI +L S + ++++ 
Sbjct: 329 LKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388

Query: 184 SAFALGRLAQDMHNQAGI----AHNGGLVPLLKLLD 215
           + +A+        N+  I       G + PL  LLD
Sbjct: 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424

Length = 526

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 69  NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 109
           +DENK  +V+   LP L+ +L+SED  +  EA   + NL  
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 69  NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 109
           + ENK  ++E  A+P L+ +L S D  +  EA   + NL  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 27 NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 67
          +   K  V   GG+P LVELL+  D +V + AA AL  L+ 
Sbjct: 1  DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 27 NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 66
          +   K  V   G +PPLV+LL   D +VQ  AA AL  LA
Sbjct: 1  SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 273 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGS 331
           E  I    L  L+ L+  +++ VQR  A AL++L +  +D     ++ GGL  L+ LL S
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 332 TNPKQQLDGAVALFKLA 348
            + +       AL  LA
Sbjct: 61  EDEEVVKAALWALRNLA 77

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 9/220 (4%)

Query: 16  AADAITNLAHENSSIKTRVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 74
           AA A+TN+A   ++ +T+V ++ G +P  ++LL  T+  V+  A  AL  +A  ++  ++
Sbjct: 135 AAWALTNIA-SGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193

Query: 75  QIVECNALPTLILMLRSEDSAIHYE----AVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
            +++C AL  L+ +L S  SAIH      A   + NL             + AL  +  L
Sbjct: 194 YVLQCGALEPLLGLLLS--SAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKL 251

Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           + S   E   +A   +   +   ++    ++  G    L+E+L     +++  +  ++G 
Sbjct: 252 IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN 311

Query: 191 LAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFAL 229
           +     +Q  +  N G +     LL S   +++  A + +
Sbjct: 312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 12/159 (7%)

Query: 80  NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 139
            A+P L+ +LRS        A  V+G L     +++ +VL  G + P++ LL S  +E+Q
Sbjct: 58  QAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE-DLRVKVLLGGCIPPLLSLLKSGSAEAQ 116

Query: 140 REAALLLGQFAATDSDCKVHI-----VQRGAVRPLIEMLQSPDVQLREMSAF---ALGRL 191
           + AA  +  +A +      H+        G V  L + LQ  + Q + +      AL  L
Sbjct: 117 KAAAEAI--YAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174

Query: 192 AQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 229
                   +     GG+  L+KLL S N   Q NAA  L
Sbjct: 175 CGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLL 213

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 35/137 (25%)

Query: 201 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQ 259
           +   GGL  L+ LL S + ++Q  AA+AL  L+    DN+   +  GG+           
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLP---------- 52

Query: 260 ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFID 318
                                   L+ L++  ++ V +    AL +L + P+D + I ++
Sbjct: 53  -----------------------ALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLE 89

Query: 319 GGGLELLLGLLGSTNPK 335
            GG+  L+ LL S+N  
Sbjct: 90  AGGVPKLVNLLDSSNED 106

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 62/253 (24%), Positives = 97/253 (38%), Gaps = 60/253 (23%)

Query: 40   IPPLVELLEFTDTKVQRA--AAGALRTLAFKNDENKNQIVECNALPTLI--LMLRSEDSA 95
            IP LV+LL+    +      A G L  LA  +D NK  + E  AL  L   L L  +DS 
Sbjct: 1148 IPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDS- 1206

Query: 96   IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA-LLLGQFAAT-- 152
                A  ++  L  SSP +++   A GA+  ++ +L      ++  AA  L   F+A   
Sbjct: 1207 TEEAASELLRIL-FSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHI 1265

Query: 153  -DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI---------- 201
             DS+     + R AV+PL+EML +     +  +  AL +L+    ++A            
Sbjct: 1266 RDSE-----LARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALE 1320

Query: 202  -----------------------------------AHNGGLVPLLKLLDSKNGSLQHNAA 226
                                               A    + PL+ LL S++ + Q    
Sbjct: 1321 NLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGV 1380

Query: 227  FALYGLADNEDNV 239
             AL  L D+E   
Sbjct: 1381 CALDRLLDDEQLA 1393

Length = 2102

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 28/182 (15%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----TDTKVQRAAAGALRTLA 66
           S+  RA D +  L  E S++K  V+         ELL++     D + +     A+  LA
Sbjct: 317 SIRLRALDLLYKLVDE-SNVKEIVK---------ELLKYVSEIADPEFKIKLVKAIGRLA 366

Query: 67  FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 126
            K   +    +       L+ +L    S +  E V VI +++   P +++       L+ 
Sbjct: 367 EKFPTDAEWCI-----DVLLELLSLAGSYVVDEIVEVIRDIIRKYPELREY-----ILEH 416

Query: 127 VIGLLSSCCSESQREAAL-LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 185
           +  LL    S   R AAL +LG++     +    +++         +L+S  V+L  ++A
Sbjct: 417 LCELLEDIESPEARAAALWILGEYGELIPNSPSDLLRSILEVF---VLESLKVRLALLTA 473

Query: 186 FA 187
             
Sbjct: 474 LV 475

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 153 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 192
             + K  +++ GAV PL+++L SPD +++E +A+AL  LA
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 33/226 (14%)

Query: 81  ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 140
           A+P L  +L  ED  +   A   +G L               A+ P++ LL +  +E  R
Sbjct: 75  AVPLLRELLSDEDPRVRDAAADALGELGDPE-----------AVPPLVELLENDENEGVR 123

Query: 141 E-AALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 198
             AA  LG+     + D  +  +Q          L +  + +R  +A ALG     + + 
Sbjct: 124 AAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE----LGDP 179

Query: 199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV 258
             I        L++LL+ ++  ++  AA AL  L       AD +    V+ L D    V
Sbjct: 180 EAIP------LLIELLEDEDADVRRAAASALGQLGSENVEAADLL----VKALSDESLEV 229

Query: 259 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 304
           +         L  +        ++ L   +   +  +    A AL 
Sbjct: 230 RKA---ALLALGEIG---DEEAVDALAKALEDEDVILALLAAAALG 269

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	548
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.98
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.96
PHA02713	557	hypothetical protein; Provisional	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.96
PHA02790	480	Kelch-like protein; Provisional	99.95
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.95
PHA03098	534	kelch-like protein; Provisional	99.95
KOG4350	620	consensus Uncharacterized conserved protein, conta	99.92
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.88
KOG4591	280	consensus Uncharacterized conserved protein, conta	99.84
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.81
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.8
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	99.79
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.79
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.76
KOG4682	488	consensus Uncharacterized conserved protein, conta	99.75
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.75
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.7
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.69
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.66
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.65
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.65
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.63
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.59
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.57
PRK09687	280	putative lyase; Provisional	99.54
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.53
PRK09687	280	putative lyase; Provisional	99.53
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.49
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.46
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.46
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.42
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.34
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.28
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.26
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.26
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.25
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.17
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.15
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.12
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.1
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.08
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.05
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.05
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.03
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.02
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.0
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.98
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.97
KOG0511	516	consensus Ankyrin repeat protein [General function	98.96
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.94
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.93
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.9
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.85
PTZ00429	746	beta-adaptin; Provisional	98.84
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.78
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.72
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.65
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.63
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.62
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.6
PTZ00429	746	beta-adaptin; Provisional	98.6
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.57
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.57
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.57
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.53
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.53
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.52
TIGR02270	410	conserved hypothetical protein. Members are found	98.49
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.42
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.4
KOG2716	230	consensus Polymerase delta-interacting protein PDI	98.36
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.33
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.33
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.28
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.25
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.2
COG5369	743	Uncharacterized conserved protein [Function unknow	98.17
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.16
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.11
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.1
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.09
KOG2838	401	consensus Uncharacterized conserved protein, conta	98.07
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.07
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.07
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.05
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.04
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.02
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	97.98
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.97
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.97
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.96
COG5369	743	Uncharacterized conserved protein [Function unknow	97.96
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.96
TIGR02270	410	conserved hypothetical protein. Members are found	97.95
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.94
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.94
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.91
PF05536	543	Neurochondrin: Neurochondrin	97.9
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.89
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.88
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.87
PF07707	103	BACK: BTB And C-terminal Kelch; InterPro: IPR01170	97.86
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.85
KOG2838	401	consensus Uncharacterized conserved protein, conta	97.85
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.85
PF05536	543	Neurochondrin: Neurochondrin	97.84
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.81
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.8
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	97.79
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.79
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.77
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.76
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.75
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.75
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.73
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.73
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.71
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.69
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.69
KOG0567	289	consensus HEAT repeat-containing protein [General	97.68
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.56
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.55
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.55
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.54
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.53
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.52
KOG3473	112	consensus RNA polymerase II transcription elongati	97.51
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.51
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.47
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.44
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.42
smart00875	101	BACK BTB And C-terminal Kelch. The BACK domain is	97.41
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.41
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.41
KOG3036	293	consensus Protein involved in cell differentiation	97.34
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.34
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.32
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.32
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.24
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	97.23
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	97.16
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	97.13
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.12
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.11
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.1
KOG3036	293	consensus Protein involved in cell differentiation	97.06
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.97
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.97
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.93
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.91
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	96.89
KOG0567	289	consensus HEAT repeat-containing protein [General	96.88
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.85
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.8
KOG2714	465	consensus SETA binding protein SB1 and related pro	96.79
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.77
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.7
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.69
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.66
KOG2715	210	consensus Uncharacterized conserved protein, conta	96.61
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.59
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.58
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.55
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.54
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.53
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.48
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.46
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.44
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	96.43
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.36
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.33
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	96.33
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.26
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.24
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.22
KOG2956	516	consensus CLIP-associating protein [General functi	96.21
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.15
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.11
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.05
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.01
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	95.95
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.94
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.94
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.9
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.88
PF05004	309	IFRD: Interferon-related developmental regulator (	95.85
PF05004	309	IFRD: Interferon-related developmental regulator (	95.71
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.69
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.69
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.64
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.5
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.45
KOG0511	516	consensus Ankyrin repeat protein [General function	95.4
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.27
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.24
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	95.2
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.19
KOG2062	929	consensus 26S proteasome regulatory complex, subun	95.14
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.05
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	94.98
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.92
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.73
KOG0414	1251	consensus Chromosome condensation complex Condensi	94.66
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	94.66
KOG4653	982	consensus Uncharacterized conserved protein [Funct	94.62
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	94.46
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	94.33
KOG2956	516	consensus CLIP-associating protein [General functi	94.28
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.27
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.25
KOG1778	319	consensus CREB binding protein/P300 and related TA	94.17
KOG0414	1251	consensus Chromosome condensation complex Condensi	94.13
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	93.84
KOG1243	690	consensus Protein kinase [General function predict	93.65
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.63
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.59
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.52
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	93.42
PRK14707	2710	hypothetical protein; Provisional	93.39
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.36
PRK14707	2710	hypothetical protein; Provisional	93.33
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	93.32
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.16
KOG2032	533	consensus Uncharacterized conserved protein [Funct	93.03
COG5116	926	RPN2 26S proteasome regulatory complex component [	93.01
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.96
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	92.91
COG5116	926	RPN2 26S proteasome regulatory complex component [	92.74
KOG1243	690	consensus Protein kinase [General function predict	92.51
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	92.5
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	92.39
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.36
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	92.3
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.28
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	92.22
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	91.82
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	91.79
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	91.76
PF07814	361	WAPL: Wings apart-like protein regulation of heter	91.69
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	91.62
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	91.48
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	91.45
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.25
KOG2933	334	consensus Uncharacterized conserved protein [Funct	90.73
COG5098	1128	Chromosome condensation complex Condensin, subunit	90.54
KOG2137	700	consensus Protein kinase [Signal transduction mech	90.18
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	89.81
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	89.44
KOG2025	892	consensus Chromosome condensation complex Condensi	89.33
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	89.3
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	89.14
KOG2025	892	consensus Chromosome condensation complex Condensi	89.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.52
KOG0301	745	consensus Phospholipase A2-activating protein (con	88.32
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	88.23
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.01
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	87.73
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	87.66
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	87.37
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	87.34
PF08216	108	CTNNBL: Catenin-beta-like, Arm-motif containing nu	87.31
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	87.25
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	87.06
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	86.81
PF07814	361	WAPL: Wings apart-like protein regulation of heter	86.69
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	86.12
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	86.09
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	85.98
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	85.35
KOG2137	700	consensus Protein kinase [Signal transduction mech	85.31
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	85.21
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	85.19
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	85.03
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	84.79
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	84.71
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	83.62
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	83.58
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	82.51
KOG2676	478	consensus Uncharacterized conserved protein [Funct	82.24
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	81.79
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	81.72
COG5656	970	SXM1 Importin, protein involved in nuclear import	81.16
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	80.86
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	80.84
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	80.7
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	80.65
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	80.26

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-33  Score=265.38  Aligned_cols=344  Identities=22%  Similarity=0.296  Sum_probs=292.7

Q ss_pred             hHHHHHHHHHHHHHhh--hChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940           10 NSVIRRAADAITNLAH--ENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +..+..+...+..+..  .+|.....+. .|.++.+++.|.. .++.++..|+++|.|+++++.+....+++.|.++.++
T Consensus        80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~-~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi  158 (514)
T KOG0166|consen   80 PQQQLTATQAFRKLLSKERNPPIDEVIQ-SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI  158 (514)
T ss_pred             HHHHHHHHHHHHHHHccCCCCCHHHHHH-cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHH
Confidence            3446677777777752  4556666555 4999999999975 4599999999999999999999999999999999999


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCCh-HHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                      .++.+++..+++.|+|+|+|++.+++.+|+.+...|+++.|+.++...++ ...+.+.|+|.|+|++.......-.-..+
T Consensus       159 ~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~i  238 (514)
T KOG0166|consen  159 QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPI  238 (514)
T ss_pred             HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999988776 78899999999999987444443344579


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc-chHHHH
Q 008940          166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFI  243 (548)
Q Consensus       166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~  243 (548)
                      +|.|..++.+.|+++...|+|++++|+.+... -..+++.|.++.|+.+|.+.++.++..|+.+++|++...+ ....++
T Consensus       239 Lp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi  318 (514)
T KOG0166|consen  239 LPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI  318 (514)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH
Confidence            99999999999999999999999999977765 4567788999999999999999999999999999977544 556667


Q ss_pred             HhcCcccccccchhh----hhhhHHHH------HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc--
Q 008940          244 RVGGVQKLQDGEFIV----QATKDCVA------KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--  311 (548)
Q Consensus       244 ~~g~i~~L~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~--  311 (548)
                      ..|+++.|.......    .....|+.      ++.++++.+++++++|.|+.+|++++...|++|+|+++|++.+..  
T Consensus       319 ~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~  398 (514)
T KOG0166|consen  319 NSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPE  398 (514)
T ss_pred             hcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHH
Confidence            889998876644422    22345553      456889999999999999999999999999999999999987544  


Q ss_pred             cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcccc
Q 008940          312 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTL  354 (548)
Q Consensus       312 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  354 (548)
                      .-..+++.|.++.|+.+|.-.+.++...+..++.++....+..
T Consensus       399 qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~  441 (514)
T KOG0166|consen  399 QIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE  441 (514)
T ss_pred             HHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence            4478999999999999998888888888889999887765443

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.1e-31  Score=237.80  Aligned_cols=338  Identities=21%  Similarity=0.250  Sum_probs=279.8

Q ss_pred             HHHHHHHHHHH-hhhChhhHHHHHhcCCchHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc
Q 008940           13 IRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR   90 (548)
Q Consensus        13 ~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~   90 (548)
                      +.+|..-...+ +++...--..+++.|.+|.+++++ +....-.+..|+++|.|++++.......+++.|.+|.++++|.
T Consensus        88 q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~  167 (526)
T COG5064          88 QLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS  167 (526)
T ss_pred             HHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc
Confidence            34444444444 443333344578899999999999 4556778999999999999998889999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCCh--HHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           91 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        91 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                      +++.+++++++|+|+|++.+++.+|+.+.+.|++..++.++.++..  .+.+++.|+|+|||++.......-.-...+|.
T Consensus       168 s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpi  247 (526)
T COG5064         168 STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPI  247 (526)
T ss_pred             CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987665  78899999999999886554444334468899


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCcch-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHHHHhc
Q 008940          169 LIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVG  246 (548)
Q Consensus       169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~g  246 (548)
                      |.+++-+.|+++...|+|+++.|+..+..+ ..+.+.|....|+++|.+++..++..++..++|+... +.....++.+|
T Consensus       248 L~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G  327 (526)
T COG5064         248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCG  327 (526)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecc
Confidence            999999999999999999999999887664 5567778888899999999999999999999999765 45556677889


Q ss_pred             Ccccccccch---hhhhhhHHH------HHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc----cc
Q 008940          247 GVQKLQDGEF---IVQATKDCV------AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD----QR  313 (548)
Q Consensus       247 ~i~~L~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~----~~  313 (548)
                      .++.+.....   .-.....|+      +++.++++.+++++.+|+|+.+|.+.+..++++|||++.|...+..    .-
T Consensus       328 ~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~i  407 (526)
T COG5064         328 ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDII  407 (526)
T ss_pred             cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHH
Confidence            8876544322   223345676      4567999999999999999999999999999999999999987643    34


Q ss_pred             eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          314 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       314 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +.+++.|.+..|+.+|.-.+..+-.-+..++.|+...
T Consensus       408 ryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~  444 (526)
T COG5064         408 RYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV  444 (526)
T ss_pred             HHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence            6889999999999999977776766667777776654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.98  E-value=1.4e-30  Score=285.96  Aligned_cols=337  Identities=20%  Similarity=0.184  Sum_probs=292.8

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ....++|.+++++|.+++.++++.+..+.+.|+++.|+++|++++..+|..|+++|++++.++++++..+.+.|+++.|+
T Consensus       415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV  494 (2102)
T PLN03200        415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLV  494 (2102)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence            44578999999999999988899999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      ++|.+++..+++.|+|+|+|++.++++++..+.+.|+++.|+++|.+.+++.++.++|+|.+++...+.        ..+
T Consensus       495 ~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~--------~~I  566 (2102)
T PLN03200        495 QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA--------ATI  566 (2102)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch--------hHH
Confidence            999999999999999999999998778888888899999999999999999999999999999865322        244


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh----hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc-CCcchHH
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA----GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVAD  241 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~  241 (548)
                      +.++.++.++++.++..++.+|+++....+...    .....|+++.|.++++++++.+++.|+++|.+++. +++....
T Consensus       567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~a  646 (2102)
T PLN03200        567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCES  646 (2102)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence            889999999999999999999999875444322    12356899999999999999999999999999976 4566788


Q ss_pred             HHHhcCcccccccch----hhhhhhHHHHH------HHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc
Q 008940          242 FIRVGGVQKLQDGEF----IVQATKDCVAK------TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD  311 (548)
Q Consensus       242 ~~~~g~i~~L~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~  311 (548)
                      ++..|++++|+....    .......+.-.      .-++...+++.|++++|+.+|++.+.+++..|+.+|.|++..++
T Consensus       647 vv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e  726 (2102)
T PLN03200        647 LATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE  726 (2102)
T ss_pred             HHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence            899999999876333    22222222211      12344556789999999999999999999999999999999999


Q ss_pred             cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          312 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       312 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      .+..+.+.|+++.|++++++++++.|+.|+++|.+|+.+.
T Consensus       727 ~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~  766 (2102)
T PLN03200        727 VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHF  766 (2102)
T ss_pred             HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence            9988899999999999999999999999999999998765

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=4.8e-30  Score=281.69  Aligned_cols=345  Identities=22%  Similarity=0.277  Sum_probs=281.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ..++..+..|+.+|.+++.+.++.+..+.+.|++|.|+++|+++ ++.+|+.|+++|++++.++++++..+++.|+++.|
T Consensus       200 S~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~L  279 (2102)
T PLN03200        200 SGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPAL  279 (2102)
T ss_pred             CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence            34578999999999999977788899999999999999999864 57999999999999999889999999999999999


Q ss_pred             HHHhccCC---------hHHHHHHHHHHHHhhcCChh-----------H-------------------------------
Q 008940           86 ILMLRSED---------SAIHYEAVGVIGNLVHSSPN-----------I-------------------------------  114 (548)
Q Consensus        86 v~ll~~~~---------~~v~~~a~~~L~~l~~~~~~-----------~-------------------------------  114 (548)
                      ++++..++         ..+++.|+|+|+|+|.+.+.           .                               
T Consensus       280 I~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~  359 (2102)
T PLN03200        280 INATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFD  359 (2102)
T ss_pred             HHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhcc
Confidence            99998654         34699999999999875211           0                               


Q ss_pred             -------------------------------------HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH
Q 008940          115 -------------------------------------KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK  157 (548)
Q Consensus       115 -------------------------------------~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  157 (548)
                                                           ++.+.+.|+++.|+.++...+.+++..++++|++++.++.+.+
T Consensus       360 ~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~  439 (2102)
T PLN03200        360 PTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLW  439 (2102)
T ss_pred             ccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHH
Confidence                                                 0011122444555556666667899999999999998888999


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940          158 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       158 ~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  236 (548)
                      ..+.+.|+++.|+++|.++++.+++.++++|++++... +++..+.+.|++++|+++|.+++..+++.|+|+|+|++.++
T Consensus       440 ~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~  519 (2102)
T PLN03200        440 EALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS  519 (2102)
T ss_pred             HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999765 45778999999999999999999999999999999999887


Q ss_pred             cchHHHH-HhcCcccccccchhhhhh-hHHHHHH----------------------------------HHHH--------
Q 008940          237 DNVADFI-RVGGVQKLQDGEFIVQAT-KDCVAKT----------------------------------LKRL--------  272 (548)
Q Consensus       237 ~~~~~~~-~~g~i~~L~~~~~~~~~~-~~~~~~~----------------------------------~~~~--------  272 (548)
                      ++...++ +.|++++|++...+.... ......+                                  +.++        
T Consensus       520 ~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d  599 (2102)
T PLN03200        520 EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLED  599 (2102)
T ss_pred             HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence            6666665 679999876522211000 0011111                                  1111        


Q ss_pred             ---HHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940          273 ---EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA  348 (548)
Q Consensus       273 ---~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  348 (548)
                         +.....++++.|+.+++++++.+++.|+|+|.+++.+. +....++..|+++.|+.++++++.++++.++|+|.+++
T Consensus       600 ~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~  679 (2102)
T PLN03200        600 LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS  679 (2102)
T ss_pred             HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence               11123578999999999999999999999999998764 45677899999999999999999999999999999999


Q ss_pred             hhc
Q 008940          349 NKA  351 (548)
Q Consensus       349 ~~~  351 (548)
                      ...
T Consensus       680 ~~~  682 (2102)
T PLN03200        680 RSI  682 (2102)
T ss_pred             hCC
Confidence            753

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-30  Score=233.19  Aligned_cols=309  Identities=28%  Similarity=0.396  Sum_probs=280.8

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR   90 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~   90 (548)
                      ++|..+..++.+|+. -+++|..+...|++.++.++-++.+..+|..+..+|.+++. ..++++.++..|+++.|+.+++
T Consensus       141 evqcnaVgCitnLaT-~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~  218 (550)
T KOG4224|consen  141 EVQCNAVGCITNLAT-FDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLK  218 (550)
T ss_pred             EEEeeehhhhhhhhc-cccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhc
Confidence            567788999999995 48889999999999999998899999999999999999996 7999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhhcCChhHHHHHHhcC--ChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           91 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        91 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                      +.+.++|..++.++++++.+ ...|+.+.+.+  .+|.|++++.+++++++-.|..+|.+++++ .+++..+++.|.+|.
T Consensus       219 s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~  296 (550)
T KOG4224|consen  219 SGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPL  296 (550)
T ss_pred             cCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchH
Confidence            99999999999999999876 66688888877  999999999999999999999999999866 677888999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-hhHHHHHHHHHHhccc-CCcchHHHHHhc
Q 008940          169 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLAD-NEDNVADFIRVG  246 (548)
Q Consensus       169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~~~~~g  246 (548)
                      ++++++++.-........|+.|++..+-+...+.+.|++.+|+++|+.++ .+++.+|..+|++|+. .+.+...+.+.|
T Consensus       297 lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg  376 (550)
T KOG4224|consen  297 LVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG  376 (550)
T ss_pred             HHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC
Confidence            99999998777888889999999999999889999999999999999765 6699999999999976 566666665544


Q ss_pred             CcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHH
Q 008940          247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL  326 (548)
Q Consensus       247 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~  326 (548)
                                                       .++.+..++.++...+|.....++..|+.++..+..+.+.|.++.|+
T Consensus       377 ---------------------------------Ai~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLI  423 (550)
T KOG4224|consen  377 ---------------------------------AIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILI  423 (550)
T ss_pred             ---------------------------------chHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceee
Confidence                                             77788899999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCccchhhHHHHHHHhhhcccccc
Q 008940          327 GLLGSTNPKQQLDGAVALFKLANKATTLSS  356 (548)
Q Consensus       327 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  356 (548)
                      .+..+.+.+++.+|+.+|.|++++...+..
T Consensus       424 p~t~s~s~Ev~gNaAaAL~Nlss~v~~Yar  453 (550)
T KOG4224|consen  424 PWTGSESEEVRGNAAAALINLSSDVEHYAR  453 (550)
T ss_pred             cccCccchhhcccHHHHHHhhhhhhHHHHH
Confidence            999999999999999999999997655543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.1e-29  Score=237.39  Aligned_cols=343  Identities=18%  Similarity=0.245  Sum_probs=292.5

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ...|.++..|+++|.+++.+..+.-..+++.|.+|.++.++.+++..+++.|+++|+|++.+++..|..+.+.|++++|+
T Consensus       121 ~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl  200 (514)
T KOG0166|consen  121 DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLL  200 (514)
T ss_pred             CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHH
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCh-HHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           87 LMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        87 ~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                      .++..++. ...+.+.|+|.|+|.+....-..-.-..++|.|..++.+.|+++...|+|++++|+.+..+..+.+++.|+
T Consensus       201 ~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gv  280 (514)
T KOG0166|consen  201 RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGV  280 (514)
T ss_pred             HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccc
Confidence            99987665 78889999999999876211111222357999999999999999999999999999888899999999999


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh-hhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhccc-CCcchHHH
Q 008940          166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLAD-NEDNVADF  242 (548)
Q Consensus       166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~~  242 (548)
                      ++.|+++|.+.++.++..|+++++|++.+.+.+. .+++.|+++.|..++. ++...+++.|||+|+|++. +.+....+
T Consensus       281 v~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaV  360 (514)
T KOG0166|consen  281 VPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAV  360 (514)
T ss_pred             hHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHH
Confidence            9999999999999999999999999998888764 4678899999999998 5566799999999999966 56678888


Q ss_pred             HHhcCcccccc----cchhhhhhhHHH------HHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC---
Q 008940          243 IRVGGVQKLQD----GEFIVQATKDCV------AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP---  309 (548)
Q Consensus       243 ~~~g~i~~L~~----~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~---  309 (548)
                      +..|++|.|+.    .+|.......|.      .++.+++..+++.|+++++..+|.-.|..+...++.+|.++-..   
T Consensus       361 ida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~  440 (514)
T KOG0166|consen  361 IDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA  440 (514)
T ss_pred             HHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence            99999998865    455555544443      23568888999999999999999888888888899999988532   


Q ss_pred             ------CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          310 ------DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       310 ------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                            ......+-+.||+..+-.|-.+.+.++-..|...+-+...
T Consensus       441 ~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~  486 (514)
T KOG0166|consen  441 EKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS  486 (514)
T ss_pred             hccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence                  1123567788999999999999998887777766665544

>PHA02713 hypothetical protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=252.02  Aligned_cols=160  Identities=19%  Similarity=0.291  Sum_probs=148.8

Q ss_pred             chHhhhcCCCCccEEEEeC-CeEEEchHHHHhcccHHHHhhhcCCCCCCC-CCceecCCCCHHHHHHHHHHHhcCccccc
Q 008940          370 LGDQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKD-ARDIEIPNIRWEVFELMMRFIYTGSVDVT  447 (548)
Q Consensus       370 ~~~~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~  447 (548)
                      ..++++.++.+|||++.++ |+.|+|||.|||++|+||++||+++++|+. +.+|.|+++++++|+.+|+|+|||+  ++
T Consensus        15 ~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~   92 (557)
T PHA02713         15 NISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--IS   92 (557)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CC
Confidence            3467899999999999998 899999999999999999999999999864 7899999999999999999999997  68


Q ss_pred             hHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcH
Q 008940          448 LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRII  527 (548)
Q Consensus       448 ~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~  527 (548)
                      .+++++++.+|++|+++.+++.|++||.++++++||+.++.++..+++..|.+.|.+||.+||.++.++++|.+|+.+.+
T Consensus        93 ~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l  172 (557)
T PHA02713         93 SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEIL  172 (557)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHH
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999966554


Q ss_pred             HHHH
Q 008940          528 PEIH  531 (548)
Q Consensus       528 ~~~~  531 (548)
                      .+++
T Consensus       173 ~~lL  176 (557)
T PHA02713        173 FDII  176 (557)
T ss_pred             HHHh
Confidence            4433

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7e-28  Score=215.71  Aligned_cols=307  Identities=21%  Similarity=0.272  Sum_probs=270.9

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcC--ChHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLI   86 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~Lv   86 (548)
                      ...+|+.+..+|.+++ ...++|..++..|++|.|+.++++++..+|.+++.++.+++- +..+++.+.+.+  .++.|+
T Consensus       180 dirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv  257 (550)
T KOG4224|consen  180 DIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALV  257 (550)
T ss_pred             hhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHH
Confidence            3578999999999999 678999999999999999999999999999999999999997 688999999887  999999


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      +++.++++.++..|..+|++++++ .+.+..+++.|.+|.++++++++.-......+.++.|++.+ +.+...+++.|++
T Consensus       258 ~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl  335 (550)
T KOG4224|consen  258 DLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFL  335 (550)
T ss_pred             HHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccch
Confidence            999999999999999999999877 55678899999999999999998888888888999999754 7888889999999


Q ss_pred             HHHHHhhCCC-CHHHHHHHHHHHHHhhc-CCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHH
Q 008940          167 RPLIEMLQSP-DVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR  244 (548)
Q Consensus       167 ~~L~~ll~~~-~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  244 (548)
                      .+|+.+|+.+ +++++.+|..+|+||+. ...++..+.+.|+++.+..++.++...++.....+++.|+-++..+..+.+
T Consensus       336 ~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld  415 (550)
T KOG4224|consen  336 RPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLD  415 (550)
T ss_pred             hHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhh
Confidence            9999999985 45699999999999996 556788999999999999999999999999999999999999988888877


Q ss_pred             hcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec------
Q 008940          245 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID------  318 (548)
Q Consensus       245 ~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~------  318 (548)
                      .|+++.                                 |+.++.+.+.+++.+|+.+|.|++.+-++-..+.+      
T Consensus       416 ~gi~~i---------------------------------LIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~  462 (550)
T KOG4224|consen  416 SGIIPI---------------------------------LIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV  462 (550)
T ss_pred             cCCcce---------------------------------eecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc
Confidence            775554                                 45778888999999999999999987553322222      


Q ss_pred             CCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          319 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       319 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      .|.-..|.+.+.+.+..++.-+.|++..|.+...
T Consensus       463 ~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  463 QGIQGRLARFLASHELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence            3555788999999888889999999999998643

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.96  E-value=3.2e-28  Score=247.64  Aligned_cols=160  Identities=28%  Similarity=0.422  Sum_probs=153.7

Q ss_pred             chHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchH
Q 008940          370 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD  449 (548)
Q Consensus       370 ~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~  449 (548)
                      ..+.++..+.+|||++.+++++|+|||.|||++||||++||+++++|+.+.+|.+.++++++++.+++|+|||++.++.+
T Consensus        26 ~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~  105 (571)
T KOG4441|consen   26 GLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISED  105 (571)
T ss_pred             HHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHH
Q 008940          450 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE  529 (548)
Q Consensus       450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~  529 (548)
                      ++++|+.+|++||++.+++.|.+||.++++++||+.+..+|+.|++.+|.+.+..|+.+||.++.++++|.+|+.+.+.+
T Consensus       106 nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~  185 (571)
T KOG4441|consen  106 NVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIG  185 (571)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999996654333

>PHA02790 Kelch-like protein; Provisional

Probab=99.95  E-value=2e-28  Score=247.23  Aligned_cols=150  Identities=17%  Similarity=0.204  Sum_probs=139.8

Q ss_pred             hhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceec--CCCCHHHHHHHHHHHhcCccccchHh
Q 008940          373 QFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI--PNIRWEVFELMMRFIYTGSVDVTLDI  450 (548)
Q Consensus       373 ~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Yt~~~~~~~~~  450 (548)
                      .++..+.+||+++.. |+.|+|||.|||++|||||+||+++++|+.+ +|.+  .++++++++.+|+|+|||++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~n   92 (480)
T PHA02790         15 ALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHN   92 (480)
T ss_pred             HHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEeccc
Confidence            466789999998754 5589999999999999999999999999954 5665  48999999999999999999999999


Q ss_pred             HHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCc--chhHhchh
Q 008940          451 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTR--PGHSNLIQ  524 (548)
Q Consensus       451 ~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~--~~f~~l~~  524 (548)
                      +++++.+|++||++.+++.|++||.++++++||+.++.+|+.|++++|.+.+.+||.+||.++.++  ++|.+|+.
T Consensus        93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~  168 (480)
T PHA02790         93 VVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM  168 (480)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH
Confidence            999999999999999999999999999999999999999999999999999999999999999986  89998863

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.95  E-value=2.1e-28  Score=217.20  Aligned_cols=316  Identities=20%  Similarity=0.283  Sum_probs=261.3

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhc-cCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHHH
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      -+|.|.+-|-++|.+.+..|..-++.+.+ ....-.+.+++.|.++.+++++. ....-++-.|+|+|.|++++......
T Consensus        72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk  151 (526)
T COG5064          72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK  151 (526)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence            45778888888899999999888887765 34445678889999999999995 56677888999999999999888778


Q ss_pred             HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCH--HHHHHHHHHHHHhhcC
Q 008940          117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV--QLREMSAFALGRLAQD  194 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~--~v~~~a~~~L~~l~~~  194 (548)
                      .+++.|++|.++++|.+.+.++++.++|+|+|++-+++.+|+.+.+.|++++++.++.++..  .+...+.|+|+|||..
T Consensus       152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG  231 (526)
T COG5064         152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG  231 (526)
T ss_pred             EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence            88899999999999999999999999999999999999999999999999999999988655  6789999999999977


Q ss_pred             Ccchhh-hHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch-HHHHHhcCcccccccch----hhhhhh-H----
Q 008940          195 MHNQAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEF----IVQATK-D----  263 (548)
Q Consensus       195 ~~~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~~~~----~~~~~~-~----  263 (548)
                      ...... -.-...++.|.+++.+.++++...|+|+++.|+..+..+ ..+...|....|+....    .+++.. +    
T Consensus       232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN  311 (526)
T COG5064         232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN  311 (526)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence            644322 222357889999999999999999999999999876544 55567777666554221    222211 1    


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHHHHhhcCCCCccchhhHH
Q 008940          264 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV  342 (548)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  342 (548)
                      .+.++-.+.+.+++.|+++.+..+|.++...+|++|||++.|+..+. ++-+.+++.+.+|.|+.+|.+.+..+++.|||
T Consensus       312 IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACW  391 (526)
T COG5064         312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW  391 (526)
T ss_pred             eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence            11233456678899999999999999988899999999999997654 56688999999999999999999999999999


Q ss_pred             HHHHHhhhcccc
Q 008940          343 ALFKLANKATTL  354 (548)
Q Consensus       343 ~L~~l~~~~~~~  354 (548)
                      ++.|...+...+
T Consensus       392 AisNatsgg~~~  403 (526)
T COG5064         392 AISNATSGGLNR  403 (526)
T ss_pred             HHHhhhccccCC
Confidence            999998876554

>PHA03098 kelch-like protein; Provisional

Probab=99.95  E-value=5.7e-27  Score=242.66  Aligned_cols=150  Identities=23%  Similarity=0.424  Sum_probs=143.7

Q ss_pred             CCCCccEEEEe--CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHH
Q 008940          377 NATLSDVTFLV--EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDL  454 (548)
Q Consensus       377 ~~~~~Dv~~~~--~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~l  454 (548)
                      ++.+||+++.+  +|++|+|||.||+++|+||++||.++++   +.+|.+++ ++++|+.+|+|+|||++.++.+++.+|
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l   81 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI   81 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence            88999999998  9999999999999999999999999888   56899999 999999999999999999999999999


Q ss_pred             HHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHHH
Q 008940          455 LRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI  530 (548)
Q Consensus       455 l~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~  530 (548)
                      +.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|+.+.+.++
T Consensus        82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~l  157 (534)
T PHA03098         82 LSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKI  157 (534)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987655544

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.92  E-value=1.6e-25  Score=202.61  Aligned_cols=160  Identities=30%  Similarity=0.508  Sum_probs=152.2

Q ss_pred             HhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccc---h
Q 008940          372 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT---L  448 (548)
Q Consensus       372 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~---~  448 (548)
                      .+++...+++||+|+++++.|+|||.|||+||.|||+|+.++|.|+.+..|++++...++|+.+|+|||||++.++   +
T Consensus        36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e  115 (620)
T KOG4350|consen   36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE  115 (620)
T ss_pred             HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH
Confidence            4567789999999999999999999999999999999999999999999999999999999999999999999864   6


Q ss_pred             HhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHH
Q 008940          449 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP  528 (548)
Q Consensus       449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~  528 (548)
                      +...+.+.+|++|++++|.....+++.+.+..+|++.+++.|..|+.++|.+.|.-|.-+|..++...+.|..|+++.+.
T Consensus       116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~  195 (620)
T KOG4350|consen  116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLK  195 (620)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             HHH
Q 008940          529 EIH  531 (548)
Q Consensus       529 ~~~  531 (548)
                      ++.
T Consensus       196 e~l  198 (620)
T KOG4350|consen  196 ELL  198 (620)
T ss_pred             HHH
Confidence            764

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.88  E-value=1.6e-20  Score=191.40  Aligned_cols=337  Identities=18%  Similarity=0.203  Sum_probs=265.4

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      +..+.+.+...|.+++ .++.+...+.+.|+++.|+++|++++.++...++.+|.+|+. ..+|+..+.+.|+++.|+++
T Consensus       262 QeqLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kL  339 (708)
T PF05804_consen  262 QEQLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKL  339 (708)
T ss_pred             HHHHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHH
Confidence            3456677888899999 788999999999999999999999999999999999999998 68899999999999999999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                      +.+++.+++..++++|.||+.+ ++.|..++..|++|.|+.++.++  ..+..+..+|.+++. +++.+..+...+++|.
T Consensus       340 l~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~  415 (708)
T PF05804_consen  340 LPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQ  415 (708)
T ss_pred             hcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHH
Confidence            9999999999999999999866 78899999999999999999864  455678899999975 4678888888999999


Q ss_pred             HHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh---------------------------------
Q 008940          169 LIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL---------------------------------  214 (548)
Q Consensus       169 L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll---------------------------------  214 (548)
                      +++++-+ +++.+...++..+.|++.+..+...+.+.++++.|+...                                 
T Consensus       416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L  495 (708)
T PF05804_consen  416 LMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDL  495 (708)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            9998655 566677777888888888887776666666666554322                                 


Q ss_pred             ----cC-CChhHHHHHHHHHHhcccCC-cchHHHHHhcCcccccccchhhhhhhHH------HHHH----HHHHHHhhhh
Q 008940          215 ----DS-KNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDC------VAKT----LKRLEEKIHG  278 (548)
Q Consensus       215 ----~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~~------~~~~----~~~~~~~~~~  278 (548)
                          .. .+++....++++|+||...+ ++...+.+.+.+|-|.+....-....+.      ..++    .+....+.+.
T Consensus       496 ~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~s  575 (708)
T PF05804_consen  496 AKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKS  575 (708)
T ss_pred             HHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence                22 24556667778888886543 4444444557666554322111011111      1111    2334555678


Q ss_pred             hhhHHHHHHHHh--hhhhhhhhHHHHhhhccCCCccceeeec-CCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          279 RVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       279 ~~~~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      |+++.|+.+|..  .|.++..+.++++.++..+++.|..++. .+++..|+.+++++|+.+|+.|-.+|--+++..
T Consensus       576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d  651 (708)
T PF05804_consen  576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD  651 (708)
T ss_pred             ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            999999999998  5788999999999999999887766544 678899999999999999999888888887754

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.84  E-value=2e-20  Score=153.11  Aligned_cols=153  Identities=24%  Similarity=0.471  Sum_probs=132.5

Q ss_pred             hHhhhcCCCCccEEEEeCC---eEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccc
Q 008940          371 GDQFVNNATLSDVTFLVEG---RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT  447 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~---~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~  447 (548)
                      -..++.+..|+|++|.++|   +.++|||.||++||++|+  |.++..| ......++|.++++|...++||||+++++.
T Consensus        57 tadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t~iRWIYTDEidfk  133 (280)
T KOG4591|consen   57 TADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHTAIRWIYTDEIDFK  133 (280)
T ss_pred             HHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHHhheeeeccccccc
Confidence            3457789999999999984   889999999999999987  3322222 234677889999999999999999999876


Q ss_pred             h--HhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhh
Q 008940          448 L--DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQR  525 (548)
Q Consensus       448 ~--~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~  525 (548)
                      .  +.+.++.+.|+.|+++-|+..|+.-+...++++||+.+|++|+..++..|++.|.+.|+-+|+++.+ ..|.+++..
T Consensus       134 ~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~-a~FaqMs~a  212 (280)
T KOG4591|consen  134 EDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGK-ADFAQMSAA  212 (280)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccCh-HHHHhccHH
Confidence            4  4578999999999999999999999999999999999999999999999999999999999999865 678888555


Q ss_pred             cH
Q 008940          526 II  527 (548)
Q Consensus       526 ~~  527 (548)
                      ++
T Consensus       213 LL  214 (280)
T KOG4591|consen  213 LL  214 (280)
T ss_pred             HH
Confidence            43

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.81  E-value=3.5e-18  Score=174.42  Aligned_cols=301  Identities=21%  Similarity=0.221  Sum_probs=245.1

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcC
Q 008940           43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG  122 (548)
Q Consensus        43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  122 (548)
                      +-.+++. ...+...+...|.|++. ++.....+.+.|+++.|+++|..++.++...++.+|.+|+.. .+++..+.+.|
T Consensus       255 ~~~l~~k-QeqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~g  331 (708)
T PF05804_consen  255 LQTLIRK-QEQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESG  331 (708)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcC
Confidence            3334444 34555688899999998 799999999999999999999999999999999999999866 67799999999


Q ss_pred             ChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhH
Q 008940          123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA  202 (548)
Q Consensus       123 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  202 (548)
                      +++.|.+++.+++.+++..++++|.||+ .++..+..+++.|++|.|+.+|.++  ..+..++.+|.+++.+++.+..+.
T Consensus       332 iV~kL~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~  408 (708)
T PF05804_consen  332 IVEKLLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFA  408 (708)
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHh
Confidence            9999999999999999999999999997 4588899999999999999999865  567789999999999999999999


Q ss_pred             hcCChHHHHHhhcC-CChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh-----
Q 008940          203 HNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI-----  276 (548)
Q Consensus       203 ~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----  276 (548)
                      ..++++.+++++.+ +++.+...++..+.|++.++.+.+.+.+.|+++.|++..+...  .....+.+.++..--     
T Consensus       409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~--D~lLlKlIRNiS~h~~~~k~  486 (708)
T PF05804_consen  409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR--DPLLLKLIRNISQHDGPLKE  486 (708)
T ss_pred             hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc--cHHHHHHHHHHHhcCchHHH
Confidence            99999999887655 5677777889999999999999999999999998886544322  222333333332111     


Q ss_pred             -hhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHHHHhhcCC--CCccchhhHHHHHHHhhhc
Q 008940          277 -HGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGST--NPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       277 -~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~  351 (548)
                       -.+++..|+.++.. .+++...+++++|+|+...+ +..+.+.+.+.+|.|..+|..+  ++++...+...++.++.+.
T Consensus       487 ~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~  566 (708)
T PF05804_consen  487 LFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP  566 (708)
T ss_pred             HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence             12477777787776 57889999999999998654 3455666789999999999753  4567888888888887653

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.80  E-value=3e-19  Score=143.85  Aligned_cols=106  Identities=32%  Similarity=0.661  Sum_probs=95.7

Q ss_pred             HhhhcCCCCccEEEEeC-CeEEEchHHHHhcccHHHHhhhcCC-CCCCCCCceecCCCCHHHHHHHHHHHhcCccccc-h
Q 008940          372 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT-L  448 (548)
Q Consensus       372 ~~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~-~  448 (548)
                      ++++.++.++|+++.++ +.+|++||.+|+++|+||+.||.+. +.+....+|.++++++++|..+++|+|+|++.++ .
T Consensus         2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~   81 (111)
T PF00651_consen    2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSD   81 (111)
T ss_dssp             HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-T
T ss_pred             hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHH
Confidence            46788899999999999 8999999999999999999999987 5666666899999999999999999999999998 9


Q ss_pred             HhHHHHHHHHHHhChHhHHHHHHHHHHhc
Q 008940          449 DIAQDLLRAADQYLLEGLKRLCEYTIAQD  477 (548)
Q Consensus       449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~~~  477 (548)
                      +++.+++.+|++|+++.|++.|+.+|.++
T Consensus        82 ~~~~~ll~lA~~~~~~~L~~~~~~~l~~~  110 (111)
T PF00651_consen   82 ENVEELLELADKLQIPELKKACEKFLQES  110 (111)
T ss_dssp             TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence            99999999999999999999999999764

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=99.79  E-value=2.6e-18  Score=160.22  Aligned_cols=162  Identities=28%  Similarity=0.455  Sum_probs=145.2

Q ss_pred             hhhcCCCCccEEEEeCC-----eEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccc
Q 008940          373 QFVNNATLSDVTFLVEG-----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT  447 (548)
Q Consensus       373 ~~~~~~~~~Dv~~~~~~-----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~  447 (548)
                      .++++...+|+.|++++     ..+++||.+|+..|+.|.+||.+++.+....+|.+||+.|.+|..+|+|+|++.+.+.
T Consensus       107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~  186 (521)
T KOG2075|consen  107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLA  186 (521)
T ss_pred             hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhh
Confidence            35678889999999983     6899999999999999999999999999888999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHH-HHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhc
Q 008940          448 LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL-SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRI  526 (548)
Q Consensus       448 ~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~-a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~  526 (548)
                      .+++..++.+|++|.++.|.+.|.++|...+-..|.+..+.- |..++-++|...|++-|..+|.+..+.++|.++... 
T Consensus       187 ~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~-  265 (521)
T KOG2075|consen  187 ADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDST-  265 (521)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhH-
Confidence            999999999999999999999999999998887776665555 999999999999999999999999999999998633 


Q ss_pred             HHHHHHHHH
Q 008940          527 IPEIHNYFA  535 (548)
Q Consensus       527 ~~~~~~~l~  535 (548)
                      ...+.+.++
T Consensus       266 ~dt~~evl~  274 (521)
T KOG2075|consen  266 RDTYEEVLR  274 (521)
T ss_pred             HHHHHHHHh
Confidence            333444333

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.79  E-value=4e-18  Score=169.61  Aligned_cols=315  Identities=26%  Similarity=0.304  Sum_probs=239.7

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcc--hhhHhhhcCChH
Q 008940            6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALP   83 (548)
Q Consensus         6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~   83 (548)
                      ....|.++..|+..+..+|+++...+..+.+.|+|+.|+.+|.+.+.+|+..|+.+|.||+.++..  |+-.+.+.++++
T Consensus       243 ~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~  322 (717)
T KOG1048|consen  243 MSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVP  322 (717)
T ss_pred             hccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChH
Confidence            445578899999999999999999999999999999999999999999999999999999986555  999999999999


Q ss_pred             HHHHHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc--------------CChHHHHHHHHHHHH
Q 008940           84 TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--------------CCSESQREAALLLGQ  148 (548)
Q Consensus        84 ~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--------------~~~~~~~~a~~~L~~  148 (548)
                      .++++|+. .|.++++.+..+|+||++. +.++..++.. .+..|..-+-.              .+.++..++..+|.|
T Consensus       323 ~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRN  400 (717)
T KOG1048|consen  323 TLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRN  400 (717)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhcc
Confidence            99999985 7999999999999999876 6666666654 34444443321              125688999999999


Q ss_pred             hhcCCchhHHHHHh-cCChHHHHHhhCC------CCHHHHHHHHHHHHHhhcCCc-----ch------------------
Q 008940          149 FAATDSDCKVHIVQ-RGAVRPLIEMLQS------PDVQLREMSAFALGRLAQDMH-----NQ------------------  198 (548)
Q Consensus       149 l~~~~~~~~~~~~~-~g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~-----~~------------------  198 (548)
                      +++...+.++.+.+ .|.|+.|+..++.      .+....+++...|.||+.--+     ..                  
T Consensus       401 lSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~  480 (717)
T KOG1048|consen  401 LSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAE  480 (717)
T ss_pred             ccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCccc
Confidence            99888888888877 7899999998862      356788999999999984322     00                  


Q ss_pred             ---------hh----------------------hHhcCChHHHHHhh-cCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940          199 ---------AG----------------------IAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVG  246 (548)
Q Consensus       199 ---------~~----------------------~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g  246 (548)
                               +.                      +....++..-+.++ .+.++.+.+.++.+|-|++.....-...+...
T Consensus       481 ~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~  560 (717)
T KOG1048|consen  481 SVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGA  560 (717)
T ss_pred             ccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhh
Confidence                     00                      00001122212223 24566777777788888854322211111111


Q ss_pred             CcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHH
Q 008940          247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL  326 (548)
Q Consensus       247 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~  326 (548)
                                                 .......++.++.+++.++..+...++.+|.|++.+..++..+- .++++.|+
T Consensus       561 ---------------------------v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv  612 (717)
T KOG1048|consen  561 ---------------------------VFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLV  612 (717)
T ss_pred             ---------------------------hhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHH
Confidence                                       11344578999999999999999999999999999999987666 78999999


Q ss_pred             HhhcCCCC------ccchhhHHHHHHHhhh
Q 008940          327 GLLGSTNP------KQQLDGAVALFKLANK  350 (548)
Q Consensus       327 ~ll~~~~~------~v~~~a~~~L~~l~~~  350 (548)
                      +.|....+      ++...++.+|.++..+
T Consensus       613 ~~Lp~~~~~~~~sedtv~~vc~tl~niv~~  642 (717)
T KOG1048|consen  613 RCLPGSGPSTSLSEDTVRAVCHTLNNIVRK  642 (717)
T ss_pred             HhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence            99986544      4566788888888754

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.76  E-value=2.7e-17  Score=170.58  Aligned_cols=341  Identities=20%  Similarity=0.228  Sum_probs=260.1

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC---CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ..+-++.-.+.+..++ .+++.+..++..|.++.|+++|.-+   +.+.+..|-.+|.|+...+++.+..-.+..+++.|
T Consensus       207 ~t~D~ee~ar~fLemS-ss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lL  285 (2195)
T KOG2122|consen  207 GTDDEEEMARTFLEMS-SSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLL  285 (2195)
T ss_pred             ccCCHHHHHHHHHHhc-cCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHH
Confidence            3344566677778888 6788888899999999999999754   46789999999999998666655544443333333


Q ss_pred             H---H-------Hhcc--C---C--hHHH-HHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc------------CC
Q 008940           86 I---L-------MLRS--E---D--SAIH-YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS------------CC  135 (548)
Q Consensus        86 v---~-------ll~~--~---~--~~v~-~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~------------~~  135 (548)
                      =   .       .+..  +   +  .+-+ ..|+.+|..++.+ ++.|..|.+.|++..+..|+.-            ..
T Consensus       286 eQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~  364 (2195)
T KOG2122|consen  286 EQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGEC  364 (2195)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHH
Confidence            2   1       1211  1   1  1223 3677778888655 8899999999999999888753            12


Q ss_pred             hHHHHHHHHHHHHhhcCCchhHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc--chhhhHhcCChHHHHH
Q 008940          136 SESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH--NQAGIAHNGGLVPLLK  212 (548)
Q Consensus       136 ~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~  212 (548)
                      ..+++++..+|.||+.++..++..+. ..|+++.++..|.+...++.+..+.+|.||+...+  .+..+.+.|-+..|..
T Consensus       365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~  444 (2195)
T KOG2122|consen  365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA  444 (2195)
T ss_pred             HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence            45899999999999999888887664 47999999999999888999999999999996654  3677778888888775


Q ss_pred             h-hcCCChhHHHHHHHHHHhcccC-CcchHHHHHh-cCcccccccch-h--------h---hhh----hHHHHHHHHHHH
Q 008940          213 L-LDSKNGSLQHNAAFALYGLADN-EDNVADFIRV-GGVQKLQDGEF-I--------V---QAT----KDCVAKTLKRLE  273 (548)
Q Consensus       213 l-l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~-g~i~~L~~~~~-~--------~---~~~----~~~~~~~~~~~~  273 (548)
                      . ++..........+.+||||+.+ .+++..|... |.+..|+.... .        +   ...    ...++.+-...+
T Consensus       445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ  524 (2195)
T KOG2122|consen  445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ  524 (2195)
T ss_pred             HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence            5 4555667778899999999875 6788888765 55555544211 0        0   000    111122334446


Q ss_pred             HhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhc-cCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          274 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL-CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       274 ~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      .+.+.+++..|++.|++.+-.+..++|.+|+|| +++++.++.+++.|+++.|.+|+++++..+.+-++.+|.||....
T Consensus       525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            677889999999999999999999999999999 567888999999999999999999999999999999999998765

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.75  E-value=1.2e-17  Score=152.04  Aligned_cols=158  Identities=20%  Similarity=0.379  Sum_probs=146.8

Q ss_pred             cchHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceec----CCCCHHHHHHHHHHHhcCcc
Q 008940          369 YLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI----PNIRWEVFELMMRFIYTGSV  444 (548)
Q Consensus       369 ~~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~Yt~~~  444 (548)
                      ++.+.++.++..+||.+.+-|...+.||.-|. .|+||++||+|.|+|+..+.|.+    |.++..++...+.-+|.+++
T Consensus        58 yiyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv  136 (488)
T KOG4682|consen   58 YIYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV  136 (488)
T ss_pred             HHHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence            45678889999999999999999999999887 89999999999999999986655    57999999999999999999


Q ss_pred             ccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchh
Q 008940          445 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ  524 (548)
Q Consensus       445 ~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~  524 (548)
                      +|..+.+..++.+|.+++++.|.+.|.+.+.+.+++.|++.+|+.+..|+...+++.|.+++..|+-.+....-+.+++.
T Consensus       137 eI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~  216 (488)
T KOG4682|consen  137 EIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISI  216 (488)
T ss_pred             eccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988777777755


Q ss_pred             hcH
Q 008940          525 RII  527 (548)
Q Consensus       525 ~~~  527 (548)
                      ++.
T Consensus       217 ~Lm  219 (488)
T KOG4682|consen  217 NLM  219 (488)
T ss_pred             HHH
Confidence            543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=1.1e-15  Score=136.61  Aligned_cols=304  Identities=18%  Similarity=0.240  Sum_probs=246.5

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc--CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ...+..+++.+|..+..+.|+    +.+..+...++.+|..  ++.++-...++.+..-|..++.+++.+++.++.+.+.
T Consensus       120 ~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~  195 (461)
T KOG4199|consen  120 NESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELIL  195 (461)
T ss_pred             chhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Confidence            346788999999999987777    5567888899998864  5688899999999999988999999999999999999


Q ss_pred             HHhc-cCChHHHHHHHHHHHHhhcCCh---------hHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCch
Q 008940           87 LMLR-SEDSAIHYEAVGVIGNLVHSSP---------NIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD  155 (548)
Q Consensus        87 ~ll~-~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~  155 (548)
                      ..|. .+..++.+...++++-+..+++         +..+.+...|++..|+..++- -+|.+...++.+|..++.. .+
T Consensus       196 ~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E  274 (461)
T KOG4199|consen  196 QVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DE  274 (461)
T ss_pred             HHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HH
Confidence            7776 4455688889999999976533         345778888899999998875 3588888999999999855 56


Q ss_pred             hHHHHHhcCChHHHHHhhCCC-CHH---HHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc--CCChhHHHHHHHHH
Q 008940          156 CKVHIVQRGAVRPLIEMLQSP-DVQ---LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD--SKNGSLQHNAAFAL  229 (548)
Q Consensus       156 ~~~~~~~~g~v~~L~~ll~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~L  229 (548)
                      ....+.+.|++..|+.++.+. +..   +...++..|..|+-.+..+..+++.|+.+.++.++.  +.+|.+...++.++
T Consensus       275 ~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i  354 (461)
T KOG4199|consen  275 ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAII  354 (461)
T ss_pred             HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHH
Confidence            677899999999999999884 333   457788999999999999999999999999888774  46788999999999


Q ss_pred             Hhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh--hhhhhhhhHHHHhhhc
Q 008940          230 YGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHL  306 (548)
Q Consensus       230 ~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~a~~aL~~l  306 (548)
                      +-|+- .+++...+++.|                                 .-...++.|+.  ....+|.+||+.+.|+
T Consensus       355 ~~l~LR~pdhsa~~ie~G---------------------------------~a~~avqAmkahP~~a~vQrnac~~IRNi  401 (461)
T KOG4199|consen  355 SILCLRSPDHSAKAIEAG---------------------------------AADLAVQAMKAHPVAAQVQRNACNMIRNI  401 (461)
T ss_pred             HHHHhcCcchHHHHHhcc---------------------------------hHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            99975 566766666655                                 44455666765  4578999999999999


Q ss_pred             cC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          307 CS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       307 ~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      +. +.++++.++ .+|++.|++.....++..+..+-.+|..|.-+.
T Consensus       402 v~rs~~~~~~~l-~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v  446 (461)
T KOG4199|consen  402 VVRSAENRTILL-ANGIEKLIRTAKANHETCEAAAKAALRDLGCDV  446 (461)
T ss_pred             HHhhhhccchHH-hccHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence            75 455665544 678999999999999999888888898886653

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=1.1e-14  Score=130.20  Aligned_cols=305  Identities=18%  Similarity=0.254  Sum_probs=238.6

Q ss_pred             HHHHHHHHHh---hhChhhHHHHHhcCCchHHHHhh---ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940           15 RAADAITNLA---HENSSIKTRVRMEGGIPPLVELL---EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus        15 ~a~~~L~~l~---~~~~~~~~~i~~~g~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      .....+-+++   +.+-..+..-...|..+.++.++   .+++..+..+++.+|..+..+.|+    +.+..++..++.+
T Consensus        78 E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~l  153 (461)
T KOG4199|consen   78 ETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKL  153 (461)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHH
Confidence            3344445554   22233344444556677666655   456788889999999999876554    4556688999999


Q ss_pred             hc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCc---------hh
Q 008940           89 LR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDS---------DC  156 (548)
Q Consensus        89 l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~---------~~  156 (548)
                      |.  .++.++-...+..+..-|...+.+|+.+++.++.+.+.+.+.... .++.+.+.|++..+..+++         ..
T Consensus       154 L~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~h  233 (461)
T KOG4199|consen  154 LALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGH  233 (461)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHH
Confidence            97  457788888889999988888899999999999999998876654 5688999999999975532         23


Q ss_pred             HHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-h---hHHHHHHHHHHh
Q 008940          157 KVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-G---SLQHNAAFALYG  231 (548)
Q Consensus       157 ~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~---~v~~~a~~~L~~  231 (548)
                      .+.+.+.|++..|.+.++. -+|.+....+.+|..|+...+.+..+.+.||+..|++++.+.+ .   ...+.++..|..
T Consensus       234 Ar~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLra  313 (461)
T KOG4199|consen  234 ARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRA  313 (461)
T ss_pred             HHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Confidence            4567778889999999986 3688999999999999999999999999999999999998754 2   345688999999


Q ss_pred             cccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHH--hhhhhhhhhHHHHhhhcc-C
Q 008940          232 LADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR--VAEKGVQRRVALALAHLC-S  308 (548)
Q Consensus       232 l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~~~~~a~~aL~~l~-~  308 (548)
                      |+.++.++..+++.|+.+.                                 ++.++.  +++|.+..+++.+++.++ +
T Consensus       314 lAG~DsvKs~IV~~gg~~~---------------------------------ii~l~~~h~~~p~Vi~~~~a~i~~l~LR  360 (461)
T KOG4199|consen  314 LAGSDSVKSTIVEKGGLDK---------------------------------IITLALRHSDDPLVIQEVMAIISILCLR  360 (461)
T ss_pred             HhCCCchHHHHHHhcChHH---------------------------------HHHHHHHcCCChHHHHHHHHHHHHHHhc
Confidence            9999999999988886554                                 444443  378999999999999997 5


Q ss_pred             CCccceeeecCCchHHHHHhhcC-C-CCccchhhHHHHHHHhhhcccccc
Q 008940          309 PDDQRTIFIDGGGLELLLGLLGS-T-NPKQQLDGAVALFKLANKATTLSS  356 (548)
Q Consensus       309 ~~~~~~~~~~~~~i~~L~~ll~~-~-~~~v~~~a~~~L~~l~~~~~~~~~  356 (548)
                      .|++...+++.|+-...++.++. + ...+|++||+.+.|++......+.
T Consensus       361 ~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~  410 (461)
T KOG4199|consen  361 SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT  410 (461)
T ss_pred             CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            67788889999999999998873 3 345699999999999987655443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.70  E-value=1.3e-16  Score=157.40  Aligned_cols=162  Identities=21%  Similarity=0.403  Sum_probs=140.8

Q ss_pred             CCCccEEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhc-Ccccc-----chHh
Q 008940          378 ATLSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDV-----TLDI  450 (548)
Q Consensus       378 ~~~~Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~-----~~~~  450 (548)
                      .+.-|+.+.+ ||+.++|||++|++|++||..||..-|.|++.-.+..-.+..+.+..+|+|+|+ .+..+     ..+.
T Consensus       708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF  787 (1267)
T KOG0783|consen  708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF  787 (1267)
T ss_pred             ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence            4445666666 578899999999999999999999999999876666666679999999999995 44432     3456


Q ss_pred             HHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHHH
Q 008940          451 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI  530 (548)
Q Consensus       451 ~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~  530 (548)
                      +.+++..||.|.+.+|+..|+..|.+.++..||-.+++||.+|++..|+..|++||..|+..+..-....+++-..+.++
T Consensus       788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l  867 (1267)
T KOG0783|consen  788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKL  867 (1267)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999988777777777788888


Q ss_pred             HHHHHhhcC
Q 008940          531 HNYFAKALT  539 (548)
Q Consensus       531 ~~~l~~~~~  539 (548)
                      -++.+++++
T Consensus       868 ~~~yrkm~~  876 (1267)
T KOG0783|consen  868 AQRYRKMLS  876 (1267)
T ss_pred             HHHHHHHhh
Confidence            888888876

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.69  E-value=1.5e-16  Score=122.81  Aligned_cols=90  Identities=37%  Similarity=0.692  Sum_probs=85.8

Q ss_pred             cEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHHHHHHHHh
Q 008940          382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQY  461 (548)
Q Consensus       382 Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~a~~~  461 (548)
                      |+++.++|+.|++||.+|+++|+||+.||.+++.++....+.+++.+++.|+.+++|+|+|++.++..++.+++.+|++|
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~   80 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL   80 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999998888878899999999999999999999999999999999999999999


Q ss_pred             ChHhHHHHHH
Q 008940          462 LLEGLKRLCE  471 (548)
Q Consensus       462 ~~~~l~~~c~  471 (548)
                      +++.+.+.|+
T Consensus        81 ~~~~l~~~c~   90 (90)
T smart00225       81 QIPGLVELCE   90 (90)
T ss_pred             CcHHHHhhhC
Confidence            9999999884

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.66  E-value=2.5e-14  Score=144.99  Aligned_cols=322  Identities=20%  Similarity=0.199  Sum_probs=249.8

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +.++.+++-+++.|.++.+++......+.+.++++.++.++.+++..+...|+.+|.+++. .+...+.+...+.+..|.
T Consensus        88 h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~  166 (503)
T PF10508_consen   88 HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLK  166 (503)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHH
Confidence            5678999999999999998777777888889999999999999999999999999999998 566677788888899999


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      .++..+++.+|..+..++.+++..+++....+...|+++.++..+.++|.-++.+++.+|..++. .+.....+.+.|++
T Consensus       167 ~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~  245 (503)
T PF10508_consen  167 SLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIF  245 (503)
T ss_pred             HHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHH
Confidence            99998899999999999999999999999999999999999999999888899999999999997 67888889999999


Q ss_pred             HHHHHhhCCC--CH---HH-HHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchH
Q 008940          167 RPLIEMLQSP--DV---QL-REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA  240 (548)
Q Consensus       167 ~~L~~ll~~~--~~---~v-~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  240 (548)
                      +.|..++.+.  +|   .+ .-......++++...+....-.-...+..+.+++.+.++..+..|..+++.++...+++.
T Consensus       246 ~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~  325 (503)
T PF10508_consen  246 DKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ  325 (503)
T ss_pred             HHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence            9999999763  33   11 223346677787753322211112334456677788899999999999999998887766


Q ss_pred             HH-HHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCcc----c--
Q 008940          241 DF-IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ----R--  313 (548)
Q Consensus       241 ~~-~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~----~--  313 (548)
                      .+ ...|.                            .-..++...-....++..++|..++.++.++...+..    +  
T Consensus       326 ~L~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~  377 (503)
T PF10508_consen  326 LLLQKQGP----------------------------AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL  377 (503)
T ss_pred             HHHhhcch----------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH
Confidence            66 22220                            0011334444445556778899999999998433221    0  


Q ss_pred             ----e--eeecCCchH-HHHHhhcCCCCccchhhHHHHHHHhhhcccccccc
Q 008940          314 ----T--IFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVD  358 (548)
Q Consensus       314 ----~--~~~~~~~i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~i~  358 (548)
                          .  .....+... .+..+++.+=+++|.++...|..++...|+...+.
T Consensus       378 ~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~  429 (503)
T PF10508_consen  378 SITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREIC  429 (503)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                1  112223334 67778888889999999999999999999876544

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.65  E-value=4.3e-14  Score=130.55  Aligned_cols=306  Identities=18%  Similarity=0.188  Sum_probs=228.9

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhc----CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRME----GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~----g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ..++.-+..++...+ .++..|..+.+.    +.++.|.+..++++.++-....++|+|+|..+.++|..+.+.|+-+.+
T Consensus        56 ~tv~~~qssC~A~~s-k~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv  134 (604)
T KOG4500|consen   56 DTVYLFQSSCLADRS-KNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV  134 (604)
T ss_pred             chhhhhhHHHHHHHh-hhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence            356666777888888 456666555544    556777777788889999999999999999999999999999998888


Q ss_pred             HHHhcc---C----ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC------------------------
Q 008940           86 ILMLRS---E----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC------------------------  134 (548)
Q Consensus        86 v~ll~~---~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------------------------  134 (548)
                      +++|+.   .    +.+....+...|.|-..++.+.+.+.++.|+++.|...+.-.                        
T Consensus       135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~  214 (604)
T KOG4500|consen  135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEM  214 (604)
T ss_pred             HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHh
Confidence            888862   1    346777888899999999999999999999999877665321                        


Q ss_pred             ----------------------ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CC-------HHHHHHH
Q 008940          135 ----------------------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PD-------VQLREMS  184 (548)
Q Consensus       135 ----------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~-------~~v~~~a  184 (548)
                                            +++..+.+...|...+ .++..+..+++.|.+..++++++. ++       -.....+
T Consensus       215 ~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~  293 (604)
T KOG4500|consen  215 LYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRI  293 (604)
T ss_pred             hhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhh
Confidence                                  1223333333444443 223444556777888877777764 21       1233444


Q ss_pred             HHHHHHhhcCCcchhhhHhcC-ChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhH
Q 008940          185 AFALGRLAQDMHNQAGIAHNG-GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD  263 (548)
Q Consensus       185 ~~~L~~l~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~  263 (548)
                      +....-+..+++.-..+...+ .+.-+...+.+.+......+..+|+|+++.++++..+++.|                 
T Consensus       294 ~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~-----------------  356 (604)
T KOG4500|consen  294 AELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKD-----------------  356 (604)
T ss_pred             hhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHH-----------------
Confidence            444455555555544455444 56678888999999999999999999999999988887665                 


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHh-----hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccch
Q 008940          264 CVAKTLKRLEEKIHGRVLNHLLYLMRV-----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL  338 (548)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  338 (548)
                                      ++..|+.++..     ++..+|.+++.+|.|++.+..++..+...|..+.++..++...|.++.
T Consensus       357 ----------------~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~f  420 (604)
T KOG4500|consen  357 ----------------FLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTF  420 (604)
T ss_pred             ----------------HHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchH
Confidence                            66677776654     567889999999999999999999999999999999999988899987


Q ss_pred             hhHHHHHHHhhh
Q 008940          339 DGAVALFKLANK  350 (548)
Q Consensus       339 ~a~~~L~~l~~~  350 (548)
                      .-...+..+...
T Consensus       421 kllgTlrM~~d~  432 (604)
T KOG4500|consen  421 KLLGTLRMIRDS  432 (604)
T ss_pred             HHHHHHHHHHhc
Confidence            777777666553

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.65  E-value=2.4e-15  Score=150.09  Aligned_cols=308  Identities=19%  Similarity=0.225  Sum_probs=228.0

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh--HHH
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKK  116 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~  116 (548)
                      -++..+.+|.+.++.+|..|...+..+|.++.+.+..+.+.|+++.|+.++.+.+.+++..|+++|.||..+...  .+-
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            467788999999999999999999999999999999999999999999999999999999999999999877655  788


Q ss_pred             HHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC--------------CCHHHH
Q 008940          117 EVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--------------PDVQLR  181 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~--------------~~~~v~  181 (548)
                      .+.+.++++.+++++.. .|.++++....+|+||++. +..+..++. ..+..|...+-.              .+..+.
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence            89999999999999986 7899999999999999866 444444433 344555444321              135677


Q ss_pred             HHHHHHHHHhhc-CCcchhhhHhc-CChHHHHHhhc------CCChhHHHHHHHHHHhcccCC--c----chHHHHHhcC
Q 008940          182 EMSAFALGRLAQ-DMHNQAGIAHN-GGLVPLLKLLD------SKNGSLQHNAAFALYGLADNE--D----NVADFIRVGG  247 (548)
Q Consensus       182 ~~a~~~L~~l~~-~~~~~~~~~~~-~~l~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~--~----~~~~~~~~g~  247 (548)
                      .++.+||.|++. ..+.++++.+. |.+..|+..++      +.+....++++.+|.||+..-  +    ........+.
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            899999999997 44567777665 56777887775      235667789999999998521  1    1111111111


Q ss_pred             cccccccchhhhhhhHHHHHHH-------------------HHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhcc
Q 008940          248 VQKLQDGEFIVQATKDCVAKTL-------------------KRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLC  307 (548)
Q Consensus       248 i~~L~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~  307 (548)
                      .+.--.    ......|...-.                   +-..-.+...++...+.+|.. .+..+.++++.+|.|++
T Consensus       472 ~~~~~~----~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt  547 (717)
T KOG1048|consen  472 LPGVGP----PAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT  547 (717)
T ss_pred             cccCCC----cccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence            111000    001112221111                   112223555678877777765 78899999999999996


Q ss_pred             CCC--c----cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          308 SPD--D----QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       308 ~~~--~----~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      .+.  .    .+..+.++.+++.|+.++..+++.|.+.++.+|.||+.+..
T Consensus       548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r  598 (717)
T KOG1048|consen  548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR  598 (717)
T ss_pred             ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch
Confidence            542  1    23455888999999999999999999999999999998643

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.63  E-value=8.8e-14  Score=141.06  Aligned_cols=304  Identities=17%  Similarity=0.206  Sum_probs=240.1

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML   89 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll   89 (548)
                      .+....++.+|..+.. .......  ..+..+.|...|.++++.||..++..|+++..++......+.+.++++.++.++
T Consensus        52 ~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L  128 (503)
T PF10508_consen   52 REQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL  128 (503)
T ss_pred             hHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH
Confidence            3445677777777774 2222222  457778899999999999999999999999987666677788899999999999


Q ss_pred             ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHH
Q 008940           90 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL  169 (548)
Q Consensus        90 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L  169 (548)
                      .+++..+...|+.+|.+++...+.. +.+...+.++.|..++..++..++..+..++.+++..+++....+.+.|+++.+
T Consensus       129 ~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~l  207 (503)
T PF10508_consen  129 RDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLL  207 (503)
T ss_pred             cCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHH
Confidence            9999999999999999999875554 667788889999999998888899999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhH-----H-HHHHHHHHhcccCCcchHHHH
Q 008940          170 IEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL-----Q-HNAAFALYGLADNEDNVADFI  243 (548)
Q Consensus       170 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v-----~-~~a~~~L~~l~~~~~~~~~~~  243 (548)
                      +..++++|.-++..++..|..|+..+.+...+.+.|+++.|..++.+...+-     . .......++++...+. ... 
T Consensus       208 l~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~-~v~-  285 (503)
T PF10508_consen  208 LKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ-EVL-  285 (503)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH-HHH-
Confidence            9999999999999999999999998888899999999999999997643221     1 1222344455442111 000 


Q ss_pred             HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceee-ecCC-c
Q 008940          244 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF-IDGG-G  321 (548)
Q Consensus       244 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~-~~~~-~  321 (548)
                                                     ..-..++..+..++.+.|+..+..|..+++.++...+++..+ ...+ .
T Consensus       286 -------------------------------~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~  334 (503)
T PF10508_consen  286 -------------------------------ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA  334 (503)
T ss_pred             -------------------------------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH
Confidence                                           011235667777888899999999999999999988888766 3332 2


Q ss_pred             ----hHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          322 ----LELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       322 ----i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                          +..+.....++..++|.++..++.++...
T Consensus       335 ~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~  367 (503)
T PF10508_consen  335 MKHVLKAIGDAIKSGSTELKLRALHALASILTS  367 (503)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence                44444555567778899999999999753

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.59  E-value=2.3e-14  Score=149.32  Aligned_cols=262  Identities=19%  Similarity=0.196  Sum_probs=216.7

Q ss_pred             HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC------------CHHHHHHHHHHHHHhhccCcchhhHhhh-cCC
Q 008940           15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT------------DTKVQRAAAGALRTLAFKNDENKNQIVE-CNA   81 (548)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~   81 (548)
                      .|+..|..++ -+++.|..+.+.|++..+.+|++-+            ...+|.+|..+|.||..++..|+..++. .|.
T Consensus       317 aA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf  395 (2195)
T KOG2122|consen  317 AALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF  395 (2195)
T ss_pred             HHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence            4555566666 4789999999999999999988521            2568999999999999998888888876 489


Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940           82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVH  159 (548)
Q Consensus        82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~  159 (548)
                      ++.+|..|.+..+++....+.+|+||+...+ ..+..+.+.|-+..|+.+. ....+...+..+.+||||+.++.+++..
T Consensus       396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~  475 (2195)
T KOG2122|consen  396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE  475 (2195)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence            9999999999888999999999999987654 4566777789999998875 4445567788899999999999899888


Q ss_pred             HHh-cCChHHHHHhhCCC----CHHHHHHHHHHHHHhhcC----CcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHH
Q 008940          160 IVQ-RGAVRPLIEMLQSP----DVQLREMSAFALGRLAQD----MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY  230 (548)
Q Consensus       160 ~~~-~g~v~~L~~ll~~~----~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  230 (548)
                      +.. .|++..|+.+|..+    ...+.+.+-++|.|++..    .+.+..+.+.+.+..|++.|++....+..++|++||
T Consensus       476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW  555 (2195)
T KOG2122|consen  476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW  555 (2195)
T ss_pred             hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence            766 79999999999754    446889999999998743    344667788899999999999999999999999999


Q ss_pred             hccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC
Q 008940          231 GLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP  309 (548)
Q Consensus       231 ~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~  309 (548)
                      ||+. +++.++.                                 +++.|.++.|..++++++..+-+.++.+|.|+...
T Consensus       556 NLSAR~p~DQq~---------------------------------LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  556 NLSARSPEDQQM---------------------------------LWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             hhhcCCHHHHHH---------------------------------HHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            9965 4444333                                 46677899999999999999999999999999765


Q ss_pred             C
Q 008940          310 D  310 (548)
Q Consensus       310 ~  310 (548)
                      .
T Consensus       603 R  603 (2195)
T KOG2122|consen  603 R  603 (2195)
T ss_pred             C
Confidence            4

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.57  E-value=2.1e-13  Score=126.06  Aligned_cols=341  Identities=17%  Similarity=0.166  Sum_probs=247.5

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc----C---CHHHHHHHHHHHHHhhccCcchhhHhhhcCC
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----T---DTKVQRAAAGALRTLAFKNDENKNQIVECNA   81 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~   81 (548)
                      +.++..+.+++|+++|+.+.++|..+.+.||-..+++.|+.    +   +.+....+...|.|..-++++.+..+.+.|+
T Consensus       100 d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gV  179 (604)
T KOG4500|consen  100 DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGV  179 (604)
T ss_pred             cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhccc
Confidence            45889999999999999999999999999998888888863    2   2466677788899988888889999999999


Q ss_pred             hHHHHHHhcc--C--------------------------------------------ChHHHHHHHHHHHHhhcCChhHH
Q 008940           82 LPTLILMLRS--E--------------------------------------------DSAIHYEAVGVIGNLVHSSPNIK  115 (548)
Q Consensus        82 i~~Lv~ll~~--~--------------------------------------------~~~v~~~a~~~L~~l~~~~~~~~  115 (548)
                      ++.|...+.-  .                                            ++++++....+|...+. ++..+
T Consensus       180 l~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vk  258 (604)
T KOG4500|consen  180 LNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVK  258 (604)
T ss_pred             HHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-Cccee
Confidence            9877654431  1                                            12344455555555543 34555


Q ss_pred             HHHHhcCChHHHHHhhhc-CC----hH---HHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHH
Q 008940          116 KEVLAAGALQPVIGLLSS-CC----SE---SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA  187 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~~-~~----~~---~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~  187 (548)
                      -.+.+.|.+..+..+++. ++    .+   ....++....-+..+++..........+++.+.+.++++|......+.-+
T Consensus       259 l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~La  338 (604)
T KOG4500|consen  259 LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLA  338 (604)
T ss_pred             eehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHH
Confidence            666777888888887765 11    11   22333333333434444433333333389999999999999999999999


Q ss_pred             HHHhhcCCcchhhhHhcCChHHHHHhhcC-----CChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccc-------
Q 008940          188 LGRLAQDMHNQAGIAHNGGLVPLLKLLDS-----KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE-------  255 (548)
Q Consensus       188 L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~-------  255 (548)
                      ++|+++.+..+..+++.+.+..|++++..     ++.+++..++.+|.|+.-...++..+...|+.+.++...       
T Consensus       339 igNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv  418 (604)
T KOG4500|consen  339 IGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPV  418 (604)
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcc
Confidence            99999999999999999999999998863     457788899999999999999999999999877654321       


Q ss_pred             -hhhhhhhHHHHHHHHHH-HHh-hhhhhhHHHHHHHHhhhhh-hhhhHHHHhhhccCCCc---cceeeecCCchHHHHHh
Q 008940          256 -FIVQATKDCVAKTLKRL-EEK-IHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGL  328 (548)
Q Consensus       256 -~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~L~~ll~~~~~~-~~~~a~~aL~~l~~~~~---~~~~~~~~~~i~~L~~l  328 (548)
                       |......++...+-+.+ .++ -+...+.+|+.+-+++|.. +-.+..+.+..+..+..   .-..+.+.||++.++.+
T Consensus       419 ~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm  498 (604)
T KOG4500|consen  419 TFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSM  498 (604)
T ss_pred             hHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHH
Confidence             11112223322222221 122 2345788999999887765 78888888888876543   33567778999999999


Q ss_pred             hcCCCCccchhhHHHHHHHhhh
Q 008940          329 LGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       329 l~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +...+-..+..|..+++-++..
T Consensus       499 ~t~~hi~mqnEalVal~~~~~~  520 (604)
T KOG4500|consen  499 FTKNHINMQNEALVALLSTESK  520 (604)
T ss_pred             HHHhhHHHhHHHHHHHHHHHHH
Confidence            9988888899999999888764

>PRK09687 putative lyase; Provisional

Probab=99.54  E-value=3.3e-13  Score=125.47  Aligned_cols=252  Identities=17%  Similarity=0.128  Sum_probs=137.3

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      ++.|.+.|.+++..+|..|+.+|..+..           ..+++.+..+++++++.+|..++++|+.+-.....      
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------   87 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------   87 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------
Confidence            4456666666666666666666665542           12445555566666666666666666666321110      


Q ss_pred             hcCChHHHHHh-hhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940          120 AAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  198 (548)
Q Consensus       120 ~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  198 (548)
                      ....++.|..+ ++++++.|+..++.+|++++......     ....++.+...+.++++.||..++.+|+.+..     
T Consensus        88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-----  157 (280)
T PRK09687         88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-----  157 (280)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence            11234455544 45555666666666666664322111     01133344455555566666666666654421     


Q ss_pred             hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhh
Q 008940          199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH  277 (548)
Q Consensus       199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (548)
                           ...++.|+.++.++++.++..|+.+|+.+... +.....+..     .|.      +........+...+....+
T Consensus       158 -----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~-----~L~------D~~~~VR~~A~~aLg~~~~  221 (280)
T PRK09687        158 -----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVA-----MLQ------DKNEEIRIEAIIGLALRKD  221 (280)
T ss_pred             -----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHH-----Hhc------CCChHHHHHHHHHHHccCC
Confidence                 12455566666666666666666666666221 111111110     010      1111222233333333444


Q ss_pred             hhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhc-CCCCccchhhHHHHHH
Q 008940          278 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFK  346 (548)
Q Consensus       278 ~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~  346 (548)
                      ..+++.|+..+.+++  ++..++.+|+++..          ..++|.|.+++. ++++.++..+.+++..
T Consensus       222 ~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        222 KRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            557888888888755  67788888887755          247899999996 7888888888887653

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.53  E-value=5.1e-13  Score=121.20  Aligned_cols=240  Identities=17%  Similarity=0.134  Sum_probs=183.6

Q ss_pred             HhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh
Q 008940           35 RMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN  113 (548)
Q Consensus        35 ~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~  113 (548)
                      .+.+-++.|+.+|+. .++.+++.++.++++.+. .+.++..+.+.|+++.+..++.++++.++..|+++|.|++.. .+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence            455677899999985 579999999999999986 699999999999999999999999999999999999999876 44


Q ss_pred             HHHHHHhcCChHHHHHhhhcC--ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008940          114 IKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  191 (548)
Q Consensus       114 ~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l  191 (548)
                      .+..+-.  .++.+++...+.  +.+++..+..+|.+++.. ......+.  +.++.++.++.+++..++..++++|.||
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            4444432  577777755443  578999999999999755 44444443  4799999999999999999999999999


Q ss_pred             hcCCcchhhhHhcCChHHHHHhhcCC-ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHH
Q 008940          192 AQDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK  270 (548)
Q Consensus       192 ~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~  270 (548)
                      +.++...+.+...+++..++.+++.. +.++...++....|+..+-.......        .+..|+.+..        -
T Consensus       162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~--------~~~~~~~~~L--------~  225 (254)
T PF04826_consen  162 SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVF--------VQDDFSEDSL--------F  225 (254)
T ss_pred             ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCccccee--------ccccCCchhH--------H
Confidence            99999888888889999999999876 57788899999999975422211100        0011111110        0


Q ss_pred             HHHHhhh-hhhhHHHHHHHHhhhhhhhhhH
Q 008940          271 RLEEKIH-GRVLNHLLYLMRVAEKGVQRRV  299 (548)
Q Consensus       271 ~~~~~~~-~~~~~~L~~ll~~~~~~~~~~a  299 (548)
                        ....+ ..+...|..+..++|++||..+
T Consensus       226 --~~~~e~~~~~~~l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  226 --SLFGESSQLAKKLQALANHPDPEVKEQV  253 (254)
T ss_pred             --HHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence              00111 2366778888888999998754

>PRK09687 putative lyase; Provisional

Probab=99.53  E-value=5.5e-13  Score=124.01  Aligned_cols=225  Identities=16%  Similarity=0.086  Sum_probs=154.5

Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940           81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  160 (548)
                      .++.|..+|.+++..+|..+++.|..+-.           ...++.+..++.++++.++..++++|+.+-.....     
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence            57889999999999999999999998832           23577888899999999999999999999532211     


Q ss_pred             HhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch
Q 008940          161 VQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV  239 (548)
Q Consensus       161 ~~~g~v~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  239 (548)
                       ....++.|..+ ++++++.|+..++.+|++++......    ....+..+...+.++++.|+..++.+|+.+... ...
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai  161 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAI  161 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHH
Confidence             22466778877 67789999999999999997543211    112455577778888999999999999887532 221


Q ss_pred             HHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHh--hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeee
Q 008940          240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK--IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI  317 (548)
Q Consensus       240 ~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~  317 (548)
                      ..+.     ..|.+      ........+...+..+  .+..+++.|+.++.+.++.+|..|+++|+.+-          
T Consensus       162 ~~L~-----~~L~d------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----------  220 (280)
T PRK09687        162 PLLI-----NLLKD------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK----------  220 (280)
T ss_pred             HHHH-----HHhcC------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC----------
Confidence            2111     11111      1111112222222222  23457777888888888888888888887642          


Q ss_pred             cCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          318 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       318 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      ...++|.|++.+.+++  ++..++.+|.++...
T Consensus       221 ~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~  251 (280)
T PRK09687        221 DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK  251 (280)
T ss_pred             ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence            2256788888887654  667777878777653

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=1e-12  Score=119.21  Aligned_cols=193  Identities=20%  Similarity=0.213  Sum_probs=158.8

Q ss_pred             hhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch
Q 008940           77 VECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD  155 (548)
Q Consensus        77 ~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  155 (548)
                      .+.+-++.|+.+|+ +.++.+++.+..++++.+.. +..++.+.+.|+++.+..++.++++.++..|+++|.|++.. .+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence            45567899999998 56899999999999998755 77889999999999999999999999999999999999754 55


Q ss_pred             hHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940          156 CKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA  233 (548)
Q Consensus       156 ~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~  233 (548)
                      ++..+-.  .++.+++...+  -+..++..++++|.||+...+.+..+.  +.++.++.+|.+++..++..++.+|.||+
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            5555432  56766665544  367899999999999998877776665  47889999999999999999999999999


Q ss_pred             cCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh-hhhhhhhHHHHhhhccC
Q 008940          234 DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCS  308 (548)
Q Consensus       234 ~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~a~~aL~~l~~  308 (548)
                      .++.....+...+                                 ++..++.++... +.++...++..+.|+..
T Consensus       163 ~np~~~~~Ll~~q---------------------------------~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  163 ENPDMTRELLSAQ---------------------------------VLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             cCHHHHHHHHhcc---------------------------------chhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            9998877665544                                 566677777774 67777888888888854

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.49  E-value=8e-12  Score=120.69  Aligned_cols=334  Identities=13%  Similarity=0.149  Sum_probs=237.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhc-----CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCCh
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRME-----GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL   82 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   82 (548)
                      ..+++.++.+..+..+...++.....+.+.     ....+++.+|+.+|.-+...|+..|..+...++.+.......-..
T Consensus        66 ~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~  145 (429)
T cd00256          66 DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYF  145 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHH
Confidence            446889999999999998887776666664     456788889999999999999999999987544332221111123


Q ss_pred             HHHHHHhccC-ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC--ChHHHHHHHHHHHHhhcCCchhHHH
Q 008940           83 PTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVH  159 (548)
Q Consensus        83 ~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~  159 (548)
                      +.+...+..+ +.+.+..++.+|..|... +..|..+.+.++++.|+.+++..  +.+....++.+++-++.. ++....
T Consensus       146 ~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~  223 (429)
T cd00256         146 NWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEV  223 (429)
T ss_pred             HHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHh
Confidence            3445555543 577888889999999765 77788888888999999999763  457899999999999755 445556


Q ss_pred             HHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc-------chhhhHhcCChHHHHHhhcC---CChhHHHHHHH-
Q 008940          160 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH-------NQAGIAHNGGLVPLLKLLDS---KNGSLQHNAAF-  227 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~-  227 (548)
                      ..+.+.++.++.+++. ..+.+...++.+|.|+.....       ....++..|.+ .+++.|..   .|+++....-. 
T Consensus       224 ~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l~~L~~rk~~DedL~edl~~L  302 (429)
T cd00256         224 LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTLQSLEQRKYDDEDLTDDLKFL  302 (429)
T ss_pred             hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHHHHHhcCCCCcHHHHHHHHHH
Confidence            6778999999999987 456788999999999997542       12344554544 45555543   24554433222 


Q ss_pred             ------HHHhcccCCcchHHHHHhcCcccccccchhhh-hhhHHHHHHHHHHHHhhhhhhhHHHHHHHH-hhhhhhhhhH
Q 008940          228 ------ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRV  299 (548)
Q Consensus       228 ------~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~a  299 (548)
                            .+..++.-++....+ ..|.+.      .++. +...-+.++..++. --+..++..|+.+|. +.|+.+..-|
T Consensus       303 ~e~L~~~~k~ltsfD~Y~~El-~sg~L~------WSp~H~se~FW~EN~~kf~-~~~~~llk~L~~iL~~s~d~~~laVA  374 (429)
T cd00256         303 TEELKNSVQDLSSFDEYKSEL-RSGRLH------WSPVHKSEKFWRENADRLN-EKNYELLKILIHLLETSVDPIILAVA  374 (429)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH-hcCCcc------CCCCCCCchHHHHHHHHHH-hcchHHHHHHHHHHhcCCCcceeehh
Confidence                  223333333333333 223221      1111 22344555666654 223568899999996 4788999999


Q ss_pred             HHHhhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          300 ALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       300 ~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      |.=++.+++. |.+|..+-+.|+-..+.+++.++|++||..|..++..|--+.|
T Consensus       375 c~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~w  428 (429)
T cd00256         375 CHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHNW  428 (429)
T ss_pred             hhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence            9999999975 6688888889999999999999999999999999998866544

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.46  E-value=2e-12  Score=105.62  Aligned_cols=119  Identities=28%  Similarity=0.409  Sum_probs=111.4

Q ss_pred             HhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940           75 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS  154 (548)
Q Consensus        75 ~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  154 (548)
                      .+.+.|+++.+++++.++++.++..++++|++++.+.+..+..+.+.|+++.+++++.+++++++..++++|++++...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            45678999999999999999999999999999999888888999999999999999999999999999999999998877


Q ss_pred             hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940          155 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       155 ~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  193 (548)
                      .....+.+.|+++.++.++.+++..+++.++++|++++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            778888899999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.46  E-value=1.8e-12  Score=105.92  Aligned_cols=118  Identities=36%  Similarity=0.499  Sum_probs=111.3

Q ss_pred             HHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCCh
Q 008940           33 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP  112 (548)
Q Consensus        33 ~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~  112 (548)
                      .+.+.|+++.++++++++++.++..++.+|.+++..+++....+.+.|+++.+++++.++++.++..++++|++++.+.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            35678999999999999999999999999999999778999999999999999999999999999999999999999887


Q ss_pred             hHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940          113 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA  150 (548)
Q Consensus       113 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  150 (548)
                      ..+..+.+.|+++.+++++.+.+.++++.++++|.+++
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            88888899999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.42  E-value=3.6e-11  Score=131.08  Aligned_cols=178  Identities=16%  Similarity=0.076  Sum_probs=104.6

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcC
Q 008940          126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG  205 (548)
Q Consensus       126 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  205 (548)
                      .++..|.++++.++..|+.+|..+-              ..+.|..++.++++.+|..++.+|+.+.....        .
T Consensus       718 ~l~~~L~D~d~~VR~~Av~aL~~~~--------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~  775 (897)
T PRK13800        718 LFAAALGDPDHRVRIEAVRALVSVD--------------DVESVAGAATDENREVRIAVAKGLATLGAGGA--------P  775 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhccc--------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------h
Confidence            4455566666666666666655541              12345566667777777777777776643211        2


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHH
Q 008940          206 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLL  285 (548)
Q Consensus       206 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  285 (548)
                      .++.|..+++++++.++..|+.+|.++...+.....+..     .|.+      ........+...+..+.....++.|+
T Consensus       776 ~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~-----aL~d------~d~~VR~~Aa~aL~~l~~~~a~~~L~  844 (897)
T PRK13800        776 AGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATA-----ALRA------SAWQVRQGAARALAGAAADVAVPALV  844 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHH-----HhcC------CChHHHHHHHHHHHhccccchHHHHH
Confidence            256677777777778888888888777544322111111     1111      11122233444455555556777777


Q ss_pred             HHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940          286 YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF  345 (548)
Q Consensus       286 ~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  345 (548)
                      .+|.++++.||..|+++|+.+..         .....+.|...+++.++.||..|..+|.
T Consensus       845 ~~L~D~~~~VR~~A~~aL~~~~~---------~~~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        845 EALTDPHLDVRKAAVLALTRWPG---------DPAARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHhccCC---------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            77777777788888887776511         1234566777777777777777777664

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=1.1e-10  Score=109.74  Aligned_cols=339  Identities=16%  Similarity=0.185  Sum_probs=233.4

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      +.-..+.|...|.+++ .+-.....+++.+++..|++.|..++.++.......|..++. -.+|+..+.+.|+++.|+++
T Consensus       276 QeqLLrva~ylLlNlA-ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~kl  353 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLA-EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKL  353 (791)
T ss_pred             HHHHHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHh
Confidence            3455677888899999 566666778888999999999999999999999999999998 58999999999999999999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                      ....+++++...+..+.|++.+ ...+..++..|.+|.+..++.+....  ..|...+..++.+ ...+..+....+++.
T Consensus       354 fp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~d-D~~K~MfayTdci~~  429 (791)
T KOG1222|consen  354 FPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCD-DDAKAMFAYTDCIKL  429 (791)
T ss_pred             cCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccC-cHHHHHHHHHHHHHH
Confidence            9999999999999999999866 67789999999999999999875532  3345566666543 566666777788888


Q ss_pred             HHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHH-------------------------------------H
Q 008940          169 LIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-------------------------------------L  210 (548)
Q Consensus       169 L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~-------------------------------------L  210 (548)
                      ++..+-+ .+.++-.......-|+|.+..+...+.+..++..                                     |
T Consensus       430 lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdL  509 (791)
T KOG1222|consen  430 LMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDL  509 (791)
T ss_pred             HHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            8877654 3334443333344566654433322222222222                                     2


Q ss_pred             HHhhcCC-ChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccc--------cchhhhhhhHHHH--HHHHHHHHhhhh
Q 008940          211 LKLLDSK-NGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQD--------GEFIVQATKDCVA--KTLKRLEEKIHG  278 (548)
Q Consensus       211 ~~ll~~~-~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~  278 (548)
                      ...+... +...-..++++++||.- +-++...+.+...+|-+.+        .....+..-.|..  -..........+
T Consensus       510 a~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a  589 (791)
T KOG1222|consen  510 AGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA  589 (791)
T ss_pred             HHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence            2222222 23344456666666654 3344444444455553221        1111111112211  122333445677


Q ss_pred             hhhHHHHHHHHh--hhhhhhhhHHHHhhhccCCCccceeeecC-CchHHHHHhhcCCCCccchhhHHHHHHHhhhccc
Q 008940          279 RVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANKATT  353 (548)
Q Consensus       279 ~~~~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  353 (548)
                      ++++.++.+|+.  .+.++..+...+...+......|..+.+. ..-..|+.|+++.+.++|+.+-.+|--++.+...
T Consensus       590 ~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~E  667 (791)
T KOG1222|consen  590 KLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKE  667 (791)
T ss_pred             ccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence            899999999998  56778888888888888776666655554 4446789999999999999998888888876643

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.28  E-value=4.9e-10  Score=122.25  Aligned_cols=244  Identities=18%  Similarity=0.115  Sum_probs=186.6

Q ss_pred             cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940           37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      .+.++.|++.|+++++.+|..|+..|+.+..           .+.++.|+..|+++++.+|..|+.+|..+....+    
T Consensus       620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence            3466789999999999999999999998763           3468899999999999999999999988843211    


Q ss_pred             HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940          117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  196 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  196 (548)
                            ..+.+...|.++++.++..++.+|..+...            -...++..|.++++.+|..|+.+|..+-    
T Consensus       685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~----  742 (897)
T PRK13800        685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPDHRVRIEAVRALVSVD----  742 (897)
T ss_pred             ------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCCHHHHHHHHHHHhccc----
Confidence                  235777888889999999999999887421            2345778899999999999999999762    


Q ss_pred             chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc-hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHh
Q 008940          197 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK  275 (548)
Q Consensus       197 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  275 (548)
                               ..+.|..++.++++.++..++.+|..+...... ...+..      +.+     +........+...+...
T Consensus       743 ---------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~------ll~-----D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        743 ---------DVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRA------LTG-----DPDPLVRAAALAALAEL  802 (897)
T ss_pred             ---------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHH------Hhc-----CCCHHHHHHHHHHHHhc
Confidence                     234577889999999999999999999764321 122211      110     11223334455555555


Q ss_pred             hhhh-hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHH
Q 008940          276 IHGR-VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL  347 (548)
Q Consensus       276 ~~~~-~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  347 (548)
                      .... ....++..+.+.++.+|..|+.+|+.+.          ....++.|..+|.+++..||..|+.+|..+
T Consensus       803 g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        803 GCPPDDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             CCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            5443 4577889999999999999999998763          234579999999999999999999999987

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=8.6e-10  Score=101.54  Aligned_cols=191  Identities=24%  Similarity=0.286  Sum_probs=165.5

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      +...++-++.|+..|..++ ++-++...++..|+..+++..+++++..+|..|+++|+..+..||..++.+.+.|+.+.|
T Consensus        93 ~s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            4455688999999999999 678888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc--CChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940           86 ILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQ  162 (548)
Q Consensus        86 v~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  162 (548)
                      +..+.+ ++.+++..|+.+++.+...++.....+...++...|..++++  .+...++.++..+..+..........+..
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            999984 466788999999999999999888999998899999999998  45778899999999999877766665555


Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940          163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                      .+....+..+....+.++.+.+..++..+......
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~  286 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLSELST  286 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence            66767777777777888999888888777654433

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.26  E-value=1.4e-09  Score=101.40  Aligned_cols=342  Identities=14%  Similarity=0.130  Sum_probs=235.8

Q ss_pred             hhHHHHHHHHHHHHHhhh-ChhhHHHHHhcC---CchHHHHhhccCC-HHHHHHHHHHHHHhhccCcchhhHhhh-----
Q 008940            9 VNSVIRRAADAITNLAHE-NSSIKTRVRMEG---GIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVE-----   78 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g---~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~-----   78 (548)
                      +..+.+.-++.+.++... .+..+..+....   .+..++.++++.+ ++.....+..+..+...+......+..     
T Consensus        32 s~~ise~d~~~i~~~~~~~~~~~r~~~l~~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~  111 (442)
T KOG2759|consen   32 SEMISEEDYQFIRRLEKAPLSKERAQVLSANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKL  111 (442)
T ss_pred             HHHHhHhhHHHHHHHhcccchhhhhHHhhcccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhh
Confidence            345555666666666531 122233333333   3566777777644 667778888888777644333333222     


Q ss_pred             -cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhc-CChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCch
Q 008940           79 -CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS-CCSESQREAALLLGQFAATDSD  155 (548)
Q Consensus        79 -~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~  155 (548)
                       .-.-...+.+|...+.-+...+.+++..++...... -...+. -....+-..+++ .+++....++++|..+... ++
T Consensus       112 k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~e  189 (442)
T KOG2759|consen  112 KRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DE  189 (442)
T ss_pred             hccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cc
Confidence             223667889999999999999999999997653321 111000 012344455555 5677888899999999866 77


Q ss_pred             hHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC-ChhHHHHHHHHHHhc
Q 008940          156 CKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGL  232 (548)
Q Consensus       156 ~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l  232 (548)
                      .|..++...++..++..+.+  .+-+++...+.|+|-|+.++.....+...+.++.|..++++. ...|.+-++.++.|+
T Consensus       190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl  269 (442)
T KOG2759|consen  190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL  269 (442)
T ss_pred             hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888889999998843  467899999999999999998887787778899999999875 578889999999999


Q ss_pred             ccCC-------cchHHHHHhcCcccccc---cchhhh-----------hhhHHHH-------------------------
Q 008940          233 ADNE-------DNVADFIRVGGVQKLQD---GEFIVQ-----------ATKDCVA-------------------------  266 (548)
Q Consensus       233 ~~~~-------~~~~~~~~~g~i~~L~~---~~~~~~-----------~~~~~~~-------------------------  266 (548)
                      ....       +....++..++.+.+-.   ..++..           .......                         
T Consensus       270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~  349 (442)
T KOG2759|consen  270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKS  349 (442)
T ss_pred             hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence            8654       34455666666554421   000000           0000000                         


Q ss_pred             --HHHHHHHHhhh--hhhhHHHHHHHHh-hhhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhh
Q 008940          267 --KTLKRLEEKIH--GRVLNHLLYLMRV-AEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDG  340 (548)
Q Consensus       267 --~~~~~~~~~~~--~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  340 (548)
                        .=-++.....+  -.++..|+.+|+. .||.+..-||.-++.+.+ .|+++..+.+.||-+.+.+|+.++|++||..|
T Consensus       350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~A  429 (442)
T KOG2759|consen  350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHA  429 (442)
T ss_pred             cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHH
Confidence              00022222222  2389999999998 568889999999999987 47899999999999999999999999999999


Q ss_pred             HHHHHHHhhhcc
Q 008940          341 AVALFKLANKAT  352 (548)
Q Consensus       341 ~~~L~~l~~~~~  352 (548)
                      ..++..|..+.|
T Consensus       430 LlavQ~lm~~~w  441 (442)
T KOG2759|consen  430 LLAVQKLMVHNW  441 (442)
T ss_pred             HHHHHHHHhhcc
Confidence            999998876543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.2e-10  Score=113.73  Aligned_cols=270  Identities=17%  Similarity=0.106  Sum_probs=202.1

Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh----cCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch
Q 008940           80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA----AGALQPVIGLLSSCCSESQREAALLLGQFAATDSD  155 (548)
Q Consensus        80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  155 (548)
                      .+++.|..+|.+++...++-|..+|..++.++.+.-+.-..    .-.+|.++++.+++++.+|..|+.++-.+.-..+.
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q  207 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ  207 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence            46788899999999999999999999999887665333221    13589999999999999999999998887644322


Q ss_pred             hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940          156 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       156 ~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~  235 (548)
                      ... ..-...++.+..+..+++++||+..|.++..|......+..-.-.+.++.++...++.+.+|...||.....++..
T Consensus       208 al~-~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq  286 (885)
T KOG2023|consen  208 ALY-VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ  286 (885)
T ss_pred             HHH-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence            211 1123577788888888999999999999999987766553333335566677777788888999999999999887


Q ss_pred             CcchHHHHHh--cCccccccc---------------c--------------------------------h----------
Q 008940          236 EDNVADFIRV--GGVQKLQDG---------------E--------------------------------F----------  256 (548)
Q Consensus       236 ~~~~~~~~~~--g~i~~L~~~---------------~--------------------------------~----------  256 (548)
                      +-.+..+...  .++|.|+.+               +                                +          
T Consensus       287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~  366 (885)
T KOG2023|consen  287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF  366 (885)
T ss_pred             cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence            7555544322  334433220               0                                0          


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh----hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCC
Q 008940          257 IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST  332 (548)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~  332 (548)
                      ...-..+|.+.+++.+..+....+++.++.+++.    .+..+|+++..+|+.++.+-..-..-.-...+|.|+++|.++
T Consensus       367 ~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DK  446 (885)
T KOG2023|consen  367 SDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDK  446 (885)
T ss_pred             ccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccC
Confidence            0011347888999999999999999999988876    678899999999999988754332222224689999999999


Q ss_pred             CCccchhhHHHHHHHhhh
Q 008940          333 NPKQQLDGAVALFKLANK  350 (548)
Q Consensus       333 ~~~v~~~a~~~L~~l~~~  350 (548)
                      .+-||.-.||+|.+.+.-
T Consensus       447 kplVRsITCWTLsRys~w  464 (885)
T KOG2023|consen  447 KPLVRSITCWTLSRYSKW  464 (885)
T ss_pred             ccceeeeeeeeHhhhhhh
Confidence            999999999999998764

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=2.8e-09  Score=98.22  Aligned_cols=185  Identities=23%  Similarity=0.273  Sum_probs=158.4

Q ss_pred             cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHH
Q 008940           49 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  128 (548)
Q Consensus        49 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  128 (548)
                      +.+.+-++.|+.-|..++. +-+|...+...|++..++..+++.+.++|+.|+++++..+.++|..++.+++.|+++.|+
T Consensus        94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            3457889999999999997 799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCcc-hhhhHhc
Q 008940          129 GLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHN-QAGIAHN  204 (548)
Q Consensus       129 ~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~  204 (548)
                      ..+.+++ ..++.+|..+++.+.+.++.....+...++...|.+.+++  .+..++..++..+..+...... +..+...
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~  252 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL  252 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence            9998765 4577999999999999999999999999999999999998  5677888999999999966654 3333344


Q ss_pred             CChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940          205 GGLVPLLKLLDSKNGSLQHNAAFALYGLAD  234 (548)
Q Consensus       205 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  234 (548)
                      +....+..+....+.++.+.+..++..+..
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            444556677777778888888877766654

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.15  E-value=1.4e-09  Score=102.12  Aligned_cols=275  Identities=20%  Similarity=0.253  Sum_probs=210.5

Q ss_pred             hHHHHHhcCCchHHHHhhccCC--HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHH
Q 008940           30 IKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGN  106 (548)
Q Consensus        30 ~~~~i~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~  106 (548)
                      .+..+...|++..|++++..++  ..+|..|.+.|..+..  .+|++.+...| +..++.+-+ ....+.+..++.+|.+
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~  248 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH  248 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence            3455777899999999999988  4569999999999985  88999998886 666666665 3467889999999999


Q ss_pred             hhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcC-CchhHHHHHhcCChHHHHHhhCCCCHHHHHHHH
Q 008940          107 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA  185 (548)
Q Consensus       107 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~  185 (548)
                      +..++++....++..|++..++--....++.+.+.++.+|+|.+-+ ....+..+++...-++|..+..+.|.-++.+||
T Consensus       249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            9999999899999999999999888888999999999999998854 346667888889999999999999989999999


Q ss_pred             HHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHH
Q 008940          186 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCV  265 (548)
Q Consensus       186 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~  265 (548)
                      -+.+.++.+.+....+...|.+..+-.++.+-+|.-.          +++.   ....+                     
T Consensus       329 lAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~---hd~aQ---------------------  374 (832)
T KOG3678|consen  329 LAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDA---HDYAQ---------------------  374 (832)
T ss_pred             HHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhh---hhhhc---------------------
Confidence            9999999888877778888877666666655554321          1110   00000                     


Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--Cccc-eeeecCCchHHHHHhhcCCCCccchhhHH
Q 008940          266 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQR-TIFIDGGGLELLLGLLGSTNPKQQLDGAV  342 (548)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  342 (548)
                               -...+-+++|+.+|++.--+.|..++.-++.=+.-  ..++ +.+-+.|+|..|.++.++++..-...|..
T Consensus       375 ---------G~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAse  445 (832)
T KOG3678|consen  375 ---------GRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASE  445 (832)
T ss_pred             ---------cCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence                     01123577888999877666666666555544332  2233 57788899999999999877666677778


Q ss_pred             HHHHHhhh
Q 008940          343 ALFKLANK  350 (548)
Q Consensus       343 ~L~~l~~~  350 (548)
                      +|.-+.+.
T Consensus       446 ALtviGEE  453 (832)
T KOG3678|consen  446 ALTVIGEE  453 (832)
T ss_pred             HHHHhccc
Confidence            88777664

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=7.9e-10  Score=104.16  Aligned_cols=302  Identities=15%  Similarity=0.124  Sum_probs=218.8

Q ss_pred             HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh
Q 008940           52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL  131 (548)
Q Consensus        52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll  131 (548)
                      ..+...|+..|.|++. +-..-..+...+++..|++.|...+.++...+...|-.|+.. .+++..+.+.|.+..|++++
T Consensus       277 eqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klf  354 (791)
T KOG1222|consen  277 EQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLF  354 (791)
T ss_pred             HHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhc
Confidence            4556778889999997 566667788889999999999988999999999999999765 66688999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHH
Q 008940          132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL  211 (548)
Q Consensus       132 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~  211 (548)
                      ...+++++......+-|++. +...+..++..|.+|.+..++.++.  -...|...+..++.++..+..+....+++.+.
T Consensus       355 p~~h~dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lm  431 (791)
T KOG1222|consen  355 PIQHPDLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLM  431 (791)
T ss_pred             CCCCHHHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999964 5788999999999999999998863  45667888999999998898898888999888


Q ss_pred             HhhcC-CChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhh--------------------HHH-----
Q 008940          212 KLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK--------------------DCV-----  265 (548)
Q Consensus       212 ~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~--------------------~~~-----  265 (548)
                      ..+-+ .+.++-.......-|+|.+..+.+.+++..++..|.+..+......                    +++     
T Consensus       432 k~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~  511 (791)
T KOG1222|consen  432 KDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAG  511 (791)
T ss_pred             HHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            66554 3455555555556688888888777777666665544222111000                    000     


Q ss_pred             -----------HHHHHHHH-----------HhhhhhhhHHHHHHHHh--hhhhhhhhHHHHhhhccCCCccceeeecCCc
Q 008940          266 -----------AKTLKRLE-----------EKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGG  321 (548)
Q Consensus       266 -----------~~~~~~~~-----------~~~~~~~~~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~  321 (548)
                                 .+++..+.           .+.+...+|-+-..|..  ...+.+....-+++.++....+...+...+.
T Consensus       512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~  591 (791)
T KOG1222|consen  512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKL  591 (791)
T ss_pred             HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcccc
Confidence                       00111110           01111223333333322  2345666777788888888888888888999


Q ss_pred             hHHHHHhhcC--CCCccchhhHHHHHHHhhhcccccccc
Q 008940          322 LELLLGLLGS--TNPKQQLDGAVALFKLANKATTLSSVD  358 (548)
Q Consensus       322 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~i~  358 (548)
                      ++.|++||+.  .+.+.......+...+..+..++..+.
T Consensus       592 i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~mi  630 (791)
T KOG1222|consen  592 IDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMI  630 (791)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999985  445556677777777777755554433

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.10  E-value=6.9e-09  Score=108.16  Aligned_cols=310  Identities=19%  Similarity=0.142  Sum_probs=195.6

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML   89 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll   89 (548)
                      +.-+..++.-|..+.....+..      .+.+.+++++.+.+...+.-+.-++..+...+++....     ++..+.+-+
T Consensus        20 ~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl   88 (526)
T PF01602_consen   20 ISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDL   88 (526)
T ss_dssp             HHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhh
Confidence            3445555555555543333322      56778999999999999999999999999765552222     466777888


Q ss_pred             ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHH
Q 008940           90 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL  169 (548)
Q Consensus        90 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L  169 (548)
                      .++++.++..|+++++++.  .++..+.     .++.+.+++.++++.+|+.|+.++..+...+++.   +... .++.+
T Consensus        89 ~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l  157 (526)
T PF01602_consen   89 NSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKL  157 (526)
T ss_dssp             CSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHH
T ss_pred             cCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHH
Confidence            8999999999999999996  3554333     5778999999999999999999999998665553   2223 68999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcc
Q 008940          170 IEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ  249 (548)
Q Consensus       170 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~  249 (548)
                      ..++.++++.++..|+.++..+ ...+....-.-...+..|.+++...++-.+..++..+..++........-  ...++
T Consensus       158 ~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~  234 (526)
T PF01602_consen  158 KQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIE  234 (526)
T ss_dssp             HHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHH
T ss_pred             hhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHH
Confidence            9999999999999999999999 22111100111123444555667788999999999999998754432200  11111


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHh-----hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHH
Q 008940          250 KLQDGEFIVQATKDCVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL  324 (548)
Q Consensus       250 ~L~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~  324 (548)
                      .+......  ......-.+...+..+     .-..+++.|..++.++++.+|..++.+|..++...  . ..+. ..-..
T Consensus       235 ~l~~~l~s--~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~-~~v~-~~~~~  308 (526)
T PF01602_consen  235 PLLNLLQS--SSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--P-PAVF-NQSLI  308 (526)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--H-HHHG-THHHH
T ss_pred             HHHHHhhc--cccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--c-hhhh-hhhhh
Confidence            11110000  0001111111111111     12346777777777777777777777777776654  1 1122 22233


Q ss_pred             HHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          325 LLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       325 L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +..+..++++.+|..+...|..++..
T Consensus       309 ~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  309 LFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             HHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             hheecCCCChhHHHHHHHHHhhcccc
Confidence            33334466777777777777777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=2.7e-07  Score=96.86  Aligned_cols=408  Identities=18%  Similarity=0.109  Sum_probs=237.6

Q ss_pred             HHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC
Q 008940           13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE   92 (548)
Q Consensus        13 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~   92 (548)
                      -.-|.++|-.++.+=+.. .  +-.-..+.+-.+++++++.-|..|+.+|..++.|..+.-...... +++..+..|+++
T Consensus       326 ~~~A~~~lDrlA~~L~g~-~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~Dp  401 (1075)
T KOG2171|consen  326 YRAAEQALDRLALHLGGK-Q--VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDP  401 (1075)
T ss_pred             HHHHHHHHHHHHhcCChh-h--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCC
Confidence            345556666666321111 0  112245566778899999999999999999999877766654443 788889999999


Q ss_pred             ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChH-HHH
Q 008940           93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVR-PLI  170 (548)
Q Consensus        93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~-~L~  170 (548)
                      ++.||..|+.+++.++.+-...-+.......++.|+..+.+.. +.+...|+.++.|+....++....-+-.+++. .+.
T Consensus       402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~  481 (1075)
T KOG2171|consen  402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL  481 (1075)
T ss_pred             CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999876554455566678889999888754 68999999999999877665544444456666 444


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-h---hHHHHHHHHHHhccc--CC----cchH
Q 008940          171 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-G---SLQHNAAFALYGLAD--NE----DNVA  240 (548)
Q Consensus       171 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~---~v~~~a~~~L~~l~~--~~----~~~~  240 (548)
                      .+++++.+.+++.+..+|+..+...+..-.-.-...++.|...|.+.+ .   .++.....+++-++.  ++    +...
T Consensus       482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~  561 (1075)
T KOG2171|consen  482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE  561 (1075)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence            456678889999999999999976554322112234566667776654 2   233343344443321  21    1222


Q ss_pred             HHHHhcCcccccccchhhhhh----hHHHHHHHHHHHHhhhhh-------hhHHHHHHHHhh-h----------------
Q 008940          241 DFIRVGGVQKLQDGEFIVQAT----KDCVAKTLKRLEEKIHGR-------VLNHLLYLMRVA-E----------------  292 (548)
Q Consensus       241 ~~~~~g~i~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------~~~~L~~ll~~~-~----------------  292 (548)
                      .+++..     .....+....    ..+....-.++.++....       ++++++.-.+-. +                
T Consensus       562 eliqll-----~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~  636 (1075)
T KOG2171|consen  562 ELIQLL-----LELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLD  636 (1075)
T ss_pred             HHHHHH-----HhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccc
Confidence            222221     1111111111    122222223333332222       222222211110 0                


Q ss_pred             -------------------hhhhhhHHHHhhhccCCCccceeeecCCchH-HHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          293 -------------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       293 -------------------~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                                         -+-+..|+.+|+.++..........-.+.++ .+..+.-..+..||..|+.++.++.....
T Consensus       637 ~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~  716 (1075)
T KOG2171|consen  637 GWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCAL  716 (1075)
T ss_pred             cchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence                               0225667778877776543222112223444 23334446678899999999999887522


Q ss_pred             ccccccCCCCCCCccccchHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHH
Q 008940          353 TLSSVDAAPPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVF  432 (548)
Q Consensus       353 ~~~~i~~~~~~~~~~i~~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~  432 (548)
                      ...                                .+...     -+..-+.+|..+..+...+         +..+++.
T Consensus       717 ~A~--------------------------------~~~p~-----~l~~l~~~~~~~l~~~l~~---------E~e~~vl  750 (1075)
T KOG2171|consen  717 KAC--------------------------------QGGPE-----YLKQLWEAIRPALIKALEE---------EPETEVL  750 (1075)
T ss_pred             HHh--------------------------------ccChH-----HHHHHHHHHHHHHHHHhhc---------CCcHHHH
Confidence            111                                11111     1222333333333222111         2344444


Q ss_pred             HHHHHHHh-----cCccccchHhHHHHHHHHHHhChHhHHHHHHHHHH
Q 008940          433 ELMMRFIY-----TGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIA  475 (548)
Q Consensus       433 ~~~l~~~Y-----t~~~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~  475 (548)
                      ..+++-++     .|...+.++....+...-........++.+...=.
T Consensus       751 ~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~  798 (1075)
T KOG2171|consen  751 SEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEE  798 (1075)
T ss_pred             HHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            45555444     36677888888888888888888888877755443

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.05  E-value=1.5e-08  Score=99.64  Aligned_cols=343  Identities=16%  Similarity=0.165  Sum_probs=238.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC--HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ..|+...+|..-..++.-++++.+..+++.|.++.|..+++..+  .+.+...+.++..+..+.......+.+.+.++.|
T Consensus        21 ~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~L  100 (678)
T KOG1293|consen   21 LDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKL  100 (678)
T ss_pred             CCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHH
Confidence            44666678888888888788888888999999999999997654  6677777778888887788888999999999999


Q ss_pred             HHHhccCC-hHHHHHHHHHHHHhhcCChhHHHH--HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940           86 ILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKE--VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ  162 (548)
Q Consensus        86 v~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~--~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  162 (548)
                      +.++.+.| ..++...+++++++...++..-..  ......++.+..++..+.......-+.....++ +.+..+....+
T Consensus       101 l~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~~~hq~Il~N  179 (678)
T KOG1293|consen  101 LQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-STKDHQLILCN  179 (678)
T ss_pred             HHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-ccchhhheecc
Confidence            99999888 889999999999998765433222  222345666666665344445555555555555 44677778888


Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHH---HhhcCCcch-----hhhHhcCChH--HHHHhhcCCChhHHHHHHHHHHhc
Q 008940          163 RGAVRPLIEMLQSPDVQLREMSAFALG---RLAQDMHNQ-----AGIAHNGGLV--PLLKLLDSKNGSLQHNAAFALYGL  232 (548)
Q Consensus       163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~---~l~~~~~~~-----~~~~~~~~l~--~L~~ll~~~~~~v~~~a~~~L~~l  232 (548)
                      .|+.+.+.-++...+..+|..|..+++   ++..+++..     ..+.+.|..+  .+.+++++++...+..++.+|.++
T Consensus       180 a~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~  259 (678)
T KOG1293|consen  180 AGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPY  259 (678)
T ss_pred             ccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHH
Confidence            999999888888878889999999999   666555432     2234445554  466788888877777778777777


Q ss_pred             ccCC---cc---hHHHHHhc----------------Ccccccc--------cch---------h------hhhhhHHHH-
Q 008940          233 ADNE---DN---VADFIRVG----------------GVQKLQD--------GEF---------I------VQATKDCVA-  266 (548)
Q Consensus       233 ~~~~---~~---~~~~~~~g----------------~i~~L~~--------~~~---------~------~~~~~~~~~-  266 (548)
                      .+..   +.   -..+.+.|                ++..+-.        ..+         .      ......|.. 
T Consensus       260 ~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~s  339 (678)
T KOG1293|consen  260 LRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICAS  339 (678)
T ss_pred             HhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHH
Confidence            4322   00   00001111                1111000        000         0      000000000 


Q ss_pred             -----------------------------------------------------------HHHHHHHHh--------hhhh
Q 008940          267 -----------------------------------------------------------KTLKRLEEK--------IHGR  279 (548)
Q Consensus       267 -----------------------------------------------------------~~~~~~~~~--------~~~~  279 (548)
                                                                                 .+.......        -...
T Consensus       340 l~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~d  419 (678)
T KOG1293|consen  340 LAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRND  419 (678)
T ss_pred             HhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccch
Confidence                                                                       000001111        1224


Q ss_pred             hhHHHHHHHHhhhhhhhhhHHHHhhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          280 VLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       280 ~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      +..+|++++..++..++..++++|+|++.. .+-+..++..||++.+..++.+.++.+|..+.|+|+++.-+.
T Consensus       420 v~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~  492 (678)
T KOG1293|consen  420 VAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC  492 (678)
T ss_pred             hHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence            889999999889999999999999999754 667778999999999999999999999999999999997654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=5.4e-09  Score=109.13  Aligned_cols=332  Identities=17%  Similarity=0.150  Sum_probs=211.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhh-----ChhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcC
Q 008940            7 RAVNSVIRRAADAITNLAHE-----NSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECN   80 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   80 (548)
                      ...|++|.-|+..+++++..     +.+.+..     +-..|+..+. .+.+.+|.+-+.++..+++..-..    ...+
T Consensus        48 ~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s-----iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPe  118 (1075)
T KOG2171|consen   48 SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS-----IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPE  118 (1075)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH-----HHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHH
Confidence            44567777777777777632     2222332     2234555444 456889999999999999732221    4567


Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940           81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  160 (548)
                      .++.|++..+++++..|+.|+.+|+++...-.+. ..-.-..+.+.+.+.+.+++..++..+++++..++...+.+....
T Consensus       119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~  197 (1075)
T KOG2171|consen  119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNT-LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEV  197 (1075)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHH
Confidence            7888889999999999999999999996543321 111111345666777777776699999999998886543222222


Q ss_pred             Hh-cCChHHHHHhh----CCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcCC--ChhHHHHHHHHHHh
Q 008940          161 VQ-RGAVRPLIEML----QSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYG  231 (548)
Q Consensus       161 ~~-~g~v~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~  231 (548)
                      .. ...+|.++..+    ..++......+..+|..++...+.  +..+.  ..+...+....+.  ++.+|..|+..|..
T Consensus       198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs  275 (1075)
T KOG2171|consen  198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVS  275 (1075)
T ss_pred             HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            22 23455555544    456777788888999998876654  22222  2344445555554  57899999999999


Q ss_pred             cccCCcchHHHHHhcCccccc----c------cc--hh--hh-------hhhHHHHHHHHHHHHhhhh-----hhhHHHH
Q 008940          232 LADNEDNVADFIRVGGVQKLQ----D------GE--FI--VQ-------ATKDCVAKTLKRLEEKIHG-----RVLNHLL  285 (548)
Q Consensus       232 l~~~~~~~~~~~~~g~i~~L~----~------~~--~~--~~-------~~~~~~~~~~~~~~~~~~~-----~~~~~L~  285 (548)
                      ++.+.....+.... .+..|+    .      ..  ..  ..       +.......+++++.....+     -+++.+-
T Consensus       276 ~~e~Ap~~~k~~~~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~  354 (1075)
T KOG2171|consen  276 LSEYAPAMCKKLAL-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALE  354 (1075)
T ss_pred             HHHhhHHHhhhchh-hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHH
Confidence            88763333222222 222221    1      00  00  00       1112223345555443332     2455555


Q ss_pred             HHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          286 YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       286 ~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      .++++.++.-|.+++.+|+.++.+......=.-...++..+..+++++|.||.+|+.++..++.+-
T Consensus       355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl  420 (1075)
T KOG2171|consen  355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL  420 (1075)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence            677789999999999999999887543321122457888899999999999999999999998753

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=4.5e-09  Score=102.95  Aligned_cols=296  Identities=19%  Similarity=0.173  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhc----CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRME----GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~----g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ...+.|..+|..+|+++.+.-..-...    -.+|.++++.+++++.+|..|+.++....-........-+ ...++.+.
T Consensus       143 n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lF  221 (885)
T KOG2023|consen  143 NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILF  221 (885)
T ss_pred             cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHH
Confidence            457788999999996555433221111    2478889999999999999999999888753222211111 23677888


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--cC
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RG  164 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g  164 (548)
                      .+-+++++++|+..++++.-|....++- -.-.-.++++.+++.-++.++++...||.....++.. +-.+..+..  ..
T Consensus       222 alanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L~p~l~k  299 (885)
T KOG2023|consen  222 ALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVLQPYLDK  299 (885)
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHHHHHHHH
Confidence            8888999999999999999997554431 1111235777888888889999999999999999854 444443322  34


Q ss_pred             ChHHHHHhhCCC--------------------------------------------------------CHHHHHHHHHHH
Q 008940          165 AVRPLIEMLQSP--------------------------------------------------------DVQLREMSAFAL  188 (548)
Q Consensus       165 ~v~~L~~ll~~~--------------------------------------------------------~~~v~~~a~~~L  188 (548)
                      .+|.|+.-+.-+                                                        +..+|+..+.+|
T Consensus       300 liPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaL  379 (885)
T KOG2023|consen  300 LIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAAL  379 (885)
T ss_pred             HHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHH
Confidence            555555544210                                                        023555555555


Q ss_pred             HHhhcCCcchhhhHhcCChHH----HHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHH
Q 008940          189 GRLAQDMHNQAGIAHNGGLVP----LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC  264 (548)
Q Consensus       189 ~~l~~~~~~~~~~~~~~~l~~----L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~  264 (548)
                      .-|+..-       ....++.    |-+.|.+.+..+++.+..+|+.++....       .|.++-|             
T Consensus       380 DVLanvf-------~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-------~g~~p~L-------------  432 (885)
T KOG2023|consen  380 DVLANVF-------GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-------QGFVPHL-------------  432 (885)
T ss_pred             HHHHHhh-------HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-------hhcccch-------------
Confidence            5554221       1123334    4444556778899999999998875421       1333332             


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC---CccceeeecCCchHHHHHhhcCCCCccchhhH
Q 008940          265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP---DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGA  341 (548)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  341 (548)
                                   ...++.++.+|.++.+.||..+||+|+.++..   .+..+.+.  -.+.-|++-+-++|..||++|+
T Consensus       433 -------------peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAc  497 (885)
T KOG2023|consen  433 -------------PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAAC  497 (885)
T ss_pred             -------------HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHH
Confidence                         13788999999999999999999999998753   22222221  1233334444478899999999


Q ss_pred             HHHHHHhhhc
Q 008940          342 VALFKLANKA  351 (548)
Q Consensus       342 ~~L~~l~~~~  351 (548)
                      .++.-+-+..
T Consensus       498 sAfAtleE~A  507 (885)
T KOG2023|consen  498 SAFATLEEEA  507 (885)
T ss_pred             HHHHHHHHhc
Confidence            9999987764

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.02  E-value=3.6e-09  Score=101.27  Aligned_cols=233  Identities=17%  Similarity=0.215  Sum_probs=159.5

Q ss_pred             HHHHHHHHHhhhChhhHHHHHhcCC---chHHHHhhcc--CCHHHHHHHHHHHHHhhccCcchhhHhhhc------CChH
Q 008940           15 RAADAITNLAHENSSIKTRVRMEGG---IPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVEC------NALP   83 (548)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~i~~~g~---i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------g~i~   83 (548)
                      .-+..+..+-...++.+..+.+..+   ...++.+|+.  ++.++....+..+..+...++...+.+...      ....
T Consensus        29 ~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~  108 (312)
T PF03224_consen   29 EDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYS  108 (312)
T ss_dssp             HHHHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHH
Confidence            4445555555444444433444433   5666777764  579999999999999998777777666652      3578


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc----CChHHHHHHHHHHHHhhcCCchhHHH
Q 008940           84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLGQFAATDSDCKVH  159 (548)
Q Consensus        84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~  159 (548)
                      ++++++..+|.-++..|+.+|..+....+....... .+.++.+++.+.+    ++.+.+..++.+|.++.. .+..|..
T Consensus       109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~  186 (312)
T PF03224_consen  109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQV  186 (312)
T ss_dssp             HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHH
Confidence            889989999999999999999999877655433222 4456777777665    345567889999999985 4899999


Q ss_pred             HHhcCChHHHHHhh-----C--CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHh
Q 008940          160 IVQRGAVRPLIEML-----Q--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYG  231 (548)
Q Consensus       160 ~~~~g~v~~L~~ll-----~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~  231 (548)
                      +.+.|+++.+.+++     .  ..+.+++..++.++|.|+.+++....+...+.++.|.++++. ..+++.+-++.++.|
T Consensus       187 f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~N  266 (312)
T PF03224_consen  187 FWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRN  266 (312)
T ss_dssp             HHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            99999999999999     2  245678999999999999999988888888888889999975 468899999999999


Q ss_pred             cccCCc--chHHHHHhcCcc
Q 008940          232 LADNED--NVADFIRVGGVQ  249 (548)
Q Consensus       232 l~~~~~--~~~~~~~~g~i~  249 (548)
                      +.....  ....++..|+++
T Consensus       267 l~~~~~~~~~~~mv~~~~l~  286 (312)
T PF03224_consen  267 LLSKAPKSNIELMVLCGLLK  286 (312)
T ss_dssp             TTSSSSTTHHHHHHHH-HHH
T ss_pred             HHhccHHHHHHHHHHccHHH
Confidence            987655  667776666443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1.3e-08  Score=102.41  Aligned_cols=257  Identities=16%  Similarity=0.164  Sum_probs=191.2

Q ss_pred             hHHHHhhccC-CHHHHHHHHHHHHHh-hccCcchhhHhhhcCChHHHHHHhccC-ChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           41 PPLVELLEFT-DTKVQRAAAGALRTL-AFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        41 ~~L~~ll~~~-~~~v~~~a~~~L~~l-~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      ..|++-|+.. |+..|..|+.-|..+ +.++++....+--.-.++.|+.+|+++ +.+++..|+++|.+|+...|.-...
T Consensus       170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~  249 (1051)
T KOG0168|consen  170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI  249 (1051)
T ss_pred             HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence            3444444443 777777777666544 446677666665566899999999865 7899999999999999888888889


Q ss_pred             HHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940          118 VLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  196 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  196 (548)
                      ++++++||.|+.-|.. ...++.+.++.+|-.+++..+   ..+.++|.+...+..+.--...++..|+.+..|+|..-.
T Consensus       250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999876654 568899999999999986543   458889999999998887677899999999999996643


Q ss_pred             c--hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHH
Q 008940          197 N--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE  274 (548)
Q Consensus       197 ~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~  274 (548)
                      .  -..+.  ..+|.|..+|...+....+.++.++.+++.....-                             .+.++.
T Consensus       327 sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~-----------------------------~~kLdq  375 (1051)
T KOG0168|consen  327 SDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG-----------------------------PDKLDQ  375 (1051)
T ss_pred             CccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC-----------------------------hHHHHH
Confidence            3  23333  47999999999999889999999999987543221                             122344


Q ss_pred             hhhhhhhHHHHHHHHhhh----hhhhhhHHHHhhhccCC-CccceeeecCCchHHHHHhhcC
Q 008940          275 KIHGRVLNHLLYLMRVAE----KGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS  331 (548)
Q Consensus       275 ~~~~~~~~~L~~ll~~~~----~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~  331 (548)
                      +...+.+....+++.-..    ..+.....+.|..++.+ +-.+..+.+.+....|..++..
T Consensus       376 l~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  376 LCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             HhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            555666666666665532    33445566777777776 4466677777888888887764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.98  E-value=6.7e-09  Score=108.26  Aligned_cols=312  Identities=18%  Similarity=0.182  Sum_probs=196.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +.+|.++..|+++|++++  +++....     .++.+.+++.++++.||..|+.++..+...+++....   . .++.+.
T Consensus        90 ~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~  158 (526)
T PF01602_consen   90 SPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLK  158 (526)
T ss_dssp             SSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHH
T ss_pred             CCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHh
Confidence            456788899999999988  3444432     4578889999999999999999999998755553222   2 588899


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      +++.++++.++..|+.++..+ ..++.... -.-...++.+.+++...++-.+..++..|..++...+.....   ...+
T Consensus       159 ~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i  233 (526)
T PF01602_consen  159 QLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRII  233 (526)
T ss_dssp             HHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHH
T ss_pred             hhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHH
Confidence            999999999999999999999 33232211 111234555566667788888889999999888655444321   4577


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG  246 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g  246 (548)
                      +.+..++++.++.+...++.++..+.....     ....+++.|..++.++++.++..++..|..++....  ..+....
T Consensus       234 ~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~--~~v~~~~  306 (526)
T PF01602_consen  234 EPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP--PAVFNQS  306 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH--HHHGTHH
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc--hhhhhhh
Confidence            888888888888999999999998876544     333568889999999999999999999999987541  1110000


Q ss_pred             -CcccccccchhhhhhhHHHHHHHHHHHHhhhh----hhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCCccceeeecCC
Q 008940          247 -GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG----RVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGG  320 (548)
Q Consensus       247 -~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~  320 (548)
                       .+..+.     ...+.......++-+..+.+.    .+++.|...+.. .+++++..++.+++.++......    ..-
T Consensus       307 ~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~----~~~  377 (526)
T PF01602_consen  307 LILFFLL-----YDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD----AEW  377 (526)
T ss_dssp             HHHHHHH-----CSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS----HHH
T ss_pred             hhhheec-----CCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch----HHH
Confidence             000000     011111222222222222221    245555555533 35556666666666665422100    012


Q ss_pred             chHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          321 GLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       321 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      .++.+++++..+++.+...+...+.++...
T Consensus       378 ~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~  407 (526)
T PF01602_consen  378 YVDTLLKLLEISGDYVSNEIINVIRDLLSN  407 (526)
T ss_dssp             HHHHHHHHHHCTGGGCHCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhccccccchHHHHHHHHhhc
Confidence            356666666655555555666666665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.97  E-value=1.8e-08  Score=96.49  Aligned_cols=214  Identities=21%  Similarity=0.260  Sum_probs=157.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhc------CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCC
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRME------GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA   81 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~------g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~   81 (548)
                      ..+++.+..+..+..+...++.....+...      ....+++++++++|..++..|+..|..+....+....... .+.
T Consensus        69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~  147 (312)
T PF03224_consen   69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEA  147 (312)
T ss_dssp             --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHH
T ss_pred             CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHH
Confidence            567899999999999998888776666652      2578888999999999999999999999875444433322 446


Q ss_pred             hHHHHHHhcc----CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh-----hc--CChHHHHHHHHHHHHhh
Q 008940           82 LPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-----SS--CCSESQREAALLLGQFA  150 (548)
Q Consensus        82 i~~Lv~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-----~~--~~~~~~~~a~~~L~~l~  150 (548)
                      ++.+++.+.+    ++.+++..++.+|.++... +..|..+.+.++++.+..++     .+  .+.++.+.++.++|-|+
T Consensus       148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS  226 (312)
T PF03224_consen  148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS  226 (312)
T ss_dssp             HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence            6777777764    4567789999999999754 88899999999999999999     22  33678899999999997


Q ss_pred             cCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc--chhhhHhcCChHHHHHhhcC--CChhHHHH
Q 008940          151 ATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH--NQAGIAHNGGLVPLLKLLDS--KNGSLQHN  224 (548)
Q Consensus       151 ~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~--~~~~v~~~  224 (548)
                       .+++....+.+.+.++.|+++++. ..+.+.+.++.+|.|+.....  ....++..|+++.+-.+...  .|+++...
T Consensus       227 -F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  227 -FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             -TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             -cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence             447777888888899999999986 567899999999999998877  66777776666655555543  35666543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.96  E-value=5.6e-09  Score=95.21  Aligned_cols=139  Identities=25%  Similarity=0.362  Sum_probs=117.0

Q ss_pred             eEEEchHHHHhcccHHHHhhhcCCCCCCCCC----ceecCCCCHHHHHHHHHHHhcCccccchHhHHHHHHHHHHhChHh
Q 008940          390 RRFYAHRICLLASSDAFRAMFDGGYREKDAR----DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEG  465 (548)
Q Consensus       390 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~----~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~a~~~~~~~  465 (548)
                      ..+|||+.+++ |.+||+.||.|+|.|++.+    ...+|.....+++..++|+|+.+.++.++-+.+++-.|+++-+.+
T Consensus       301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~  379 (516)
T KOG0511|consen  301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD  379 (516)
T ss_pred             ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence            45999999998 8889999999999996522    345677888999999999999999999999999999999997652


Q ss_pred             ---HHHHHHHHHHh---cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHH
Q 008940          466 ---LKRLCEYTIAQ---DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE  529 (548)
Q Consensus       466 ---l~~~c~~~l~~---~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~  529 (548)
                         |+......+.+   .++.-++++++..+.......|...+..|+.+|+..+...|+|.+.-+...+.
T Consensus       380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~r  449 (516)
T KOG0511|consen  380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVPR  449 (516)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccch
Confidence               56666555544   35667799999999999999999999999999999999999999875544433

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.94  E-value=1.1e-07  Score=92.36  Aligned_cols=263  Identities=16%  Similarity=0.167  Sum_probs=174.2

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      .-++..|+..|..+....+.........-....|...++++ +...+.-++.+|..+.. .++.|..+.+.++++.|+++
T Consensus       115 ~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~  193 (429)
T cd00256         115 QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKL  193 (429)
T ss_pred             hhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHH
Confidence            35678888888888743332211111011223445555543 47788888999999997 68899999999999999999


Q ss_pred             hccC--ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCC------chhHHH
Q 008940           89 LRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATD------SDCKVH  159 (548)
Q Consensus        89 l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~------~~~~~~  159 (548)
                      |+..  +..++..++.+++-++.. ++..+.+...+.|+.++++++... +++.+.++.+|.|+....      ......
T Consensus       194 L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~  272 (429)
T cd00256         194 LSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQ  272 (429)
T ss_pred             HhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence            9843  568899999999999866 445566677899999999998754 779999999999998642      123345


Q ss_pred             HHhcCChHHHHHhhCC--CCHHHHHHHH-------HHHHHhhcC---------------Ccch---------hhhHhcC-
Q 008940          160 IVQRGAVRPLIEMLQS--PDVQLREMSA-------FALGRLAQD---------------MHNQ---------AGIAHNG-  205 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~--~~~~v~~~a~-------~~L~~l~~~---------------~~~~---------~~~~~~~-  205 (548)
                      ++..|+.+.+-.+...  +|+++.+..-       .-+..++..               +..+         ..+.+.+ 
T Consensus       273 mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~  352 (429)
T cd00256         273 MVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNY  352 (429)
T ss_pred             HHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcch
Confidence            5666665544444433  4555443221       111222211               1111         1222222 


Q ss_pred             -ChHHHHHhhc-CCChhHHHHHHHHHHhcccCC-cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhH
Q 008940          206 -GLVPLLKLLD-SKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN  282 (548)
Q Consensus       206 -~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (548)
                       .+..|..+|. +.++.+..-||.=|+.++++. .++..+.+.|                                 +=.
T Consensus       353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg---------------------------------~K~  399 (429)
T cd00256         353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG---------------------------------GKQ  399 (429)
T ss_pred             HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC---------------------------------cHH
Confidence             2455788885 456777778888888888854 4444333333                                 456


Q ss_pred             HHHHHHHhhhhhhhhhHHHHhhhcc
Q 008940          283 HLLYLMRVAEKGVQRRVALALAHLC  307 (548)
Q Consensus       283 ~L~~ll~~~~~~~~~~a~~aL~~l~  307 (548)
                      .++.+|.++++++|.+|+.|+..+.
T Consensus       400 ~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         400 RVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            7889999999999999999998774

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.93  E-value=8.7e-08  Score=94.36  Aligned_cols=309  Identities=15%  Similarity=0.121  Sum_probs=203.1

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC-HHHHHHHHHHHHHhhccCcch---------------
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDEN---------------   72 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~---------------   72 (548)
                      +++.......++..+..+.......+.+.+.++.|.+++.++| ..++...++.+..+.+.++..               
T Consensus        66 s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~  145 (678)
T KOG1293|consen   66 STELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKF  145 (678)
T ss_pred             chhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence            3455666777788887777777788888999999999999888 778888888888887643221               


Q ss_pred             ----------------------------hhHhhhcCChHHHHHHhccCChHHHHHHHHHHH---HhhcCChhHHH----H
Q 008940           73 ----------------------------KNQIVECNALPTLILMLRSEDSAIHYEAVGVIG---NLVHSSPNIKK----E  117 (548)
Q Consensus        73 ----------------------------~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~---~l~~~~~~~~~----~  117 (548)
                                                  +..+.+.|+.+.+.-++...+..+|..|...++   ++...++....    .
T Consensus       146 s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~  225 (678)
T KOG1293|consen  146 SLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGL  225 (678)
T ss_pred             HHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHH
Confidence                                        112223333334333444445678888888888   77666665322    2


Q ss_pred             HHhcCChH--HHHHhhhcCChHHHHHHHHHHHHhhcCC------------------------------------------
Q 008940          118 VLAAGALQ--PVIGLLSSCCSESQREAALLLGQFAATD------------------------------------------  153 (548)
Q Consensus       118 ~~~~g~i~--~L~~ll~~~~~~~~~~a~~~L~~l~~~~------------------------------------------  153 (548)
                      ....|+.+  .+.+++++++...+..++.++.++...+                                          
T Consensus       226 L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~  305 (678)
T KOG1293|consen  226 LKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNV  305 (678)
T ss_pred             HhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhh
Confidence            33345554  4556666666555555555555544221                                          


Q ss_pred             ---------chhHHHHHhcCChHHHHHhh---------------------------------------------------
Q 008940          154 ---------SDCKVHIVQRGAVRPLIEML---------------------------------------------------  173 (548)
Q Consensus       154 ---------~~~~~~~~~~g~v~~L~~ll---------------------------------------------------  173 (548)
                               +..+....+....+...+++                                                   
T Consensus       306 l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~  385 (678)
T KOG1293|consen  306 LFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCL  385 (678)
T ss_pred             hHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccc
Confidence                     00000111111112222221                                                   


Q ss_pred             -CCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc-CCcchHHHHHhcCccc
Q 008940          174 -QSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQK  250 (548)
Q Consensus       174 -~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~  250 (548)
                       ...|...+..++.++.+++..-.. +..+....+..++++++..++..+...++++|+|+.. ..+.+..|.+.|    
T Consensus       386 ~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~n----  461 (678)
T KOG1293|consen  386 PPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNN----  461 (678)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcC----
Confidence             112445566666666666644322 3335566778899999999999999999999999976 466677776666    


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc--cceeeecCCchHHHHHh
Q 008940          251 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGL  328 (548)
Q Consensus       251 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~--~~~~~~~~~~i~~L~~l  328 (548)
                                                   ++..+..++.+.++.+|..+.|+|.++..+.+  .+..+...=+...+..+
T Consensus       462 -----------------------------gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l  512 (678)
T KOG1293|consen  462 -----------------------------GIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDL  512 (678)
T ss_pred             -----------------------------cHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHH
Confidence                                         56667788889999999999999999987654  33444444456778888


Q ss_pred             hcCCCCccchhhHHHHHHHhhh
Q 008940          329 LGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       329 l~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      ..+++..||..+...|+|+..+
T Consensus       513 ~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  513 INDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HhCCCHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999875

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.8e-07  Score=94.45  Aligned_cols=202  Identities=21%  Similarity=0.236  Sum_probs=154.4

Q ss_pred             hhHHHHHHHHHHHHHh-hhChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            9 VNSVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      .|..|-+|+.-|+.+. .++++.-.-+--.-.+|.|+.+|++. +.+++..|+++|.+|+.--|+....+++++.++.|+
T Consensus       181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~  260 (1051)
T KOG0168|consen  181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL  260 (1051)
T ss_pred             ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence            4555656665555543 35666555455556789999999875 599999999999999998899999999999999998


Q ss_pred             HHh-ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC-chhHHHHHhcC
Q 008940           87 LML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRG  164 (548)
Q Consensus        87 ~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g  164 (548)
                      .-| .-.-.++.++++.+|-.|+...+   ..+.+.|++-..+.++.--...+++.|+.+..|.|..- ++....++  .
T Consensus       261 ~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--e  335 (1051)
T KOG0168|consen  261 EKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--E  335 (1051)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--H
Confidence            755 45678999999999999986544   56788999999999998888889999999999999542 22223344  4


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc----hhhhHhcCChHHHHHhhc
Q 008940          165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN----QAGIAHNGGLVPLLKLLD  215 (548)
Q Consensus       165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~l~~L~~ll~  215 (548)
                      .+|.|..+|+..+....+.++-++..++.....    -.++...+.+....+++.
T Consensus       336 alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls  390 (1051)
T KOG0168|consen  336 ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS  390 (1051)
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence            899999999999999999999999998855432    233444455555555553

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=1.7e-06  Score=86.83  Aligned_cols=306  Identities=16%  Similarity=0.107  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHHHhhh-ChhhHHHHHhcCCchHHHHhhc--cCCHHHHHHHHHHHHHhhccCcchhhHhhhcC-ChHHHH
Q 008940           11 SVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECN-ALPTLI   86 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~Lv   86 (548)
                      .+++.++.+|+.+|++ +|+ .-.-....++..++.-.+  .++..+|..|+.+|.+-..-...|-..-.+.+ +++...
T Consensus       145 ~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc  223 (859)
T KOG1241|consen  145 MVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC  223 (859)
T ss_pred             HHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee
Confidence            4788999999999964 333 211222345667777554  35688999999999987652222222111222 344555


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchh----------
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC----------  156 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~----------  156 (548)
                      +.-.+++.+++..|..+|..|.+-..+.-...+.......-+.-+.+.++++...+....+++|...-+.          
T Consensus       224 Eatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~  303 (859)
T KOG1241|consen  224 EATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ  303 (859)
T ss_pred             ecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6666889999999999999998766665555555566777778888999999999999989888421110          


Q ss_pred             -----HHHH---HhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhH
Q 008940          157 -----KVHI---VQRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL  221 (548)
Q Consensus       157 -----~~~~---~~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v  221 (548)
                           ...+   .-.+++|.|+++|..       ++......|..||.-++.....  .++. ..++-+-+-+++++..-
T Consensus       304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D--~Iv~-~Vl~Fiee~i~~pdwr~  380 (859)
T KOG1241|consen  304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD--DIVP-HVLPFIEENIQNPDWRN  380 (859)
T ss_pred             CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc--cchh-hhHHHHHHhcCCcchhh
Confidence                 0001   113577888888864       2345666666677666544322  1221 22333334566788888


Q ss_pred             HHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHH
Q 008940          222 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL  301 (548)
Q Consensus       222 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~  301 (548)
                      +..++.+++.+-..++.....                                -.-.+.++.++.++.++.-.++..++|
T Consensus       381 reaavmAFGSIl~gp~~~~Lt--------------------------------~iV~qalp~ii~lm~D~sl~VkdTaAw  428 (859)
T KOG1241|consen  381 REAAVMAFGSILEGPEPDKLT--------------------------------PIVIQALPSIINLMSDPSLWVKDTAAW  428 (859)
T ss_pred             hhHHHHHHHhhhcCCchhhhh--------------------------------HHHhhhhHHHHHHhcCchhhhcchHHH
Confidence            899999999887765432211                                111246788889999888899999999


Q ss_pred             HhhhccCCCc-cc-eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhccc
Q 008940          302 ALAHLCSPDD-QR-TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT  353 (548)
Q Consensus       302 aL~~l~~~~~-~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  353 (548)
                      +++.++..-. .. ........++.+++-+. ..|.+..+++|++.+|++..+.
T Consensus       429 tlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~e  481 (859)
T KOG1241|consen  429 TLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYE  481 (859)
T ss_pred             HHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHH
Confidence            9999987532 11 12223345566666664 4688999999999999987653

>PTZ00429 beta-adaptin; Provisional

Probab=98.84  E-value=6.6e-07  Score=93.83  Aligned_cols=258  Identities=16%  Similarity=0.059  Sum_probs=181.6

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      +.+.+++++.+++.+++......+.+.+..+++....     .+..+.+-+.++++.+|..|+++++++-.  ++..+. 
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-  140 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-  140 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-
Confidence            3456778888999999999999999998755554333     46677888889999999999999999843  433333 


Q ss_pred             HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940          119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  198 (548)
Q Consensus       119 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  198 (548)
                          .++.+.+.+.+.++-||+.|+.++.++...+++   .+.+.|.++.|.+++.+.++.|..+|+.+|..+....+..
T Consensus       141 ----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~  213 (746)
T PTZ00429        141 ----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK  213 (746)
T ss_pred             ----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence                456788889999999999999999999765543   3445688899999999999999999999999998654432


Q ss_pred             hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhh
Q 008940          199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG  278 (548)
Q Consensus       199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (548)
                      -. ...+.+..++..+...++..+...+.+|.......+.  .                                   ..
T Consensus       214 l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~--e-----------------------------------~~  255 (746)
T PTZ00429        214 IE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE--S-----------------------------------AE  255 (746)
T ss_pred             hH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH--H-----------------------------------HH
Confidence            11 2223455566666666777777777777553211110  0                                   01


Q ss_pred             hhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC--ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          279 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPD--DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       279 ~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      .++..+...|++.++.|..+|+.++.++....  +...... ....+.|+.| .++++++|..+...+..+....
T Consensus       256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~  328 (746)
T PTZ00429        256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIF  328 (746)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC
Confidence            35677778888889999999999999887542  1111100 0122455555 3567788888887776666543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=1.8e-06  Score=86.85  Aligned_cols=275  Identities=19%  Similarity=0.269  Sum_probs=199.8

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc--CCHHHHHHHHHHHHHhhccCc------chh-----
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKND------ENK-----   73 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~------~~~-----   73 (548)
                      .+.++-|+.|++.|-.+++   ..|..+. ..|+++|+..|+.  .|+++...++.++.++..+++      +.+     
T Consensus        34 sTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~  109 (970)
T KOG0946|consen   34 STLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDL  109 (970)
T ss_pred             ccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHH
Confidence            4557789999999999994   4555544 5788999999986  469999999999999987542      122     


Q ss_pred             -----hH-hhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCC-hhHHHHHHh-cCChHHHHHhhhcCChHHHHHHHHH
Q 008940           74 -----NQ-IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLA-AGALQPVIGLLSSCCSESQREAALL  145 (548)
Q Consensus        74 -----~~-~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~  145 (548)
                           +. +...+.+..++..+...|-.||..++..+.++.+.. .+.++.+.. ..+|..++.+|.+..+.+|..++..
T Consensus       110 g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLl  189 (970)
T KOG0946|consen  110 GLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILL  189 (970)
T ss_pred             HHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHH
Confidence                 23 334688999999999999999999999999996554 455665554 5799999999999999999999999


Q ss_pred             HHHhhcCCchhHHHHHhcCChHHHHHhhCCC---C-HHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHHHhhcC---C
Q 008940          146 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSP---D-VQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDS---K  217 (548)
Q Consensus       146 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~---~-~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~---~  217 (548)
                      |..+..+++..+..++=.++...|..++..+   + .-|.+.|+..|.||-.+. .++..+.+.+.++.|..+|..   +
T Consensus       190 L~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~  269 (970)
T KOG0946|consen  190 LSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFG  269 (970)
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCccccc
Confidence            9999999888888887789999999999863   2 247889999999999665 567788888889999988752   2


Q ss_pred             Ch-----hHHH-----HHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHH
Q 008940          218 NG-----SLQH-----NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL  287 (548)
Q Consensus       218 ~~-----~v~~-----~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l  287 (548)
                      +.     .-++     .++.++..+.. +.+....                         ...+...+...+.+..|..+
T Consensus       270 d~Ev~~W~~Qrv~Nv~~~Lqivr~lVs-P~Nt~~~-------------------------~~q~qk~l~ss~ll~~Lc~i  323 (970)
T KOG0946|consen  270 DGEVFGWSTQRVQNVIEALQIVRSLVS-PGNTSSI-------------------------THQNQKALVSSHLLDVLCTI  323 (970)
T ss_pred             CcccccccHHHHHHHHHHHHHHHHhcC-CCCcHHH-------------------------HHHHHHHHHHcchHHHHHHH
Confidence            21     1111     22233333322 2221111                         01111234455567777777


Q ss_pred             HHhh--hhhhhhhHHHHhhhccCCCc
Q 008940          288 MRVA--EKGVQRRVALALAHLCSPDD  311 (548)
Q Consensus       288 l~~~--~~~~~~~a~~aL~~l~~~~~  311 (548)
                      +-++  ..+++..+..++++.+++..
T Consensus       324 l~~~~vp~dIltesiitvAevVRgn~  349 (970)
T KOG0946|consen  324 LMHPGVPADILTESIITVAEVVRGNA  349 (970)
T ss_pred             HcCCCCcHhHHHHHHHHHHHHHHhch
Confidence            7664  56778888888888877643

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=1.5e-06  Score=78.09  Aligned_cols=291  Identities=16%  Similarity=0.119  Sum_probs=187.9

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh
Q 008940           41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA  120 (548)
Q Consensus        41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  120 (548)
                      ..++.++.+.++.++..|+..+..++.. ......-.+...++.+.+++++.++  .+.|+.+|.|++.+ +..++.+..
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~   81 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ   81 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence            3588999999999999999999999863 2211111223467788889887666  77789999999876 666777776


Q ss_pred             cCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh------cCChHHHHHhhCCCCH--HHHHHHHHHHHHhh
Q 008940          121 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVRPLIEMLQSPDV--QLREMSAFALGRLA  192 (548)
Q Consensus       121 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~g~v~~L~~ll~~~~~--~v~~~a~~~L~~l~  192 (548)
                      . .+..++..+.++........+..|.|+++...........      .|.+.........+-.  .--...+..+.|++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            6 8888888888887888899999999999776554443322      3444444444444321  22356778899999


Q ss_pred             cCCcchhhhHhcCChHH--HHHhhcCCChhHHH-HHHHHHHhcccCCcchHHHHHhc--CcccccccchhhhhhhHHHHH
Q 008940          193 QDMHNQAGIAHNGGLVP--LLKLLDSKNGSLQH-NAAFALYGLADNEDNVADFIRVG--GVQKLQDGEFIVQATKDCVAK  267 (548)
Q Consensus       193 ~~~~~~~~~~~~~~l~~--L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~g--~i~~L~~~~~~~~~~~~~~~~  267 (548)
                      +....|..+.....++.  +..+ .+.+..+++ ..+++|.|.|.+......+...+  +++.++--....         
T Consensus       161 ~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagp---------  230 (353)
T KOG2973|consen  161 QFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGP---------  230 (353)
T ss_pred             hhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCc---------
Confidence            98888877766554333  3333 334445554 56789999998877766665422  222111000000         


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHH-----hhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcC-CCCccchhhH
Q 008940          268 TLKRLEEKIHGRVLNHLLYLMR-----VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGA  341 (548)
Q Consensus       268 ~~~~~~~~~~~~~~~~L~~ll~-----~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~  341 (548)
                        +.+.+ -+..-+|.=++++-     .+++.+|..-+.+|..|+....+|..+...|+-+++-.+-.. .+++++..+-
T Consensus       231 --ee~sE-Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace  307 (353)
T KOG2973|consen  231 --EELSE-EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACE  307 (353)
T ss_pred             --cccCH-HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHH
Confidence              00000 01112222235554     268899999999999999999999998888877766666554 4455555444


Q ss_pred             HHHHHHhh
Q 008940          342 VALFKLAN  349 (548)
Q Consensus       342 ~~L~~l~~  349 (548)
                      ....-+..
T Consensus       308 ~vvq~Lv~  315 (353)
T KOG2973|consen  308 QVVQMLVR  315 (353)
T ss_pred             HHHHHHHh
Confidence            44444444

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=3e-06  Score=76.21  Aligned_cols=235  Identities=17%  Similarity=0.159  Sum_probs=161.4

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhChhhHHHHH-hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940            6 SRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT   84 (548)
Q Consensus         6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   84 (548)
                      ...+|.++..|...+..++..  ..+.... +...++.+.+++...++  ...|+.+|.|++. ++..++.+.+. .+..
T Consensus        13 ~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~   86 (353)
T KOG2973|consen   13 HSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKV   86 (353)
T ss_pred             ccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHH
Confidence            456789999999999999843  3333222 22456778889987776  7789999999998 67788888777 8888


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh------cCChHHHHHhhhcCCh--HHHHHHHHHHHHhhcCCchh
Q 008940           85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDC  156 (548)
Q Consensus        85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~  156 (548)
                      ++..+.++....-...+.+|.|++.+.......+..      .|.+.........+..  .-....+..+.|+++. +..
T Consensus        87 l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~-~~g  165 (353)
T KOG2973|consen   87 LMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQF-EAG  165 (353)
T ss_pred             HHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhh-hhh
Confidence            888888888888999999999999987766554433      3344444444444332  3446677888999754 666


Q ss_pred             HHHHHhcCChH--HHHHhhCCCCHHHH-HHHHHHHHHhhcCCcchhhhHhcC--ChHH-H--------------------
Q 008940          157 KVHIVQRGAVR--PLIEMLQSPDVQLR-EMSAFALGRLAQDMHNQAGIAHNG--GLVP-L--------------------  210 (548)
Q Consensus       157 ~~~~~~~g~v~--~L~~ll~~~~~~v~-~~a~~~L~~l~~~~~~~~~~~~~~--~l~~-L--------------------  210 (548)
                      |..+.+...++  .+.. +.+.+..+| ...+++|.|+|.+...+..+.+.+  .++. |                    
T Consensus       166 R~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~e  244 (353)
T KOG2973|consen  166 RKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVE  244 (353)
T ss_pred             hhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHh
Confidence            66666554333  2333 333555665 577899999998887776665522  1222 1                    


Q ss_pred             HHhhc-----CCChhHHHHHHHHHHhcccCCcchHHHHHhcCc
Q 008940          211 LKLLD-----SKNGSLQHNAAFALYGLADNEDNVADFIRVGGV  248 (548)
Q Consensus       211 ~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i  248 (548)
                      ++++.     .+++.++..-+.+|..||....+++.+...|+-
T Consensus       245 LQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvY  287 (353)
T KOG2973|consen  245 LQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVY  287 (353)
T ss_pred             hhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCch
Confidence            12332     346788889999999999888888887766643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=1e-06  Score=91.12  Aligned_cols=181  Identities=16%  Similarity=0.166  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-
Q 008940           55 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-  133 (548)
Q Consensus        55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-  133 (548)
                      |.+|+..|+....-.+-....-..-|+.|..+++|.++-.++|-.-+.+...+...++.++..+++.++-..+++.+.. 
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~  566 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS  566 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence            5677888888877667777778888999999999999999999999999999877779999999999888888888877 


Q ss_pred             C--ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHH
Q 008940          134 C--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVP  209 (548)
Q Consensus       134 ~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~  209 (548)
                      .  +++-+..|+.+|+.++.+.+-.+....+.+.+...+..|.++ .+-++.+++-+|+.|-.+.+. +-.-.+.++-+.
T Consensus       567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek  646 (1387)
T KOG1517|consen  567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK  646 (1387)
T ss_pred             CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence            2  257889999999999999888888899999999999999985 788999999999999977654 444566788899


Q ss_pred             HHHhhcCCChhHHHHHHHHHHhcccC
Q 008940          210 LLKLLDSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       210 L~~ll~~~~~~v~~~a~~~L~~l~~~  235 (548)
                      |..+|.++-++|+..|+.+|+.+..+
T Consensus       647 L~~~LsD~vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  647 LILLLSDPVPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999764

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.63  E-value=3.6e-06  Score=79.06  Aligned_cols=262  Identities=17%  Similarity=0.165  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhcC-CchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      -+.+.+.+.++.++......-. ..+.. ....|...+++ .+++-...++++|..+.. -++.|-.+...+++..++..
T Consensus       129 ~iv~~~~~Ils~la~~g~~~~~-~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~  206 (442)
T KOG2759|consen  129 FIVEMSFRILSKLACFGNCKME-LSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRI  206 (442)
T ss_pred             HHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHH
Confidence            3445566777777642221111 00000 12234445555 567788899999999998 69999999999999999998


Q ss_pred             hc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCc------hhHHH
Q 008940           89 LR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDS------DCKVH  159 (548)
Q Consensus        89 l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~------~~~~~  159 (548)
                      +.  ..+-.++.+.+.+++.|+.. +...+.+...+.|+.|.++++... ++|.+.++.++.|++...+      .....
T Consensus       207 l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~  285 (442)
T KOG2759|consen  207 LASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQ  285 (442)
T ss_pred             HhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence            84  34678999999999999765 555677777899999999998754 7799999999999997664      33345


Q ss_pred             HHhcCChHHHHHhhCC--CCHHHHHHHHHHHH-------Hhhc---------------CCcc-hhhhH--------hc--
Q 008940          160 IVQRGAVRPLIEMLQS--PDVQLREMSAFALG-------RLAQ---------------DMHN-QAGIA--------HN--  204 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~-------~l~~---------------~~~~-~~~~~--------~~--  204 (548)
                      ++..++.+.+-.+-+.  +|+++....-..-.       .|+.               ++.. ...+.        +.  
T Consensus       286 mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnenny  365 (442)
T KOG2759|consen  286 MVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNY  365 (442)
T ss_pred             HHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccH
Confidence            5555555555444433  45554433222111       1221               1111 11121        11  


Q ss_pred             CChHHHHHhhcCCC-hhHHHHHHHHHHhcccC-CcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhH
Q 008940          205 GGLVPLLKLLDSKN-GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN  282 (548)
Q Consensus       205 ~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (548)
                      ..+..|+.+|+..+ |.+..-||.=++.+.++ ++++..+.+.|                                 +=+
T Consensus       366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~g---------------------------------gKe  412 (442)
T KOG2759|consen  366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYG---------------------------------GKE  412 (442)
T ss_pred             HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhc---------------------------------hHH
Confidence            23566788887654 77777888888888774 55554444444                                 667


Q ss_pred             HHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940          283 HLLYLMRVAEKGVQRRVALALAHLCS  308 (548)
Q Consensus       283 ~L~~ll~~~~~~~~~~a~~aL~~l~~  308 (548)
                      .++.+|.++|++||.+|+.|+..+..
T Consensus       413 ~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  413 RVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            88899999999999999999987754

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=3.1e-06  Score=76.66  Aligned_cols=281  Identities=16%  Similarity=0.149  Sum_probs=199.2

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchh----hHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK----NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN  113 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~  113 (548)
                      +..+.|-.-|..++..++..++..++.+..+.+.|.    ..+++.|+++.++.++..+|.++...|...+..++.. +.
T Consensus        82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-pa  160 (524)
T KOG4413|consen   82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PA  160 (524)
T ss_pred             hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HH
Confidence            455666677778899999999999999988655332    3455789999999999999999999999999999876 54


Q ss_pred             HHHHHHhcCChHHH--HHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 008940          114 IKKEVLAAGALQPV--IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGR  190 (548)
Q Consensus       114 ~~~~~~~~g~i~~L--~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~  190 (548)
                      .-+.+.+......+  ..+....+.-++......+..+.+-++......-+.|.+..|..-|+. +|.-++..+......
T Consensus       161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            45666666655543  333444455566777778888888888888888889999999998887 677889999999999


Q ss_pred             hhcCCcchhhhHhcCChHHHHHhhcCC--ChhHHHHHHHHHHhcccCCcc----hHHHHHhcCcccccccchhhhhhhHH
Q 008940          191 LAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDN----VADFIRVGGVQKLQDGEFIVQATKDC  264 (548)
Q Consensus       191 l~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~----~~~~~~~g~i~~L~~~~~~~~~~~~~  264 (548)
                      |+.....+..+.+.|.++.+.+.+.-.  +|--.-.++...+.+-.+...    -+++++.                   
T Consensus       241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicea-------------------  301 (524)
T KOG4413|consen  241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEA-------------------  301 (524)
T ss_pred             HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHH-------------------
Confidence            999988898888889888888887632  333233344444444322211    1111110                   


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCc--hHHHHHhhcCCC-CccchhhH
Q 008940          265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG--LELLLGLLGSTN-PKQQLDGA  341 (548)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~--i~~L~~ll~~~~-~~v~~~a~  341 (548)
                             +     .-++...+......|++.+..|..+++.+-++.++.+.+...|-  ...++.-..+.+ ..-+..+.
T Consensus       302 -------l-----iiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaai  369 (524)
T KOG4413|consen  302 -------L-----IIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAI  369 (524)
T ss_pred             -------H-----HHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHH
Confidence                   0     01344445667778999999999999999999888877776553  233333333333 33367788


Q ss_pred             HHHHHHhhh
Q 008940          342 VALFKLANK  350 (548)
Q Consensus       342 ~~L~~l~~~  350 (548)
                      .+|.+++..
T Consensus       370 haLaaIage  378 (524)
T KOG4413|consen  370 HALAAIAGE  378 (524)
T ss_pred             HHHHHhhcc
Confidence            888888764

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=2.4e-06  Score=82.77  Aligned_cols=312  Identities=13%  Similarity=0.092  Sum_probs=201.6

Q ss_pred             cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940           37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      .+++++++..+.+++..+|..||..+.|++.. ........-..+...+-++..+.+..++..| ..+-.+..+-..-+.
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~  160 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA  160 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc
Confidence            47899999999999999999999999999963 2222222223355566666666666665443 333333211000001


Q ss_pred             -HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940          117 -EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       117 -~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  195 (548)
                       .+.-.+.+|.|-.-+...++.+|...+..|.-+-+. |+..-.-.-...++.|+..|.+++++++..+-.+++++-..-
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI  239 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI  239 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence             122234566666666667888998888888887433 333222233567888999999999999988888777766443


Q ss_pred             cchhhh-HhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcC----cccccccchhhhhhhHHHHHHHH
Q 008940          196 HNQAGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG----VQKLQDGEFIVQATKDCVAKTLK  270 (548)
Q Consensus       196 ~~~~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~----i~~L~~~~~~~~~~~~~~~~~~~  270 (548)
                      .+.... -....++.++.-+.++++.++..|+.-|..+..-....-...-.|+    +|.+.+.+..  ....|......
T Consensus       240 ~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~--~i~~~a~~~n~  317 (675)
T KOG0212|consen  240 RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM--SIKEYAQMVNG  317 (675)
T ss_pred             hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc--cHHHHHHHHHH
Confidence            333222 2234567788888999999999888777777654333333333343    3333322111  11222221111


Q ss_pred             HHHHh---------hh-hhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhh
Q 008940          271 RLEEK---------IH-GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDG  340 (548)
Q Consensus       271 ~~~~~---------~~-~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  340 (548)
                      .+-..         ++ +.++..+...+.+...+.|..++.-+..+-....++-........+.|+.-|++++.+|...+
T Consensus       318 ~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~  397 (675)
T KOG0212|consen  318 LLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLA  397 (675)
T ss_pred             HHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHH
Confidence            11111         22 246777788888889999999999999998777777777777888999999999999999999


Q ss_pred             HHHHHHHhhhccc
Q 008940          341 AVALFKLANKATT  353 (548)
Q Consensus       341 ~~~L~~l~~~~~~  353 (548)
                      ...+.+++.+...
T Consensus       398 L~lla~i~~s~~~  410 (675)
T KOG0212|consen  398 LSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHHhcCccc
Confidence            9999999987543

>PTZ00429 beta-adaptin; Provisional

Probab=98.60  E-value=1.9e-05  Score=83.05  Aligned_cols=284  Identities=14%  Similarity=0.048  Sum_probs=174.7

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      +..+.+-++++|+.+|..|++++..+-.  ++..+.     .++.+.+.+.+.++-||+.|+.++.++...+++   .+.
T Consensus       107 INtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~  176 (746)
T PTZ00429        107 VNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFY  176 (746)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---ccc
Confidence            4566777788899999999999988774  332222     456677888899999999999999999765553   344


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA  199 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  199 (548)
                      +.|.++.|.+++.+.++.+...|+.+|..+...++...  -...+.+..++..+.+-++-.+...+.+|....  +....
T Consensus       177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~  252 (746)
T PTZ00429        177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKE  252 (746)
T ss_pred             ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcH
Confidence            56788999999999999999999999999976544321  223455677777777666666666666664422  21111


Q ss_pred             hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC--cchHHHH-HhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940          200 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE--DNVADFI-RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  276 (548)
Q Consensus       200 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~-~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  276 (548)
                      ..  ...+..+...|++.++.|...|+.++.++....  +...... +.+  .+|+....   ......--.+.++..+.
T Consensus       253 e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~--~pLv~L~s---s~~eiqyvaLr~I~~i~  325 (746)
T PTZ00429        253 SA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVN--TALLTLSR---RDAETQYIVCKNIHALL  325 (746)
T ss_pred             HH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH--HHHHHhhC---CCccHHHHHHHHHHHHH
Confidence            11  235666778888999999999999999987642  2112211 111  11111100   00011111222222221


Q ss_pred             h--hhhhHHHHHHH---HhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          277 H--GRVLNHLLYLM---RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       277 ~--~~~~~~L~~ll---~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      .  ..++..-+...   .+....++...+..|..++.......      .+.-|.....+.+.+.+..+..++++++.+
T Consensus       326 ~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~------IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k  398 (746)
T PTZ00429        326 VIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPE------ILKELAEYASGVDMVFVVEVVRAIASLAIK  398 (746)
T ss_pred             HHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHH------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence            1  11222222211   12233467777777777776554332      234455555566677788888888888765

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.57  E-value=5.4e-07  Score=70.47  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=110.4

Q ss_pred             CchHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           39 GIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        39 ~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      .+..|+.-. ...+.+.++....-|.|.+. +|.|...+.+.++++.++..+..++..+++.++..|+|+|.+ +...+.
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~   94 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHH
Confidence            344555433 45678899999999999996 899999999999999999999999999999999999999977 667789


Q ss_pred             HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHH
Q 008940          118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE  171 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~  171 (548)
                      +.+.+++|.++..++++...+...++.++..++......+..+....+++.+..
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r  148 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR  148 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence            999999999999999999999999999999998776666666655444444433

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.57  E-value=1.3e-06  Score=82.75  Aligned_cols=172  Identities=20%  Similarity=0.219  Sum_probs=142.1

Q ss_pred             hHhhhcCChHHHHHHhccCChH--HHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhh
Q 008940           74 NQIVECNALPTLILMLRSEDSA--IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFA  150 (548)
Q Consensus        74 ~~~~~~g~i~~Lv~ll~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~  150 (548)
                      +.+...|+++.|++++..++.+  ++..+.++|..+..  .++++.+...| +..++.+.+ .+.++..+..+.+|.++.
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            3455678999999999988654  58999999999864  56678888877 555555554 345788899999999999


Q ss_pred             cCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--cchhhhHhcCChHHHHHhhcCCChhHHHHHHHH
Q 008940          151 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA  228 (548)
Q Consensus       151 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  228 (548)
                      .++++....++..|+++.++...+..+|.+..+++-+|+|++...  ..++.+++..+-+.|+.+..+.++-.+.+||.+
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA  330 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA  330 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence            998899999999999999999999999999999999999998554  447788888888888888888888889999999


Q ss_pred             HHhcccCCcchHHHHHhcCc
Q 008940          229 LYGLADNEDNVADFIRVGGV  248 (548)
Q Consensus       229 L~~l~~~~~~~~~~~~~g~i  248 (548)
                      .+-++.+.+.-..+.+.|.+
T Consensus       331 V~vlat~KE~E~~VrkS~Tl  350 (832)
T KOG3678|consen  331 VAVLATNKEVEREVRKSGTL  350 (832)
T ss_pred             HhhhhhhhhhhHHHhhccch
Confidence            99999988776666666643

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.3e-05  Score=71.19  Aligned_cols=313  Identities=17%  Similarity=0.155  Sum_probs=213.5

Q ss_pred             HHHHHHHHHHHHHhhhChhh----HHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH-
Q 008940           11 SVIRRAADAITNLAHENSSI----KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL-   85 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~----~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-   85 (548)
                      .++.-+|..+..+..+.+.+    -..+...|+.+.++..+..+|.++...|...+..++. -+.....+...+..+.+ 
T Consensus        97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlh  175 (524)
T KOG4413|consen   97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLH  175 (524)
T ss_pred             hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHH
Confidence            45666777777777554422    2334577889999999999999999999999999998 57777777777766654 


Q ss_pred             -HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 008940           86 -ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQR  163 (548)
Q Consensus        86 -v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  163 (548)
                       ..+-..-+.-.|..+...+..+.+-+++........|.+..|..-++. .+.-++..+......|+.. ...+..+.+.
T Consensus       176 lrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQe  254 (524)
T KOG4413|consen  176 LRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQE  254 (524)
T ss_pred             HhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchh
Confidence             334444566788889999999999889988888899999999888876 5666788888888888744 5677778889


Q ss_pred             CChHHHHHhhCC--CCHHHHHHHHHHHHHh----hcCCcchhhhHhc--CChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940          164 GAVRPLIEMLQS--PDVQLREMSAFALGRL----AQDMHNQAGIAHN--GGLVPLLKLLDSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       164 g~v~~L~~ll~~--~~~~v~~~a~~~L~~l----~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~  235 (548)
                      |+++.+...+..  .+|--+..++...+.+    +...-...++.+.  -+++..++++...++..+..|..+++.+.++
T Consensus       255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn  334 (524)
T KOG4413|consen  255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN  334 (524)
T ss_pred             hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence            999999999864  4444444344333333    3221111111111  1344456677788899999999999999988


Q ss_pred             CcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCC---Cc
Q 008940          236 EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP---DD  311 (548)
Q Consensus       236 ~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~---~~  311 (548)
                      .+....+...|-                               ....+++.-..+ ....-+..+.++|.+++..   +.
T Consensus       335 teGadlllkTgp-------------------------------paaehllarafdqnahakqeaaihaLaaIagelrlkp  383 (524)
T KOG4413|consen  335 TEGADLLLKTGP-------------------------------PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKP  383 (524)
T ss_pred             cchhHHHhccCC-------------------------------hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCCh
Confidence            887766655441                               122233322222 2333456667777777642   22


Q ss_pred             ccee------------------eecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcccccc
Q 008940          312 QRTI------------------FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSS  356 (548)
Q Consensus       312 ~~~~------------------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  356 (548)
                      .|..                  -.+..-...+...++.+.++++.++.+.+..++..+|.+..
T Consensus       384 eqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalke  446 (524)
T KOG4413|consen  384 EQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKE  446 (524)
T ss_pred             hhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHH
Confidence            2210                  01113356667778888999999999999999998887643

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=1.6e-05  Score=74.94  Aligned_cols=245  Identities=17%  Similarity=0.169  Sum_probs=187.4

Q ss_pred             cchhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccC-----cc----hhh
Q 008940            4 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-----DE----NKN   74 (548)
Q Consensus         4 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~----~~~   74 (548)
                      ..|+.+.--+....+-+..++ .-|+....+.+.++++.|+.+|.+.|.++....+..|..++..+     .+    -..
T Consensus        92 eKFmeSE~dLhd~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLid  170 (536)
T KOG2734|consen   92 EKFMESEVDLHDIIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLID  170 (536)
T ss_pred             HHHHHhhccHHHHHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHH
Confidence            345666666777888888888 67888888999999999999999999999999999999998631     22    234


Q ss_pred             HhhhcCChHHHHHHhccCCh------HHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC--ChHHHHHHHHHH
Q 008940           75 QIVECNALPTLILMLRSEDS------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLL  146 (548)
Q Consensus        75 ~~~~~g~i~~Lv~ll~~~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L  146 (548)
                      .+++.++++.|++.++.-++      .-...+..++-|+....+++...+++.|.+..|+.-+...  -......|..+|
T Consensus       171 aLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiL  250 (536)
T KOG2734|consen  171 ALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEIL  250 (536)
T ss_pred             HHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHH
Confidence            66777899999988873333      3355677788899888888889999999888887755443  245677888888


Q ss_pred             HHhhcCCchhHHHHHhcCChHHHHHhhCC---C------CHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC
Q 008940          147 GQFAATDSDCKVHIVQRGAVRPLIEMLQS---P------DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK  217 (548)
Q Consensus       147 ~~l~~~~~~~~~~~~~~g~v~~L~~ll~~---~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~  217 (548)
                      .-+...+..++..+....++..++.-+.-   .      ..+..++...+|+.+...+.++..+....|+....-+++. 
T Consensus       251 aillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-  329 (536)
T KOG2734|consen  251 AILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-  329 (536)
T ss_pred             HHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-
Confidence            88887777788888888888888887741   1      3467788888999999999999999998888765555555 


Q ss_pred             ChhHHHHHHHHHHhcccCC---cchHHHHHhcCccc
Q 008940          218 NGSLQHNAAFALYGLADNE---DNVADFIRVGGVQK  250 (548)
Q Consensus       218 ~~~v~~~a~~~L~~l~~~~---~~~~~~~~~g~i~~  250 (548)
                      ....+..++.+|-....++   +++..+++.+|+..
T Consensus       330 Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrt  365 (536)
T KOG2734|consen  330 KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRT  365 (536)
T ss_pred             HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHH
Confidence            4455677888888886654   46667776665443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=2.3e-05  Score=79.14  Aligned_cols=287  Identities=15%  Similarity=0.188  Sum_probs=197.8

Q ss_pred             CchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc--CChHHHHHHHHHHHHhhcCCh---
Q 008940           39 GIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP---  112 (548)
Q Consensus        39 ~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~~v~~~a~~~L~~l~~~~~---  112 (548)
                      .|+.|+.-+.+. -.+-|+.|+++|..+++   ..|..+... ++++|++.|..  .|+++...++.++.++....+   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            355566555443 37789999999999985   355555554 78999999974  388999999999999977652   


Q ss_pred             ---h----------HHHHHH-hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc-hhHHHH-HhcCChHHHHHhhCCC
Q 008940          113 ---N----------IKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHI-VQRGAVRPLIEMLQSP  176 (548)
Q Consensus       113 ---~----------~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~-~~~g~v~~L~~ll~~~  176 (548)
                         +          +.+.++ ..+.|..++..+...+-.||..++..+.++.+..+ +.+..+ ...-++..++.+|.+.
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds  178 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS  178 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence               1          123333 35889999999999999999999999999876654 344444 4466899999999999


Q ss_pred             CHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCC----ChhHHHHHHHHHHhccc-CCcchHHHHHhcCccc
Q 008940          177 DVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSK----NGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQK  250 (548)
Q Consensus       177 ~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~  250 (548)
                      .+.+|..++-.|..+..+... +..+.-.+++..|+.++...    ..-|...++..|-||-. +..++.-|.+.+.||.
T Consensus       179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r  258 (970)
T KOG0946|consen  179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR  258 (970)
T ss_pred             hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence            999999999999999988766 55566678888999999753    24678889999999976 5667777777777766


Q ss_pred             ccccch--hhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-------ccceeeecCCc
Q 008940          251 LQDGEF--IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-------DQRTIFIDGGG  321 (548)
Q Consensus       251 L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-------~~~~~~~~~~~  321 (548)
                      |.+...  ..... .....+..+++.                     ...++.++..++.+.       .+++.+...++
T Consensus       259 L~klL~~f~~~d~-Ev~~W~~Qrv~N---------------------v~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~l  316 (970)
T KOG0946|consen  259 LLKLLSVFEFGDG-EVFGWSTQRVQN---------------------VIEALQIVRSLVSPGNTSSITHQNQKALVSSHL  316 (970)
T ss_pred             HHhhcCcccccCc-ccccccHHHHHH---------------------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcch
Confidence            643111  10000 000000001100                     012233333333321       13456777888


Q ss_pred             hHHHHHhhcCCC--CccchhhHHHHHHHhhhc
Q 008940          322 LELLLGLLGSTN--PKQQLDGAVALFKLANKA  351 (548)
Q Consensus       322 i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~  351 (548)
                      +..|+.++.++.  .+|+..+..++.+..++.
T Consensus       317 l~~Lc~il~~~~vp~dIltesiitvAevVRgn  348 (970)
T KOG0946|consen  317 LDVLCTILMHPGVPADILTESIITVAEVVRGN  348 (970)
T ss_pred             HHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence            999999888763  455777888888887765

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.52  E-value=3.5e-06  Score=87.27  Aligned_cols=223  Identities=15%  Similarity=0.126  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-
Q 008940           13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-   91 (548)
Q Consensus        13 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-   91 (548)
                      |-+|+..|...-.-.+=....-..-|+.|..+++|+++-.+++-.-+-+-..+..-++..+..+++.++-..++..|.. 
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~  566 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS  566 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence            4467777776665455555555667999999999999999888777777677666578888899999899899988875 


Q ss_pred             C--ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC-ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           92 E--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        92 ~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                      +  +++-|..|+.+|..++.+..--++...+.+.+...+..+.++ .+-.+.+++-+|+.|-.+.+..+-.-.+.+..+.
T Consensus       567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek  646 (1387)
T KOG1517|consen  567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK  646 (1387)
T ss_pred             CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence            2  468999999999999988777788888889999999999885 5778999999999999998888888888899999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCC----cchhhhH------------hcCCh----HHHHHhhcCCChhHHHHHHHH
Q 008940          169 LIEMLQSPDVQLREMSAFALGRLAQDM----HNQAGIA------------HNGGL----VPLLKLLDSKNGSLQHNAAFA  228 (548)
Q Consensus       169 L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~------------~~~~l----~~L~~ll~~~~~~v~~~a~~~  228 (548)
                      |..+|.++-++||..|..||+.+..+.    +.+....            -+..+    ..++.+++.+.+-++...+-+
T Consensus       647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~  726 (1387)
T KOG1517|consen  647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA  726 (1387)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence            999999999999999999999998752    2221111            11222    246667778888888888888


Q ss_pred             HHhcccC
Q 008940          229 LYGLADN  235 (548)
Q Consensus       229 L~~l~~~  235 (548)
                      |..+...
T Consensus       727 ls~~~~g  733 (1387)
T KOG1517|consen  727 LSHFVVG  733 (1387)
T ss_pred             HHHHHHh
Confidence            8888654

>TIGR02270 conserved hypothetical protein

Probab=98.49  E-value=2.7e-05  Score=76.39  Aligned_cols=240  Identities=17%  Similarity=0.046  Sum_probs=168.0

Q ss_pred             CchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           39 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        39 ~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      +++.++..|. .++.+++..++.++.....  +         ..+..|+..|.+.++.++..++..|+.+-.        
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------
Confidence            4667777774 5667777766655543321  1         138899999999999999999999987721        


Q ss_pred             HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940          118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                         .+..+.|..++.+.++.++..++.++...-            ....+.+..+|+++++.++..|+.+|+.+...   
T Consensus       116 ---~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---  177 (410)
T TIGR02270       116 ---RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR---  177 (410)
T ss_pred             ---hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence               235778999999999999988887766631            12456888999999999999999999998532   


Q ss_pred             hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHH---hcCcccccccchhhhhhhHHHHHHHHHHHH
Q 008940          198 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR---VGGVQKLQDGEFIVQATKDCVAKTLKRLEE  274 (548)
Q Consensus       198 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~  274 (548)
                             ..++.|...+.+.++.|+..|+.++..+.. +.....+..   ..+.+.              .......+..
T Consensus       178 -------~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~--------------~~~l~~~lal  235 (410)
T TIGR02270       178 -------LSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPH--------------RQRLLVLLAV  235 (410)
T ss_pred             -------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccH--------------HHHHHHHHHh
Confidence                   456678888999999999999999988854 222222211   011100              0000011111


Q ss_pred             hhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          275 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       275 ~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ......++.|..+++.+.  ++..++.+++.+-          ....++.|+..+.+.  .++..|..++..+.--.
T Consensus       236 ~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~  298 (410)
T TIGR02270       236 AGGPDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREP--PWARLAGEAFSLITGMD  298 (410)
T ss_pred             CCchhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence            123357778888887754  8999999998653          345789999988754  39999999999987643

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.42  E-value=3.1e-07  Score=92.31  Aligned_cols=94  Identities=23%  Similarity=0.353  Sum_probs=70.0

Q ss_pred             CCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCC------------ceecCCCCHHHHHHHHHHHhcCcc
Q 008940          377 NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR------------DIEIPNIRWEVFELMMRFIYTGSV  444 (548)
Q Consensus       377 ~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~------------~i~l~~~~~~~~~~~l~~~Yt~~~  444 (548)
                      ...+.||+|.+|+..|+|||.||+++|+|||.+|...-+.+..+            .|.+++++|..|+.+|+||||+..
T Consensus       555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~  634 (1267)
T KOG0783|consen  555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL  634 (1267)
T ss_pred             ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence            35678999999999999999999999999999997554333222            455778999999999999999843


Q ss_pred             c--------------cchHh-------HHHHHHHHHHhChHhHHHHH
Q 008940          445 D--------------VTLDI-------AQDLLRAADQYLLEGLKRLC  470 (548)
Q Consensus       445 ~--------------~~~~~-------~~~ll~~a~~~~~~~l~~~c  470 (548)
                      -              +-.+|       ...+.-.+.+|++.+|....
T Consensus       635 ~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~  681 (1267)
T KOG0783|consen  635 LSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS  681 (1267)
T ss_pred             cCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence            1              11122       22366677777777766554

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=1.4e-05  Score=80.43  Aligned_cols=299  Identities=14%  Similarity=0.093  Sum_probs=186.8

Q ss_pred             hhHHHHHHHHHHHHHhh-hChhhHHHHHhcCCchHHHHhhccCC-HHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHH
Q 008940            9 VNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFK-NDENKNQIVECNALPTL   85 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L   85 (548)
                      .|.....|+.++..++. +=|.+..    .+.+..|+.....+. ..+++.++.+|+.+|.+ +++ ...-....++..+
T Consensus       103 ep~~~s~Aaq~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaI  177 (859)
T KOG1241|consen  103 EPRRPSSAAQCVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAI  177 (859)
T ss_pred             CCCccchHHHHHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHH
Confidence            34444556666666653 1122211    123344444444443 45899999999999974 233 1111122355566


Q ss_pred             HHHhc--cCChHHHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940           86 ILMLR--SEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ  162 (548)
Q Consensus        86 v~ll~--~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  162 (548)
                      +.-.+  .++..+|..|+.+|.+--.... ......-..-++...++.-++++.+++..|..+|..+.+-.-+....-..
T Consensus       178 v~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~  257 (859)
T KOG1241|consen  178 VQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYME  257 (859)
T ss_pred             HhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65554  4578999999999987643211 11122222335666677778889999999999999998665444444455


Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch----hhhHh---------------cCChHHHHHhhcCC------
Q 008940          163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ----AGIAH---------------NGGLVPLLKLLDSK------  217 (548)
Q Consensus       163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~---------------~~~l~~L~~ll~~~------  217 (548)
                      ......-+..++++++++...+...=+++|...-.-    ....+               .+.+|.|+++|.+.      
T Consensus       258 ~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~  337 (859)
T KOG1241|consen  258 QALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDD  337 (859)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccc
Confidence            556666677788999999999988888888443210    11111               13345555555431      


Q ss_pred             -ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHH----hhh
Q 008940          218 -NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR----VAE  292 (548)
Q Consensus       218 -~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~----~~~  292 (548)
                       +......|..+|.-++                                        ......++++.+.+.+    +++
T Consensus       338 DdWnp~kAAg~CL~l~A----------------------------------------~~~~D~Iv~~Vl~Fiee~i~~pd  377 (859)
T KOG1241|consen  338 DDWNPAKAAGVCLMLFA----------------------------------------QCVGDDIVPHVLPFIEENIQNPD  377 (859)
T ss_pred             ccCcHHHHHHHHHHHHH----------------------------------------HHhcccchhhhHHHHHHhcCCcc
Confidence             1223333333333333                                        2233346666667666    367


Q ss_pred             hhhhhhHHHHhhhccCCCc-cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          293 KGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       293 ~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      ..-|..|+.+++.+-.+++ .+-.-+..+++|.++.++.++.-.++..++|+++++++...
T Consensus       378 wr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~  438 (859)
T KOG1241|consen  378 WRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP  438 (859)
T ss_pred             hhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence            8888999999999988776 44444556899999999998888889999999999999754

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=98.36  E-value=3.5e-06  Score=73.98  Aligned_cols=94  Identities=29%  Similarity=0.445  Sum_probs=80.4

Q ss_pred             EEEEeCCeEEEchHHHHhcccHHHHhhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCccccc--hHhHHHHHHHH
Q 008940          383 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVT--LDIAQDLLRAA  458 (548)
Q Consensus       383 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~--~~~~~~ll~~a  458 (548)
                      +.+.+||..|..++.-|.-...||+.|+..++.  ...++.|-++ =+|.-|+.+|+||-.|.+.++  ...+.+|+.=|
T Consensus         7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA   85 (230)
T KOG2716|consen    7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLPESEKELKELLREA   85 (230)
T ss_pred             EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence            557889999999999999999999999998764  2334567775 499999999999999988776  55688999999


Q ss_pred             HHhChHhHHHHHHHHHHhc
Q 008940          459 DQYLLEGLKRLCEYTIAQD  477 (548)
Q Consensus       459 ~~~~~~~l~~~c~~~l~~~  477 (548)
                      .+|.++.|.+.|...+...
T Consensus        86 ~fYlL~~Lv~~C~~~i~~~  104 (230)
T KOG2716|consen   86 EFYLLDGLVELCQSAIARL  104 (230)
T ss_pred             HHhhHHHHHHHHHHHhhhc
Confidence            9999999999999987653

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=8.7e-06  Score=80.52  Aligned_cols=331  Identities=16%  Similarity=0.102  Sum_probs=203.3

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      +..++.+|+....+|..+...... .   ...-..+.+.++++.++..-+..+...+..+..  ......+.+.+++..+
T Consensus       106 ~tps~~~q~~~~~~l~~~~~~~~~-~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~--g~~i~~~~~~~~l~~l  179 (569)
T KOG1242|consen  106 DTPSKSVQRAVSTCLPPLVVLSKG-L---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVN--GLGIESLKEFGFLDNL  179 (569)
T ss_pred             CCCcHHHHHHHHHHhhhHHHHhhc-c---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHc--CcHHhhhhhhhHHHHH
Confidence            445667777777777766531111 0   111234567788888888889999999998885  4455666677888899


Q ss_pred             HHHhccCChHHHHH-HHHHHHHhhcCChhHHHHHHhcCC---hHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH
Q 008940           86 ILMLRSEDSAIHYE-AVGVIGNLVHSSPNIKKEVLAAGA---LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV  161 (548)
Q Consensus        86 v~ll~~~~~~v~~~-a~~~L~~l~~~~~~~~~~~~~~g~---i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  161 (548)
                      .....+.+...++. +..+.......-.    ...+.+.   +|.++....+..+.++..+..+...+.+.-+....   
T Consensus       180 ~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV---  252 (569)
T KOG1242|consen  180 SKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV---  252 (569)
T ss_pred             HHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh---
Confidence            99888776555543 3222222211111    1122333   44445555566788888877776666433222211   


Q ss_pred             hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHH
Q 008940          162 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD  241 (548)
Q Consensus       162 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  241 (548)
                       .-+++.++.-+.......+..++..++.++...+.+........+|.+.+.|.+.++++++.+..+|.+++.--++.. 
T Consensus       253 -K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-  330 (569)
T KOG1242|consen  253 -KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-  330 (569)
T ss_pred             -hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-
Confidence             123444544444456778899999999999888888777788899999999999999999999999999986444432 


Q ss_pred             HHHhcCcccccccchhhh-hhhHHHHHHH-HHHHHhhhhhhhHHHHHHHHh----hhhhhhhhHHHHhhhccCCCcccee
Q 008940          242 FIRVGGVQKLQDGEFIVQ-ATKDCVAKTL-KRLEEKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDDQRTI  315 (548)
Q Consensus       242 ~~~~g~i~~L~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~L~~ll~~----~~~~~~~~a~~aL~~l~~~~~~~~~  315 (548)
                      +.  ..+|.|++...... ....|...-. ..+-..++...+..++.+++.    .+...+..++.++.|++.--+..+.
T Consensus       331 I~--~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~  408 (569)
T KOG1242|consen  331 IQ--KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD  408 (569)
T ss_pred             HH--HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH
Confidence            11  12233333222211 2222221110 111112334455555555554    5778889999999999864322211


Q ss_pred             e--ecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhccc
Q 008940          316 F--IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT  353 (548)
Q Consensus       316 ~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  353 (548)
                      +  .-...+|-|-..+.+..|++|.-++.+|+.+.+....
T Consensus       409 lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  409 LAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             HhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence            1  1123455556666677899999999999998876543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.33  E-value=0.00022  Score=69.33  Aligned_cols=289  Identities=14%  Similarity=0.123  Sum_probs=192.2

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      .+++..+.+.+..+. .++..-..+.+.++--.++.-|..+  +..-|+.|++.++.+... +..... ...|++..++.
T Consensus        39 ~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~-~~~~~~-~~~~vvralva  115 (371)
T PF14664_consen   39 KEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI-KKGPKE-IPRGVVRALVA  115 (371)
T ss_pred             HHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh-cCCccc-CCHHHHHHHHH
Confidence            688999999999998 5677777788788777777777654  466888999999998863 222222 35578999999


Q ss_pred             HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940           88 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR  167 (548)
Q Consensus        88 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  167 (548)
                      +..++++..+..++.+|+.++-.+|+   .+...|++..+.+.+.++..++....+.++..+. +.|..|..+...--++
T Consensus       116 iae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~  191 (371)
T PF14664_consen  116 IAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLE  191 (371)
T ss_pred             HHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHH
Confidence            99999999999999999999988775   5778999999999998876668888888888886 4466666444433344


Q ss_pred             HHHHhhCCC-------CH--HHHHHHHHHHHHhhcCCcchhhhHh--cCChHHHHHhhcCCChhHHHHHHHHHHhccc--
Q 008940          168 PLIEMLQSP-------DV--QLREMSAFALGRLAQDMHNQAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--  234 (548)
Q Consensus       168 ~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--  234 (548)
                      .++.-+.+.       +.  +....+..++..+-++=++--.+..  ..++..|+..|..++++++......+..+-+  
T Consensus       192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik  271 (371)
T PF14664_consen  192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK  271 (371)
T ss_pred             HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence            444443322       22  3445666677766655444322222  2478889999999999999999998888754  


Q ss_pred             CCcchHHHHHh------cCc---ccccccchh-----hhhhhHHHHHHHH-----HHHHhhhhhhhHHHHHHHHhh-hhh
Q 008940          235 NEDNVADFIRV------GGV---QKLQDGEFI-----VQATKDCVAKTLK-----RLEEKIHGRVLNHLLYLMRVA-EKG  294 (548)
Q Consensus       235 ~~~~~~~~~~~------g~i---~~L~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~~ll~~~-~~~  294 (548)
                      .+.+...+...      |-.   ..+.. .|.     ......-...-.+     -+....+.|.++.|+.+..+. ++.
T Consensus       272 ~p~w~~~~~~~~~~~~~~~~~~~~~l~~-~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~  350 (371)
T PF14664_consen  272 PPSWTESFLAGRRLTTYGRFQDTWNLSS-GFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSS  350 (371)
T ss_pred             CCCcccchhhcccccccccccchhhhcc-cccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCch
Confidence            33333332211      111   00100 000     0000000001111     123447889999999999985 788


Q ss_pred             hhhhHHHHhhhc
Q 008940          295 VQRRVALALAHL  306 (548)
Q Consensus       295 ~~~~a~~aL~~l  306 (548)
                      +...|...|+.+
T Consensus       351 l~~KAtlLL~el  362 (371)
T PF14664_consen  351 LSRKATLLLGEL  362 (371)
T ss_pred             HHHHHHHHHHHH
Confidence            888887777654

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.28  E-value=6.7e-05  Score=72.83  Aligned_cols=192  Identities=15%  Similarity=0.147  Sum_probs=145.9

Q ss_pred             HHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC--Ch
Q 008940           17 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DS   94 (548)
Q Consensus        17 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~   94 (548)
                      +..|..+-+.+|..+..+.-....+.+..++-+++.++|..+.++++.+.. +++....+.+.++--.++..|..+  +.
T Consensus         4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~   82 (371)
T PF14664_consen    4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKND   82 (371)
T ss_pred             HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCCh
Confidence            455677777888777766655556666655555569999999999999997 688888888888766677777643  45


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC
Q 008940           95 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ  174 (548)
Q Consensus        95 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~  174 (548)
                      .-|++|++.++.+.....+.+  -...|++..++.+..+.+...+..|..+|+.++..+|+   .+...|++..++..+.
T Consensus        83 ~ER~QALkliR~~l~~~~~~~--~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~  157 (371)
T PF14664_consen   83 VEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALI  157 (371)
T ss_pred             HHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHH
Confidence            668899999988875522211  12457788999999999999999999999999966554   5778999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh
Q 008940          175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL  214 (548)
Q Consensus       175 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll  214 (548)
                      ++..++.+..+.++..+...+..|..+...--+..++.-+
T Consensus       158 d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apf  197 (371)
T PF14664_consen  158 DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPF  197 (371)
T ss_pred             hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhh
Confidence            8766788999999999998888777665544455544333

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.00013  Score=74.15  Aligned_cols=293  Identities=15%  Similarity=0.179  Sum_probs=144.5

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc---------------CChHHHHHHHHHHHHh
Q 008940           43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVIGNL  107 (548)
Q Consensus        43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~---------------~~~~v~~~a~~~L~~l  107 (548)
                      ..++|.+.++-|...++..+..++..+++....+.+  .++.|+..|+.               +++-++...+++|+-|
T Consensus       184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL  261 (866)
T KOG1062|consen  184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL  261 (866)
T ss_pred             HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence            333444444444444444444444433333333333  44555555541               2466777888888877


Q ss_pred             hcCChhHHHHHHhc-------------CChHHHH----Hhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhc------
Q 008940          108 VHSSPNIKKEVLAA-------------GALQPVI----GLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQR------  163 (548)
Q Consensus       108 ~~~~~~~~~~~~~~-------------g~i~~L~----~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------  163 (548)
                      -.++++..+.|.+-             -+=..|-    .++. .++..++..|+.+|+.+....+.+.+-+.-.      
T Consensus       262 Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V  341 (866)
T KOG1062|consen  262 GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV  341 (866)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence            66655544433210             0000111    1111 1345566666666666654433332211100      


Q ss_pred             ----C----ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940          164 ----G----AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       164 ----g----~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~  235 (548)
                          .    -=..++++|+++|..++..|+..+..|......+.      .+..|+.+|.+.+++.+...+.-+..++..
T Consensus       342 ~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEk  415 (866)
T KOG1062|consen  342 QQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRV------MVKELLEFLESSDEDFKADIASKIAELAEK  415 (866)
T ss_pred             cCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence                0    11357777888888888888888887765544332      245688888888888888877777777642


Q ss_pred             --CcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhh-------hhhHHHHHH------HHhhhhhhhhhHH
Q 008940          236 --EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG-------RVLNHLLYL------MRVAEKGVQRRVA  300 (548)
Q Consensus       236 --~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~L~~l------l~~~~~~~~~~a~  300 (548)
                        ++.+..+-..--+-... +.|.-       .+...++-.++..       ..+.+|...      +.-+.+....-+.
T Consensus       416 faP~k~W~idtml~Vl~~a-G~~V~-------~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~  487 (866)
T KOG1062|consen  416 FAPDKRWHIDTMLKVLKTA-GDFVN-------DDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVAS  487 (866)
T ss_pred             cCCcchhHHHHHHHHHHhc-ccccc-------hhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence              22222111000000000 00000       0011111111111       112222221      1224455577789


Q ss_pred             HHhhhcc----CC--CccceeeecCCchHHHHHhhcC--CCCccchhhHHHHHHHhhhc
Q 008940          301 LALAHLC----SP--DDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       301 ~aL~~l~----~~--~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~  351 (548)
                      |+|+...    .+  .+.-...-+...+..|..++.+  .+..++..|..+|.+|...-
T Consensus       488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~  546 (866)
T KOG1062|consen  488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF  546 (866)
T ss_pred             HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence            9998654    11  1222334556778888888864  44566888999999987653

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=0.00054  Score=71.66  Aligned_cols=278  Identities=19%  Similarity=0.257  Sum_probs=176.4

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHh----cCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRM----EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      +-..-++.+|.|+...+|+....+..    .|..+.+...+.+ .++.++..|+..+..+.. +.+....+...|.+..|
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence            34567899999999888866544332    2667777777764 678999999999999987 79999999999999899


Q ss_pred             HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcC------------
Q 008940           86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAAT------------  152 (548)
Q Consensus        86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~------------  152 (548)
                      +.+|.+ -+..|+.++.+|..|++. +++.....+.|++..+..++. +..+..+..++..++.+..+            
T Consensus      1819 L~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred             HHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence            998875 577899999999999866 555566666777666665554 44466777777777766511            


Q ss_pred             -------------Cch----------------------------------------------------------------
Q 008940          153 -------------DSD----------------------------------------------------------------  155 (548)
Q Consensus       153 -------------~~~----------------------------------------------------------------  155 (548)
                                   +|+                                                                
T Consensus      1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred             HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence                         000                                                                


Q ss_pred             ------hHHHHHh------------cCChHHHHHhhCCCCH--HHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhh
Q 008940          156 ------CKVHIVQ------------RGAVRPLIEMLQSPDV--QLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLL  214 (548)
Q Consensus       156 ------~~~~~~~------------~g~v~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll  214 (548)
                            .|..+.+            .|.++.+.+++...++  +.......++..|....++ ...+-.-|.+|.++..+
T Consensus      1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred             ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence                  1111111            1223333344433222  1222222333333333322 34455568888888888


Q ss_pred             cCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHH---------HHHHhhhhhhhHHHH
Q 008940          215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK---------RLEEKIHGRVLNHLL  285 (548)
Q Consensus       215 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~L~  285 (548)
                      ...+..+-..++.+|-.|+.+.-+..++.....+..+++.............++++         -.....+.|.++.|+
T Consensus      2057 ~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL 2136 (2235)
T KOG1789|consen 2057 CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLL 2136 (2235)
T ss_pred             HhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHH
Confidence            77776677899999999999999999888766555544321111000001122222         223445667899999


Q ss_pred             HHHHhh
Q 008940          286 YLMRVA  291 (548)
Q Consensus       286 ~ll~~~  291 (548)
                      ++|+..
T Consensus      2137 ~LLd~~ 2142 (2235)
T KOG1789|consen 2137 QLLDSS 2142 (2235)
T ss_pred             HHhccc
Confidence            988763

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=1.9e-05  Score=76.29  Aligned_cols=290  Identities=14%  Similarity=0.159  Sum_probs=192.9

Q ss_pred             HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCCh
Q 008940           15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS   94 (548)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~   94 (548)
                      .++.+|..++++-.-.|.-+.+..+.+.|+++|+.++..+..-+...+.+..-.-..-+..+...|++..|+.++.+.|.
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            44556667777666777778888899999999999888888888888888886555667788899999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCChhH-HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchh---HHHHHhcC----Ch
Q 008940           95 AIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---KVHIVQRG----AV  166 (548)
Q Consensus        95 ~v~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~g----~v  166 (548)
                      .+|....|.++++..++.+. +-.....-++..++.+..++...++..+...|.|+..+...+   ++...+.-    ..
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf  567 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF  567 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence            99999999999998766543 335556678999999999999999999999999998754432   22222211    34


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHh--cCChHHHHHhhcC---------C--ChhHHHHHHHHHHhcc
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH--NGGLVPLLKLLDS---------K--NGSLQHNAAFALYGLA  233 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~ll~~---------~--~~~v~~~a~~~L~~l~  233 (548)
                      ..|++.++..+|-..+..+..|.+++..++..+.++.  ...+..+...|..         +  ...+.........++.
T Consensus       568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~  647 (743)
T COG5369         568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS  647 (743)
T ss_pred             HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence            4566777777776666778888888877776554432  2233333333321         1  1122222223333443


Q ss_pred             cCCcchHHHHHhcCcccccccc---------h---------hhhhhhHHH---HHHHHHHHHhhhhhhhHHHHHHHHhhh
Q 008940          234 DNEDNVADFIRVGGVQKLQDGE---------F---------IVQATKDCV---AKTLKRLEEKIHGRVLNHLLYLMRVAE  292 (548)
Q Consensus       234 ~~~~~~~~~~~~g~i~~L~~~~---------~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~ll~~~~  292 (548)
                      .+.+.-.+.....  |.+-...         .         .......|.   ....++++.+.+.|+-+-+..+..+++
T Consensus       648 e~~d~f~r~~~~~--p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S  725 (743)
T COG5369         648 ENSDKFKRLVLTT--PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS  725 (743)
T ss_pred             ccccccccceecC--CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence            3222111111000  1110000         0         011111221   456788888888888888888878889


Q ss_pred             hhhhhhHHHHhhhc
Q 008940          293 KGVQRRVALALAHL  306 (548)
Q Consensus       293 ~~~~~~a~~aL~~l  306 (548)
                      +.+|+.+-.+|.++
T Consensus       726 l~vrek~~taL~~l  739 (743)
T COG5369         726 LIVREKIGTALENL  739 (743)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998888876

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.16  E-value=1.5e-05  Score=62.60  Aligned_cols=118  Identities=19%  Similarity=0.206  Sum_probs=101.9

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      .+.+.+++....|.+.++ +|.+...+.+.+.+...+..|..++..+.+.++..|.|+|- ++.+++.+.+.++++.++.
T Consensus        29 t~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~  106 (173)
T KOG4646|consen   29 TNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIF  106 (173)
T ss_pred             ccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEe
Confidence            345788899999999995 78888889999999999999999999999999999999997 7999999999999999999


Q ss_pred             HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHH
Q 008940           88 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  127 (548)
Q Consensus        88 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  127 (548)
                      .+.++...+...++.++..++..+..-++.+....++..+
T Consensus       107 ~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v  146 (173)
T KOG4646|consen  107 VLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTV  146 (173)
T ss_pred             ecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence            9999999999999999999987766666665544333333

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.11  E-value=5.9e-05  Score=75.59  Aligned_cols=280  Identities=19%  Similarity=0.170  Sum_probs=188.0

Q ss_pred             HHHHHHHHhhhChhhHHHHHhcCCchHHHHhh----------ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940           16 AADAITNLAHENSSIKTRVRMEGGIPPLVELL----------EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus        16 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      |+.+|.-++ .++.....+....++..|.++-          ..+++.+...|+++|.|+...++..+..+.+.|+.+.+
T Consensus         1 ~L~~LRiLs-Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    1 CLETLRILS-RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             CHHHHHHHc-cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            355666777 4565666666666777777655          34568999999999999999899999999999999999


Q ss_pred             HHHhccC-----ChHHHHHHHHHHHHhhcCChhHHHHHHhc-CChHHHHHhhhc---------C--------ChHHHHHH
Q 008940           86 ILMLRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS---------C--------CSESQREA  142 (548)
Q Consensus        86 v~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~---------~--------~~~~~~~a  142 (548)
                      +..|+..     +.++.-...++|.-++......+..+++. +++..+...+..         .        +......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999865     78899999999988888777777666654 777777776642         0        22345666


Q ss_pred             HHHHHHhhcCCchhHHHHHhcCChHHHHHhhC-------C--CCHHHHHHHHHHHHHhhcCCcc--------hh----hh
Q 008940          143 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-------S--PDVQLREMSAFALGRLAQDMHN--------QA----GI  201 (548)
Q Consensus       143 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~-------~--~~~~v~~~a~~~L~~l~~~~~~--------~~----~~  201 (548)
                      +..+-|+..+.+.... -...+.++.++.++.       .  +......++.-+|.|+-.....        ..    ..
T Consensus       160 LKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~  238 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG  238 (446)
T ss_pred             HHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence            7788888765544332 012233343333322       1  2235677888888887321110        00    01


Q ss_pred             HhcCChHHHHHhhcC----CC----hhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHH
Q 008940          202 AHNGGLVPLLKLLDS----KN----GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE  273 (548)
Q Consensus       202 ~~~~~l~~L~~ll~~----~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~  273 (548)
                      .....+..|+.+|+.    ..    .+.....+.+|.+++..........+..++|.+.+-.....              
T Consensus       239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e--------------  304 (446)
T PF10165_consen  239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPE--------------  304 (446)
T ss_pred             CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCC--------------
Confidence            122235556666642    11    24556677888888888777788888888888755322221              


Q ss_pred             HhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc
Q 008940          274 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR  313 (548)
Q Consensus       274 ~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~  313 (548)
                        .....-.+|+.+|.+..+.++..++..|..+|..+..+
T Consensus       305 --~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~  342 (446)
T PF10165_consen  305 --KGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASR  342 (446)
T ss_pred             --CCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHH
Confidence              12236789999999988999999999999998655443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=8e-05  Score=75.62  Aligned_cols=319  Identities=16%  Similarity=0.164  Sum_probs=186.8

Q ss_pred             chhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940            5 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT   84 (548)
Q Consensus         5 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   84 (548)
                      +...+|.++..|++.+..+--  +..-.     ....+|.+.+++.++.+|..++..+.++-.   ...+.....|.++.
T Consensus        95 ~~d~np~iR~lAlrtm~~l~v--~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~  164 (734)
T KOG1061|consen   95 CEDPNPLIRALALRTMGCLRV--DKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDA  164 (734)
T ss_pred             CCCCCHHHHHHHhhceeeEee--hHHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHH
Confidence            445566777776666655541  22222     245688899999999999999988888864   45566777899999


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcC
Q 008940           85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG  164 (548)
Q Consensus        85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g  164 (548)
                      |-.++.++++.+...|+.+|..+....++.-........+..++..+...+.--+   +.+|.+++...+......  ..
T Consensus       165 L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea--~~  239 (734)
T KOG1061|consen  165 LKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREA--ED  239 (734)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhH--HH
Confidence            9999999999999999999999976544310000011122233333322222222   334444543333222111  23


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHH
Q 008940          165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR  244 (548)
Q Consensus       165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  244 (548)
                      .++.+...+++.++.+...+...+.++...............-++++.++.... +++.-++.-+.-+-...+.   +..
T Consensus       240 i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~---~~~  315 (734)
T KOG1061|consen  240 ICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE---ILK  315 (734)
T ss_pred             HHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH---HHH
Confidence            667788888888888888888888888755444222333344556777776665 6665555444333221111   100


Q ss_pred             hcCcccc---cccchhhhhhhHHHH--HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecC
Q 008940          245 VGGVQKL---QDGEFIVQATKDCVA--KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG  319 (548)
Q Consensus       245 ~g~i~~L---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~  319 (548)
                      ...--..   .+....-....+|..  ..-.++++     ++..+...-..-|.+....+.+|+++++..-+..     .
T Consensus       316 ~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q-----vl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~  385 (734)
T KOG1061|consen  316 VEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ-----VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----N  385 (734)
T ss_pred             hHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH-----HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----h
Confidence            0000000   000000001111111  01111111     4444455555568888899999999998754433     5


Q ss_pred             CchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          320 GGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       320 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      +.+..|++++..+...+...+...+..+.++-.
T Consensus       386 ~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP  418 (734)
T KOG1061|consen  386 DCVSILLELLETKVDYVVQEAIVVIRDILRKYP  418 (734)
T ss_pred             hhHHHHHHHHhhcccceeeehhHHHHhhhhcCC
Confidence            789999999998888888888888888887643

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.0003  Score=71.63  Aligned_cols=68  Identities=18%  Similarity=0.212  Sum_probs=32.8

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCCh
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP  112 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~  112 (548)
                      .|.+.+++++.++.+|.+|+.+...+....|+..+.     ++...-++|.+.+..|...++..+..++..++
T Consensus       144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~  211 (866)
T KOG1062|consen  144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISP  211 (866)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence            344555555555555555555555555443433322     23333444444444444444444444444433

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.07  E-value=2.8e-06  Score=74.38  Aligned_cols=97  Identities=23%  Similarity=0.315  Sum_probs=69.5

Q ss_pred             eEEEchHHHHhcccHHHHhhhcCCCCCCCC---------CceecCC-CCHHHH-HHHHHHHhcCccccc-----------
Q 008940          390 RRFYAHRICLLASSDAFRAMFDGGYREKDA---------RDIEIPN-IRWEVF-ELMMRFIYTGSVDVT-----------  447 (548)
Q Consensus       390 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~~---------~~i~l~~-~~~~~~-~~~l~~~Yt~~~~~~-----------  447 (548)
                      ..++||+.|.++||++||.++.....|+.+         ..|.+++ +=|..| -.+++++||+.++.+           
T Consensus       261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS  340 (401)
T KOG2838|consen  261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS  340 (401)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence            579999999999999999999755443322         2455543 334444 457899999987532           


Q ss_pred             -----------------hHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHH
Q 008940          448 -----------------LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM  486 (548)
Q Consensus       448 -----------------~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~  486 (548)
                                       ...+.+|+++|-+|.+.-|.+.|+..+......++...+
T Consensus       341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~c  396 (401)
T KOG2838|consen  341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNGC  396 (401)
T ss_pred             HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence                             234678888888888888888888888776666655443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.07  E-value=5.7e-06  Score=52.22  Aligned_cols=41  Identities=46%  Similarity=0.583  Sum_probs=38.3

Q ss_pred             ChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhc
Q 008940           27 NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF   67 (548)
Q Consensus        27 ~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~   67 (548)
                      +++++..+.+.|+++.|+++|++++++++..|+++|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47888999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.00031  Score=66.63  Aligned_cols=240  Identities=18%  Similarity=0.198  Sum_probs=178.6

Q ss_pred             HHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCC---------hhHHHHHHhcCChHH
Q 008940           56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS---------PNIKKEVLAAGALQP  126 (548)
Q Consensus        56 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~~~~~g~i~~  126 (548)
                      ...++-+..++. -|+-...+++.++++.|+.+|.+.|.++...++..|..|+..+         ...-+.+++.++++.
T Consensus       102 hd~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  102 HDIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            455677777786 6888889999999999999999999999999999999997432         123466778899999


Q ss_pred             HHHhhhcCChH------HHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCc-c
Q 008940          127 VIGLLSSCCSE------SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMH-N  197 (548)
Q Consensus       127 L~~ll~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~-~  197 (548)
                      |++-+..-+..      -...+...+-|+....+.....+++.|.+.+|+..+...  -..-...|...|.-+..+.. +
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence            99988764433      446667788999988899999999999999999976543  33456777777877776665 5


Q ss_pred             hhhhHhcCChHHHHHhhc----CC-----ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHH
Q 008940          198 QAGIAHNGGLVPLLKLLD----SK-----NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT  268 (548)
Q Consensus       198 ~~~~~~~~~l~~L~~ll~----~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~  268 (548)
                      +..+..-.|+..+++-+.    ++     ..+..++.-.+|+.+...+.++..+....++.                   
T Consensus       261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq-------------------  321 (536)
T KOG2734|consen  261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ-------------------  321 (536)
T ss_pred             hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH-------------------
Confidence            666666788888777663    11     23556677778888888899998887665433                   


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc---cceeeecCCchHHHHHhhc
Q 008940          269 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLG  330 (548)
Q Consensus       269 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~i~~L~~ll~  330 (548)
                                     +..++-......+..+..+|-....+++   ++..+++..|+..++.+..
T Consensus       322 ---------------Lm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  322 ---------------LMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             ---------------HHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence                           2233433355567778888888877655   5567888888888777654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.05  E-value=6.2e-06  Score=52.04  Aligned_cols=41  Identities=39%  Similarity=0.621  Sum_probs=38.4

Q ss_pred             CcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhc
Q 008940           69 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH  109 (548)
Q Consensus        69 ~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~  109 (548)
                      +++++..+.+.|+++.|+++|++++.++++.|+++|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47889999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.04  E-value=0.0018  Score=65.06  Aligned_cols=287  Identities=20%  Similarity=0.183  Sum_probs=171.9

Q ss_pred             HHHHHHHhhccCcchhhHhhhcCChHHHHHHh----------ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHH
Q 008940           58 AAGALRTLAFKNDENKNQIVECNALPTLILML----------RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  127 (548)
Q Consensus        58 a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  127 (548)
                      |+.+|+.+++ ++.+...+....++..|+++-          ..+++.+...|+++|+|+...++..|+.+.+.|+.+.+
T Consensus         1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            3567777787 677888887777788887766          24578999999999999999999999999999999999


Q ss_pred             HHhhhcC-----ChHHHHHHHHHHHHhhcCCchhHHHHHh-cCChHHHHHhhCC-----------------CCHHHHHHH
Q 008940          128 IGLLSSC-----CSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQS-----------------PDVQLREMS  184 (548)
Q Consensus       128 ~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~-----------------~~~~v~~~a  184 (548)
                      +..++..     +.++.-...+.|--++...+..+..+++ .+++..+...+..                 .+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999876     6777777777777676666777766655 4677777776521                 133456778


Q ss_pred             HHHHHHhhcCCcchhhhHhcCChHHHHHhhcC---------CChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccc
Q 008940          185 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS---------KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE  255 (548)
Q Consensus       185 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~  255 (548)
                      ++.+.|+....+....-...+.++.++.++.+         +......+++.+|.|+--.  ....+.....-..   ..
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~---~~  234 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLSPKFQQS---SL  234 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhcccCCcc---cc
Confidence            89999998665543321223344444444321         1245667778888887211  1111110000000   00


Q ss_pred             hhhhhhhHHHHHHHHHHHHhh-------hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc-cceeeec--CCchHHH
Q 008940          256 FIVQATKDCVAKTLKRLEEKI-------HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFID--GGGLELL  325 (548)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~--~~~i~~L  325 (548)
                      +.......+....++-+....       -...+.+++.+|..-.... ..+-..+....-.+. .++...+  ...-..|
T Consensus       235 ~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rL  313 (446)
T PF10165_consen  235 FPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRL  313 (446)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHH
Confidence            000011111111111111111       1235666666666521111 222223333333222 2222222  2345889


Q ss_pred             HHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          326 LGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       326 ~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ++++.+..+.++..++..|..|++..
T Consensus       314 lrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  314 LRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             HHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            99999988999999999999998765

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.00058  Score=68.74  Aligned_cols=209  Identities=22%  Similarity=0.250  Sum_probs=142.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ++.|=++.+|.-.++.+.-.-|+.-   .  ..+|.|++-|.++|+.|+..|+.++..|++.+|.+.-.     ..|.+.
T Consensus       155 sskpYvRKkAIl~lykvFLkYPeAl---r--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ff  224 (877)
T KOG1059|consen  155 SSKPYVRKKAILLLYKVFLKYPEAL---R--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFY  224 (877)
T ss_pred             cCchHHHHHHHHHHHHHHHhhhHhH---h--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHH
Confidence            3445667777777777774433322   2  46778888888888888888888888888877776544     466777


Q ss_pred             HHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHH--HhhcCCchhHHHHHh
Q 008940           87 LMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLG--QFAATDSDCKVHIVQ  162 (548)
Q Consensus        87 ~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~--~l~~~~~~~~~~~~~  162 (548)
                      ++|.+ .|.=+....+.++++|+--.|....     ..++++..++.+.. ..+...++.++.  ++.++.+++...+. 
T Consensus       225 kllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-  298 (877)
T KOG1059|consen  225 KLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-  298 (877)
T ss_pred             HHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-
Confidence            77763 3333455567777888766555432     36778888887654 445555555432  33333333222221 


Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940          163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  236 (548)
                       -+++.|--++.++|+.++..++-+++.+....+..   +. .--+.+++.|.+.++.++..|+..|..+...+
T Consensus       299 -LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~---Vq-a~kdlIlrcL~DkD~SIRlrALdLl~gmVskk  367 (877)
T KOG1059|consen  299 -LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA---VQ-AHKDLILRCLDDKDESIRLRALDLLYGMVSKK  367 (877)
T ss_pred             -HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH---HH-HhHHHHHHHhccCCchhHHHHHHHHHHHhhhh
Confidence             26788888889999999999999999998654321   11 23456889999999999999999999887654

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.98  E-value=1.3e-05  Score=61.65  Aligned_cols=87  Identities=25%  Similarity=0.369  Sum_probs=66.8

Q ss_pred             EEEEeCCeEEEchHHHHh-cccHHHHhhhcCC---CCCCCCCceecCCCCHHHHHHHHHHHhc-Cccccc-hHhHHHHHH
Q 008940          383 VTFLVEGRRFYAHRICLL-ASSDAFRAMFDGG---YREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVT-LDIAQDLLR  456 (548)
Q Consensus       383 v~~~~~~~~~~~h~~il~-~~s~~f~~~~~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~-~~~~~~ll~  456 (548)
                      |.+.|||+.|..-+..|. ....+|..|+.++   ........+-++ =+|+.|+.+|+|+.+ |.+..+ ......+++
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~   79 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-RDPELFEYILNYLRTGGKLPIPDEICLEELLE   79 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-cChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence            578899999999999998 5567999999864   334455677774 599999999999999 677764 567889999


Q ss_pred             HHHHhChHhH-HHHH
Q 008940          457 AADQYLLEGL-KRLC  470 (548)
Q Consensus       457 ~a~~~~~~~l-~~~c  470 (548)
                      -|++|+++.+ .+.|
T Consensus        80 Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   80 EAEFYGLDELFIEDC   94 (94)
T ss_dssp             HHHHHT-HHHHBHHC
T ss_pred             HHHHcCCCccccCCC
Confidence            9999999998 6655

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.97  E-value=0.00034  Score=68.43  Aligned_cols=256  Identities=12%  Similarity=0.043  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHHHhhccCcchhhHhhhcC-ChHHH-HHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcC----Ch
Q 008940           52 TKVQRAAAGALRTLAFKNDENKNQIVECN-ALPTL-ILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG----AL  124 (548)
Q Consensus        52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L-v~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g----~i  124 (548)
                      ..++..++.++++.+.. ..-...+...+ ++-.+ ...++ .++..+|..++.+|.+-.   ...+..+..++    ++
T Consensus       148 ~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl---~fv~~nf~~E~erNy~m  223 (858)
T COG5215         148 VSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL---MFVQGNFCYEEERNYFM  223 (858)
T ss_pred             hHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH---HHHHHhhcchhhhchhh
Confidence            66889999999999973 33323333333 22222 23333 457788999999987732   22333333332    44


Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch-hh---
Q 008940          125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AG---  200 (548)
Q Consensus       125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~---  200 (548)
                      +..++.-+.++.+++..+-.+|..+..-.-.......+.-........+++.+.++...+...-..+|...-.- -.   
T Consensus       224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~  303 (858)
T COG5215         224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY  303 (858)
T ss_pred             eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence            45556667788999999999998887554444444555555566667788888899888887766777432111 00   


Q ss_pred             ----------hH---hcCChHHHHHhhcCC-------ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhh
Q 008940          201 ----------IA---HNGGLVPLLKLLDSK-------NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA  260 (548)
Q Consensus       201 ----------~~---~~~~l~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~  260 (548)
                                +.   -...+|.|+++|...       +..+...|..+|.-++...                        
T Consensus       304 ~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~------------------------  359 (858)
T COG5215         304 LPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK------------------------  359 (858)
T ss_pred             cccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh------------------------
Confidence                      00   112455666666432       1334444444444443322                        


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhHHHHHHH----HhhhhhhhhhHHHHhhhccCCCc--cceeeecCCchHHHHHhhcCCCC
Q 008940          261 TKDCVAKTLKRLEEKIHGRVLNHLLYLM----RVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNP  334 (548)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~~~~~a~~aL~~l~~~~~--~~~~~~~~~~i~~L~~ll~~~~~  334 (548)
                                      ...++.+.+.+.    ++++..-|..|..+++.+..++.  .+..++ ..++|.+..+..++.-
T Consensus       360 ----------------gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l  422 (858)
T COG5215         360 ----------------GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCL  422 (858)
T ss_pred             ----------------hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhccccee
Confidence                            222344444444    44677888999999999988765  344443 5789999999988888


Q ss_pred             ccchhhHHHHHHHhhhcc
Q 008940          335 KQQLDGAVALFKLANKAT  352 (548)
Q Consensus       335 ~v~~~a~~~L~~l~~~~~  352 (548)
                      .++..++|+++.++++..
T Consensus       423 ~vk~ttAwc~g~iad~va  440 (858)
T COG5215         423 WVKSTTAWCFGAIADHVA  440 (858)
T ss_pred             ehhhHHHHHHHHHHHHHH
Confidence            889999999999998753

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.97  E-value=0.00012  Score=73.58  Aligned_cols=266  Identities=18%  Similarity=0.169  Sum_probs=167.2

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhH---HHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIK---TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP   83 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   83 (548)
                      +.+++++.+|+..++.++.- -..+   +.+...|.+  |-+.|....+++.-..+.++..+...-.-.+..---.++++
T Consensus       810 nksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllP  886 (1172)
T KOG0213|consen  810 NKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLP  886 (1172)
T ss_pred             CCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcc
Confidence            55789999999999999831 1111   123333433  66788888899887777777777642111111111246899


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhhcCChhH---HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940           84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  160 (548)
                      .|..+|++....+++.++..++.++...++.   |+.+.   +---|+.+|...+.++++.|..+++.++.-       +
T Consensus       887 rltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iaka-------I  956 (1172)
T KOG0213|consen  887 RLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKA-------I  956 (1172)
T ss_pred             cchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-------c
Confidence            9999999999999999999999999877652   44433   223577888888899999999999998732       2


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchH
Q 008940          161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA  240 (548)
Q Consensus       161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  240 (548)
                      .-..++..|+.-|+..+.+.|....-++.-++.....   +   ..+|.|++=-..++..||...+.+++.+-..-....
T Consensus       957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p---F---tVLPalmneYrtPe~nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen  957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP---F---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred             CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc---h---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh
Confidence            2223555666666655544444444444433322211   1   234555555556778888888777776643211100


Q ss_pred             HHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCC
Q 008940          241 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG  320 (548)
Q Consensus       241 ~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~  320 (548)
                      .                                 -.=..+.|.|-..|.+.|+.-|..|+.++.+++.+..+.      |
T Consensus      1031 k---------------------------------dYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~------g 1071 (1172)
T KOG0213|consen 1031 K---------------------------------DYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT------G 1071 (1172)
T ss_pred             h---------------------------------hHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc------C
Confidence            0                                 000124455556667788888999999999998874432      4


Q ss_pred             chHHHHHhhc
Q 008940          321 GLELLLGLLG  330 (548)
Q Consensus       321 ~i~~L~~ll~  330 (548)
                      ....++.||+
T Consensus      1072 ~eda~iHLLN 1081 (1172)
T KOG0213|consen 1072 CEDALIHLLN 1081 (1172)
T ss_pred             cHHHHHHHHH
Confidence            4555555554

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.96  E-value=0.00016  Score=65.60  Aligned_cols=251  Identities=12%  Similarity=0.119  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHhcCC---hHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH-HHHhcCChHHHH
Q 008940           95 AIHYEAVGVIGNLVHSSPNIKKEVLAAGA---LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLI  170 (548)
Q Consensus        95 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~---i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~  170 (548)
                      ..+..-..++.....+++-.    ++.|.   ...|-++++.-++-.+.-|+.++.++... ++.|. ...+..+-..++
T Consensus       123 ~~k~~f~~vf~~~~~~~~~~----v~~~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~  197 (432)
T COG5231         123 KHKKEFLSVFKQMLKDNTSY----VESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFM  197 (432)
T ss_pred             HHHHHHHHHHHHHccCchHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHH
Confidence            34445555555554443322    11221   22333444444555788889999999755 45554 445566777888


Q ss_pred             HhhCC--CCHHHHHHHHHHHHHhhcCCcchhhhHh-cCChHHHHHhhcCC-ChhHHHHHHHHHHhcccC--CcchHHHHH
Q 008940          171 EMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSK-NGSLQHNAAFALYGLADN--EDNVADFIR  244 (548)
Q Consensus       171 ~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~--~~~~~~~~~  244 (548)
                      +.++.  ++.+++.+.+.++|.++.++.....+-. ...+..++.+.+.. ...+.+-+++++.|++..  .+....+..
T Consensus       198 e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll  277 (432)
T COG5231         198 EILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL  277 (432)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh
Confidence            88887  4678999999999999987765422211 12344566666543 467888899999999873  233333333


Q ss_pred             hcCcc----cccccchh-----hh-----------hhhHHHHH----------------------HHHHHHHhhh--hhh
Q 008940          245 VGGVQ----KLQDGEFI-----VQ-----------ATKDCVAK----------------------TLKRLEEKIH--GRV  280 (548)
Q Consensus       245 ~g~i~----~L~~~~~~-----~~-----------~~~~~~~~----------------------~~~~~~~~~~--~~~  280 (548)
                      .|-+.    .|.+...+     .+           +..-|.-.                      -..++....+  ..+
T Consensus       278 l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i  357 (432)
T COG5231         278 LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEI  357 (432)
T ss_pred             hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHH
Confidence            33111    11110000     00           00001000                      0012222222  237


Q ss_pred             hHHHHHHHHhhhhh-hhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          281 LNHLLYLMRVAEKG-VQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       281 ~~~L~~ll~~~~~~-~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +..|..+++..++. .-.-||.-++++.+ .|+.+..+.+.|+-..+.+|++|++++|+..|..++..+...
T Consensus       358 ~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         358 VKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             HHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence            88999999987666 44557777777775 578888889999999999999999999999999998877654

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.00013  Score=70.82  Aligned_cols=188  Identities=13%  Similarity=0.113  Sum_probs=147.0

Q ss_pred             HHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC
Q 008940           56 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC  135 (548)
Q Consensus        56 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~  135 (548)
                      ..++..|..+++.-..-|..+.+..+.+.|+++|.+|+..+.-.+...++|+....+..+..+.+.|+|..++.++.+.+
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            44566777777755566777888899999999999988888888889999998888888999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCchhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc----hhhhHhcC----C
Q 008940          136 SESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN----QAGIAHNG----G  206 (548)
Q Consensus       136 ~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~----~  206 (548)
                      ...+.+..|.+..+..++.+... .....-++..++++..++...+++.+...|.|+..+...    +..+....    .
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            99999999999999877655433 456667889999999999999999999999999864332    22222211    1


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940          207 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI  243 (548)
Q Consensus       207 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  243 (548)
                      ...++..+...+|-.....+..|.+++..+++...++
T Consensus       567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V  603 (743)
T COG5369         567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV  603 (743)
T ss_pred             HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence            2335555666777666777999999987776666554

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.96  E-value=0.0014  Score=68.17  Aligned_cols=162  Identities=20%  Similarity=0.170  Sum_probs=100.8

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh------------------cCCChhHHHHHH
Q 008940          165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL------------------DSKNGSLQHNAA  226 (548)
Q Consensus       165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll------------------~~~~~~v~~~a~  226 (548)
                      .-..+++.+.+++++++..|..||++++.+.-..       .+|-++..+                  ...........+
T Consensus       858 ~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~-------yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v  930 (1233)
T KOG1824|consen  858 LKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPK-------YLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYV  930 (1233)
T ss_pred             hHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHh-------HHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhH
Confidence            3445677778889999999999999998754221       222222222                  222222222222


Q ss_pred             HHHHhc-ccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhh
Q 008940          227 FALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH  305 (548)
Q Consensus       227 ~~L~~l-~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~  305 (548)
                      .-+|.+ ..+.++.+.                  .....+++++..+...-....+++|-..+.++.+..|..+..++..
T Consensus       931 ~~IW~lL~k~cE~~ee------------------gtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKf  992 (1233)
T KOG1824|consen  931 EKIWALLFKHCECAEE------------------GTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKF  992 (1233)
T ss_pred             HHHHHHHHHhcccchh------------------hhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeee
Confidence            222222 222222111                  1123345555555555556688999889999999999888888876


Q ss_pred             ccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          306 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       306 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ........-......-+..++.++++++.+||+.|..++...+++.
T Consensus       993 sisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen  993 SISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred             eecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccC
Confidence            6655443333333456788899999999999999999998888754

>TIGR02270 conserved hypothetical protein

Probab=97.95  E-value=0.0012  Score=65.07  Aligned_cols=210  Identities=13%  Similarity=0.007  Sum_probs=135.8

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      +..|++.|.++++.++..++.+|+.+-.           .+..+.|+.+|.++++.++..++.+++..-           
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence            6788999999999999999999987664           346788999999999999998887776631           


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA  199 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  199 (548)
                       ....+.+..++++.++.++..|+.+|+.+-..           ..++.|...+.+.++.|+..|++++..+...     
T Consensus       146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~-----  208 (410)
T TIGR02270       146 -HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSR-----  208 (410)
T ss_pred             -cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-----
Confidence             22456888899999999999999999998532           3567788889999999999999999777431     


Q ss_pred             hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhh
Q 008940          200 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR  279 (548)
Q Consensus       200 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (548)
                           .++..+..+...........+..++... ..+.....+.+.      ...       ..........+..+.+..
T Consensus       209 -----~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~~a~~~L~~l------l~d-------~~vr~~a~~AlG~lg~p~  269 (410)
T TIGR02270       209 -----LAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGPDAQAWLREL------LQA-------AATRREALRAVGLVGDVE  269 (410)
T ss_pred             -----hHHHHHHHHHhccCccHHHHHHHHHHhC-CchhHHHHHHHH------hcC-------hhhHHHHHHHHHHcCCcc
Confidence                 1223333323222222222222222221 111111111110      000       001112223333445556


Q ss_pred             hhHHHHHHHHhhhhhhhhhHHHHhhhccCC
Q 008940          280 VLNHLLYLMRVAEKGVQRRVALALAHLCSP  309 (548)
Q Consensus       280 ~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~  309 (548)
                      .++.|+..+....  ++..|..++..+..-
T Consensus       270 av~~L~~~l~d~~--~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       270 AAPWCLEAMREPP--WARLAGEAFSLITGM  297 (410)
T ss_pred             hHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence            7888888776544  888899999888753

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.94  E-value=0.00089  Score=65.30  Aligned_cols=156  Identities=32%  Similarity=0.420  Sum_probs=119.9

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      ..++.+.+.+.+.+..++..+...++.+..           .-.++.+..++.+.++.+|..++.+|+.+-  .+     
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~-----  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP-----  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-----
Confidence            367788899999899999999999776664           236889999999999999999999888883  12     


Q ss_pred             HHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCC----------H--HHHHHH
Q 008940          118 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD----------V--QLREMS  184 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~----------~--~v~~~a  184 (548)
                          ..++.++.++. +.+..++..++++|..+-..           ..+..++..+.++.          +  .++..+
T Consensus       105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                25788899888 58888999999999998421           13566777776644          2  467777


Q ss_pred             HHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940          185 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       185 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  236 (548)
                      ..+|+.+...          ..++.+..++.+.+..++..+..+|..+..+.
T Consensus       170 ~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         170 AEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             HHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence            7777776422          35677888888888889999999998887654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.00064  Score=66.64  Aligned_cols=303  Identities=13%  Similarity=0.049  Sum_probs=187.3

Q ss_pred             hhhhh-HHHHHHHHHHHHHhhhChhhHHHHHhcCCc-hHHHH-hhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCC
Q 008940            6 SRAVN-SVIRRAADAITNLAHENSSIKTRVRMEGGI-PPLVE-LLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNA   81 (548)
Q Consensus         6 ~~~~~-~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i-~~L~~-ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~   81 (548)
                      +...| .....++..+.+.|... .....+...+.+ -.++. -++ .++..+|..|+.+|.+-+.   ..+..+..++-
T Consensus       143 g~eqp~~~k~~sl~~~gy~ces~-~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~e  218 (858)
T COG5215         143 GDEQPVSGKCESLGICGYHCESE-APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEE  218 (858)
T ss_pred             cccCchHhHHHHHHHHHHHhhcc-CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhh
Confidence            33444 55667888899999532 224444444443 34443 223 3568899999999987442   12222332322


Q ss_pred             ----hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH
Q 008940           82 ----LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK  157 (548)
Q Consensus        82 ----i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  157 (548)
                          ++...+.-+.++.+++..+..+|..+..-....-...++........+.+++.+.++...++.....+|....+..
T Consensus       219 rNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~  298 (858)
T COG5215         219 RNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGE  298 (858)
T ss_pred             hchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhH
Confidence                3334455567899999999999999987666655566666666677788899999999999988888874321111


Q ss_pred             HHH----------------HhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh
Q 008940          158 VHI----------------VQRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL  214 (548)
Q Consensus       158 ~~~----------------~~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll  214 (548)
                      -..                .-..++|.|+.+|..       ++..+...|..||.-.+....++  +.+ ..+.-+-+-+
T Consensus       299 ~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~--i~~-pVl~FvEqni  375 (858)
T COG5215         299 MEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK--IMR-PVLGFVEQNI  375 (858)
T ss_pred             HHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH--hHH-HHHHHHHHhc
Confidence            111                112478889999865       23456777777777666543322  222 1222233456


Q ss_pred             cCCChhHHHHHHHHHHhcccCCcc--hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhh
Q 008940          215 DSKNGSLQHNAAFALYGLADNEDN--VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE  292 (548)
Q Consensus       215 ~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~  292 (548)
                      ++++..-++.++.+++.+...+..  ...+                                  =...+|-+...+.++.
T Consensus       376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~----------------------------------V~qalp~i~n~m~D~~  421 (858)
T COG5215         376 RSESWANREAAVMAFGSVMHGPCEDCLTKI----------------------------------VPQALPGIENEMSDSC  421 (858)
T ss_pred             cCchhhhHHHHHHHhhhhhcCccHHHHHhh----------------------------------HHhhhHHHHHhcccce
Confidence            677888888899999988765432  1111                                  1224666667777777


Q ss_pred             hhhhhhHHHHhhhccCCCc---cceeeecCCchHH-HHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          293 KGVQRRVALALAHLCSPDD---QRTIFIDGGGLEL-LLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       293 ~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~i~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      -.++..++|+++.++..-.   +... .-.+.+.. ++.+  .++|.+..+++|...|++.+..
T Consensus       422 l~vk~ttAwc~g~iad~va~~i~p~~-Hl~~~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a  482 (858)
T COG5215         422 LWVKSTTAWCFGAIADHVAMIISPCG-HLVLEVSASLIGL--MDCPFRSINCSWRKENLVDHIA  482 (858)
T ss_pred             eehhhHHHHHHHHHHHHHHHhcCccc-cccHHHHHHHhhh--hccchHHhhhHHHHHhHHHhhh
Confidence            7888999999999976411   1100 00111222 2222  3467888899999999998754

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.91  E-value=4.2e-05  Score=58.07  Aligned_cols=86  Identities=34%  Similarity=0.448  Sum_probs=69.7

Q ss_pred             chHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           40 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        40 i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      |+.|++.| +++++.+|..++.+|+.+..  +         ..++.|+.+++++++.+|..|+++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57889988 88899999999999996643  2         35899999999999999999999999883          


Q ss_pred             HhcCChHHHHHhhhcCC-hHHHHHHHHHHH
Q 008940          119 LAAGALQPVIGLLSSCC-SESQREAALLLG  147 (548)
Q Consensus       119 ~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~  147 (548)
                       ....++.|.+++.+++ ..++..|+.+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             1237899999998765 456788888774

>PF05536 Neurochondrin: Neurochondrin

Probab=97.90  E-value=0.00078  Score=69.16  Aligned_cols=194  Identities=18%  Similarity=0.188  Sum_probs=142.2

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcch---hhHhhhcCChHHHHHHhcc-------CChHHHHHHHHHHHHhhc
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---KNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVH  109 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~Lv~ll~~-------~~~~v~~~a~~~L~~l~~  109 (548)
                      +...+.+|+..+.+-|..++..+.+++.+++..   ++.+.+.=+.+-+-++|++       +....+..|+.+|..++.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            456788899888888999999999999865533   3346666567788888886       345678889999999987


Q ss_pred             CChhHHHHHHhcCChHHHHHhhhcCCh-HHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 008940          110 SSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL  188 (548)
Q Consensus       110 ~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L  188 (548)
                      + ++....---.+-||.|+.++.+.+. ++...+..+|..++ ..++.+..+.+.|.++.|.+.+.+ .+...+.++.++
T Consensus        87 ~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   87 D-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             C-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            5 5543322223579999999988777 99999999999999 558889999999999999999988 557789999999


Q ss_pred             HHhhcCCcchhhhHh----cCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940          189 GRLAQDMHNQAGIAH----NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       189 ~~l~~~~~~~~~~~~----~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  236 (548)
                      .+++........-..    ...++.+...+.......+-..+..|..+-...
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence            998865442111011    122344555555555556667788888876544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0002  Score=69.98  Aligned_cols=328  Identities=17%  Similarity=0.135  Sum_probs=187.5

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM   88 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      ..++-.||..++++++-...... ..-..+...+.++..+++..++. ++..+-.+... ..+....+.=.+.++.|-.-
T Consensus        98 ~~vRyyACEsLYNiaKv~k~~v~-~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~er  175 (675)
T KOG0212|consen   98 SQVRYYACESLYNIAKVAKGEVL-VYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRER  175 (675)
T ss_pred             ceeeeHhHHHHHHHHHHhccCcc-cchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence            35677999999999852111111 11123344556666666666663 33333333321 01111122222344444444


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcC---CchhHHHHHhcCC
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT---DSDCKVHIVQRGA  165 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~g~  165 (548)
                      +...++..|...+.-|..|-.. |+..-.-.-...++.|..+|.+++.+++..+-.++.++...   +|..   +--...
T Consensus       176 iy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~  251 (675)
T KOG0212|consen  176 IYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDM  251 (675)
T ss_pred             HhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccc
Confidence            4456888998888888777433 55433333346788889999999999998777766665421   1221   122457


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChh-HHHHHHH---HHHhcccCCcchHH
Q 008940          166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS-LQHNAAF---ALYGLADNEDNVAD  241 (548)
Q Consensus       166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-v~~~a~~---~L~~l~~~~~~~~~  241 (548)
                      ++.++..+.++++.++..|+..+..+..-.+...-..-.|.+..++..+.+..+. ++..+..   .+..+...+...+.
T Consensus       252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~  331 (675)
T KOG0212|consen  252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE  331 (675)
T ss_pred             hhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc
Confidence            8889999999999999999999999887776655555667777788888776553 4333322   33444433322222


Q ss_pred             HHHhc-Ccccccccch-hhhhhhHHHHHHHHHH-------HHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCcc
Q 008940          242 FIRVG-GVQKLQDGEF-IVQATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ  312 (548)
Q Consensus       242 ~~~~g-~i~~L~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~  312 (548)
                       ++.| +++.|..-.+ +......|+.+-...+       -.+....+.+.|+.-|.+.+.++...++..+.++|.+++.
T Consensus       332 -id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  332 -IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             -cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence             1111 1111111000 0001111111111111       1123345788888888889999999999999999988776


Q ss_pred             ceeeecCCchHHHHHhhc---CCCCccchhhHHHHHHHhhh
Q 008940          313 RTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       313 ~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~  350 (548)
                      .      +..+.+..+|.   ....-....+.-.+..|+.-
T Consensus       411 ~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  411 P------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             c------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            5      33555555554   43333466777777777653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.88  E-value=0.00022  Score=75.64  Aligned_cols=286  Identities=15%  Similarity=0.081  Sum_probs=178.7

Q ss_pred             hhHHHHHHHHHHHHHhh-hChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc----CcchhhHhhhcCChH
Q 008940            9 VNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----NDENKNQIVECNALP   83 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~   83 (548)
                      .++.+..|+..|..++. -+++.+    -..++|.++.++.++...||..|+.+|..+...    .+.+...+.+. ++|
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP  510 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFP  510 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhh
Confidence            35678889999999985 233322    236899999999999999999999999887642    22233333333 666


Q ss_pred             HHHHHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940           84 TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ  162 (548)
Q Consensus        84 ~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  162 (548)
                      .|-.++.+ ....+|..-+..|..||....    .+.+.+--.....++.+.+.+       ...+. .. ......+. 
T Consensus       511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse-------t~~~~-~~-~~~~~~L~-  576 (1431)
T KOG1240|consen  511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE-------TAPEQ-NY-NTELQALH-  576 (1431)
T ss_pred             hhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc-------ccccc-cc-chHHHHHH-
Confidence            66777776 455677777778888764311    111111111111223333332       00011 01 11122222 


Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHH
Q 008940          163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF  242 (548)
Q Consensus       163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  242 (548)
                      .++-+.+..++.++++-|+..-+..|.-||......+  ...-.+..|+.+|++.++.++..-...|..++..-..+   
T Consensus       577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---  651 (1431)
T KOG1240|consen  577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---  651 (1431)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---
Confidence            2445667777888888899888888888885432211  11124666889999998888766555666555432211   


Q ss_pred             HHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCch
Q 008940          243 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL  322 (548)
Q Consensus       243 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i  322 (548)
                                                      -.+...+|-|.+-|.++++.|...|+.+|.-|+...-.++..+ ...+
T Consensus       652 --------------------------------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~  698 (1431)
T KOG1240|consen  652 --------------------------------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDIL  698 (1431)
T ss_pred             --------------------------------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHH
Confidence                                            0223366777777788899999999999999987665443222 2356


Q ss_pred             HHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          323 ELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       323 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      +....+|.++|.-+|..++..+...++.-
T Consensus       699 ~~v~PlL~hPN~WIR~~~~~iI~~~~~~l  727 (1431)
T KOG1240|consen  699 QDVLPLLCHPNLWIRRAVLGIIAAIARQL  727 (1431)
T ss_pred             HhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence            66677888999999999998888887753

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.011  Score=59.83  Aligned_cols=105  Identities=14%  Similarity=0.154  Sum_probs=73.0

Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC--hHHHHHHHHHHHHhhcCCchhHHH
Q 008940           82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVH  159 (548)
Q Consensus        82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~  159 (548)
                      +..+.+=|.+.|+.....|+.+++|+-+  .+.++.+.     +.+-++|.+++  .-+++.++.+|..|-..+|+.   
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---  182 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---  182 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---
Confidence            3344444556788889999999999832  44444433     23336666554  458888999999988765553   


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940          160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  196 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  196 (548)
                      +-..+..+.++.+|.+.+..+...+...+..++...+
T Consensus       183 ~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p  219 (938)
T KOG1077|consen  183 VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP  219 (938)
T ss_pred             cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence            2234678899999999888888888888888886544

>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO)

Probab=97.86  E-value=3.5e-05  Score=60.55  Aligned_cols=50  Identities=24%  Similarity=0.410  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHHHHH
Q 008940          483 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHN  532 (548)
Q Consensus       483 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~~~  532 (548)
                      |+.++.+|..|+...|.+.|.+||.+||.++.++++|.+||.+.+..+.+
T Consensus         1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~   50 (103)
T PF07707_consen    1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILS   50 (103)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHH
T ss_pred             ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHh
Confidence            78999999999999999999999999999999999999997776554443

BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.85  E-value=0.00032  Score=64.21  Aligned_cols=181  Identities=18%  Similarity=0.133  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHhhhC--hhhHHHHHhc--CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940           11 SVIRRAADAITNLAHEN--SSIKTRVRME--GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~--~~~~~~i~~~--g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +.+..|+..|..+..++  ......+.+.  ..+..+...+.+....+...|+.++..++..-........ ..+++.|+
T Consensus        22 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~l~~Ll  100 (228)
T PF12348_consen   22 EERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DILLPPLL  100 (228)
T ss_dssp             HHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHH
Confidence            66888999999998766  2222222211  4556777788887888999999999999974333333332 34788999


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH----h
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV----Q  162 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~  162 (548)
                      +.+.++...++..|..+|..++...+-....     .++.+...+.+.++.++..++..+..+....+.....+.    -
T Consensus       101 ~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~  175 (228)
T PF12348_consen  101 KKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL  175 (228)
T ss_dssp             HGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred             HHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence            9999999999999999999998765411111     155677778889999999999988888755441111111    1


Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940          163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                      ..+++.+...+.+.++++|..|-.+++.+....+.
T Consensus       176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            35778899999999999999999999999755443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=97.85  E-value=2.4e-05  Score=68.73  Aligned_cols=88  Identities=17%  Similarity=0.291  Sum_probs=64.8

Q ss_pred             cCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCC--ceecCCCCHHHHHHHHHHHhcCcccc---chHh
Q 008940          376 NNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEVFELMMRFIYTGSVDV---TLDI  450 (548)
Q Consensus       376 ~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~--~i~l~~~~~~~~~~~l~~~Yt~~~~~---~~~~  450 (548)
                      ......|+.++.....|++||++|++|+|+|+.+.+++.......  .|..-+++-+.|+.+|+|+|||+.-.   ...+
T Consensus       126 e~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn  205 (401)
T KOG2838|consen  126 ERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQN  205 (401)
T ss_pred             heeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCch
Confidence            334556888888889999999999999999999987654333333  34556889999999999999998743   2344


Q ss_pred             HHHHHHHHHHhCh
Q 008940          451 AQDLLRAADQYLL  463 (548)
Q Consensus       451 ~~~ll~~a~~~~~  463 (548)
                      +.-|-.+..-|+.
T Consensus       206 ~diL~QL~edFG~  218 (401)
T KOG2838|consen  206 SDILEQLCEDFGC  218 (401)
T ss_pred             HHHHHHHHHhhCC
Confidence            5555555555554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.85  E-value=0.00015  Score=66.42  Aligned_cols=182  Identities=21%  Similarity=0.191  Sum_probs=116.3

Q ss_pred             ccCCHHHHHHHHHHHHHhhccC--cchhhHhhhc--CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCC
Q 008940           48 EFTDTKVQRAAAGALRTLAFKN--DENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA  123 (548)
Q Consensus        48 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~  123 (548)
                      .+.+++.|..|+..|..+..++  ......+...  .++..+...+.+....+...|+.++..++......-+.. -...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence            5678999999999999999865  2333333322  456677777778888899999999999975433222222 2347


Q ss_pred             hHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-chhhhH
Q 008940          124 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIA  202 (548)
Q Consensus       124 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~  202 (548)
                      +|.|++.+.++...++..|..+|..++...+.... +    ..+.+...+.+.++.+|..++..+..+....+ ....+.
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            88999999998888999999999999866441111 1    15667778889999999999999999886555 222222


Q ss_pred             h----cCChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940          203 H----NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       203 ~----~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~  235 (548)
                      .    ...++.+...+.+.++++|..|-.++..+...
T Consensus       171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            2    23566688888999999999999999988543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF05536 Neurochondrin: Neurochondrin

Probab=97.84  E-value=0.0019  Score=66.43  Aligned_cols=239  Identities=13%  Similarity=0.067  Sum_probs=159.4

Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhH---HHHHHhcCChHHHHHhhhcC-------ChHHHHHHHHHHHHhh
Q 008940           81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFA  150 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~  150 (548)
                      .++..+.+|+..+.+-|-.++..+.++....+..   ++.+.+.=+.+.+-++|.+.       ....+..|+..|+.+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            3566788888888778888888888887765532   34566766778888999872       2456777888999998


Q ss_pred             cCCchhHHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHH
Q 008940          151 ATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL  229 (548)
Q Consensus       151 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L  229 (548)
                      .. ++....---.+.+|.|+..+...+. .+...+..+|..++..++++..+.+.|+++.|.+.+.+ ++.....++.++
T Consensus        86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             CC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            64 4433221223589999999988766 89999999999999999999999999999999999987 556678888888


Q ss_pred             HhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC
Q 008940          230 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP  309 (548)
Q Consensus       230 ~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~  309 (548)
                      .+++...... ...+.                       ..     .-..+++.+-..........+...+..|..+-..
T Consensus       164 ~~Lls~~~~~-~~~~~-----------------------~~-----~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~  214 (543)
T PF05536_consen  164 LNLLSRLGQK-SWAED-----------------------SQ-----LLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR  214 (543)
T ss_pred             HHHHHhcchh-hhhhh-----------------------HH-----HHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence            8886543211 11000                       00     0012344455555555666678888888888654


Q ss_pred             Cc--cceeeecCCc----hHHHHHhhcCCCCcc-chhhHHHHHHHhhh
Q 008940          310 DD--QRTIFIDGGG----LELLLGLLGSTNPKQ-QLDGAVALFKLANK  350 (548)
Q Consensus       310 ~~--~~~~~~~~~~----i~~L~~ll~~~~~~v-~~~a~~~L~~l~~~  350 (548)
                      .+  ........+.    ..-|..++++.-+.. |..+......|.+.
T Consensus       215 ~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  215 SPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             CCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            43  1222333333    344555666654444 44555555555443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.81  E-value=0.00055  Score=66.77  Aligned_cols=199  Identities=28%  Similarity=0.346  Sum_probs=142.0

Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940           80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  159 (548)
Q Consensus        80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  159 (548)
                      ..++.++..+.+++..++..+...++.+..           ...++.+..++.+.++.++..++.+|+.+-  ++     
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~-----  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP-----  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-----
Confidence            468889999999999999999999776632           236889999999999999999999888873  22     


Q ss_pred             HHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940          160 IVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                          ..++.++.++. +++..+|..++++|+.+-..          ..+.+++..+.+.....   +....     ....
T Consensus       105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~---a~~~~-----~~~~  162 (335)
T COG1413         105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS---AAAAL-----DAAL  162 (335)
T ss_pred             ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh---hhhhc-----cchH
Confidence                36788888888 58889999999999998533          23777888887765333   11111     0000


Q ss_pred             hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec
Q 008940          239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID  318 (548)
Q Consensus       239 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~  318 (548)
                      .                       .....+...+....+....+.+...+.+.+..+|..|+.+|+.+....        
T Consensus       163 ~-----------------------~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------  211 (335)
T COG1413         163 L-----------------------DVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------  211 (335)
T ss_pred             H-----------------------HHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence            0                       000111222333344456777888888888889999999998886654        


Q ss_pred             CCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          319 GGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       319 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                      ....+.+...+.+.+..+|..++.+|..+..
T Consensus       212 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~  242 (335)
T COG1413         212 VEAADLLVKALSDESLEVRKAALLALGEIGD  242 (335)
T ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence            3556788888888888888888887776644

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.80  E-value=0.0005  Score=71.25  Aligned_cols=292  Identities=17%  Similarity=0.140  Sum_probs=162.4

Q ss_pred             cCCHHHHHHHHHHHHHhhccCcchhhHhhh--cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHH
Q 008940           49 FTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP  126 (548)
Q Consensus        49 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  126 (548)
                      +.|.+|++.|+.+++.+... -.  .....  ...++.+++-+  +++-.|..|++++..++...-.+-..-.-..+++.
T Consensus       581 d~DqeVkeraIscmgq~i~~-fg--D~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~  655 (1233)
T KOG1824|consen  581 DSDQEVKERAISCMGQIIAN-FG--DFLGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPE  655 (1233)
T ss_pred             cccHHHHHHHHHHHHHHHHH-Hh--hhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHH
Confidence            35689999999999988752 11  11111  11233344434  46778899999999998764443222233346778


Q ss_pred             HHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCC
Q 008940          127 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG  206 (548)
Q Consensus       127 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  206 (548)
                      +...+.......+.....++-.+..........-.-.-++.-+..++...+..+-+.|..+|..+....+..........
T Consensus       656 l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~i  735 (1233)
T KOG1824|consen  656 LASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPI  735 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhh
Confidence            88888766666666666666555532211111111112334455556667888889999999999988777665566677


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHh----cccC-Ccch--HHHH---HhcCccccccc--chhhhhhhHHHHHHHHHHHH
Q 008940          207 LVPLLKLLDSKNGSLQHNAAFALYG----LADN-EDNV--ADFI---RVGGVQKLQDG--EFIVQATKDCVAKTLKRLEE  274 (548)
Q Consensus       207 l~~L~~ll~~~~~~v~~~a~~~L~~----l~~~-~~~~--~~~~---~~g~i~~L~~~--~~~~~~~~~~~~~~~~~~~~  274 (548)
                      ++.++.+++++-  ++..+..++.+    +... .+..  ..+.   ..-+.+...++  .........|++.-....+.
T Consensus       736 L~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~  813 (1233)
T KOG1824|consen  736 LDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQ  813 (1233)
T ss_pred             HHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccc
Confidence            888999998763  22233332222    2211 1111  1111   11111111100  00112234454433333332


Q ss_pred             hhhhhhhHHHHHHHHh--hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          275 KIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       275 ~~~~~~~~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      .. ......++.=+.+  .+..++.-|...|+.+-+.....   -..+.-..++..+++++++++.+|+.+|++++.+.
T Consensus       814 ~s-~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn  888 (1233)
T KOG1824|consen  814 KS-KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN  888 (1233)
T ss_pred             cc-hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc
Confidence            21 2234444444443  45667777777887776543311   11233456788889999999999999999998854

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.79  E-value=2.3e-05  Score=74.88  Aligned_cols=131  Identities=21%  Similarity=0.190  Sum_probs=113.7

Q ss_pred             CeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHH---HHHHHHHHhChHh
Q 008940          389 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ---DLLRAADQYLLEG  465 (548)
Q Consensus       389 ~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~---~ll~~a~~~~~~~  465 (548)
                      ++.+.+|+.+++++++.|+.|+..+..+.....+.+.+.+++.++.+..|.|+..-....+...   .++.++..++.+.
T Consensus       109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~  188 (297)
T KOG1987|consen  109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH  188 (297)
T ss_pred             CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence            5669999999999999999999988777777777889999999999999999977655555554   7888999999999


Q ss_pred             HHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHH--hHHHhhCcchh
Q 008940          466 LKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIME--HFDKLSTRPGH  519 (548)
Q Consensus       466 l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~~~~~~~f  519 (548)
                      ++..|...+...++..++...+..+..++...+...+..++..  +++.+.+..++
T Consensus       189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~  244 (297)
T KOG1987|consen  189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNE  244 (297)
T ss_pred             HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence            9999999999999999988888999999999999999999986  77777654444

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.79  E-value=8.4e-05  Score=56.56  Aligned_cols=68  Identities=28%  Similarity=0.311  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc--cCCHHHHHHHHHHHHHhhccCcchhhHhhhc
Q 008940           12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVEC   79 (548)
Q Consensus        12 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   79 (548)
                      .+....+.|+++++.++.++..+.+.|+++.++....  ..+|-++++|+.++++++.++++|++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3567789999999999999999999999999998765  4569999999999999999999999988764

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=0.0016  Score=65.01  Aligned_cols=254  Identities=17%  Similarity=0.115  Sum_probs=154.9

Q ss_pred             hhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940           46 LLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  124 (548)
Q Consensus        46 ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  124 (548)
                      ...+....+|..|..+...+... ++.....     .++.++.-+.+..+..+..++..++.++...+.. -......++
T Consensus       224 ~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap~q-Ls~~lp~ii  297 (569)
T KOG1242|consen  224 NFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ-LSLCLPDLI  297 (569)
T ss_pred             HhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH-HHHHHhHhh
Confidence            33445678888877777666542 1111111     3445555555558899999999999997665543 444456799


Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhc
Q 008940          125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN  204 (548)
Q Consensus       125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  204 (548)
                      |.+.+.|.+..+++++.+..++.++++.- ++.. +  ...+|.|++.+.++...+.+. ...|+.-....     .++.
T Consensus       298 P~lsevl~DT~~evr~a~~~~l~~~~svi-dN~d-I--~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~-----~V~~  367 (569)
T KOG1242|consen  298 PVLSEVLWDTKPEVRKAGIETLLKFGSVI-DNPD-I--QKIIPTLLDALADPSCYTPEC-LDSLGATTFVA-----EVDA  367 (569)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHhh-ccHH-H--HHHHHHHHHHhcCcccchHHH-HHhhcceeeee-----eecc
Confidence            99999999999999999999999998652 2322 1  237788999998876444332 22222211111     1122


Q ss_pred             CCh----HHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhh
Q 008940          205 GGL----VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV  280 (548)
Q Consensus       205 ~~l----~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (548)
                      ..+    +.|.+-+...+..+++.++.++.|++..-+....+..  .+                             ...
T Consensus       368 psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap--fl-----------------------------~~L  416 (569)
T KOG1242|consen  368 PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP--FL-----------------------------PSL  416 (569)
T ss_pred             hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh--hH-----------------------------HHH
Confidence            233    3344445556777889999999999874433222211  00                             012


Q ss_pred             hHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCcc-chhhHHHHHHHhh
Q 008940          281 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQ-QLDGAVALFKLAN  349 (548)
Q Consensus       281 ~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v-~~~a~~~L~~l~~  349 (548)
                      +|.+-..+....|++|..++++|+.+...-..+..   .+.+|.+...+.+....+ +.-++..+.....
T Consensus       417 lp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~  483 (569)
T KOG1242|consen  417 LPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQDLSEVLA  483 (569)
T ss_pred             hhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhHHHhhhHHHHHh
Confidence            33333344446799999999999888765443332   566777877776544443 4444555554443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.76  E-value=0.0066  Score=59.84  Aligned_cols=270  Identities=15%  Similarity=0.124  Sum_probs=149.8

Q ss_pred             HhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940           45 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  124 (548)
Q Consensus        45 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  124 (548)
                      ..+++.-..+...+++++..++..+  ......+. .+..|-.+|.++....|-.|+++|..|+...|..  ..   -+=
T Consensus       271 ~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v~---vcN  342 (898)
T COG5240         271 SWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--VS---VCN  342 (898)
T ss_pred             HHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--ee---ecC
Confidence            3444445778889999988888632  12222222 5667777888899999999999999999876652  00   112


Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhh----
Q 008940          125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG----  200 (548)
Q Consensus       125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~----  200 (548)
                      +-+=.++.+.+..+...|...|..-  +.++....+++  .++.++.=+.++   .+..+..++..||...+.+..    
T Consensus       343 ~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~SD~---FKiI~ida~rsLsl~Fp~k~~s~l~  415 (898)
T COG5240         343 KEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDMSDG---FKIIAIDALRSLSLLFPSKKLSYLD  415 (898)
T ss_pred             hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhhccC---ceEEeHHHHHHHHhhCcHHHHHHHH
Confidence            2344455666666666666665553  44455544443  344444434433   444445555555544333211    


Q ss_pred             -----hHhcCCh-------HHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHh-cCcccccccchhhhhhhHHHHH
Q 008940          201 -----IAHNGGL-------VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV-GGVQKLQDGEFIVQATKDCVAK  267 (548)
Q Consensus       201 -----~~~~~~l-------~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~~~~~~~~~~~~~~~  267 (548)
                           +.+.|++       +.+...+ +..|+-++.|+..|+.+..+.+.-+..++. |++..=-.   .          
T Consensus       416 FL~~~L~~eGg~eFK~~~Vdaisd~~-~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP---~----------  481 (898)
T COG5240         416 FLGSSLLQEGGLEFKKYMVDAISDAM-ENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGP---R----------  481 (898)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHH-hhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCC---C----------
Confidence                 1223332       1222222 123445555555555554433332222111 10000000   0          


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHH
Q 008940          268 TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL  347 (548)
Q Consensus       268 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  347 (548)
                            ..-.+..+.++..-+--.+.-+|.+|..||..++.+.+..  +........|-+.+.+.+.++|..|+.+|.++
T Consensus       482 ------a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~  553 (898)
T COG5240         482 ------AKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLNDQDDEVRDRASFLLRNM  553 (898)
T ss_pred             ------CCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence                  0001124455554444467789999999999998765533  23334567788899999999999999999998


Q ss_pred             hhhc
Q 008940          348 ANKA  351 (548)
Q Consensus       348 ~~~~  351 (548)
                      -...
T Consensus       554 ~~~d  557 (898)
T COG5240         554 RLSD  557 (898)
T ss_pred             hhhh
Confidence            6543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.75  E-value=7.3e-05  Score=56.71  Aligned_cols=86  Identities=35%  Similarity=0.506  Sum_probs=70.3

Q ss_pred             hHHHHHHh-ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940           82 LPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        82 i~~Lv~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  160 (548)
                      ++.|++.+ +++++.+|..++++|+++-.  +         ..++.|.++++++++.++..++++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57889988 78999999999999996621  2         35899999999999999999999999883          


Q ss_pred             HhcCChHHHHHhhCCC-CHHHHHHHHHHHH
Q 008940          161 VQRGAVRPLIEMLQSP-DVQLREMSAFALG  189 (548)
Q Consensus       161 ~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~  189 (548)
                       ....++.|..++.++ +..++..|+.+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             234889999999875 5567888888875

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.0016  Score=68.41  Aligned_cols=242  Identities=15%  Similarity=0.142  Sum_probs=168.5

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      ..+.++.-|+.++..+. .+.+.-..+...|.+..|+.+|.+ .+..|..++..|..+++ +++......+.|++..+..
T Consensus      1784 ~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~ 1860 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILS 1860 (2235)
T ss_pred             CCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhH
Confidence            34678888999988888 678888889999988888888876 57789999999999998 7888888888888888887


Q ss_pred             Hhc-cCChHHHHHHHHHHHHhhcCC---hhHH------------HHHHh-------------------------------
Q 008940           88 MLR-SEDSAIHYEAVGVIGNLVHSS---PNIK------------KEVLA-------------------------------  120 (548)
Q Consensus        88 ll~-~~~~~v~~~a~~~L~~l~~~~---~~~~------------~~~~~-------------------------------  120 (548)
                      ++. +..+..|.+++..++.+..+.   |..+            +.+.+                               
T Consensus      1861 ~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~ 1940 (2235)
T KOG1789|consen 1861 ILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGI 1940 (2235)
T ss_pred             HHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHH
Confidence            765 567788888999998886431   1000            00000                               


Q ss_pred             -------------------------------------------------------------cCChHHHHHhhhcCCh--H
Q 008940          121 -------------------------------------------------------------AGALQPVIGLLSSCCS--E  137 (548)
Q Consensus       121 -------------------------------------------------------------~g~i~~L~~ll~~~~~--~  137 (548)
                                                                                   .|.+..+..++...++  .
T Consensus      1941 i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh 2020 (2235)
T KOG1789|consen 1941 IDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQH 2020 (2235)
T ss_pred             HHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccc
Confidence                                                                         0001111222221111  1


Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC
Q 008940          138 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK  217 (548)
Q Consensus       138 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~  217 (548)
                      .......++..|.+..|...+.+-..|.+|.++..+...+..+-..|+++|..|+.+.-..+.+.....+..++..++..
T Consensus      2021 ~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~ 2100 (2235)
T KOG1789|consen 2021 ELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ 2100 (2235)
T ss_pred             hhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc
Confidence            22222334455555666666677778999999999987766677899999999999888888888888888888887654


Q ss_pred             ChhHHHHHHHHHHhcccC--CcchHHHHHhcCcccccc
Q 008940          218 NGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQD  253 (548)
Q Consensus       218 ~~~v~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~  253 (548)
                      - .....|+.+|.++...  .+-..+..+.|.++-|+.
T Consensus      2101 ~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~ 2137 (2235)
T KOG1789|consen 2101 P-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQ 2137 (2235)
T ss_pred             c-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHH
Confidence            3 3345788888888542  334455667788877654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.00017  Score=71.63  Aligned_cols=284  Identities=16%  Similarity=0.125  Sum_probs=149.9

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCCh-----hHHHH
Q 008940           43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-----NIKKE  117 (548)
Q Consensus        43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~  117 (548)
                      |..+..+.+..||..|+.+|..|..+..-. .     -.....++++.+.+..+|..|+.+++-...-.+     +..+.
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLS-K-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhccccccc-H-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            445555556666666666666555421111 1     135567889999999999999777765543331     11112


Q ss_pred             HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh--h---
Q 008940          118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL--A---  192 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l--~---  192 (548)
                      -....+...+...+.+-+..++..|+.+|+.+-..+++...+..+..++.    -++.... ..+.......+-  +   
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms----~lRRkr~-ahkrpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS----RLRRKRT-AHKRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh----hhhhhhh-cccchHHHHhcCCcccCc
Confidence            22234677888888888888999999999888655555444444433333    2221100 000111111111  0   


Q ss_pred             ---------cCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhH
Q 008940          193 ---------QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD  263 (548)
Q Consensus       193 ---------~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~  263 (548)
                               ..+.....++..|+...++.-+.+.--+|+..|+..++.|+.+...-..-    .+..|+++..+..  ..
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~----aldfLvDMfNDE~--~~  425 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR----ALDFLVDMFNDEI--EV  425 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHhccHH--HH
Confidence                     01112234667788888888888877899999999999998754331110    1112222111111  11


Q ss_pred             HHHHHHHHHH-----HhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHH-Hhhc--CCCCc
Q 008940          264 CVAKTLKRLE-----EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL-GLLG--STNPK  335 (548)
Q Consensus       264 ~~~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~-~ll~--~~~~~  335 (548)
                      ...++...+.     ..+....++.++..|.+.++++|++.-..|.+.-        +.+.+++...+ .++.  ..-|.
T Consensus       426 VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~--------~~d~~~i~m~v~~lL~~L~kyPq  497 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNAR--------VSDLECIDMCVAHLLKNLGKYPQ  497 (823)
T ss_pred             HHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHhhhCCC
Confidence            1111111111     2234456677777777777777776655554331        22223333322 2333  13344


Q ss_pred             cchhhHHHHHHHhhhc
Q 008940          336 QQLDGAVALFKLANKA  351 (548)
Q Consensus       336 v~~~a~~~L~~l~~~~  351 (548)
                      -+-....++..+..+.
T Consensus       498 Drd~i~~cm~~iGqnH  513 (823)
T KOG2259|consen  498 DRDEILRCMGRIGQNH  513 (823)
T ss_pred             CcHHHHHHHHHHhccC
Confidence            5556666677776654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.73  E-value=0.00014  Score=71.71  Aligned_cols=262  Identities=15%  Similarity=0.135  Sum_probs=163.7

Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhH--HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940           81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  158 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  158 (548)
                      ++..++.+|+++.+.+|..|+.+.+.|+..-..|  .+.+...|.  .|..-+....+++.-..+.+++.+.+...-...
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            4556678889999999999999999886321211  122222232  355556667788777666666666533211000


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHh-cCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc
Q 008940          159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED  237 (548)
Q Consensus       159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  237 (548)
                      +-=-.|++|.|...|++....+..+....++.+|...+......+ ....-.|+.+|++-+.+++++|...++.++.--.
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG  762 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG  762 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence            001257999999999999999999999999999977654221111 1123347888899999999999999998876332


Q ss_pred             chHHHHHhcCcccccccchhhh-hhhHHHHHHHHHHHHhhh-hhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--Cccc
Q 008940          238 NVADFIRVGGVQKLQDGEFIVQ-ATKDCVAKTLKRLEEKIH-GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQR  313 (548)
Q Consensus       238 ~~~~~~~~g~i~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~  313 (548)
                      .+..      +..|++...... ....|.+-+.....+... -.++|.|+.=-..++..+|...+.+++.+-..  ...+
T Consensus       763 Pqdv------L~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~  836 (975)
T COG5181         763 PQDV------LDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL  836 (975)
T ss_pred             HHHH------HHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence            2222      222222222111 123343333333333321 23566666555557888999999998887543  2233


Q ss_pred             eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          314 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       314 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      ..+.  ...|.|...+.+.++..|.-|...+..|+-++.
T Consensus       837 dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         837 DYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             HHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence            3322  345777778888888888888888888877643

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.0017  Score=65.60  Aligned_cols=215  Identities=12%  Similarity=0.126  Sum_probs=129.5

Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH
Q 008940           82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV  161 (548)
Q Consensus        82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  161 (548)
                      .+.++.+|++..+-+|..|+.++..+....|+.-     ...+|.|..-|.++++.++..|+..++.|+..+|.+-.   
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence            4455677777777788888877777765544431     13577777788888888888888888888877665533   


Q ss_pred             hcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-hhHHHHHHHHHHhc--ccC-C
Q 008940          162 QRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGL--ADN-E  236 (548)
Q Consensus       162 ~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l--~~~-~  236 (548)
                        ..-|.+..+|... +.=+....+..+++|+.-.+.-    ....+++|.+++.+.. ..+...++.++...  +.. +
T Consensus       218 --~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL----gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~  291 (877)
T KOG1059|consen  218 --QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL----GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS  291 (877)
T ss_pred             --cccHHHHHHHhccCCCeehHHHHHHHhhccccCchh----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence              2456677776543 2234455566667776444321    1135667777777654 23334444433222  211 1


Q ss_pred             cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc-ccee
Q 008940          237 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTI  315 (548)
Q Consensus       237 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~-~~~~  315 (548)
                      ++...+                                   .-+++.|-.++.++|+..+.-++.+++.++.... .-+ 
T Consensus       292 d~~asi-----------------------------------qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-  335 (877)
T KOG1059|consen  292 DHSASI-----------------------------------QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-  335 (877)
T ss_pred             CcHHHH-----------------------------------HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-
Confidence            111111                                   0145666677777888888888888877765332 111 


Q ss_pred             eecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          316 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       316 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                          .--..+++.|.+.++.+|..|...|.-+.++
T Consensus       336 ----a~kdlIlrcL~DkD~SIRlrALdLl~gmVsk  366 (877)
T KOG1059|consen  336 ----AHKDLILRCLDDKDESIRLRALDLLYGMVSK  366 (877)
T ss_pred             ----HhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence                1235667778888888888888877777664

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.69  E-value=0.00021  Score=54.40  Aligned_cols=68  Identities=19%  Similarity=0.282  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 008940           54 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA  121 (548)
Q Consensus        54 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  121 (548)
                      .+...++.|++++..++.++..+.+.|+++.++....  +.++-++++|++++++|+.++++.++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3567789999999999999999999999999999876  5689999999999999999999998777653

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.69  E-value=0.00048  Score=66.07  Aligned_cols=303  Identities=17%  Similarity=0.140  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc-----CcchhhHhhhcCChHHH
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-----NDENKNQIVECNALPTL   85 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~g~i~~L   85 (548)
                      .++-.+..+|..++..-.-.+..+.+  ....+...+...++.+++++...+..+..+     .|+..+.-...|-.-.+
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            46677888888887543333333332  223344455567899999999988877642     33333333332211111


Q ss_pred             HH------Hh-ccCChHHHHHHHHHHHHhhcCCh----hHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940           86 IL------ML-RSEDSAIHYEAVGVIGNLVHSSP----NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS  154 (548)
Q Consensus        86 v~------ll-~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  154 (548)
                      +-      .. .+.....+...+..+.++.....    +-++.    -.+..+..+-.+++.-++..|.+++.-..-+..
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~  423 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT----LCITFLLGCNDSKNRLVKAAASRALGVYVLHPC  423 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh----hhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence            11      11 12245667777878877753211    10000    011111111122233355556666655544422


Q ss_pred             hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC----Ccc-hhhhHhc-C-ChHHHHHhhc---CCChhHHHH
Q 008940          155 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD----MHN-QAGIAHN-G-GLVPLLKLLD---SKNGSLQHN  224 (548)
Q Consensus       155 ~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~-~~~~~~~-~-~l~~L~~ll~---~~~~~v~~~  224 (548)
                      .......-..+.......+.++.-..|+.++|+++|++.-    -++ +..--+. | .+..+++...   ..+..|+.+
T Consensus       424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~n  503 (728)
T KOG4535|consen  424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSN  503 (728)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence            2223333345556666667776778999999999998722    111 1111111 1 1222222222   235678888


Q ss_pred             HHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhh
Q 008940          225 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA  304 (548)
Q Consensus       225 a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~  304 (548)
                      +..+|+|+..--+   .+.+.+                         ..+..+.....-+-.........||.++|.+++
T Consensus       504 avraLgnllQvlq---~i~~~~-------------------------~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~g  555 (728)
T KOG4535|consen  504 AVRALGNLLQFLQ---PIEKPT-------------------------FAEIIEESIQALISTVLTEAAMKVRWNACYAMG  555 (728)
T ss_pred             HHHHHhhHHHHHH---Hhhhcc-------------------------HHHHHHHHHHhcccceecccccccchHHHHHHH
Confidence            8888888864211   011111                         000111111111111223356789999999999


Q ss_pred             hccCCCccc--eeeecCCchHHHHHhhc-CCCCccchhhHHHHHHH
Q 008940          305 HLCSPDDQR--TIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKL  347 (548)
Q Consensus       305 ~l~~~~~~~--~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l  347 (548)
                      ||..++...  ..-......+.|..|+. ..|-+||.+|+.+|..-
T Consensus       556 NLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp  601 (728)
T KOG4535|consen  556 NLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP  601 (728)
T ss_pred             HhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence            999887642  22233345677777775 68899999999877643

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.68  E-value=0.0022  Score=57.07  Aligned_cols=219  Identities=19%  Similarity=0.234  Sum_probs=135.4

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC--ChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           42 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        42 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      .+.+...+++...+...+.+|+.+..           ...++.|+..+.+.  .+-+|..|..+|+.+. + +       
T Consensus        40 ~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~-------   99 (289)
T KOG0567|consen   40 AITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-P-------   99 (289)
T ss_pred             HHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-h-------
Confidence            33444444444555566666666653           35788999988754  5778999999999885 2 2       


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC---------------chhHHHHHhcCChHHHHHhhCCCCH-H-HHH
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATD---------------SDCKVHIVQRGAVRPLIEMLQSPDV-Q-LRE  182 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---------------~~~~~~~~~~g~v~~L~~ll~~~~~-~-v~~  182 (548)
                        +..+.+-++.+++..++++.+..++..+--.+               |..+   ...+-+..+-..+.+.+. . -|.
T Consensus       100 --~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry  174 (289)
T KOG0567|consen  100 --ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERY  174 (289)
T ss_pred             --hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHH
Confidence              34667777777777778877777776663111               1111   011123333333333221 1 234


Q ss_pred             HHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhh
Q 008940          183 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK  262 (548)
Q Consensus       183 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~  262 (548)
                      .+.+.|.|+...          ..+..+.+-+..++.-.+..++.++++|-...                          
T Consensus       175 ~amF~LRn~g~E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~--------------------------  218 (289)
T KOG0567|consen  175 RAMFYLRNIGTE----------EAINALIDGLADDSALFRHEVAFVFGQLQSPA--------------------------  218 (289)
T ss_pred             hhhhHhhccCcH----------HHHHHHHHhcccchHHHHHHHHHHHhhccchh--------------------------
Confidence            455555554221          12445555566666777788888888775332                          


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHh--hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhh
Q 008940          263 DCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDG  340 (548)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  340 (548)
                                       .++.|...|..  .++.+|..|+.||+.++.          ...++.|.+.+++..+-|+..+
T Consensus       219 -----------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc  271 (289)
T KOG0567|consen  219 -----------------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESC  271 (289)
T ss_pred             -----------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHH
Confidence                             45666666665  689999999999998765          4567888889988887777777


Q ss_pred             HHHHHHHh
Q 008940          341 AVALFKLA  348 (548)
Q Consensus       341 ~~~L~~l~  348 (548)
                      ..+|--+-
T Consensus       272 ~valdm~e  279 (289)
T KOG0567|consen  272 EVALDMLE  279 (289)
T ss_pred             HHHHHHHH
Confidence            76665543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.0029  Score=63.79  Aligned_cols=221  Identities=15%  Similarity=0.170  Sum_probs=136.0

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ...+-++.+|+-+|..|-+.+|+..   ...+....++.+|.+.+..+...+...+.-++..+++....-... .+..|.
T Consensus       159 ~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~  234 (938)
T KOG1077|consen  159 SSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLS  234 (938)
T ss_pred             cchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHH
Confidence            3445678888888888887766632   223556788888888887788888888888887666544332211 122222


Q ss_pred             HHhc-------------cCChHHHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhhhc----CC---hHHHHHHHHH
Q 008940           87 LMLR-------------SEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSS----CC---SESQREAALL  145 (548)
Q Consensus        87 ~ll~-------------~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~----~~---~~~~~~a~~~  145 (548)
                      ....             -+.+=++...+++|...-.. ++..+....+  .+..++...+.    .+   ...+...+.-
T Consensus       235 riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFe  312 (938)
T KOG1077|consen  235 RIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFE  312 (938)
T ss_pred             HHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHH
Confidence            2221             13445666677777666211 1222222222  22222222221    11   1122222333


Q ss_pred             HHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc-CCChhHHHH
Q 008940          146 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHN  224 (548)
Q Consensus       146 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~  224 (548)
                      ..+++.+-+.....+.  .++..|.+++.+.++.+|..++..++.|+........+...  .+.++..|+ ..+..+++.
T Consensus       313 aI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrr  388 (938)
T KOG1077|consen  313 AISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRR  388 (938)
T ss_pred             HHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHH
Confidence            3444444344444444  37888999999999999999999999999887777666654  777888888 678899999


Q ss_pred             HHHHHHhcccCCc
Q 008940          225 AAFALYGLADNED  237 (548)
Q Consensus       225 a~~~L~~l~~~~~  237 (548)
                      |+..|..+|..+.
T Consensus       389 avDLLY~mcD~~N  401 (938)
T KOG1077|consen  389 AVDLLYAMCDVSN  401 (938)
T ss_pred             HHHHHHHHhchhh
Confidence            9999999996553

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.0089  Score=61.21  Aligned_cols=273  Identities=15%  Similarity=0.096  Sum_probs=169.0

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      ..|..++...+.+.+++...-..|...++.+++-.-.     -+..+-+-|.++|+.+|..|+++|..+=       -.+
T Consensus        72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk~L~DpN~LiRasALRvlSsIR-------vp~  139 (968)
T KOG1060|consen   72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQKALKDPNQLIRASALRVLSSIR-------VPM  139 (968)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhh
Confidence            3456777777777888877777777777643332222     3567778889999999999999987772       222


Q ss_pred             HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940          119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  198 (548)
Q Consensus       119 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  198 (548)
                      +..=.+-.+-++..+..+-||+.|+.|+-.+-+-+++...+     .++.+-.+|.+.++.|.-.|+.++-.+|-+   +
T Consensus       140 IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPe---r  211 (968)
T KOG1060|consen  140 IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPE---R  211 (968)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchh---H
Confidence            22112334455666778899999999999998877766554     345666778889999999999999888743   2


Q ss_pred             hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch-----HHHHHhcCcccccccchhhhhhhHHHHHHHHHHH
Q 008940          199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-----ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE  273 (548)
Q Consensus       199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~  273 (548)
                      -.++ .+-...+-+++.+-+.--|...+..|.+.|+..-..     ......|.--.+.+......+.            
T Consensus       212 ldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P------------  278 (968)
T KOG1060|consen  212 LDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTP------------  278 (968)
T ss_pred             HHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCC------------
Confidence            2222 244556777777666555666666776665431110     0111111000111100000000            


Q ss_pred             Hhhhhh---hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          274 EKIHGR---VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       274 ~~~~~~---~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      -..+.+   .++..-.++.+.++.+..+++.+..+++-..+..      ..++.|+++|.+ +..+|.-....+..++..
T Consensus       279 ~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~------~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~  351 (968)
T KOG1060|consen  279 YVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVT------KIAKALVRLLRS-NREVQYVVLQNIATISIK  351 (968)
T ss_pred             cccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHH------HHHHHHHHHHhc-CCcchhhhHHHHHHHHhc
Confidence            000111   3444446778889999999999999998755332      357889998875 456676666666666554


Q ss_pred             c
Q 008940          351 A  351 (548)
Q Consensus       351 ~  351 (548)
                      .
T Consensus       352 ~  352 (968)
T KOG1060|consen  352 R  352 (968)
T ss_pred             c
Confidence            3

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.55  E-value=0.00048  Score=69.47  Aligned_cols=213  Identities=15%  Similarity=0.116  Sum_probs=135.7

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      -|+++-..+.+|..+.....-.+..=-..+++|.|...|++....++..++..++.++...++....--.--+---|+++
T Consensus       854 ypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlel  933 (1172)
T KOG0213|consen  854 YPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLEL  933 (1172)
T ss_pred             cHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence            35555555555555542111111111123789999999999999999999999999998666632221122344467888


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                      |++.+.++|+.|...++-++..       +.-..++..|+.-|+..+...+.....+++-.+..+..       ..++|.
T Consensus       934 LkahkK~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPa  999 (1172)
T KOG0213|consen  934 LKAHKKEIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPA  999 (1172)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHH
Confidence            8888999999999999988632       22223444555555444444444334444444322211       136677


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc
Q 008940          169 LIEMLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED  237 (548)
Q Consensus       169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  237 (548)
                      |+.--+.++..|+.-.+.+++.+...-..  +..+.  ...|.|...|.+.++.-+..|+.++.+++-+..
T Consensus      1000 lmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1000 LMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred             HHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence            77777778888999888888888754332  22222  345667778888888888999999999987643

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.00074  Score=67.34  Aligned_cols=218  Identities=18%  Similarity=0.226  Sum_probs=142.4

Q ss_pred             hhhHHHHHHHHHHHHHhhhCh-hhHHHHHhcC-------------CchHHHHhhccCCHHHHHHHHHHHHHhhccCc---
Q 008940            8 AVNSVIRRAADAITNLAHENS-SIKTRVRMEG-------------GIPPLVELLEFTDTKVQRAAAGALRTLAFKND---   70 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g-------------~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---   70 (548)
                      ..+..++.+++.|.+++.+.+ ..+....+ |             .....++.+++++..||..|++.+.-.+.-.+   
T Consensus       191 s~~~d~~~~~~~l~~~~~~~D~~Vrt~A~e-glL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~  269 (823)
T KOG2259|consen  191 SLTHDREHAARGLIYLEHDQDFRVRTHAVE-GLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL  269 (823)
T ss_pred             cccccHHHHHHHHHHHhcCCCcchHHHHHH-HHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence            345566777777777774322 22333222 2             24566778888889999999887776654221   


Q ss_pred             --chhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH--------------------------------
Q 008940           71 --ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK--------------------------------  116 (548)
Q Consensus        71 --~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--------------------------------  116 (548)
                        ++-+.=....+...+-..+++.+..+|-.|+.+|+.+-..++++-.                                
T Consensus       270 e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs  349 (823)
T KOG2259|consen  270 ERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS  349 (823)
T ss_pred             cchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc
Confidence              1111111112455666677788888888888888877544333211                                


Q ss_pred             ------------------HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCH
Q 008940          117 ------------------EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV  178 (548)
Q Consensus       117 ------------------~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~  178 (548)
                                        .++..|+-..++.-+.++-.+|++.|+..++.|+...|....     ..+..|++++.++..
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~  424 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIE  424 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHH
Confidence                              112223334455555555568999999999999987776543     367899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940          179 QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       179 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  236 (548)
                      .||..|..+|..++..-.     +++.-++.++..|.+.++++++..-..|.+.--.+
T Consensus       425 ~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d  477 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNARVSD  477 (823)
T ss_pred             HHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCc
Confidence            999999999999986632     23345777888888888888877666666553333

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.00079  Score=68.66  Aligned_cols=181  Identities=15%  Similarity=0.074  Sum_probs=125.9

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      ..+.++......|-+.+...-.-+.+.+...|+...     +.+..+++=..++++.+|..|++.++.+-.  +...+  
T Consensus        50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~~i~e--  120 (734)
T KOG1061|consen   50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCLRV--DKITE--  120 (734)
T ss_pred             hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeEee--hHHHH--
Confidence            456677777777877888887888888876555432     356667777778999999999999988843  22222  


Q ss_pred             HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940          119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  198 (548)
Q Consensus       119 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  198 (548)
                         -....+..++++.++.+++.++....++-.   .........|.++.|-+++.+++|.|..+|+.+|..+.....+.
T Consensus       121 ---y~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~  194 (734)
T KOG1061|consen  121 ---YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV  194 (734)
T ss_pred             ---HHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC
Confidence               246689999999999999999999988853   33455777899999999999999999999999999998665531


Q ss_pred             hhh-HhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940          199 AGI-AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  234 (548)
Q Consensus       199 ~~~-~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  234 (548)
                      ... .....+..++..+...+.--+...+.++.+...
T Consensus       195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p  231 (734)
T KOG1061|consen  195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVP  231 (734)
T ss_pred             CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCC
Confidence            111 111122334444444444444444445544443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.0039  Score=68.24  Aligned_cols=318  Identities=15%  Similarity=0.116  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC
Q 008940           13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE   92 (548)
Q Consensus        13 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~   92 (548)
                      +..|+..+..++....+.-.... ...||.|.+.--+++..||..-..+...+..+.....+...+ .+++-|+.-|.+.
T Consensus       974 k~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen  974 KKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSK 1051 (1702)
T ss_pred             ccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccch
Confidence            45566666677643222111111 246777777778899999866555555555432333334444 4888889889999


Q ss_pred             ChHHHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhhhcCChHHHHH---HHHHHHHhhcCCchhHHHHHhcCChH
Q 008940           93 DSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQRE---AALLLGQFAATDSDCKVHIVQRGAVR  167 (548)
Q Consensus        93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~---a~~~L~~l~~~~~~~~~~~~~~g~v~  167 (548)
                      .+++|+.++-+|..|..+.+.  +.+.+  ......+.+.+.+-.+.+|+.   ++.+|..+|...-+...-.-...++.
T Consensus      1052 ewRVReasclAL~dLl~g~~~--~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPF--DQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred             hHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence            999999999999999877543  22222  134455566666555555554   45566666522111000000011233


Q ss_pred             HHHHhhC-----CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHH-HHHHHHHhcccCCcchHH
Q 008940          168 PLIEMLQ-----SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH-NAAFALYGLADNEDNVAD  241 (548)
Q Consensus       168 ~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~  241 (548)
                      .+++.|-     +.-+++|..++.++..|+......-.-.-...++.|++....-++.+.. .++.+ -+.     ....
T Consensus      1130 ~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~-----e~ea 1203 (1702)
T KOG0915|consen 1130 IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INI-----ETEA 1203 (1702)
T ss_pred             HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhh-----HHHH
Confidence            3333332     4567899999999999997766532212222355555555554444433 22222 111     1111


Q ss_pred             HH--HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCC--Cccceee
Q 008940          242 FI--RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP--DDQRTIF  316 (548)
Q Consensus       242 ~~--~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~--~~~~~~~  316 (548)
                      +-  +..+..        ..+...-..+++..+..-.=...+|++..++++ -.-..+..++..+..|+..  .+..  .
T Consensus      1204 lDt~R~s~ak--------sspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt--P 1273 (1702)
T KOG0915|consen 1204 LDTLRASAAK--------SSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT--P 1273 (1702)
T ss_pred             HHHHHHhhhc--------CCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC--c
Confidence            10  000000        000111122334444444445678888899887 4667788888888887642  2222  1


Q ss_pred             ecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          317 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       317 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      .-...+..++..+.+.++.+++.-+.+++.|+.-
T Consensus      1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred             chhHHHHHHhhccccccHHHHHHHHHHHHHHHhc
Confidence            2223466777777888999999999999998874

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=97.51  E-value=0.0005  Score=50.12  Aligned_cols=74  Identities=26%  Similarity=0.412  Sum_probs=60.8

Q ss_pred             CCeEEEchHHHHhcccHHHHhhhcCCC--CCCCCCceecCCCCHHHHHHHHHHH-----hcCc------cccchHhHHHH
Q 008940          388 EGRRFYAHRICLLASSDAFRAMFDGGY--REKDARDIEIPNIRWEVFELMMRFI-----YTGS------VDVTLDIAQDL  454 (548)
Q Consensus       388 ~~~~~~~h~~il~~~s~~f~~~~~~~~--~e~~~~~i~l~~~~~~~~~~~l~~~-----Yt~~------~~~~~~~~~~l  454 (548)
                      ||+.|-..|. .|..|+-.|+||+|..  .|...+++.+++++...++.+.+|+     |++.      ++++++.+.+|
T Consensus        25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleL  103 (112)
T KOG3473|consen   25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALEL  103 (112)
T ss_pred             CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHH
Confidence            4567766665 4668999999999764  5566779999999999999999998     4554      45889999999


Q ss_pred             HHHHHHhC
Q 008940          455 LRAADQYL  462 (548)
Q Consensus       455 l~~a~~~~  462 (548)
                      +.+|+++.
T Consensus       104 L~aAn~Le  111 (112)
T KOG3473|consen  104 LMAANYLE  111 (112)
T ss_pred             HHHhhhhc
Confidence            99999985

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.51  E-value=0.0076  Score=63.42  Aligned_cols=332  Identities=15%  Similarity=0.114  Sum_probs=200.6

Q ss_pred             cchhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChH
Q 008940            4 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP   83 (548)
Q Consensus         4 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   83 (548)
                      .+....|.++..+++-+.+++..   ........+.++.+..+..++...||+.|...+..+...-+. .. =....+.+
T Consensus       245 lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~-~~-d~~~~~~~  319 (759)
T KOG0211|consen  245 LCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD-DD-DVVKSLTE  319 (759)
T ss_pred             hccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC-ch-hhhhhhhH
Confidence            34556678888888888888843   222566678899999999999999999999988888752111 10 22234788


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC-chhHHHHHh
Q 008940           84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQ  162 (548)
Q Consensus        84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~  162 (548)
                      .++...+++++.++.........+...   ..........++....++.+...+++...+.-...++... ......+..
T Consensus       320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~  396 (759)
T KOG0211|consen  320 SLVQAVEDGSWRVSYMVADKFSELSSA---VGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPD  396 (759)
T ss_pred             HHHHHhcChhHHHHHHHhhhhhhHHHH---hccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccch
Confidence            899999999999999998888887532   1112233345777888888877777777776666665332 233344555


Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc-CCcchHH
Q 008940          163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVAD  241 (548)
Q Consensus       163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~  241 (548)
                      ...+|.+-.+..+.++.++...+....++.-..+.  .-.-....+.++..+++..+.++.+..+.+..+-. ++.....
T Consensus       397 ~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~  474 (759)
T KOG0211|consen  397 SSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIS  474 (759)
T ss_pred             hhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccch
Confidence            66788888889999999999888777777533321  11112345667777888888888888876655532 2222222


Q ss_pred             HHHhcCcccccccchhhhhhhHHHHHHHHHHH--------HhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc
Q 008940          242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE--------EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR  313 (548)
Q Consensus       242 ~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~  313 (548)
                      ......++.+.......  ..++.....+.+.        ...+...-+.+...+.+....++.+|+..+..++..-. .
T Consensus       475 ~~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~  551 (759)
T KOG0211|consen  475 TVSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-S  551 (759)
T ss_pred             hhhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-c
Confidence            22333333333211111  2333333332221        22233334444455555667788888887777753211 0


Q ss_pred             eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          314 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       314 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                      . -.....++.++.....++...|...+.++..++.
T Consensus       552 ~-w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~  586 (759)
T KOG0211|consen  552 E-WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE  586 (759)
T ss_pred             c-hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence            0 0111235555555555556666666666555544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.011  Score=60.65  Aligned_cols=276  Identities=15%  Similarity=0.128  Sum_probs=155.5

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      |..+-+-|+++|+.+|..|+++|..+=-       .++..-.+-++-++..++.+-||..|+-++-.+-+-.++.+..+ 
T Consensus       110 IntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-  181 (968)
T KOG1060|consen  110 INTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-  181 (968)
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-
Confidence            4556667778899999988888876542       11111123334456668899999999999999976666655543 


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHH-----------------------------
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI-----------------------------  170 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~-----------------------------  170 (548)
                          +..+-.+|.+.++.|.-.|+.+.-.+|-   +....+.  +-...+.                             
T Consensus       182 ----~e~I~~LLaD~splVvgsAv~AF~evCP---erldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P  252 (968)
T KOG1060|consen  182 ----EEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP  252 (968)
T ss_pred             ----HHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence                3455666777777777777776666651   1111111  1111122                             


Q ss_pred             -----------------------------------------HhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHH
Q 008940          171 -----------------------------------------EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP  209 (548)
Q Consensus       171 -----------------------------------------~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~  209 (548)
                                                               .++.+.++.+...++.+++.++-..+..      ..+.+
T Consensus       253 ~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~------~i~ka  326 (968)
T KOG1060|consen  253 TVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVT------KIAKA  326 (968)
T ss_pred             cccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHH------HHHHH
Confidence                                                     2233445556666666666665332111      23455


Q ss_pred             HHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhh--hHHHHHHHHHHHHhhhh----hhhHH
Q 008940          210 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT--KDCVAKTLKRLEEKIHG----RVLNH  283 (548)
Q Consensus       210 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~  283 (548)
                      |+++|.+. .+++...+..+..++.....        ...+-.+.-|....+  ..|. .-++.+..+.+.    .+++.
T Consensus       327 LvrLLrs~-~~vqyvvL~nIa~~s~~~~~--------lF~P~lKsFfv~ssDp~~vk~-lKleiLs~La~esni~~ILrE  396 (968)
T KOG1060|consen  327 LVRLLRSN-REVQYVVLQNIATISIKRPT--------LFEPHLKSFFVRSSDPTQVKI-LKLEILSNLANESNISEILRE  396 (968)
T ss_pred             HHHHHhcC-CcchhhhHHHHHHHHhcchh--------hhhhhhhceEeecCCHHHHHH-HHHHHHHHHhhhccHHHHHHH
Confidence            66666433 34444444445444432211        111111111211111  1111 112222233332    35666


Q ss_pred             HHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          284 LLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       284 L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      +-...++.+..+...+..+|+.++....    -+....+.-|+.++.+.+..|...+...+..|.+...
T Consensus       397 ~q~YI~s~d~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p  461 (968)
T KOG1060|consen  397 LQTYIKSSDRSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP  461 (968)
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence            6667777777788888889998875422    1223457788999999999999999999999987643

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.44  E-value=0.00024  Score=48.15  Aligned_cols=55  Identities=31%  Similarity=0.381  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008940          136 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  191 (548)
Q Consensus       136 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l  191 (548)
                      +.++..|+++|++++...++.... ....+++.|+.+|+++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999988665444333 4567999999999999999999999999975

...

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.42  E-value=0.0011  Score=65.62  Aligned_cols=214  Identities=14%  Similarity=0.087  Sum_probs=134.7

Q ss_pred             hhHHHHHHHHHHHHHhhhC--hhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            9 VNSVIRRAADAITNLAHEN--SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      -|+++-..+.++..+....  ...+..  ..|++|.|...|++....++...+..++.++...++....--.--+---|+
T Consensus       659 ypEvLgsil~Ai~~I~sv~~~~~mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLv  736 (975)
T COG5181         659 YPEVLGSILKAICSIYSVHRFRSMQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELV  736 (975)
T ss_pred             cHHHHHHHHHHHHHHhhhhcccccCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence            3555555555555554211  111111  248899999999999999999999999999986666322211122344678


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      +.|.+-+.++|+.|...++-++..       +.-.+++..|+.-|+..+...+.....+++-.+..+-.       ..++
T Consensus       737 d~Lks~nKeiRR~A~~tfG~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVl  802 (975)
T COG5181         737 DSLKSWNKEIRRNATETFGCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVL  802 (975)
T ss_pred             HHHHHhhHHHHHhhhhhhhhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhH
Confidence            888889999999999999988632       22223444555555544444444334444444322111       2356


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                      |.|+.=-..++..++.-.+.+++.+-..-.....-.-....|.|-..|.+.++.-+..|...+.+|+-+...
T Consensus       803 P~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g  874 (975)
T COG5181         803 PTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG  874 (975)
T ss_pred             HHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence            777666666788889888888887765433321111112455566788888888899999999999876543

>smart00875 BACK BTB And C-terminal Kelch

Probab=97.41  E-value=0.00023  Score=55.53  Aligned_cols=48  Identities=10%  Similarity=0.207  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHHH
Q 008940          483 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI  530 (548)
Q Consensus       483 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~  530 (548)
                      |+.++.+|..|+.+.|.+.|..||.+||..+.++++|.+||.+.+..+
T Consensus         1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~i   48 (101)
T smart00875        1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSL   48 (101)
T ss_pred             CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHH
Confidence            567899999999999999999999999999999999999976654443

The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.41  E-value=0.014  Score=61.05  Aligned_cols=163  Identities=16%  Similarity=0.150  Sum_probs=121.1

Q ss_pred             hHHHHHHHHH-HHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940           10 NSVIRRAADA-ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus        10 ~~~~~~a~~~-L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      +..+..|++- |+.++.+++ ...      ..+.+++...+.|.+++...-.-|...+..+|+....     .+..+.+=
T Consensus        33 ~~~kidAmK~iIa~M~~G~d-mss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kD  100 (757)
T COG5096          33 DYKKIDAMKKIIAQMSLGED-MSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKD  100 (757)
T ss_pred             hHHHHHHHHHHHHHHhcCCC-hHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhh
Confidence            3445556555 444443333 222      3345677666788888888888888888866632222     35677788


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                      +.++|+.+|..|+++++.+= . ++.-     ..+++.+.+++.++++.||+.|+.++.++-+-++   ....+.|.+..
T Consensus       101 l~d~N~~iR~~AlR~ls~l~-~-~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~  170 (757)
T COG5096         101 LQDPNEEIRGFALRTLSLLR-V-KELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDI  170 (757)
T ss_pred             ccCCCHHHHHHHHHHHHhcC-h-HHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHH
Confidence            88999999999999999882 2 3322     2367899999999999999999999999975543   34667789999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940          169 LIEMLQSPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       169 L~~ll~~~~~~v~~~a~~~L~~l~~~  194 (548)
                      +-.++.+.+|.+..+|..+|..+...
T Consensus       171 l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         171 LKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHhhCCCchHHHHHHHHHHHhchh
Confidence            99999999999999999999998654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.41  E-value=0.00032  Score=47.54  Aligned_cols=55  Identities=36%  Similarity=0.391  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008940           52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL  107 (548)
Q Consensus        52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l  107 (548)
                      +.+|..|+++|++++...++.... ....+++.|+.+|+++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999998755554444 4445899999999999999999999999875

...

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.34  E-value=0.018  Score=50.69  Aligned_cols=175  Identities=11%  Similarity=0.080  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc-----CCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHH
Q 008940           14 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLIL   87 (548)
Q Consensus        14 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~   87 (548)
                      =.|+..+.-++ .+|+.+..+.++.+--.|-.+|..     +.+..|..++.+++.+... +.+....+...++++..++
T Consensus        97 cnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   97 CNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            35566666667 789999999987776666667753     3478999999999999984 3445566777899999999


Q ss_pred             HhccCChHHHHHHHHHHHHhhcCChhHHH------HHHh-cCChHHH-HHhhhcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940           88 MLRSEDSAIHYEAVGVIGNLVHSSPNIKK------EVLA-AGALQPV-IGLLSSCCSESQREAALLLGQFAATDSDCKVH  159 (548)
Q Consensus        88 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~------~~~~-~g~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  159 (548)
                      .+..+++..+..|..++..+..++....-      .+.. .-.+..+ .++.+.+++.+.+.++++..+|+ +++..+..
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs-dnprar~a  254 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS-DNPRARAA  254 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCHHHHHH
Confidence            99999999999999999999877655422      1111 1123333 34445677888999999999996 55666554


Q ss_pred             HHhcCChHH------HHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940          160 IVQRGAVRP------LIEMLQSPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       160 ~~~~g~v~~------L~~ll~~~~~~v~~~a~~~L~~l~~  193 (548)
                      +..  ++|.      +-.+++ +|+..+.+-...+.|++.
T Consensus       255 L~~--clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  255 LRS--CLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT  291 (293)
T ss_pred             HHh--hCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence            432  2221      222222 455666666666666653

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.34  E-value=0.0057  Score=55.86  Aligned_cols=228  Identities=15%  Similarity=0.121  Sum_probs=134.3

Q ss_pred             hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcC-ChHHHHHHhcc--CChHHHHHHHHHHHHhhcCChhHHHHHHh-c
Q 008940           46 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN-ALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-A  121 (548)
Q Consensus        46 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~Lv~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~  121 (548)
                      +++.-++-.+..|++++.++.. .++.|..+-.++ .-..++.+++.  ++..+|..++.+++.++.. +.+.+.+-. .
T Consensus       157 l~Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~  234 (432)
T COG5231         157 LSQLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMD  234 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence            4444456678889999999987 577766654443 45567777764  3678999999999999754 666544333 3


Q ss_pred             CChHHHHHhhhcC-ChHHHHHHHHHHHHhhcCCc-hhHHHHHhcCChHHHHHhhC-C--CCHHHHHHHHHHHHHhhcC--
Q 008940          122 GALQPVIGLLSSC-CSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQ-S--PDVQLREMSAFALGRLAQD--  194 (548)
Q Consensus       122 g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~-~--~~~~v~~~a~~~L~~l~~~--  194 (548)
                      +.+..++++.+.. .+++.+.++.++.|++...+ .......-.|-+.+-++.|. .  .|++++...-..=..|..+  
T Consensus       235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k  314 (432)
T COG5231         235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK  314 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence            5677777777654 36788999999999997432 33333444453444444443 2  3555544322222221111  


Q ss_pred             --------------------Ccch---------hhhHhc--CChHHHHHhhcCCChh-HHHHHHHHHHhccc-CCcchHH
Q 008940          195 --------------------MHNQ---------AGIAHN--GGLVPLLKLLDSKNGS-LQHNAAFALYGLAD-NEDNVAD  241 (548)
Q Consensus       195 --------------------~~~~---------~~~~~~--~~l~~L~~ll~~~~~~-v~~~a~~~L~~l~~-~~~~~~~  241 (548)
                                          +..+         ..+.+.  ..+..|..+++..++. ...-||.-+..+.+ .++.   
T Consensus       315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~---  391 (432)
T COG5231         315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI---  391 (432)
T ss_pred             hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH---
Confidence                                1110         111111  1233455555554443 22233444444433 2222   


Q ss_pred             HHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940          242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  308 (548)
Q Consensus       242 ~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~  308 (548)
                                                    ...+...|+-+.++.++.+++++++.+|+.++..+..
T Consensus       392 ------------------------------~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         392 ------------------------------NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             ------------------------------HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence                                          2234456678889999999999999999999887654

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.32  E-value=0.0005  Score=43.21  Aligned_cols=39  Identities=44%  Similarity=0.548  Sum_probs=35.9

Q ss_pred             hhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhh
Q 008940           28 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA   66 (548)
Q Consensus        28 ~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~   66 (548)
                      ++++..+.+.|+++.|+++++++++.++..++++|++++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            447788899999999999999999999999999999987

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.32  E-value=0.00051  Score=43.19  Aligned_cols=39  Identities=38%  Similarity=0.609  Sum_probs=36.1

Q ss_pred             cchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhh
Q 008940           70 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV  108 (548)
Q Consensus        70 ~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~  108 (548)
                      ++++..+.+.|+++.|++++.+++.+++..++++|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            457888999999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.24  E-value=0.0088  Score=62.42  Aligned_cols=168  Identities=15%  Similarity=0.161  Sum_probs=129.4

Q ss_pred             hccCCHHHHHHHHH-HHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChH
Q 008940           47 LEFTDTKVQRAAAG-ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ  125 (548)
Q Consensus        47 l~~~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  125 (548)
                      +.+.+...+..|++ ++..++.|++     +  .-..+.+++...+.|.++++..-.-|.+.+...|+..-.     +++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-----m--ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avN   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-----M--SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVN   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-----h--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHH
Confidence            67777777877776 6677776533     1  114556677777889999999999999998887753222     467


Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcC
Q 008940          126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG  205 (548)
Q Consensus       126 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  205 (548)
                      .+.+=++++++.+|..|.++++.+=  .++.     -..+++++.+++.++++.||..|+-|+..+-+-+  +....+.|
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~--~~el-----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g  166 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLR--VKEL-----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELG  166 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcC--hHHH-----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--Hhhhhccc
Confidence            8888889999999999999988872  1221     1247789999999999999999999999997543  34455667


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940          206 GLVPLLKLLDSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       206 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~  235 (548)
                      .+..+..++.+.+|.+..+|+.+|..+...
T Consensus       167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         167 LIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            788888999999999999999999988654

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=97.23  E-value=0.00094  Score=61.63  Aligned_cols=87  Identities=18%  Similarity=0.291  Sum_probs=73.9

Q ss_pred             eEEEchHHHHhcccHHHHhhhcC---CCCCCCCCceecC-CCCHHHHHHHHHHHhcCccccchHhHHHHHHHHHHhChHh
Q 008940          390 RRFYAHRICLLASSDAFRAMFDG---GYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEG  465 (548)
Q Consensus       390 ~~~~~h~~il~~~s~~f~~~~~~---~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~a~~~~~~~  465 (548)
                      +.|.|.+.+|-..=.||+..+..   +-.+..  +|+|. ..+-.+|+=+++|++.....++++|+..++.-|+|++|+.
T Consensus        14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~--~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~   91 (317)
T PF11822_consen   14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE--EIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES   91 (317)
T ss_pred             eeeeccHHHHHHhhHHHHHHHhhcccccCcCC--CcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH
Confidence            68999999999999999999965   223333  34443 4688899999999999888999999999999999999999


Q ss_pred             HHHHHHHHHHhcC
Q 008940          466 LKRLCEYTIAQDI  478 (548)
Q Consensus       466 l~~~c~~~l~~~l  478 (548)
                      |++.|-.|+.+++
T Consensus        92 Lve~cl~y~~~~~  104 (317)
T PF11822_consen   92 LVEECLQYCHDHM  104 (317)
T ss_pred             HHHHHHHHHHHhH
Confidence            9999999986653

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>smart00512 Skp1 Found in Skp1 protein family

Probab=97.16  E-value=0.002  Score=50.37  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=55.7

Q ss_pred             CCeEEEchHHHHhcccHHHHhhhcCCCCCC-CCCceecCCCCHHHHHHHHHHHhcCccc-------------------cc
Q 008940          388 EGRRFYAHRICLLASSDAFRAMFDGGYREK-DARDIEIPNIRWEVFELMMRFIYTGSVD-------------------VT  447 (548)
Q Consensus       388 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~-~~~~i~l~~~~~~~~~~~l~~~Yt~~~~-------------------~~  447 (548)
                      +|..|.+.+.+. ..|..++.|+.+...+. ....|++++++..+++.+++|++.-.-.                   ++
T Consensus        10 Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d   88 (104)
T smart00512       10 DGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKID   88 (104)
T ss_pred             CCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCC
Confidence            688999999976 48999999997543222 2258999999999999999999643211                   34


Q ss_pred             hHhHHHHHHHHHHhCh
Q 008940          448 LDIAQDLLRAADQYLL  463 (548)
Q Consensus       448 ~~~~~~ll~~a~~~~~  463 (548)
                      .+.+.+|+.||+++++
T Consensus        89 ~~~l~dLl~AAnyL~I  104 (104)
T smart00512       89 QETLFELILAANYLDI  104 (104)
T ss_pred             HHHHHHHHHHHHhhCC
Confidence            4567777777777764

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=97.13  E-value=0.012  Score=57.42  Aligned_cols=215  Identities=10%  Similarity=0.132  Sum_probs=133.2

Q ss_pred             HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhh-cCChHHHHHHhccC
Q 008940           15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVE-CNALPTLILMLRSE   92 (548)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~-~g~i~~Lv~ll~~~   92 (548)
                      +|.+.|-.+....+..-..+.+.||+..++..++.+-...+..  .-...-..+. ++.+..... ..+.        ..
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~--------~~   72 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSIS--------YQ   72 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccccC--------HH
Confidence            5777888888777777788899999999999987543322221  0000001000 111111111 0000        00


Q ss_pred             ChHHHHHHHHHHHHhhc---CChhHHHHHHh-cCChHHHHHhhhcC---ChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           93 DSAIHYEAVGVIGNLVH---SSPNIKKEVLA-AGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        93 ~~~v~~~a~~~L~~l~~---~~~~~~~~~~~-~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                      ...+.+..++++..+..   +....-+-+++ ...+..|..++++.   .+.+...|+..+..+....|-....+.+.|+
T Consensus        73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl  152 (379)
T PF06025_consen   73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL  152 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence            11222333344444433   11222222333 44566666677664   3778899999999999888888889999999


Q ss_pred             hHHHHHhhC-C---CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC-------hhHHHHHHHHHHhccc
Q 008940          166 VRPLIEMLQ-S---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-------GSLQHNAAFALYGLAD  234 (548)
Q Consensus       166 v~~L~~ll~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~v~~~a~~~L~~l~~  234 (548)
                      ++.+++.+. .   ++.++....-.+|+.+|-+......+.+.+.++.+++++.+++       .+........+-.|.+
T Consensus       153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~R  232 (379)
T PF06025_consen  153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMR  232 (379)
T ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHc
Confidence            999999998 4   4667888888999999999999999999999999998886543       1222333345555666


Q ss_pred             CCcch
Q 008940          235 NEDNV  239 (548)
Q Consensus       235 ~~~~~  239 (548)
                      +....
T Consensus       233 H~p~L  237 (379)
T PF06025_consen  233 HHPSL  237 (379)
T ss_pred             cCHHH
Confidence            54433

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.12  E-value=0.018  Score=47.78  Aligned_cols=125  Identities=18%  Similarity=0.200  Sum_probs=100.8

Q ss_pred             HHHHhcCCchHHHHhhccCC------HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC--ChHHHHHHHHH
Q 008940           32 TRVRMEGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGV  103 (548)
Q Consensus        32 ~~i~~~g~i~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~~v~~~a~~~  103 (548)
                      ..+++.||+..|+++++++.      .+....++.++..|-+++ ..-........+..++..++..  +..+...|+.+
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            34777899999999998766      377788899999998753 3333455555788888888743  68899999999


Q ss_pred             HHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH
Q 008940          104 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK  157 (548)
Q Consensus       104 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  157 (548)
                      |-++...++.....+.++=.++.|+..|+..+++++.++...+-.|....++.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~  137 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK  137 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence            999999988888888888889999999999999999999988887775544433

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.11  E-value=0.056  Score=48.77  Aligned_cols=222  Identities=14%  Similarity=0.159  Sum_probs=138.5

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhc-CCchHHHH-hhc------cCC--H---HHHHHHHHHHHHhhccCcchhh
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVE-LLE------FTD--T---KVQRAAAGALRTLAFKNDENKN   74 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~-ll~------~~~--~---~v~~~a~~~L~~l~~~~~~~~~   74 (548)
                      .+|+.++.|+..|+.--...++..-.+-.. |.+..|++ ...      .+.  .   .-...|+..+..+++ +++.+.
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~   85 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM   85 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence            357888888877766654445554444433 54555544 222      221  2   233455566666776 799999


Q ss_pred             HhhhcCChHHHHHHhccC-----ChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHH
Q 008940           75 QIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ  148 (548)
Q Consensus        75 ~~~~~g~i~~Lv~ll~~~-----~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~  148 (548)
                      .+.+.++.-.|.++|+..     .+.+|..++++++.+...+ ++.-..+...+++|..++.++.+++-.+..|..++..
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            999999999999999743     3578899999999998643 4556777788999999999999888888888888888


Q ss_pred             hhcCCchhH------HHH-HhcCChHHH-HHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHH-HH----Hhhc
Q 008940          149 FAATDSDCK------VHI-VQRGAVRPL-IEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LL----KLLD  215 (548)
Q Consensus       149 l~~~~~~~~------~~~-~~~g~v~~L-~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~-L~----~ll~  215 (548)
                      +..++....      ..+ .-..++..+ ..+.+.+++.+.++..+|-..|+.++..+..+..  .+|. |-    .-+-
T Consensus       166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~--~LP~~Lrd~~f~~~l  243 (262)
T PF04078_consen  166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ--CLPDQLRDGTFSNIL  243 (262)
T ss_dssp             HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH--HS-GGGTSSTTTTGG
T ss_pred             HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH--hCcHHHhcHHHHHHH
Confidence            775532111      111 111233333 3344567889999999999999999988876654  2222 11    1111


Q ss_pred             CCChhHHHHHHHHHHhc
Q 008940          216 SKNGSLQHNAAFALYGL  232 (548)
Q Consensus       216 ~~~~~v~~~a~~~L~~l  232 (548)
                      .+|+.+++.-...+.|+
T Consensus       244 ~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  244 KDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             CS-HHHHHHHHHHHHHT
T ss_pred             hcCHHHHHHHHHHHHHh
Confidence            23566666555555554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.10  E-value=0.0063  Score=65.19  Aligned_cols=248  Identities=15%  Similarity=0.098  Sum_probs=150.1

Q ss_pred             CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCC---hhHHHHHHhcCChHHH
Q 008940           51 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS---PNIKKEVLAAGALQPV  127 (548)
Q Consensus        51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L  127 (548)
                      ..+.+..|+..|..++....+  +... .-++|.++.++.++..+||..|+.+|..+...-   +..-..+..+-++|.|
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~d--e~~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L  512 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDD--EVKL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL  512 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcch--HHHH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence            367788999999999863111  1111 237999999999999999999999998885322   2222344555678999


Q ss_pred             HHhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCC
Q 008940          128 IGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG  206 (548)
Q Consensus       128 ~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  206 (548)
                      -.++.+.+ ..++..-+..|..|+..    ...+.+.+.-.....++.+.+.+       ...+.-. .....++.. +.
T Consensus       513 ~~l~~d~~~~~vRiayAsnla~LA~t----A~rFle~~q~~~~~g~~n~~nse-------t~~~~~~-~~~~~~L~~-~V  579 (1431)
T KOG1240|consen  513 NHLLNDSSAQIVRIAYASNLAQLAKT----AYRFLELTQELRQAGMLNDPNSE-------TAPEQNY-NTELQALHH-TV  579 (1431)
T ss_pred             HhhhccCccceehhhHHhhHHHHHHH----HHHHHHHHHHHHhcccccCcccc-------ccccccc-chHHHHHHH-HH
Confidence            99998844 44565556677777622    11111111111111112232222       0000000 001111211 12


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHH
Q 008940          207 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY  286 (548)
Q Consensus       207 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  286 (548)
                      -.....++.++++.|++.-+..|..||.--.-                                   +..+.-++.+|+.
T Consensus       580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk-----------------------------------~ksND~iLshLiT  624 (1431)
T KOG1240|consen  580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGK-----------------------------------EKSNDVILSHLIT  624 (1431)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh-----------------------------------cccccchHHHHHH
Confidence            23355677777778888777777777741100                                   0011226889999


Q ss_pred             HHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          287 LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       287 ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      +|.+.|+..|.+--..|..++.--..|  -+++..+|.|.+-+.++.+-|...|..++.-|++..
T Consensus       625 fLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~  687 (1431)
T KOG1240|consen  625 FLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG  687 (1431)
T ss_pred             HhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence            999999998887777766554322222  245677899999999999999999999888888764

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.06  E-value=0.19  Score=44.63  Aligned_cols=195  Identities=13%  Similarity=0.160  Sum_probs=130.3

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhc-CCchHHHH-hhc------c-----CCHHHHHHHHHHHHHhhccCcchh
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVE-LLE------F-----TDTKVQRAAAGALRTLAFKNDENK   73 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~-ll~------~-----~~~~v~~~a~~~L~~l~~~~~~~~   73 (548)
                      -++|..++.|+.-|..--+..++....+-.. |....|++ .+.      .     ..+.-...|+..|.-+++ .++.+
T Consensus        35 l~~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvAS-HpdTr  113 (293)
T KOG3036|consen   35 LVSPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVAS-HPDTR  113 (293)
T ss_pred             hhCCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhc-CcchH
Confidence            3456667777766665554334443333332 33333333 221      1     122334566666777776 69999


Q ss_pred             hHhhhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHH
Q 008940           74 NQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG  147 (548)
Q Consensus        74 ~~~~~~g~i~~Lv~ll~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  147 (548)
                      ..+.+..+--.|-.+|..     +.+-+|..++.+++.+...+ .+.-..+...+++|..++.+..+++..+..|..++.
T Consensus       114 ~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlq  193 (293)
T KOG3036|consen  114 RAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQ  193 (293)
T ss_pred             HHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHH
Confidence            999999888888888863     45778999999999998654 345566677899999999999999988999999998


Q ss_pred             HhhcCCchhHH------HHHh-cCChH-HHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhH
Q 008940          148 QFAATDSDCKV------HIVQ-RGAVR-PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA  202 (548)
Q Consensus       148 ~l~~~~~~~~~------~~~~-~g~v~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  202 (548)
                      .+..++....-      .+.. ..++. .+.++.+.+++.+..++.++..+|+.++..+..+.
T Consensus       194 KIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~  256 (293)
T KOG3036|consen  194 KILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALR  256 (293)
T ss_pred             HHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            88765432111      1111 11222 34445566888999999999999998887766554

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.025  Score=60.20  Aligned_cols=256  Identities=17%  Similarity=0.170  Sum_probs=152.2

Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCchhHH
Q 008940           80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKV  158 (548)
Q Consensus        80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~  158 (548)
                      ++++.|+..+++.+..++--|+..++.++...|..  .  ...++...+.++.-.+ +.....++.+|+.++...--...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~--L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE--L--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH--H--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            46777788888999999999999999998876621  1  1124556666554433 55677889999999854322222


Q ss_pred             HHHhcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCCcch--hhhHhcCChHHHHHhhcCCChhHHHHHHHH
Q 008940          159 HIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFA  228 (548)
Q Consensus       159 ~~~~~g~v~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  228 (548)
                      .+.  .++|.++.-+.-        ....+|..|+.++|.++......  ..+...=.-..|...+-+.+..+++.|..+
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence            221  356666666542        24579999999999998654432  222111111123344456778889988888


Q ss_pred             HHhcccCCcchHHHHHhcCcccccc-cchhhhhhhHHHHHHHHHHHHh--hhhhhhHHHHHH-HHhhhhhhhhhHHHHhh
Q 008940          229 LYGLADNEDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEK--IHGRVLNHLLYL-MRVAEKGVQRRVALALA  304 (548)
Q Consensus       229 L~~l~~~~~~~~~~~~~g~i~~L~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~l-l~~~~~~~~~~a~~aL~  304 (548)
                      +........+..     .|++.+.. ..|++.....|.......+..-  .-..++.+++.- +.+-+..+|+.++++|.
T Consensus       495 lqE~VGR~~n~p-----~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~  569 (1133)
T KOG1943|consen  495 LQENVGRQGNFP-----HGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH  569 (1133)
T ss_pred             HHHHhccCCCCC-----CchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence            876654322210     12232222 3344444445543322222211  123455565554 56679999999999999


Q ss_pred             hccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          305 HLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       305 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                      +|+....   .....+.++.|+.-..+++...|.-+..+...+..
T Consensus       570 ~Ls~~~p---k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  570 KLSLTEP---KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHhhH---HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            9875422   12223557777777777777776655555444443

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.97  E-value=0.017  Score=60.88  Aligned_cols=291  Identities=19%  Similarity=0.145  Sum_probs=184.6

Q ss_pred             HHHHHHHHHhh-hChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCC
Q 008940           15 RAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED   93 (548)
Q Consensus        15 ~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~   93 (548)
                      .++.-...++. .+.+....+....++|.+..+..+.+..++...+..+..+.--.+  +..-+ ....+.++..+++.+
T Consensus       374 a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l~de~  450 (759)
T KOG0211|consen  374 AIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNLKDED  450 (759)
T ss_pred             HhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhcchhh
Confidence            33333444442 233333444555566777777777788888777776666653222  11111 125667777888889


Q ss_pred             hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh
Q 008940           94 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML  173 (548)
Q Consensus        94 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll  173 (548)
                      +.++....+.+..+-..++...........+|.+..+-.+....++....+.+..++....   ..+.+...-+.+...+
T Consensus       451 ~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l  527 (759)
T KOG0211|consen  451 PIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWL  527 (759)
T ss_pred             HHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhh
Confidence            9999999988776654444444555566678888888877778888888888888874321   2333333445555556


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccc
Q 008940          174 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD  253 (548)
Q Consensus       174 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~  253 (548)
                      .+....+++.|+..+..++.....  .-.....++.++....+++-..+...+.++..++.--.                
T Consensus       528 ~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g----------------  589 (759)
T KOG0211|consen  528 PDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG----------------  589 (759)
T ss_pred             hhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc----------------
Confidence            666668899999888888855441  11222345666666666556666666666654432100                


Q ss_pred             cchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCC
Q 008940          254 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN  333 (548)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~  333 (548)
                                         +.......++.+..+..+..+++|.+++..|..+...-..  ...+....|.+..+-.+.+
T Consensus       590 -------------------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~  648 (759)
T KOG0211|consen  590 -------------------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE--SVRDEEVLPLLETLSSDQE  648 (759)
T ss_pred             -------------------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch--HHHHHHHHHHHHHhccCcc
Confidence                               0123334678888888889999999999999888543221  1233455677777888889


Q ss_pred             CccchhhHHHHHHHhhh
Q 008940          334 PKQQLDGAVALFKLANK  350 (548)
Q Consensus       334 ~~v~~~a~~~L~~l~~~  350 (548)
                      .++|..|..+...+...
T Consensus       649 ~dvr~~a~~a~~~i~l~  665 (759)
T KOG0211|consen  649 LDVRYRAILAFGSIELS  665 (759)
T ss_pred             cchhHHHHHHHHHHHHH
Confidence            99999888877766553

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.93  E-value=0.013  Score=52.70  Aligned_cols=170  Identities=11%  Similarity=0.114  Sum_probs=116.2

Q ss_pred             HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC-----HHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHH
Q 008940           15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM   88 (548)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      .|+..+..++ .+|+.|..+.++.+.-.|-.+|+..+     +.+|..++.+++.+... +++....+.+.++++..++.
T Consensus        69 naLaLlQ~vA-shpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~  147 (262)
T PF04078_consen   69 NALALLQCVA-SHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI  147 (262)
T ss_dssp             HHHHHHHHHH-H-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred             HHHHHHHHHH-cChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence            5555666677 68999999999999888888887543     67899999999999973 45566777788999999999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHH------HHHHh-cCChHHHHH-hhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIK------KEVLA-AGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~------~~~~~-~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  160 (548)
                      ++.+++-.+..|..++..+-.++....      +.+.. ..++..++. +...+++.+.+...++-..|+ +++..+..+
T Consensus       148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs-dnprar~aL  226 (262)
T PF04078_consen  148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS-DNPRAREAL  226 (262)
T ss_dssp             HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT-TSTTHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc-cCHHHHHHH
Confidence            999999999999999999987755432      11111 123344443 445677889999999999996 456666655


Q ss_pred             HhcCChHHHHHhhC--------CCCHHHHHHHHHHHHHh
Q 008940          161 VQRGAVRPLIEMLQ--------SPDVQLREMSAFALGRL  191 (548)
Q Consensus       161 ~~~g~v~~L~~ll~--------~~~~~v~~~a~~~L~~l  191 (548)
                      .+  ++|.   .|+        .+|+.++.+-...+.|+
T Consensus       227 ~~--~LP~---~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  227 RQ--CLPD---QLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             HH--HS-G---GGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             HH--hCcH---HHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            43  3332   222        24777777776666665

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.91  E-value=0.055  Score=47.08  Aligned_cols=91  Identities=21%  Similarity=0.223  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCC-hHHHHHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA-LPTLILM   88 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-i~~Lv~l   88 (548)
                      |.+|..++.+++.|+...|..-+     ..++.+...|+++++.||..|+.+|..|...+     .+.-.|. +..++.+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHH
Confidence            67899999999999976655333     56788999999999999999999999998632     1222233 3778889


Q ss_pred             hccCChHHHHHHHHHHHHhhcC
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHS  110 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~  110 (548)
                      +.+++++++..|..++..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999765

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.0091  Score=50.01  Aligned_cols=90  Identities=21%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccc----------------------
Q 008940          388 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVD----------------------  445 (548)
Q Consensus       388 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~----------------------  445 (548)
                      +|+.|.+-..+.. .|..+++++...--......|+++++++.+|..+++|+|--+-+                      
T Consensus        13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~   91 (162)
T KOG1724|consen   13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE   91 (162)
T ss_pred             CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence            5788888777544 77787887753211112258999999999999999999873311                      


Q ss_pred             ---cchHhHHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 008940          446 ---VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI  478 (548)
Q Consensus       446 ---~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l  478 (548)
                         +....+.+++.||++|+++.|..+|+..+...+
T Consensus        92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi  127 (162)
T KOG1724|consen   92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI  127 (162)
T ss_pred             HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence               234578999999999999999999988876544

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.88  E-value=0.055  Score=48.48  Aligned_cols=169  Identities=23%  Similarity=0.252  Sum_probs=106.3

Q ss_pred             hcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh
Q 008940           36 MEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN  113 (548)
Q Consensus        36 ~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~  113 (548)
                      ....++.|+..+...  .+-+|..|..+|+.+..  +         +..+.+-+..+++..++++.+..++..+-..+.-
T Consensus        65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence            345688888888654  48899999999999884  2         3566666666777788888777777766322110


Q ss_pred             HH-------HHH-----HhcCChHHHHHhhhcCC-hH-HHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHH
Q 008940          114 IK-------KEV-----LAAGALQPVIGLLSSCC-SE-SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ  179 (548)
Q Consensus       114 ~~-------~~~-----~~~g~i~~L~~ll~~~~-~~-~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~  179 (548)
                      -+       ...     ...+-+..+-..+.+.+ +. -++.+...|.|+-  .+         ..+..+.+-+..++.-
T Consensus       134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~E---------eaI~al~~~l~~~Sal  202 (289)
T KOG0567|consen  134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TE---------EAINALIDGLADDSAL  202 (289)
T ss_pred             ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cH---------HHHHHHHHhcccchHH
Confidence            00       000     01112333333333332 22 2334444555541  12         2455666777777888


Q ss_pred             HHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC--CChhHHHHHHHHHHhcccCC
Q 008940          180 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       180 v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~  236 (548)
                      .|..++.++++|-..          ..++.|.+.|.+  .++-++..|+.+|+.++..+
T Consensus       203 frhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~  251 (289)
T KOG0567|consen  203 FRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADED  251 (289)
T ss_pred             HHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH
Confidence            999999999998533          357778877764  46889999999999998654

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.85  E-value=0.1  Score=49.99  Aligned_cols=206  Identities=15%  Similarity=0.148  Sum_probs=147.3

Q ss_pred             HHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhh-H---hhhcCChHHHHHHhc-cCChHHHHHHHHHHHH
Q 008940           32 TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN-Q---IVECNALPTLILMLR-SEDSAIHYEAVGVIGN  106 (548)
Q Consensus        32 ~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~---~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~  106 (548)
                      ..+...+.+..|+..|..-+.+.|..+.....++.......+. .   ......-+.+..++. -+++++-..+...|+.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence            3455668888889988888999999999999999875444432 1   111111223333333 2366777777778888


Q ss_pred             hhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhc---CChHHHHHhhCCCCHHHHHH
Q 008940          107 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREM  183 (548)
Q Consensus       107 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---g~v~~L~~ll~~~~~~v~~~  183 (548)
                      .+.. +.+.+.+.....+..+.+..+.++-++...|..++..+...++.........   ..+...-.++.+++--++..
T Consensus       150 c~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq  228 (335)
T PF08569_consen  150 CIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ  228 (335)
T ss_dssp             HTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred             HHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence            8766 6667788888889999999999999999999999998776666555555443   35667888899999999999


Q ss_pred             HHHHHHHhhcCCcchhh----hHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940          184 SAFALGRLAQDMHNQAG----IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       184 a~~~L~~l~~~~~~~~~----~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                      ++..|+.+-.+..+...    +.+...+..++.+|++++..++..|-.+.--+..++.-
T Consensus       229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence            99999999988877543    33445677889999999999999999998888776544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.80  E-value=0.0061  Score=46.55  Aligned_cols=92  Identities=15%  Similarity=0.090  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC
Q 008940          139 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN  218 (548)
Q Consensus       139 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~  218 (548)
                      ++.++.+|...+..-+... .-.-..++++++..+.++++.+|..|+.+|.|++..........-...++.|.+++.+.+
T Consensus         3 R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3445566666654433332 222246889999999999999999999999999976543322223356777888888999


Q ss_pred             hhHHHHHHHHHHhc
Q 008940          219 GSLQHNAAFALYGL  232 (548)
Q Consensus       219 ~~v~~~a~~~L~~l  232 (548)
                      +.|+..| ..|-++
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            9987554 555444

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=96.79  E-value=0.0055  Score=58.23  Aligned_cols=86  Identities=26%  Similarity=0.317  Sum_probs=69.8

Q ss_pred             cEEEEeCCeEEEchHHHHhccc--HHHHhhhcCCCCCCCCCc--eecCCCCHHHHHHHHHHHhcCccccchHhHHHHHH-
Q 008940          382 DVTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYREKDARD--IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR-  456 (548)
Q Consensus       382 Dv~~~~~~~~~~~h~~il~~~s--~~f~~~~~~~~~e~~~~~--i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~-  456 (548)
                      -|.+.|||+.|.-.+.-|+...  .+|.+++++.+.-.....  |-+ |=+|+.|..+|+|+-||+++++......++. 
T Consensus        12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhd   90 (465)
T KOG2714|consen   12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHD   90 (465)
T ss_pred             eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhh
Confidence            4788899999999999887655  799999998876554443  555 4599999999999999999997666555554 


Q ss_pred             HHHHhChHhHHH
Q 008940          457 AADQYLLEGLKR  468 (548)
Q Consensus       457 ~a~~~~~~~l~~  468 (548)
                      -|.||++..+.+
T Consensus        91 EA~fYGl~~llr  102 (465)
T KOG2714|consen   91 EAMFYGLTPLLR  102 (465)
T ss_pred             hhhhcCcHHHHH
Confidence            999999999876

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.77  E-value=0.011  Score=45.15  Aligned_cols=90  Identities=17%  Similarity=0.268  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhhh
Q 008940           55 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLS  132 (548)
Q Consensus        55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~  132 (548)
                      |..++.+|...+.+-+.......+. ++++++..+.++++++|..|+.+|.+++...   +..+..  ..+.+.|.+++.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence            4566777777766444443333333 8999999999999999999999999998543   333332  457788888888


Q ss_pred             cCChHHHHHHHHHHHHh
Q 008940          133 SCCSESQREAALLLGQF  149 (548)
Q Consensus       133 ~~~~~~~~~a~~~L~~l  149 (548)
                      +.++.|+..| ..|-++
T Consensus        79 D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRL   94 (97)
T ss_pred             CCchhHHHHH-HHHHHH
Confidence            8888876555 555544

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.70  E-value=0.00096  Score=52.29  Aligned_cols=75  Identities=16%  Similarity=0.228  Sum_probs=63.2

Q ss_pred             hhhhHHHHHHHH-hhhhhhhhhHHHHhhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          278 GRVLNHLLYLMR-VAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       278 ~~~~~~L~~ll~-~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      ..++..|+.+|. +.++.+..-||.-|+.++.. |.++..+-+.|+-..+.+|+.+++++||..|..++..+....|
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~w  118 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNNW  118 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS-
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence            458899999994 57888999999999999874 6688888888999999999999999999999999999876544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.69  E-value=0.091  Score=45.73  Aligned_cols=93  Identities=17%  Similarity=0.253  Sum_probs=74.4

Q ss_pred             ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHh
Q 008940           93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM  172 (548)
Q Consensus        93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l  172 (548)
                      ++.+|..++.+++.|+...+..-+     ..++.+...|.++++.+|+.|+.+|..|...+.-    -.+...+..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHH
Confidence            467899999999999876665433     3688999999999999999999999999754321    1122244778888


Q ss_pred             hCCCCHHHHHHHHHHHHHhhcC
Q 008940          173 LQSPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       173 l~~~~~~v~~~a~~~L~~l~~~  194 (548)
                      +.+++++++..|..++..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999866

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.076  Score=54.74  Aligned_cols=269  Identities=14%  Similarity=0.104  Sum_probs=129.1

Q ss_pred             HhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940           45 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  124 (548)
Q Consensus        45 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  124 (548)
                      .++.+....+..+|++++..+...+......     .+..|-.++.++...+|-.|.++|..+|...|..-.     -.=
T Consensus       252 s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-----~cN  321 (865)
T KOG1078|consen  252 SCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-----VCN  321 (865)
T ss_pred             HHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-----ccc
Confidence            3445566778888888888777532222111     566666777788888888888888888876553200     011


Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhc
Q 008940          125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN  204 (548)
Q Consensus       125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  204 (548)
                      .-|-.+..+.+..+...|..+|..-  +.+.....+.+  -+..++.=+.++..-+...+.   ..||...+.+..    
T Consensus       322 ~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rLm~--qI~~fv~disDeFKivvvdai---~sLc~~fp~k~~----  390 (865)
T KOG1078|consen  322 LDLESLITDSNRSIATLAITTLLKT--GTESSVDRLMK--QISSFVSDISDEFKIVVVDAI---RSLCLKFPRKHT----  390 (865)
T ss_pred             hhHHhhhcccccchhHHHHHHHHHh--cchhHHHHHHH--HHHHHHHhccccceEEeHHHH---HHHHhhccHHHH----
Confidence            1233344444444444444443332  33333333332  223333333333222333333   333322222111    


Q ss_pred             CChHHHHHhhcC-CChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHH--HHHHHHHHHh-----
Q 008940          205 GGLVPLLKLLDS-KNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCV--AKTLKRLEEK-----  275 (548)
Q Consensus       205 ~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~--~~~~~~~~~~-----  275 (548)
                      +.+.-|..+|.. +.-+.+.....++..+.. +++.+.....+- -+.          ..+|.  ..+...+..+     
T Consensus       391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~L-Cef----------IEDce~~~i~~rILhlLG~EgP  459 (865)
T KOG1078|consen  391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHL-CEF----------IEDCEFTQIAVRILHLLGKEGP  459 (865)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHH-HHH----------HHhccchHHHHHHHHHHhccCC
Confidence            112222233322 222333333333333322 222111110000 000          00000  0000111111     


Q ss_pred             ---hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          276 ---IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       276 ---~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                         ..+..+..+.+...-.+..+|.+|..+|.++....+    .......-.|.+.+.+.+.++|..|...|.++-.
T Consensus       460 ~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  460 KAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             CCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence               112345555555555788899999999999974332    2223456677888899999999999998888873

>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=96.61  E-value=0.036  Score=45.40  Aligned_cols=163  Identities=13%  Similarity=0.102  Sum_probs=100.9

Q ss_pred             ccEEEEeCCeEEEchHHHHhcccHHHH-hhhcCCC---CCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHHHH
Q 008940          381 SDVTFLVEGRRFYAHRICLLASSDAFR-AMFDGGY---REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR  456 (548)
Q Consensus       381 ~Dv~~~~~~~~~~~h~~il~~~s~~f~-~~~~~~~---~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~  456 (548)
                      .=|.+.|||..|...|.-|.--+.-|- .+.....   ...++.--.+-|=+|.-|..+|+|+-.|++-++.-.-..+++
T Consensus        21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~  100 (210)
T KOG2715|consen   21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE  100 (210)
T ss_pred             EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence            347778899999999999988885554 4444332   223333455556799999999999999999988855678999


Q ss_pred             HHHHhChHhHHHHHHHHHHhcCCH---hhHHHHHHHHHHcCcHHHHHHHHHHH-HHhHHHhhC-cchhHhchhhcHHHHH
Q 008940          457 AADQYLLEGLKRLCEYTIAQDISL---ENVSSMYELSEAFHAISLRHTCILYI-MEHFDKLST-RPGHSNLIQRIIPEIH  531 (548)
Q Consensus       457 ~a~~~~~~~l~~~c~~~l~~~l~~---~n~~~~~~~a~~~~~~~L~~~~~~~i-~~~~~~~~~-~~~f~~l~~~~~~~~~  531 (548)
                      -|.+|+++.|.++..+.+.+....   ..-..+|.. .+.....|...|-..- .+.|.+++. +..+.+--.+-..+..
T Consensus       101 EAefyn~~~li~likd~i~dRd~~~tq~~~k~vyrv-LqcqeeeltqmvStmsDgw~~~qlv~i~ssy~ny~~e~~~E~l  179 (210)
T KOG2715|consen  101 EAEFYNDPSLIQLIKDRIQDRDAMVTQEADKFVYRV-LQCQEEELTQMVSTMSDGWKIEQLVSISSSYPNYGDEKEEEFL  179 (210)
T ss_pred             hhhccCChHHHHHHHHHHHHHhhhccccchhHHHHH-HHHHHHHHHHHHhhccccHhHHHHhhccccCCCCCCcchHHHH
Confidence            999999999999998888764321   111112211 1223333433332221 134444432 2233333333455666


Q ss_pred             HHHHhhcCCCCCC
Q 008940          532 NYFAKALTKPNPH  544 (548)
Q Consensus       532 ~~l~~~~~~~~~~  544 (548)
                      ..+++.+.+.++.
T Consensus       180 cvvske~~~~g~~  192 (210)
T KOG2715|consen  180 CVVSKECHPNGSM  192 (210)
T ss_pred             HHHHhhcCCCccc
Confidence            6777766654443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.59  E-value=0.16  Score=50.58  Aligned_cols=248  Identities=17%  Similarity=0.178  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML   89 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll   89 (548)
                      +-+.-.+++++..++..+  ...... ...+..|-.+|+++....|..|+++|..++...|+. -..++.    -+-.++
T Consensus       278 emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k-v~vcN~----evEsLI  349 (898)
T COG5240         278 EMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK-VSVCNK----EVESLI  349 (898)
T ss_pred             hhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce-eeecCh----hHHHHh
Confidence            456778888888888544  111122 135667888899999999999999999999743332 112111    122334


Q ss_pred             ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH--------HHH
Q 008940           90 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV--------HIV  161 (548)
Q Consensus        90 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--------~~~  161 (548)
                      .+.+-.+...|+..|..-  +.++.-+.++.  .|+.++.=+++.=..+...|++.|+.+.   |..+.        .+.
T Consensus       350 sd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k~~s~l~FL~~~L~  422 (898)
T COG5240         350 SDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLF---PSKKLSYLDFLGSSLL  422 (898)
T ss_pred             hcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhC---cHHHHHHHHHHHHHHH
Confidence            444555555555444433  22222222222  2333333333322223333333333321   22111        122


Q ss_pred             hcCCh-------HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhH-------hcC--------ChHHHHHhhcCCCh
Q 008940          162 QRGAV-------RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA-------HNG--------GLVPLLKLLDSKNG  219 (548)
Q Consensus       162 ~~g~v-------~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-------~~~--------~l~~L~~ll~~~~~  219 (548)
                      +.|+.       +.+.+.++ .+|+.++.|+..|+....+.+.....+       ++|        .+..+.+-+--.+.
T Consensus       423 ~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~  501 (898)
T COG5240         423 QEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENN  501 (898)
T ss_pred             hcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhh
Confidence            23332       22222222 345566666666655555444322111       111        01122222222345


Q ss_pred             hHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940          220 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV  299 (548)
Q Consensus       220 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a  299 (548)
                      .++..|+.+|..++-+....                                   .....+...|-.++.+.|.++|..|
T Consensus       502 ivRsaAv~aLskf~ln~~d~-----------------------------------~~~~sv~~~lkRclnD~DdeVRdrA  546 (898)
T COG5240         502 IVRSAAVQALSKFALNISDV-----------------------------------VSPQSVENALKRCLNDQDDEVRDRA  546 (898)
T ss_pred             HHHHHHHHHHHHhccCcccc-----------------------------------ccHHHHHHHHHHHhhcccHHHHHHH
Confidence            56777777777776543221                                   0111234445567788889999999


Q ss_pred             HHHhhhccC
Q 008940          300 ALALAHLCS  308 (548)
Q Consensus       300 ~~aL~~l~~  308 (548)
                      ..+|.++-.
T Consensus       547 sf~l~~~~~  555 (898)
T COG5240         547 SFLLRNMRL  555 (898)
T ss_pred             HHHHHhhhh
Confidence            998888753

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.0037  Score=68.38  Aligned_cols=263  Identities=15%  Similarity=0.119  Sum_probs=149.5

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh-cCChHHHHHHhccCChHHHHHHHHHHHHhhc-CChhHHHHHH
Q 008940           42 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVL  119 (548)
Q Consensus        42 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~  119 (548)
                      .|..++.++++..|..++.-|..+..+-...+..... ..+...+.++|.+.|+-+|..|.+-|+-+-. ++...++.+ 
T Consensus       822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L-  900 (1702)
T KOG0915|consen  822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSL-  900 (1702)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHH-
Confidence            3445556788888887766555555432323332222 2466888999998888888888777665422 112333333 


Q ss_pred             hcCChHHHHHhhhcC---------ChHHH-------------HHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC-
Q 008940          120 AAGALQPVIGLLSSC---------CSESQ-------------REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-  176 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~---------~~~~~-------------~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~-  176 (548)
                          +..|+.-|..+         +.++.             -..-.=|++|+++       +.+...+=.++++.+++ 
T Consensus       901 ----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-------l~qPdLVYKFM~LAnh~A  969 (1702)
T KOG0915|consen  901 ----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-------LGQPDLVYKFMQLANHNA  969 (1702)
T ss_pred             ----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-------cCChHHHHHHHHHhhhhc
Confidence                33444333221         11111             1112234555543       12223445577777663 


Q ss_pred             CHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccch
Q 008940          177 DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF  256 (548)
Q Consensus       177 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~  256 (548)
                      ...-+.-|+..++.++.....+.+-.--..+|.|.++--+++..|+..-..+-..|..++...-                
T Consensus       970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v---------------- 1033 (1702)
T KOG0915|consen  970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV---------------- 1033 (1702)
T ss_pred             hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH----------------
Confidence            4456777888888887655332221222356777777778888887655554445555432211                


Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec-CCchHHHHHhhcCCCCc
Q 008940          257 IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPK  335 (548)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~  335 (548)
                                       ...-..++..|+.-|.+..+.+|+++|.||..|..+++.-+..-. ...+..+++.+++=.+.
T Consensus      1034 -----------------d~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs 1096 (1702)
T KOG0915|consen 1034 -----------------DEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES 1096 (1702)
T ss_pred             -----------------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             112234677788888889999999999999999988664321100 13455566666666667


Q ss_pred             cchhhHHHHHHHhh
Q 008940          336 QQLDGAVALFKLAN  349 (548)
Q Consensus       336 v~~~a~~~L~~l~~  349 (548)
                      ||.+|-.+...++.
T Consensus      1097 VR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1097 VREAADKAARALSK 1110 (1702)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77765544444443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.55  E-value=0.038  Score=52.91  Aligned_cols=204  Identities=14%  Similarity=0.116  Sum_probs=145.1

Q ss_pred             HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH-----HHHhcCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 008940          116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-----HIVQRGAVRPLIEMLQS-PDVQLREMSAFALG  189 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~  189 (548)
                      ..+...+.+..|+..|..-+-+.++.++.+..++.......+.     .+.. ..-+.+..++.. +++++...+...|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence            4556678899999999999999999999999999876544422     2221 212223333322 46678888888899


Q ss_pred             HhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc-ccCCcchHHHHHhcCcccccccchhhhhhhHHHHHH
Q 008940          190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT  268 (548)
Q Consensus       190 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~  268 (548)
                      .++........+.....+..+.+....++-++...|..++..+ ..++.....+....                      
T Consensus       149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n----------------------  206 (335)
T PF08569_consen  149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN----------------------  206 (335)
T ss_dssp             HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT----------------------
T ss_pred             HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH----------------------
Confidence            9988877777788888888899999999999999999999886 45555444443221                      


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc----eeeecCCchHHHHHhhcCCCCccchhhHHHH
Q 008940          269 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVAL  344 (548)
Q Consensus       269 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  344 (548)
                              -..++...-.+|.+++.-+|..++..|+.+..++.+.    +.+-+..-+..+..+|+++...+|..|..++
T Consensus       207 --------~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF  278 (335)
T PF08569_consen  207 --------YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVF  278 (335)
T ss_dssp             --------HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence                    1235667778899999999999999999998776654    4555556688899999999999999998877


Q ss_pred             HHHhhh
Q 008940          345 FKLANK  350 (548)
Q Consensus       345 ~~l~~~  350 (548)
                      --..-+
T Consensus       279 KvFVAN  284 (335)
T PF08569_consen  279 KVFVAN  284 (335)
T ss_dssp             HHHHH-
T ss_pred             HHHHhC
Confidence            666554

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.54  E-value=0.047  Score=45.42  Aligned_cols=124  Identities=13%  Similarity=0.168  Sum_probs=96.3

Q ss_pred             hhHhhhcCChHHHHHHhccCC------hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC--ChHHHHHHHH
Q 008940           73 KNQIVECNALPTLILMLRSED------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAAL  144 (548)
Q Consensus        73 ~~~~~~~g~i~~Lv~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~  144 (548)
                      +..+++.||+..|++++.++.      .++...++.++..|..++ ..-........|..++.+....  +..+.+.+..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            456778899999999998765      367788888888886553 2233445556777888887654  4778899999


Q ss_pred             HHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940          145 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       145 ~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                      .|-++...++.....+.+.=-++.|+..|+.++++++..+...+-.|....+.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999987776666676667789999999999999999999988888755543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.53  E-value=0.15  Score=52.36  Aligned_cols=244  Identities=16%  Similarity=0.172  Sum_probs=145.1

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML   89 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll   89 (548)
                      +..+--....+...|..+|.-+...     +..+..+|.+.++.++.+|+..|..++. +|.....     ....+++++
T Consensus       220 ~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~-----Aa~~~i~l~  288 (948)
T KOG1058|consen  220 DSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKA-----AASTYIDLL  288 (948)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHH-----HHHHHHHHH
Confidence            3445555566666665555544433     4567788888888899999888888885 4444333     234555555


Q ss_pred             c-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch-hHHHHHhcCChH
Q 008940           90 R-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVR  167 (548)
Q Consensus        90 ~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~  167 (548)
                      . .++..++.....-|..+...+..     +-.|.+-.++.+|++++-++++.+......|.+...- ....+.+..++.
T Consensus       289 ~kesdnnvklIvldrl~~l~~~~~~-----il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~k  363 (948)
T KOG1058|consen  289 VKESDNNVKLIVLDRLSELKALHEK-----ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMK  363 (948)
T ss_pred             HhccCcchhhhhHHHHHHHhhhhHH-----HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHh
Confidence            4 34566777777667666522221     1234666788899999999999999887777654221 111111111111


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcC
Q 008940          168 PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG  247 (548)
Q Consensus       168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~  247 (548)
                      .--. =.+++...|..-..++..++...+.-    .+..++.+++.+.+.++......+..+......-++.        
T Consensus       364 T~~~-e~d~~~~yRqlLiktih~cav~Fp~~----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L--------  430 (948)
T KOG1058|consen  364 THNE-ESDDNGKYRQLLIKTIHACAVKFPEV----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL--------  430 (948)
T ss_pred             cccc-ccccchHHHHHHHHHHHHHhhcChHH----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH--------
Confidence            1000 01234467888888898888654432    2346788999998888765555544444433221111        


Q ss_pred             cccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCCc
Q 008940          248 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD  311 (548)
Q Consensus       248 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~  311 (548)
                                                   ...++..|+.-+.. .+..+-..|+|.++..|.+..
T Consensus       431 -----------------------------r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  431 -----------------------------RASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             -----------------------------HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence                                         11245555555544 667778888999988876543

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.038  Score=53.89  Aligned_cols=263  Identities=16%  Similarity=0.066  Sum_probs=135.1

Q ss_pred             cCChHHHHHHh----ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940           79 CNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS  154 (548)
Q Consensus        79 ~g~i~~Lv~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  154 (548)
                      .|.+..++..+    .+++..++..|++.|++.++..|+-.......-....+-.+....+.+|...+..+|..+..   
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~---  329 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE---  329 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH---
Confidence            35555554444    37788999999999999998866544443333223333444555668888888888877752   


Q ss_pred             hhHHHHHhcC---ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch--hhhHh--cCChHHHHHhhcCCChhHHHHHHH
Q 008940          155 DCKVHIVQRG---AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ--AGIAH--NGGLVPLLKLLDSKNGSLQHNAAF  227 (548)
Q Consensus       155 ~~~~~~~~~g---~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~  227 (548)
                      .....-+..+   +.-.+..+..+.++++|..+...++.|+......  ..+.+  .+...+++-.+.++++.+. .||.
T Consensus       330 ~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr  408 (533)
T KOG2032|consen  330 KASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACR  408 (533)
T ss_pred             hhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHH
Confidence            2222222223   3334666678889999999999999988655442  22221  1334445555666777653 5666


Q ss_pred             HHHhcccCCcchHHHHHhcCcccccccch-hhh--hhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhh
Q 008940          228 ALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQ--ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA  304 (548)
Q Consensus       228 ~L~~l~~~~~~~~~~~~~g~i~~L~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~  304 (548)
                      .....+...-.++..  .+.++...+... ..+  ...-|....  .+..-+-.-.......++.+.-+.+|..+..--.
T Consensus       409 ~~~~~c~p~l~rke~--~~~~q~~ld~~~~~~q~Fyn~~c~~L~--~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~  484 (533)
T KOG2032|consen  409 SELRTCYPNLVRKEL--YHLFQESLDTDMARFQAFYNQWCIQLN--HIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTT  484 (533)
T ss_pred             HHHHhcCchhHHHHH--HHHHhhhhHHhHHHHHHHHHHHHHHHh--hhCHHHHHHHHHhchhheecchHHHHHHHHHHHH
Confidence            666665432222222  111121111000 000  000011000  0000000001111112222233455665555544


Q ss_pred             hccCCCc--cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          305 HLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       305 ~l~~~~~--~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                      ++..+-.  .+...-.......|..+..++-++++..|..++..+..
T Consensus       485 ~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  485 RSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            4443211  11111112234566667788899999999998887754

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.46  E-value=0.11  Score=53.94  Aligned_cols=201  Identities=17%  Similarity=0.161  Sum_probs=142.8

Q ss_pred             ChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHH-HhhccCcchhhHhhhcCChHHHHHHhccC-ChHHHHHHHHHH
Q 008940           27 NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR-TLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVI  104 (548)
Q Consensus        27 ~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L  104 (548)
                      ...-+...+..|+...|+++...+.+..+.....+|. .+......      ....++.+...+... ...-...++.++
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            3445566777899999999999888888888888887 33221111      112344444444322 222345688999


Q ss_pred             HHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh-cCChHHHHHhhCCCCHHHHHH
Q 008940          105 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREM  183 (548)
Q Consensus       105 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~~~~~v~~~  183 (548)
                      .||++.+...|+.+.+.-.++.+-.++...++..++.++..+.||..+.--....+++ ...++.....+...+......
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            9999988888888988888888888888889999999999999998664444445555 445666666666667777788


Q ss_pred             HHHHHHHhhcCCcc-hh-hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940          184 SAFALGRLAQDMHN-QA-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA  233 (548)
Q Consensus       184 a~~~L~~l~~~~~~-~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~  233 (548)
                      +++++..++....+ +. ......+...+..++.+.++.++...+..+.|+.
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~  698 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF  698 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence            88888866655544 23 3444567778889999999999998888877743

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.44  E-value=0.0051  Score=48.30  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=61.1

Q ss_pred             CchHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhc
Q 008940           39 GIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH  109 (548)
Q Consensus        39 ~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~  109 (548)
                      .+..|+++| .+.|+.+..-||.=|+.++...|..+..+-+.|+=..++.++.++|++|+..|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            467889999 45578888999999999999889998888889999999999999999999999999987753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=96.43  E-value=0.012  Score=50.67  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=67.2

Q ss_pred             EEEEeCCeEEEchHHHHhccc--HHHHhhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCccc-cchHhHHHHHHH
Q 008940          383 VTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVD-VTLDIAQDLLRA  457 (548)
Q Consensus       383 v~~~~~~~~~~~h~~il~~~s--~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~-~~~~~~~~ll~~  457 (548)
                      |.+.++|+.|...+.-+--+-  ....+||.+.-.  +.+..-..+-|-+|..|+++|.|+-.|.+. .+.-++.++++.
T Consensus        11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLee   90 (302)
T KOG1665|consen   11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEE   90 (302)
T ss_pred             heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHH
Confidence            566778877776665555443  357788875422  222333444466999999999999999986 456789999999


Q ss_pred             HHHhChHhHHHHHHH
Q 008940          458 ADQYLLEGLKRLCEY  472 (548)
Q Consensus       458 a~~~~~~~l~~~c~~  472 (548)
                      |+||++-.|++..+.
T Consensus        91 Arff~i~sL~~hle~  105 (302)
T KOG1665|consen   91 ARFFQILSLKDHLED  105 (302)
T ss_pred             hhHHhhHhHHhHHhh
Confidence            999999999999877

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.074  Score=54.45  Aligned_cols=134  Identities=19%  Similarity=0.178  Sum_probs=90.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHh-hcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940          165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFI  243 (548)
Q Consensus       165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  243 (548)
                      .=+.+-+++.+.||-+|.....++.---....      ..+++..|+.. ..+.+++|++.|+.+|+-++..+..     
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-----  588 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-----  588 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh-----
Confidence            33445556677788888776655543211111      12345555555 4567899999999999988754432     


Q ss_pred             HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCCccceeeecCCch
Q 008940          244 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGL  322 (548)
Q Consensus       244 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i  322 (548)
                                                          .++..+.+|.. -++.||..++.+|+-.|.+...+.      ++
T Consensus       589 ------------------------------------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai  626 (929)
T KOG2062|consen  589 ------------------------------------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AI  626 (929)
T ss_pred             ------------------------------------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HH
Confidence                                                34555666654 689999999999999888777653      46


Q ss_pred             HHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          323 ELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       323 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ..|-.+..++..-||..|+.++.-+.-..
T Consensus       627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  627 NLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             HHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence            66777777877788888887777765443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.082  Score=54.25  Aligned_cols=289  Identities=17%  Similarity=0.158  Sum_probs=138.1

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHH---------------
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAV---------------  101 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~---------------  101 (548)
                      ..+|.+...|++..+.||+.|+-++..+-.. .+   .+. .++-+.+-.+|. +.|+..++.|.               
T Consensus       134 pl~p~IracleHrhsYVRrNAilaifsIyk~-~~---~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl  208 (948)
T KOG1058|consen  134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FE---HLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYL  208 (948)
T ss_pred             hhHHHHHHHHhCcchhhhhhhheeehhHHhh-hh---hhc-CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHH
Confidence            5667788899999999999999888877652 11   000 112222222222 23333333333               


Q ss_pred             -------------------HHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940          102 -------------------GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ  162 (548)
Q Consensus       102 -------------------~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  162 (548)
                                         ..+...+..++.-+     ...|..+..+|.+.++.++..|+.+|.+++.. |.....   
T Consensus       209 ~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~---  279 (948)
T KOG1058|consen  209 LSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKA---  279 (948)
T ss_pred             HhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHH---
Confidence                               33333332222221     12355566666666666666666666666422 221111   


Q ss_pred             cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc--h
Q 008940          163 RGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN--V  239 (548)
Q Consensus       163 ~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~  239 (548)
                        ....+++++-. ++-.++...+--|..+.   .....+ -.|.+-.++++|.+++-+++..++.....|+.....  .
T Consensus       280 --Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~i-l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvedi  353 (948)
T KOG1058|consen  280 --AASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKI-LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDI  353 (948)
T ss_pred             --HHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHH-HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHH
Confidence              22333444322 22233333333333333   111111 124455578888999999999999988888754432  1


Q ss_pred             HHHHHhcCcccccccchhhhhhhHHHHHHHHHHHH---hhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC-CCcccee
Q 008940          240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE---KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTI  315 (548)
Q Consensus       240 ~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~-~~~~~~~  315 (548)
                      ..+.+..+...--......+.-.....+++.....   -..+.+++.|+..+.+.++..-...+..+..... .|..|  
T Consensus       354 v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr--  431 (948)
T KOG1058|consen  354 VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR--  431 (948)
T ss_pred             HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH--
Confidence            22211111110000000000000111111111111   1234577888888877666544444444333332 23333  


Q ss_pred             eecCCchHHHHHhhc-CCCCccchhhHHHHHHHhhhc
Q 008940          316 FIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       316 ~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~  351 (548)
                         ...+..|++-+. -...++-+.|+|.++.-+...
T Consensus       432 ---~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~  465 (948)
T KOG1058|consen  432 ---ASIIEKLLETFPQIRSSKICRGALWILGEYCEGL  465 (948)
T ss_pred             ---HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence               234445554443 245567778889888877654

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=96.33  E-value=0.013  Score=40.63  Aligned_cols=51  Identities=18%  Similarity=0.354  Sum_probs=41.3

Q ss_pred             CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhc
Q 008940          388 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT  441 (548)
Q Consensus       388 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt  441 (548)
                      ||+.|.+.+.+.. .|+.++.|+.+...+..  .|++++++..+++.+++|++.
T Consensus         9 Dg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~   59 (62)
T PF03931_consen    9 DGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH   59 (62)
T ss_dssp             TSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred             CCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence            6899999998766 89999999975433222  799999999999999999863

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.26  E-value=0.77  Score=49.30  Aligned_cols=216  Identities=15%  Similarity=0.148  Sum_probs=134.3

Q ss_pred             HHHHhcCCchHHHHhhccC-----CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc----cCC----hHHHH
Q 008940           32 TRVRMEGGIPPLVELLEFT-----DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SED----SAIHY   98 (548)
Q Consensus        32 ~~i~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~----~~~----~~v~~   98 (548)
                      ..+.+.||+..+++++.+-     ........+..|...+. -+.||+.+.+.|+++.|+..+.    .+.    ..+-+
T Consensus       111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E  189 (802)
T PF13764_consen  111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE  189 (802)
T ss_pred             HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence            4566789999999999752     34555566777777776 6999999999999999998775    333    57777


Q ss_pred             HHHHHHHHhhcCChhHHHHH----HhcC--------ChHHHHHhhhc----CChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940           99 EAVGVIGNLVHSSPNIKKEV----LAAG--------ALQPVIGLLSS----CCSESQREAALLLGQFAATDSDCKVHIVQ  162 (548)
Q Consensus        99 ~a~~~L~~l~~~~~~~~~~~----~~~g--------~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  162 (548)
                      ..+.++..+...........    ....        -+..+++.+.+    .++.+....+++|..|+.++++....+++
T Consensus       190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~  269 (802)
T PF13764_consen  190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE  269 (802)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence            77777777754322110000    1111        25566666654    35778899999999999888776665554


Q ss_pred             cCChHHHHHhh--CCC-CHHHHHHHHHHHHHhhcC----C---cchhhhHhcCChHHHHHhhcCCC--------hh----
Q 008940          163 RGAVRPLIEML--QSP-DVQLREMSAFALGRLAQD----M---HNQAGIAHNGGLVPLLKLLDSKN--------GS----  220 (548)
Q Consensus       163 ~g~v~~L~~ll--~~~-~~~v~~~a~~~L~~l~~~----~---~~~~~~~~~~~l~~L~~ll~~~~--------~~----  220 (548)
                        .+.+.+++=  ... .++- ...+.+++.++..    .   .-+..+.+.|.+...+++|...-        ++    
T Consensus       270 --~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~  346 (802)
T PF13764_consen  270 --HFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF  346 (802)
T ss_pred             --HHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence              122222211  111 1111 2235555555532    2   12567788888888887775321        11    


Q ss_pred             ----HHHHHHHHHHhcccCCcchHHHHHhcCcccc
Q 008940          221 ----LQHNAAFALYGLADNEDNVADFIRVGGVQKL  251 (548)
Q Consensus       221 ----v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L  251 (548)
                          ....++..|..|+......+..+..++++.+
T Consensus       347 l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~l  381 (802)
T PF13764_consen  347 LSRPSLPYILRLLRGLARGHEPTQLLIAEQLLPLL  381 (802)
T ss_pred             hcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHH
Confidence                2345778888888877666666666666544

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.24  E-value=0.045  Score=47.74  Aligned_cols=114  Identities=13%  Similarity=0.115  Sum_probs=82.2

Q ss_pred             ccCChHHHHHHHHHHHHhhcCChhHHHHHH---------------hcCChHHHHHhhhc------CChHHHHHHHHHHHH
Q 008940           90 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVL---------------AAGALQPVIGLLSS------CCSESQREAALLLGQ  148 (548)
Q Consensus        90 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---------------~~g~i~~L~~ll~~------~~~~~~~~a~~~L~~  148 (548)
                      .+++......++.+|.|++.....++..+-               ....+..|+.++..      ....-....+..|.|
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            345666777888999999877555432222               12256777777755      224466788899999


Q ss_pred             hhcCCchhHHHHHhc--CC--hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhc
Q 008940          149 FAATDSDCKVHIVQR--GA--VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN  204 (548)
Q Consensus       149 l~~~~~~~~~~~~~~--g~--v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  204 (548)
                      +++. +..|..+.+.  +.  +..|+....+.+..-|.-++.+|.|+|.+.+....+...
T Consensus        85 lS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~  143 (192)
T PF04063_consen   85 LSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD  143 (192)
T ss_pred             hcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence            9755 7888888764  34  778888888887777789999999999988877666653

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.22  E-value=0.24  Score=47.20  Aligned_cols=150  Identities=19%  Similarity=0.157  Sum_probs=97.9

Q ss_pred             CChHHHH-HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc-hhH
Q 008940           80 NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCK  157 (548)
Q Consensus        80 g~i~~Lv-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~  157 (548)
                      +.++.|+ +.+.++++.+|+.++.+|+-.+.-+.+....     .++.+.+.++.+++.++..|+.++..+..... ...
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            3454444 7888899999999999999998766544322     46678888877788999999999988774322 111


Q ss_pred             HH-------HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHH-hhc---CCChhHHHHHH
Q 008940          158 VH-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLD---SKNGSLQHNAA  226 (548)
Q Consensus       158 ~~-------~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-ll~---~~~~~v~~~a~  226 (548)
                      ..       .....+++.+...+.+.+++++..++..++.|........   ....+..|+- +.+   ..+..++..-.
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~  177 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS  177 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence            11       1123567788888888999999999999999875543322   0122333322 222   22355655555


Q ss_pred             HHHHhcccCCc
Q 008940          227 FALYGLADNED  237 (548)
Q Consensus       227 ~~L~~l~~~~~  237 (548)
                      ..+-.++....
T Consensus       178 ~Ffp~y~~s~~  188 (298)
T PF12719_consen  178 VFFPVYASSSP  188 (298)
T ss_pred             HHHHHHHcCCH
Confidence            56666665443

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.21  E-value=0.16  Score=49.45  Aligned_cols=175  Identities=13%  Similarity=0.084  Sum_probs=104.7

Q ss_pred             hhHHHHHHHHHHHHHhhhChhh-HHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      .-+-+..|+.-|..+...+... -.... ..++..+++.|.+ .++..+..|++.|..++...+..-..-. +-.+..++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst-E~ai~K~L  377 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST-EIAICKVL  377 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH-HHHHHHHH
Confidence            3455667777666665443211 11111 1345677888877 7788999999999999984332211111 12455555


Q ss_pred             HHhccCChHHHHHHH-HHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           87 LMLRSEDSAIHYEAV-GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                      +.-.+.+.++...|. .++.-+++..|..        .|..+..++...+.+....++..+..++..-+.-.-...-..+
T Consensus       378 eaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~di  449 (516)
T KOG2956|consen  378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDI  449 (516)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhh
Confidence            655666555554444 4455566665543        2334455555555555555565666665332211111222468


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940          166 VRPLIEMLQSPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~  193 (548)
                      .|.+++...+.+..||+.+..||..+..
T Consensus       450 aP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  450 APCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            8889999999999999999999998863

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.15  E-value=0.081  Score=54.83  Aligned_cols=240  Identities=14%  Similarity=0.122  Sum_probs=148.4

Q ss_pred             cCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHH-HhhcCChhHHHHHHhcCChHHHHHhhhcCCh-HHHHHHHHH
Q 008940           68 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG-NLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALL  145 (548)
Q Consensus        68 ~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~  145 (548)
                      ...+-+...++.|+...|+.+.....+.-+.....+|. .+..  +..+    ....++.+...++.... --...++.+
T Consensus       492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~a  565 (748)
T KOG4151|consen  492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF--PGER----SYEVVKPLDSALHNDEKGLENFEALEA  565 (748)
T ss_pred             hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC--CCCc----hhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence            34566677888999999999998777787777777776 3321  1111    01345555555543321 123557789


Q ss_pred             HHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhh-hHh-cCChHHHHHhhcCCChhHHH
Q 008940          146 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG-IAH-NGGLVPLLKLLDSKNGSLQH  223 (548)
Q Consensus       146 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~-~~~l~~L~~ll~~~~~~v~~  223 (548)
                      +.||++.+...+..+.+...++.+-.++..+++..+..++..+.||...+..-.. +.+ ...++.....+.........
T Consensus       566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l  645 (748)
T KOG4151|consen  566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL  645 (748)
T ss_pred             hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence            9999999888888898888888888888889999999999999999987655332 233 34455555555555555666


Q ss_pred             HHHHHHHhcccCCcc-hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHH
Q 008940          224 NAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA  302 (548)
Q Consensus       224 ~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~a  302 (548)
                      .+++++..+....++ +..+.+                                -......++.++.+.++++|...+..
T Consensus       646 A~a~a~a~I~sv~~n~c~~~~~--------------------------------~~~~~e~~~~~i~~~~~~~qhrgl~~  693 (748)
T KOG4151|consen  646 AGAGALAAITSVVENHCSRILE--------------------------------LLEWLEILVRAIQDEDDEIQHRGLVI  693 (748)
T ss_pred             hccccccchhhcchhhhhhHHH--------------------------------hhcchHHHHHhhcCchhhhhhhhhhh
Confidence            666666655443322 221110                                11234556677788888899888888


Q ss_pred             hhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940          303 LAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF  345 (548)
Q Consensus       303 L~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  345 (548)
                      +.|+... .+....+......+.+..+-.-.-...++.++.+|.
T Consensus       694 ~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~  737 (748)
T KOG4151|consen  694 ILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCLS  737 (748)
T ss_pred             hhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence            8885432 222233333444444444333333333444444443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.11  E-value=0.057  Score=49.06  Aligned_cols=102  Identities=20%  Similarity=0.265  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      .+.....|+++|.-++--+|..+..+.+...+..++.+|.. ..+.++..++.+|..+.-.++.|...+-+.+|+..++.
T Consensus       104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            34456678899999998899999999999999999999954 56899999999999888889999999999999999999


Q ss_pred             HhccC--ChHHHHHHHHHHHHhhcC
Q 008940           88 MLRSE--DSAIHYEAVGVIGNLVHS  110 (548)
Q Consensus        88 ll~~~--~~~v~~~a~~~L~~l~~~  110 (548)
                      ++++.  +.+++..++..|.-....
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHcc
Confidence            99854  667888888777666543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.05  E-value=0.02  Score=55.36  Aligned_cols=223  Identities=17%  Similarity=0.134  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh----ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHH
Q 008940           52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  127 (548)
Q Consensus        52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  127 (548)
                      +..+..+|.++.++.....++-..    |--.....++    .+++.-++..|.+.++-+.-+..-..+......+...+
T Consensus       363 ~Tl~~s~Cdals~i~~~~f~~lpn----~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~i  438 (728)
T KOG4535|consen  363 PTLQASACDALSSILPEAFSNLPN----DRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAI  438 (728)
T ss_pred             CCchhHHHHHHhhcCchhhcCCCC----cchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHH
Confidence            456677777777776421111100    0001111111    12334466677777766655533333333344455566


Q ss_pred             HHhhhcCChHHHHHHHHHHHHhhc----CCchhHHHH--HhcCChHHHHHhhC---CCCHHHHHHHHHHHHHhhcCCcch
Q 008940          128 IGLLSSCCSESQREAALLLGQFAA----TDSDCKVHI--VQRGAVRPLIEMLQ---SPDVQLREMSAFALGRLAQDMHNQ  198 (548)
Q Consensus       128 ~~ll~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~--~~~g~v~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~  198 (548)
                      ...+.++.-..+.++.|+++|++.    +.|..+..-  ...-.+..++....   .....|+.++.++|+|+.+.-+.-
T Consensus       439 l~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i  518 (728)
T KOG4535|consen  439 LMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPI  518 (728)
T ss_pred             HHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHh
Confidence            666666667789999999999872    112211111  11112223333222   135579999999999998543311


Q ss_pred             h----hhHhcCChHHHH-HhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHH
Q 008940          199 A----GIAHNGGLVPLL-KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE  273 (548)
Q Consensus       199 ~----~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~  273 (548)
                      .    .....+.+..+. ...-.....|+.++|.+++||-.++...-+  ..                            
T Consensus       519 ~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq--~~----------------------------  568 (728)
T KOG4535|consen  519 EKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ--TA----------------------------  568 (728)
T ss_pred             hhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc--CC----------------------------
Confidence            1    111112222211 222245678999999999999887754110  00                            


Q ss_pred             HhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCC
Q 008940          274 EKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP  309 (548)
Q Consensus       274 ~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~  309 (548)
                       -+...+++.|..++.+ .+-.+|.+|+.+|..-...
T Consensus       569 -~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  569 -PWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             -CchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence             1223367788888876 8899999999999766543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.01  E-value=0.12  Score=54.43  Aligned_cols=190  Identities=12%  Similarity=0.074  Sum_probs=123.3

Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH--------HHHh----cCChHHHHHhhhcCChHHHHHHHHHHHH
Q 008940           81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK--------EVLA----AGALQPVIGLLSSCCSESQREAALLLGQ  148 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--------~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~  148 (548)
                      +...++++|.+  +++-..+..++.-+.++++..+.        .+.+    ...+|.+++.....+...+..-..+|.+
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            34456666654  45555666677666666554321        1222    3578899988886666777777888888


Q ss_pred             hhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC---hhHHHHH
Q 008940          149 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN---GSLQHNA  225 (548)
Q Consensus       149 l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~~~a  225 (548)
                      +...-|.....---....|.|++.|.-+|..+|..+..++.-+....+.-..-.-.-.++.++.+=.+.+   ..++..|
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~A  973 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDA  973 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHH
Confidence            8765454222112245778888889999999999999999888765544222222234555666555544   5688899


Q ss_pred             HHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhh
Q 008940          226 AFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA  304 (548)
Q Consensus       226 ~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~  304 (548)
                      +.+|..|.+ -+...-.                                 -....++..|.+.|.++..-+|.+|.++=.
T Consensus       974 LqcL~aL~~~~P~~~l~---------------------------------~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  974 LQCLNALTRRLPTKSLL---------------------------------SFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             HHHHHHHhccCCCcccc---------------------------------cccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            999999987 3322111                                 122347788888888888889999887644


Q ss_pred             h
Q 008940          305 H  305 (548)
Q Consensus       305 ~  305 (548)
                      +
T Consensus      1021 ~ 1021 (1030)
T KOG1967|consen 1021 N 1021 (1030)
T ss_pred             h
Confidence            3

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=95.95  E-value=0.078  Score=53.19  Aligned_cols=175  Identities=14%  Similarity=0.134  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhh-ccCCHHHHHHHHHHHHHhhc----cCcchhhHhhhcCChHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAF----KNDENKNQIVECNALPT   84 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~g~i~~   84 (548)
                      +..+..+++.++.+...-+... .+  ...+..+...+ ...+...+..++..+.-++.    .+...     ....+..
T Consensus       204 ~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~-----~~~~~~~  275 (415)
T PF12460_consen  204 EFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL-----ATELLDK  275 (415)
T ss_pred             hHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch-----HHHHHHH
Confidence            5667777888887774311111 00  12222333333 23334444455444433332    11111     1124666


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhhcCChhH-------------HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhc
Q 008940           85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNI-------------KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  151 (548)
Q Consensus        85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  151 (548)
                      |+.++.+  +++...+++.+.-+..+.++.             |+.+.. ..+|.+++..+..+.+.+.....+|..+..
T Consensus       276 L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~  352 (415)
T PF12460_consen  276 LLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSHLLK  352 (415)
T ss_pred             HHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHHHHh
Confidence            7777765  778899999999998774432             223322 357888888877777778888889999987


Q ss_pred             CCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940          152 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       152 ~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  195 (548)
                      +-|.....-.-..++|.+++.|..++++++..++.+|..+..+.
T Consensus       353 ~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  353 NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            76654433333568999999999999999999999999998776

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.94  E-value=0.061  Score=45.57  Aligned_cols=147  Identities=20%  Similarity=0.184  Sum_probs=99.2

Q ss_pred             ChHHHHHHhc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940           81 ALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  158 (548)
Q Consensus        81 ~i~~Lv~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  158 (548)
                      -++.++..|.  ...+++|..+.-++..+-   +..++... .-+-+.+-..+...+.+-...+..++..+-...++.-.
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            3556666665  357789999998888883   32223322 22333444455554555667777888888766665555


Q ss_pred             HH-HhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc-CCChh-HHHHHHHHHHhc
Q 008940          159 HI-VQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGS-LQHNAAFALYGL  232 (548)
Q Consensus       159 ~~-~~~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~-v~~~a~~~L~~l  232 (548)
                      .+ ...|+++.+++++.  .++..++..++.+|..-|.+...|..+.+ .+++.|-.+.+ ++++. ++..|+-.|..+
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            44 45789999999998  77888999999999988877666655544 77888999996 44555 777777777653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.94  E-value=0.9  Score=46.39  Aligned_cols=87  Identities=20%  Similarity=0.246  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc
Q 008940           12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS   91 (548)
Q Consensus        12 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~   91 (548)
                      ..+-|+..|......-|+....     ++..++.++++++..||..|++.|-.+|.++++....     +++.|+++|.+
T Consensus        38 ~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~t  107 (556)
T PF05918_consen   38 EKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQT  107 (556)
T ss_dssp             HHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHhc
Confidence            3444444444444433333332     2335555555555555555555555555544443333     24455555555


Q ss_pred             CChHHHHHHHHHHHHhh
Q 008940           92 EDSAIHYEAVGVIGNLV  108 (548)
Q Consensus        92 ~~~~v~~~a~~~L~~l~  108 (548)
                      +++.-...+-.+|..+.
T Consensus       108 dd~~E~~~v~~sL~~ll  124 (556)
T PF05918_consen  108 DDPVELDAVKNSLMSLL  124 (556)
T ss_dssp             --HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence            55444444444444443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.90  E-value=0.14  Score=48.92  Aligned_cols=171  Identities=16%  Similarity=0.154  Sum_probs=113.8

Q ss_pred             CCchHHH-HhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCCh-hHH
Q 008940           38 GGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIK  115 (548)
Q Consensus        38 g~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~  115 (548)
                      +.+..|+ ..++++++.+|..|+++|+-.+--+.+....     .++.+...+..++..++..|+.++..+..... ..-
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            4455554 6778899999999999999999755533332     46677777777799999999999998865322 111


Q ss_pred             HH-------HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh-C---CCCHHHHHHH
Q 008940          116 KE-------VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-Q---SPDVQLREMS  184 (548)
Q Consensus       116 ~~-------~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll-~---~~~~~v~~~a  184 (548)
                      +.       ......+..+.+.+.+.+++++..++..++.|...+.-..    ...++..|+-+- .   .+++.+++.-
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence            11       1223567788888888899999999999999874432211    012333333332 2   2456788877


Q ss_pred             HHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC
Q 008940          185 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK  217 (548)
Q Consensus       185 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~  217 (548)
                      ...+-..+..............++.+..+.+..
T Consensus       177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            777778887666544555556677776666543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.88  E-value=0.21  Score=52.23  Aligned_cols=182  Identities=17%  Similarity=0.138  Sum_probs=120.0

Q ss_pred             HHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCC
Q 008940           44 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA  123 (548)
Q Consensus        44 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~  123 (548)
                      +..+.++...++-.|+.-|..+.+ +.+....+...+++...++.|++.|+-+-..|++.+..||.-.+        ...
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~i  803 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDI  803 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhh
Confidence            334456668899999999999997 45777777788999999999999999999899998888865433        357


Q ss_pred             hHHHHHhh-hcCC---hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh
Q 008940          124 LQPVIGLL-SSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA  199 (548)
Q Consensus       124 i~~L~~ll-~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  199 (548)
                      +|.+...- +..+   ++.+-....++.++...-.+.... ...-.+..++.-.++++...|..++..++++|.-...+.
T Consensus       804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~-y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v  882 (982)
T KOG4653|consen  804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK-YKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV  882 (982)
T ss_pred             HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH-HHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence            78887743 3221   344444445555554321111111 112456777788888888889999999999995433211


Q ss_pred             hhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhcccC
Q 008940          200 GIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       200 ~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~  235 (548)
                      .-.-...+..++.+.. ++.+-+++.|+..+..+-..
T Consensus       883 sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  883 SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence            1011123334455554 45678889999888887653

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.85  E-value=0.6  Score=44.52  Aligned_cols=181  Identities=22%  Similarity=0.197  Sum_probs=108.0

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHh--cCCchHHHHhhccCCHHHHHHHHHHHHHhhcc--CcchhhHhhhcCChHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPT   84 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~   84 (548)
                      +...|+.++..+.++....... ..+.+  .-.+..+.+.++.+..+-+..|++++.-++-.  .......+.+. ..+.
T Consensus        56 ~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~  133 (309)
T PF05004_consen   56 SSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPV  133 (309)
T ss_pred             CHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHH
Confidence            3567888888888887543322 22221  13466777778877777788888888877652  23444555554 6778


Q ss_pred             HHHHhccCC--hHHHHHHHHHHHHhhc---CChhHHHHHHhcCChHHH--HHhhhc----------CChHHHHHHHHHHH
Q 008940           85 LILMLRSED--SAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPV--IGLLSS----------CCSESQREAALLLG  147 (548)
Q Consensus        85 Lv~ll~~~~--~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L--~~ll~~----------~~~~~~~~a~~~L~  147 (548)
                      |.+.+.+..  ..+|..++.+|+-++.   ..++.....++  .+..+  ....+.          +++.+...|+.+.+
T Consensus       134 L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~  211 (309)
T PF05004_consen  134 LKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA  211 (309)
T ss_pred             HHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence            888887654  4556666666666543   22221111111  12211  111111          12456777766666


Q ss_pred             HhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940          148 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       148 ~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  193 (548)
                      -|...-+.....-.-...++.|..+|.+++.+||..|..+|.-|..
T Consensus       212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            6655544432222224578999999999999999999998887753

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.71  E-value=0.54  Score=44.87  Aligned_cols=190  Identities=16%  Similarity=0.104  Sum_probs=113.2

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh--cCChHHHHHHhccCChHHHHHHHHHHHHhhcC--ChhHHHH
Q 008940           42 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHS--SPNIKKE  117 (548)
Q Consensus        42 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~  117 (548)
                      ..+..+.+.....|..++..+.++... ......+.+  ..+++.+.+.++.+..+-+..|+++++-++..  ...-...
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~-~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSS-RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            345555666788999999999988863 222233322  23577778888877766677787777777543  1122234


Q ss_pred             HHhcCChHHHHHhhhcCC--hHHHHHHHHHHHHhhcCCchhHHHHH-hcCChH--HHHHhhCC----------CCHHHHH
Q 008940          118 VLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIV-QRGAVR--PLIEMLQS----------PDVQLRE  182 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~v~--~L~~ll~~----------~~~~v~~  182 (548)
                      +.+ ...|.|.+.+.+..  ...+..++.+|+-++.........+. -...++  +.....+.          +++.+..
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~  204 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA  204 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence            443 46788888887755  44556666666665532211111111 012333  12222222          2346777


Q ss_pred             HHHHHHHHhhcCCcch-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940          183 MSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA  233 (548)
Q Consensus       183 ~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~  233 (548)
                      .|+.+-+-|...-+.. ..-.-...++.|..+|.+.+.+||..|..+|+-|-
T Consensus       205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            7777766666444431 11122346888999999999999999988887663

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.69  E-value=2.1  Score=46.01  Aligned_cols=306  Identities=12%  Similarity=0.043  Sum_probs=155.3

Q ss_pred             hhHHHHHHHHHHHHHhh---hChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            9 VNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~---~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      .+.-...|++.+++++.   .....+. ..+.=.+..+...++++---+|.+||+.++..+.-+-.....+  ..+++..
T Consensus       431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t  507 (1010)
T KOG1991|consen  431 NPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELT  507 (1010)
T ss_pred             ChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHH
Confidence            34445677777777773   2222222 2223345566667777788899999999999995222222222  2356677


Q ss_pred             HHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhhhcCChHHHHHHHH-HHHHhhcCCchhHHHHH
Q 008940           86 ILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQREAAL-LLGQFAATDSDCKVHIV  161 (548)
Q Consensus        86 v~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~  161 (548)
                      .++|. +.+-.|+..|+-+|..+.++.+.....+..  .+.++.|+++.+..+.+....+.. .++..+..-.+....+.
T Consensus       508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~  587 (1010)
T KOG1991|consen  508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC  587 (1010)
T ss_pred             HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            77777 778889999999999998876655343332  234555566665544443333333 22333211111111122


Q ss_pred             hcCChHHHHHhhCC---C---CHHHHHHHHHHHHHhh---cCCcchhhhH---hcCChHHHHHhhcCCChhHHHHHHHHH
Q 008940          162 QRGAVRPLIEMLQS---P---DVQLREMSAFALGRLA---QDMHNQAGIA---HNGGLVPLLKLLDSKNGSLQHNAAFAL  229 (548)
Q Consensus       162 ~~g~v~~L~~ll~~---~---~~~v~~~a~~~L~~l~---~~~~~~~~~~---~~~~l~~L~~ll~~~~~~v~~~a~~~L  229 (548)
                       ......+.+++..   .   +.+-...|.++|..+.   ..-++...+.   +...++.+-..|++.-.++-+.++..+
T Consensus       588 -q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~  666 (1010)
T KOG1991|consen  588 -QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIV  666 (1010)
T ss_pred             -HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             2344556666653   1   2223344444444433   2222222221   112233344455555556666666665


Q ss_pred             HhcccCC-cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940          230 YGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  308 (548)
Q Consensus       230 ~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~  308 (548)
                      .++.... +....+                                   =+.++.+...+....-+.-....-+|.|+..
T Consensus       667 ~~~t~~~~~Isp~m-----------------------------------W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt  711 (1010)
T KOG1991|consen  667 SSLTFLSKEISPIM-----------------------------------WGLLELILEVFQDDGIDYFTDMMPALHNYVT  711 (1010)
T ss_pred             hhhhhhhcccCHHH-----------------------------------HHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence            5554321 111111                                   1245555566666666666777778887764


Q ss_pred             CCcc--c-eeeecCCchHHHHHhhcCCCCcc--chhhHHHHHHHhhhccc
Q 008940          309 PDDQ--R-TIFIDGGGLELLLGLLGSTNPKQ--QLDGAVALFKLANKATT  353 (548)
Q Consensus       309 ~~~~--~-~~~~~~~~i~~L~~ll~~~~~~v--~~~a~~~L~~l~~~~~~  353 (548)
                      ....  . ......-........+.+.+...  ...|++.+..+.-...+
T Consensus       712 ~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg  761 (1010)
T KOG1991|consen  712 YGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG  761 (1010)
T ss_pred             eCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence            3221  1 11111112333344454433222  44577777666655443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.69  E-value=0.085  Score=53.54  Aligned_cols=129  Identities=19%  Similarity=0.202  Sum_probs=86.3

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcC
Q 008940           43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG  122 (548)
Q Consensus        43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  122 (548)
                      ++...+ ++...+..|+..+.....+=|+..+.     ++..+++++.+++..||..|++.|-.+|.++++....+    
T Consensus        28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv----   97 (556)
T PF05918_consen   28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV----   97 (556)
T ss_dssp             HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH----
T ss_pred             HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH----
Confidence            444444 57889999999999988765665554     68889999999999999999999999999877665443    


Q ss_pred             ChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC---CCCHHHHHHHHHHHHH
Q 008940          123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---SPDVQLREMSAFALGR  190 (548)
Q Consensus       123 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~---~~~~~v~~~a~~~L~~  190 (548)
                       ...|+++|.++++.....+-.+|..+...++.        +.+..+...+.   ++++.+|+.++..|..
T Consensus        98 -aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen   98 -ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             -HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence             45899999988877777777777777654443        23344444443   4677889988877754

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.64  E-value=0.19  Score=45.78  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh
Q 008940           52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL  130 (548)
Q Consensus        52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  130 (548)
                      ......|++.|.-++--++..+..+.+...+..++++|. ...+.++..++.+|..+..+++.+.+.+-+.+|+..++.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            334566888998888878999999999999999999995 5678999999999999999999998999999999999999


Q ss_pred             hhcCC--hHHHHHHHHHHHHhh
Q 008940          131 LSSCC--SESQREAALLLGQFA  150 (548)
Q Consensus       131 l~~~~--~~~~~~a~~~L~~l~  150 (548)
                      +++..  .+++-+++..|.-..
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHH
Confidence            98754  667777777665554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.50  E-value=0.02  Score=33.20  Aligned_cols=28  Identities=21%  Similarity=0.481  Sum_probs=25.0

Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhhc
Q 008940           82 LPTLILMLRSEDSAIHYEAVGVIGNLVH  109 (548)
Q Consensus        82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~  109 (548)
                      ++.++++++++++++|..|+.+|+.++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.45  E-value=0.028  Score=32.60  Aligned_cols=29  Identities=28%  Similarity=0.549  Sum_probs=25.6

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940          166 VRPLIEMLQSPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  194 (548)
                      +|.+++++++++++||..|+.+|+.++..
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.40  E-value=0.05  Score=50.90  Aligned_cols=88  Identities=23%  Similarity=0.251  Sum_probs=64.5

Q ss_pred             ccEEEEeC-CeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHHHHHHH
Q 008940          381 SDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAAD  459 (548)
Q Consensus       381 ~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~a~  459 (548)
                      .|+.+... |+.|.|||..++++|.+|..-+..-+.  ...+|.-..+-+.+|..|++|+|-..-.+-+....+|+.+..
T Consensus       150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~  227 (516)
T KOG0511|consen  150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEV  227 (516)
T ss_pred             cchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhh
Confidence            46777664 788999999999999988654443222  233565567788999999999998744444555688999999


Q ss_pred             HhChHhHHHHH
Q 008940          460 QYLLEGLKRLC  470 (548)
Q Consensus       460 ~~~~~~l~~~c  470 (548)
                      +|+++.+-...
T Consensus       228 kF~~e~l~~~~  238 (516)
T KOG0511|consen  228 KFSKEKLSLEI  238 (516)
T ss_pred             hccHHHhHHHH
Confidence            99887765443

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.27  E-value=2.3  Score=41.79  Aligned_cols=150  Identities=9%  Similarity=0.141  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHhhhChhhH---HHHHh-cCCchHHHHhhccCC---HHHHHHHHHHHHHhhccCcchhhHhhhcCChH
Q 008940           11 SVIRRAADAITNLAHENSSIK---TRVRM-EGGIPPLVELLEFTD---TKVQRAAAGALRTLAFKNDENKNQIVECNALP   83 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~---~~i~~-~g~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   83 (548)
                      ...+.-++.+..+.+.+....   .-+++ ......|...+++..   +.+-..|+..+..+....|.....+.+.|.++
T Consensus        75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~  154 (379)
T PF06025_consen   75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID  154 (379)
T ss_pred             HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence            445555566666664122222   22333 333455556666553   78889999999999987888888899999999


Q ss_pred             HHHHHhc-c---CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-------hHHHHHHHHHHHHhhcC
Q 008940           84 TLILMLR-S---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-------SESQREAALLLGQFAAT  152 (548)
Q Consensus        84 ~Lv~ll~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~~a~~~L~~l~~~  152 (548)
                      .+++.+. .   ++.++....-.+|+.||-++.. .+.+.+.+.++.+++++.+++       .+........+-.|.++
T Consensus       155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH  233 (379)
T PF06025_consen  155 AFLDAITAKGILPSSEVLTSLPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRH  233 (379)
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHcc
Confidence            9999887 3   3678888888889999877444 577888899999999987642       12333444456666666


Q ss_pred             CchhHHHHH
Q 008940          153 DSDCKVHIV  161 (548)
Q Consensus       153 ~~~~~~~~~  161 (548)
                      .|..+..++
T Consensus       234 ~p~Lk~~i~  242 (379)
T PF06025_consen  234 HPSLKPDII  242 (379)
T ss_pred             CHHHHHHHH
Confidence            666555443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.24  E-value=0.29  Score=53.20  Aligned_cols=222  Identities=11%  Similarity=0.075  Sum_probs=131.9

Q ss_pred             chhhhhHHHHHHHHHHHHHhhhChhhHHHHHh--cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-chhhHhhhcCC
Q 008940            5 CSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNA   81 (548)
Q Consensus         5 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~   81 (548)
                      ..++++.+|.++-+.|..++.. +........  ..+-..|..-+++.....+..++.+|..+....+ ++...+.+. +
T Consensus       663 e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~-I  740 (1176)
T KOG1248|consen  663 ENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL-I  740 (1176)
T ss_pred             hccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH-H
Confidence            4456789999999999999954 333322221  0122344445556667788888888888876444 444444333 4


Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcC------ChHHHHHhhhcC----ChHHHHHHHHHHHHhhc
Q 008940           82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG------ALQPVIGLLSSC----CSESQREAALLLGQFAA  151 (548)
Q Consensus        82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g------~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~  151 (548)
                      .+.++.+ ++.+...++.+..+|..++..     ....+.|      .+..++..+.-.    ...+....+.++..+..
T Consensus       741 ~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~  814 (1176)
T KOG1248|consen  741 PEVILSL-KEVNVKARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ  814 (1176)
T ss_pred             HHHHHhc-ccccHHHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence            4444444 888889999999999888720     1111111      344444444322    22222222344444432


Q ss_pred             CCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHH
Q 008940          152 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY  230 (548)
Q Consensus       152 ~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  230 (548)
                      ..........-.++++.+.-.|.++.++++..|.+.+.-++...+. +-.-.....++.++.++++....++..+-..|-
T Consensus       815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle  894 (1176)
T KOG1248|consen  815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE  894 (1176)
T ss_pred             HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            2222222222245667777778899999999999999999866543 322223345667777777777777777766776


Q ss_pred             hccc
Q 008940          231 GLAD  234 (548)
Q Consensus       231 ~l~~  234 (548)
                      .|.+
T Consensus       895 kLir  898 (1176)
T KOG1248|consen  895 KLIR  898 (1176)
T ss_pred             HHHH
Confidence            6654

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=95.20  E-value=1.7  Score=43.62  Aligned_cols=72  Identities=24%  Similarity=0.231  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec-CCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          280 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       280 ~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ++|.|+.-.+..+.+.+...+.+|.++..+-+.....-+ ...+|.|++-|+.++++++..+..+|..+..+.
T Consensus       324 ~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  324 VLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            567777777766666888889999999876442222122 246899999999999999999999999988764

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.19  E-value=0.061  Score=46.92  Aligned_cols=127  Identities=18%  Similarity=0.130  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcchhhhHhc----------------CChHHHHHhhcC------CChhHHHHHHHHHHhc
Q 008940          175 SPDVQLREMSAFALGRLAQDMHNQAGIAHN----------------GGLVPLLKLLDS------KNGSLQHNAAFALYGL  232 (548)
Q Consensus       175 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~l~~L~~ll~~------~~~~v~~~a~~~L~~l  232 (548)
                      +++......++..|.|++........+.+.                ..+..|+..+..      ....-..+.+.++.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            344456777888899998877665533321                235556666644      1234556888999999


Q ss_pred             ccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCcc
Q 008940          233 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ  312 (548)
Q Consensus       233 ~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~  312 (548)
                      +..++.+..+.+..-                             ..+.+..|+.++.+.+..-|..++.+|.|+|...+.
T Consensus        86 S~~~~gR~~~l~~~~-----------------------------~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~  136 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQR-----------------------------YDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS  136 (192)
T ss_pred             cCCHHHHHHHhCchh-----------------------------hhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH
Confidence            999988888754320                             001478888999989888899999999999998776


Q ss_pred             ceeeecC---CchHHHHHhhc
Q 008940          313 RTIFIDG---GGLELLLGLLG  330 (548)
Q Consensus       313 ~~~~~~~---~~i~~L~~ll~  330 (548)
                      ...++..   +.+|.|+--+.
T Consensus       137 H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen  137 HEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHhcCchhhhhHHHHHhhcc
Confidence            5555553   45565555554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.25  Score=50.75  Aligned_cols=156  Identities=21%  Similarity=0.207  Sum_probs=99.7

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH-hccCChHHHHHHHHHHHHhhcCChhHHHHHHh
Q 008940           42 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA  120 (548)
Q Consensus        42 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  120 (548)
                      .+-+++.+.|+-+|...+.++..--.+..       +.+++..|+.. ..+.+.+||+.|+-+|+-++..+++.      
T Consensus       523 lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~------  589 (929)
T KOG2062|consen  523 LIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ------  589 (929)
T ss_pred             HHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh------
Confidence            33456677778787777665543322211       23456667766 56789999999999999888776663      


Q ss_pred             cCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--cc
Q 008940          121 AGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HN  197 (548)
Q Consensus       121 ~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~  197 (548)
                         .|..+.+|. +.++.||.-++.+|+-.|.+. ..+.      ++..|-.+..+...-||+.|+-++.-+....  ..
T Consensus       590 ---~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~  659 (929)
T KOG2062|consen  590 ---LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL  659 (929)
T ss_pred             ---chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence               666777775 567889999999999888663 3222      4455556666666678888888777665222  22


Q ss_pred             hhhhHhcCChHHHHHhhcCCChhHH
Q 008940          198 QAGIAHNGGLVPLLKLLDSKNGSLQ  222 (548)
Q Consensus       198 ~~~~~~~~~l~~L~~ll~~~~~~v~  222 (548)
                      +..+  .+....+.+.+.+++.+..
T Consensus       660 ~pkv--~~frk~l~kvI~dKhEd~~  682 (929)
T KOG2062|consen  660 CPKV--NGFRKQLEKVINDKHEDGM  682 (929)
T ss_pred             CchH--HHHHHHHHHHhhhhhhHHH
Confidence            2222  1334456777776655443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.05  E-value=1  Score=48.25  Aligned_cols=155  Identities=15%  Similarity=0.119  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc------c--CCHHHHHHHHHHHHHhhcc--CcchhhHhhhcCChHH
Q 008940           15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE------F--TDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPT   84 (548)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~------~--~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~   84 (548)
                      .|+..+..++...  .+..+  .|.++-+++.+.      .  .++.....|++.++++++-  .+..-+...+.=++..
T Consensus       391 Aa~~~l~~~~~KR--~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h  466 (1010)
T KOG1991|consen  391 AALDFLTTLVSKR--GKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH  466 (1010)
T ss_pred             HHHHHHHHHHHhc--chhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence            4555666666321  11111  256677777776      2  2467788899999998851  1222223333335667


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHh-
Q 008940           85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQ-  162 (548)
Q Consensus        85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-  162 (548)
                      +++.++++---+|..|+|+++.++.-.-.  +...-..++.....+|. +.+-.|+..|+.||..+.+..+.....+.. 
T Consensus       467 VfP~f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h  544 (1010)
T KOG1991|consen  467 VFPEFQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH  544 (1010)
T ss_pred             hhHhhcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence            77888888889999999999999842211  11222235666777777 677889999999999998776644332211 


Q ss_pred             -cCChHHHHHhhCC
Q 008940          163 -RGAVRPLIEMLQS  175 (548)
Q Consensus       163 -~g~v~~L~~ll~~  175 (548)
                       .+.++.|+.+.+.
T Consensus       545 vp~~mq~lL~L~ne  558 (1010)
T KOG1991|consen  545 VPPIMQELLKLSNE  558 (1010)
T ss_pred             hhHHHHHHHHHHHh
Confidence             3456666666665

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=94.98  E-value=0.86  Score=49.19  Aligned_cols=301  Identities=14%  Similarity=0.101  Sum_probs=164.7

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchh---hHhhh---c
Q 008940            6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK---NQIVE---C   79 (548)
Q Consensus         6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~---~   79 (548)
                      +++.+.+++.++.+|..|+...|+    ....+.+++++....+.+...|.....+.+.+........   ..+.+   .
T Consensus       554 ~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~  629 (1133)
T KOG1943|consen  554 CHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA  629 (1133)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh
Confidence            567789999999999999965444    2335778899988888888888777777766664211111   00111   1


Q ss_pred             C---ChHHHHH-HhccC-ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940           80 N---ALPTLIL-MLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS  154 (548)
Q Consensus        80 g---~i~~Lv~-ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  154 (548)
                      |   +++.+.. -+..+ ..-.+...+..+.+++..........+..+....+.+.+.+++ .++..+.+++..+++..-
T Consensus       630 ~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~  708 (1133)
T KOG1943|consen  630 GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYV  708 (1133)
T ss_pred             hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHH
Confidence            1   1222211 11111 2345556667777776554544455555555556666665555 788889999999885321


Q ss_pred             hhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcc---hhhhHhcCChHHHHHhhcCC-ChhHHHHHHHHH
Q 008940          155 DCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHN---QAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFAL  229 (548)
Q Consensus       155 ~~~~~~~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L  229 (548)
                      ..-. ......+...+..+.+. +..++.-...+++.+....-.   +..+     ...++...... .++-+...+.++
T Consensus       709 ~~d~-~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l-----c~~~l~~~p~d~~a~aR~~~V~al  782 (1133)
T KOG1943|consen  709 KADE-GEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL-----CKLVLELLPSDAWAEARQQNVKAL  782 (1133)
T ss_pred             hcCc-hhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH-----HHHHhccCcccccHHHHHHHHHHH
Confidence            1100 00112445566666654 556676666667766532211   1111     22233333333 455566666666


Q ss_pred             HhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh------h--hhhhhhhHHH
Q 008940          230 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV------A--EKGVQRRVAL  301 (548)
Q Consensus       230 ~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~------~--~~~~~~~a~~  301 (548)
                      ..++....   .....                             ..-..+...|++.|++      +  ..-+|++|..
T Consensus       783 ~~v~~~~~---~~~~~-----------------------------~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~  830 (1133)
T KOG1943|consen  783 AHVCKTVT---SLLFS-----------------------------ESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMK  830 (1133)
T ss_pred             HHHHHHHH---Hhhcc-----------------------------ccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHH
Confidence            66653221   00000                             0112356677777765      1  2468999999


Q ss_pred             HhhhccCCCccceeeecCCchHHHHH-hhcCCCCcc---chhhHHHHHHHhhh
Q 008940          302 ALAHLCSPDDQRTIFIDGGGLELLLG-LLGSTNPKQ---QLDGAVALFKLANK  350 (548)
Q Consensus       302 aL~~l~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v---~~~a~~~L~~l~~~  350 (548)
                      ++..+...-.. ..+.+.+.+..++. +++..-+++   +.-|+.++..+..+
T Consensus       831 al~~~~~~l~~-p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~  882 (1133)
T KOG1943|consen  831 ALSSLLDTLSS-PKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH  882 (1133)
T ss_pred             HHHhhhhhhcC-cccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence            98877543222 23444555544433 666544444   55677777766654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.92  E-value=2.1  Score=39.03  Aligned_cols=136  Identities=24%  Similarity=0.215  Sum_probs=90.8

Q ss_pred             hHHHH-hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           41 PPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        41 ~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      +.|+. +-+..+++.+...+.+|..++.++..+...     +++.|..+...+..+.+..+.+.+..+...++...    
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence            34444 445678999999999999999853122222     46667777777777777888888888876544331    


Q ss_pred             hcCChHHHHHh--h------hcC--ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHH
Q 008940          120 AAGALQPVIGL--L------SSC--CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFAL  188 (548)
Q Consensus       120 ~~g~i~~L~~l--l------~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll-~~~~~~v~~~a~~~L  188 (548)
                        +.+..++..  +      .+.  ..+.....+.++..+|...++     ....+++.+..++ ++.++.++..++.++
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence              233333333  0      111  133444445678888877665     2234678888888 788888999999999


Q ss_pred             HHhh
Q 008940          189 GRLA  192 (548)
Q Consensus       189 ~~l~  192 (548)
                      ..+|
T Consensus       147 ~~Lc  150 (234)
T PF12530_consen  147 APLC  150 (234)
T ss_pred             HHHH
Confidence            9999

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.73  E-value=0.33  Score=41.15  Aligned_cols=147  Identities=21%  Similarity=0.274  Sum_probs=97.0

Q ss_pred             CCchHHHHhhc--cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHH
Q 008940           38 GGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK  115 (548)
Q Consensus        38 g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  115 (548)
                      ..+..++..|.  ...+++|..+.-++..+-   +..++...+. +-+.+-..+..++.+-...+..++..+--..++..
T Consensus         3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence            34555666554  356788988888888884   2222222221 23344445555555577778888888877777765


Q ss_pred             HHHH-hcCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC-CCCHH-HHHHHHHHHHH
Q 008940          116 KEVL-AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQ-LREMSAFALGR  190 (548)
Q Consensus       116 ~~~~-~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~-~~~~~-v~~~a~~~L~~  190 (548)
                      ..+. ..|.++.++.++.  ..+..+...++.+|..-|.+ ...|. .....+++.|-...+ +++.. ++..|+-+|..
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            5555 5788999999998  67788888888888877643 55554 444577899999996 45555 78877777654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.66  E-value=0.26  Score=53.42  Aligned_cols=148  Identities=17%  Similarity=0.181  Sum_probs=113.8

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ..|++|..|.-+|+.++.-+.+...     ..+|.|+..++ ++++.+|..+..+++.++-.-|..    ++. ..+.|.
T Consensus       935 sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl----ie~-~T~~Ly 1004 (1251)
T KOG0414|consen  935 SDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL----IEP-WTEHLY 1004 (1251)
T ss_pred             CCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcccc----cch-hhHHHH
Confidence            4489999999999999854444333     45778888887 889999999999999988632221    222 566788


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      .-|.++++.+|+.|+.+|.+|...     +.+--.|.++.+..++.+++++++..|-..+..|+....    .+.  +++
T Consensus      1005 ~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n----~iy--nlL 1073 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGN----TIY--NLL 1073 (1251)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhccc----chh--hhc
Confidence            888999999999999999999753     455567999999999999999999999888888865431    222  467


Q ss_pred             HHHHHhhCCC
Q 008940          167 RPLIEMLQSP  176 (548)
Q Consensus       167 ~~L~~ll~~~  176 (548)
                      |-++..|.+.
T Consensus      1074 Pdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1074 PDILSRLSNG 1083 (1251)
T ss_pred             hHHHHhhccC
Confidence            7777777664

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.66  E-value=4  Score=43.42  Aligned_cols=158  Identities=16%  Similarity=0.178  Sum_probs=91.7

Q ss_pred             HHhcCChHHHHHhhCCC--------CHHHHHHHHHHHHHhhcCCcchhhhHhc--------CChHHHHHhhc----CCCh
Q 008940          160 IVQRGAVRPLIEMLQSP--------DVQLREMSAFALGRLAQDMHNQAGIAHN--------GGLVPLLKLLD----SKNG  219 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~l~~L~~ll~----~~~~  219 (548)
                      +.+.+++..++++..-+        ..++...|+.+|+-+..-+..+.++...        .|+..++..-.    -.++
T Consensus       597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp  676 (1516)
T KOG1832|consen  597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP  676 (1516)
T ss_pred             HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence            45556677777766431        2356677777777777777766665432        13444433322    1268


Q ss_pred             hHHHHHHHHHHhcccCC-cchHHHHHh-cCcccccccchh-hhhhhHHHHHHHHHHHH-hhhhhhhHHHHHHHHhhh---
Q 008940          220 SLQHNAAFALYGLADNE-DNVADFIRV-GGVQKLQDGEFI-VQATKDCVAKTLKRLEE-KIHGRVLNHLLYLMRVAE---  292 (548)
Q Consensus       220 ~v~~~a~~~L~~l~~~~-~~~~~~~~~-g~i~~L~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~ll~~~~---  292 (548)
                      +++..|+.+|.|+...+ ++....+.. |--.- -...+. .++...-....+.++.. +...+.+..|+++++-..   
T Consensus       677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g-~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t  755 (1516)
T KOG1832|consen  677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSG-DRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT  755 (1516)
T ss_pred             HHHHHHHhhhheeecCCCCcchhhhhhccccCC-CccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence            99999999999996544 554433221 11000 000000 01111111223344433 345678999999998743   


Q ss_pred             --hhhhhhHHHHhhhccCCCccceeeec
Q 008940          293 --KGVQRRVALALAHLCSPDDQRTIFID  318 (548)
Q Consensus       293 --~~~~~~a~~aL~~l~~~~~~~~~~~~  318 (548)
                        ..+|.-||.+|.-|++++..|+++.+
T Consensus       756 ~aD~IRalAc~~L~GLaR~~tVrQIltK  783 (1516)
T KOG1832|consen  756 TADCIRALACRVLLGLARDDTVRQILTK  783 (1516)
T ss_pred             cHHHHHHHHHHHHhccccCcHHHHHHHh
Confidence              35789999999999999987765444

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.62  E-value=0.54  Score=49.37  Aligned_cols=214  Identities=13%  Similarity=0.066  Sum_probs=131.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      ..+.++..++..|..+.+ +...+..+...+++...+..|++.|+-+-..|++.+..+|.-        ....+++.+.+
T Consensus       739 ~qvpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~il~dL~e  809 (982)
T KOG4653|consen  739 DQVPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDILPDLSE  809 (982)
T ss_pred             CcccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhhHHHHHH
Confidence            345788899999999994 446677788889999999999999999999999999999973        22346666666


Q ss_pred             Hh-cc---CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 008940           88 ML-RS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR  163 (548)
Q Consensus        88 ll-~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  163 (548)
                      .- +.   ..++.+..+-.++.+++..-.+....... -.+..++....+++...|..++.+++++|.-........+ .
T Consensus       810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~  887 (982)
T KOG4653|consen  810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-H  887 (982)
T ss_pred             HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-H
Confidence            33 21   12344555556666665433332222222 3456667777777777888889999999843221111111 2


Q ss_pred             CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcch-hhhHhc---CChHHHHHhhc-CCChhHHHHHHHHHHhc
Q 008940          164 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQ-AGIAHN---GGLVPLLKLLD-SKNGSLQHNAAFALYGL  232 (548)
Q Consensus       164 g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~---~~l~~L~~ll~-~~~~~v~~~a~~~L~~l  232 (548)
                      .++..++.+.+. +.+.+|..|+-.+..+-.+-... -.+...   .....+..+.. ++++.++.+++.++-.+
T Consensus       888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            345555555554 56778899988888877544321 111111   11222333333 33455666666665544

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=94.46  E-value=1.4  Score=46.73  Aligned_cols=223  Identities=13%  Similarity=0.069  Sum_probs=143.8

Q ss_pred             chhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChH
Q 008940            5 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP   83 (548)
Q Consensus         5 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   83 (548)
                      ..+..|...-++...+...+...+.+...+.  -.+...+..+. +..+.++..|++++...+.  .. .-.-...++++
T Consensus       459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~-vl~~~~p~ild  533 (1005)
T KOG2274|consen  459 VYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VK-VLLSLQPMILD  533 (1005)
T ss_pred             ccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ce-eccccchHHHH
Confidence            3455666666888888877654333333222  22333444443 3457788888888887773  11 11112346788


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHHHHH
Q 008940           84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIV  161 (548)
Q Consensus        84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  161 (548)
                      .|+++....+.++......+|+..+..+++. ....+..+.|.+..+..  +++|.+...+-.++..++.. ..+. .-.
T Consensus       534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~-g~m  610 (1005)
T KOG2274|consen  534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANY-GPM  610 (1005)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhh-cch
Confidence            8888888888999999999999999887774 44455667777777654  35566666666666666531 1111 122


Q ss_pred             hcCChHHHHHhhCCCC----HHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhh-cCCChhHHHHHHHHHHhcccC
Q 008940          162 QRGAVRPLIEMLQSPD----VQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       162 ~~g~v~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~  235 (548)
                      ....+|.++..|..++    +.....++..|..+.++.++ -.......+++++.+.. .+++.+....+..+|..+...
T Consensus       611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            3458899999998765    56777888888877766544 33344445677777665 456677778888888887543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.33  E-value=2.3  Score=44.47  Aligned_cols=237  Identities=14%  Similarity=0.110  Sum_probs=128.9

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhc
Q 008940           84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR  163 (548)
Q Consensus        84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  163 (548)
                      .+.++.++.+..+|...-.++..++.-.++.  .    -+...+.+-+...++..+..|.++|..+..+.          
T Consensus        68 ~~tKlfQskd~~LRr~vYl~Ikels~isedv--i----ivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~----------  131 (865)
T KOG1078|consen   68 AITKLFQSKDVSLRRMVYLAIKELSKISEDV--I----IVTSSLMKDMTGKEDLYRAAAIRALCSIIDGT----------  131 (865)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHhhccccchhh--h----hhhHHHHhhccCCCcchhHHHHHHHHhhcCcc----------
Confidence            4456667888899999888888887554432  1    12344554455556667888888888876332          


Q ss_pred             CChHHHHHhh----CCCCHHHHHHH-HHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940          164 GAVRPLIEML----QSPDVQLREMS-AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       164 g~v~~L~~ll----~~~~~~v~~~a-~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                       .++..-..+    -+.++.+...| +..++-+......-..     ..........+.+.-+|.+|++.|..+-.++.-
T Consensus       132 -m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkr-----w~neiqea~~s~~~m~QyHalglLyqirk~drl  205 (865)
T KOG1078|consen  132 -MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKR-----WANEVQEAVNSDNIMVQYHALGLLYQIRKNDRL  205 (865)
T ss_pred             -hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHH-----HHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHH
Confidence             222222222    23444443332 2233333322211100     111122233344457788888888888554321


Q ss_pred             -hHHHHHhcCcccccccchhhhhhhHHHHH--HHHHHHHh--hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc
Q 008940          239 -VADFIRVGGVQKLQDGEFIVQATKDCVAK--TLKRLEEK--IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR  313 (548)
Q Consensus       239 -~~~~~~~g~i~~L~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~  313 (548)
                       ...++..     +.. ...-.....|...  ..+.+.+.  ......+.+=.++.+....+..+|++++.++..-....
T Consensus       206 a~sklv~~-----~~~-~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~  279 (865)
T KOG1078|consen  206 AVSKLVQK-----FTR-GSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE  279 (865)
T ss_pred             HHHHHHHH-----Hcc-ccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh
Confidence             1111111     111 0001112333211  11111111  12235555566777789999999999999995432211


Q ss_pred             eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          314 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       314 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                        +.  -.+..|.-++.++..-.|.+|...|..+|....
T Consensus       280 --l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P  314 (865)
T KOG1078|consen  280 --LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP  314 (865)
T ss_pred             --cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence              11  167888888999988999999999999988653

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=94.28  E-value=1.7  Score=42.54  Aligned_cols=172  Identities=15%  Similarity=0.123  Sum_probs=110.5

Q ss_pred             CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHh--cCChHHH
Q 008940           51 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPV  127 (548)
Q Consensus        51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L  127 (548)
                      ..+-+..|+.-|..+...+....+.-.-..++..+++.|.+ .+...+..|+++|..++...+..   +.+  +-+|..+
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~---l~DstE~ai~K~  376 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR---LFDSTEIAICKV  376 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh---hhchHHHHHHHH
Confidence            35566777775555544333333332222367788888987 78899999999999998765432   222  2356677


Q ss_pred             HHhhhcCChHHHHHHHH-HHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhh-hHhcC
Q 008940          128 IGLLSSCCSESQREAAL-LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG-IAHNG  205 (548)
Q Consensus       128 ~~ll~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~  205 (548)
                      ++.-.+..+++...|.. ++..+++..|..        .+..+..++...|......++..+..++..-..-.- ..-..
T Consensus       377 Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~d  448 (516)
T KOG2956|consen  377 LEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPD  448 (516)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhh
Confidence            77777777777666665 455566555543        233344455456666666777777777755432111 12235


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940          206 GLVPLLKLLDSKNGSLQHNAAFALYGLA  233 (548)
Q Consensus       206 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~  233 (548)
                      ..|.+++.-++.+..||+.++.+|..+.
T Consensus       449 iaP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  449 IAPCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             hhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            6777888888889999999999988775

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.27  E-value=0.71  Score=47.32  Aligned_cols=213  Identities=15%  Similarity=0.130  Sum_probs=132.5

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ..+.++..|--+|..+..-+.+...     .-+|.++..+. +++|.+|..|+..++.++-. -   ...++. ..+.|.
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vc-f---N~~~de-~t~yLy  977 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVC-F---NTTADE-HTHYLY  977 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeecccccee-h---hhhhHH-HHHHHH
Confidence            4578888888888888643333222     45788888886 89999999999999887752 1   111222 466788


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      +-|.+.+..+|+.+..++..|...     .++--.|-++.+..+|.+++.++...|-..+..++..+..     +-.|.+
T Consensus       978 rrL~De~~~V~rtclmti~fLila-----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt-----~yn~fi 1047 (1128)
T COG5098         978 RRLGDEDADVRRTCLMTIHFLILA-----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT-----MYNGFI 1047 (1128)
T ss_pred             HHhcchhhHHHHHHHHHHHHHHHc-----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc-----hhhhhH
Confidence            888899999999999999988643     2333468889999999999999999999999998754322     223455


Q ss_pred             HHHHHhhCC---CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940          167 RPLIEMLQS---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI  243 (548)
Q Consensus       167 ~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  243 (548)
                      +.+-.+-++   ++.. -....+.|..+......++++.+    ....++++.....-....+.++.+|-...++...+.
T Consensus      1048 difs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql~E----~L~~rl~rc~tq~qwd~~~~~l~nLp~k~~~~~~Ll 1122 (1128)
T COG5098        1048 DIFSTLSSDAENGQEP-FKLIIGFLTDFISKERHQKQLKE----SLFLRLLRCNTQSQWDKLLCSLFNLPDKIAGSGGLL 1122 (1128)
T ss_pred             HHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHhcCCccccchhhHh
Confidence            443333222   1222 22334444444443333333322    112344444333334456667777755444444444


Q ss_pred             Hh
Q 008940          244 RV  245 (548)
Q Consensus       244 ~~  245 (548)
                      +.
T Consensus      1123 ~~ 1124 (1128)
T COG5098        1123 NR 1124 (1128)
T ss_pred             hc
Confidence            33

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.25  E-value=1.7  Score=46.49  Aligned_cols=170  Identities=16%  Similarity=0.196  Sum_probs=109.4

Q ss_pred             HHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChH--HHHHhhcCCCh-h
Q 008940          145 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV--PLLKLLDSKNG-S  220 (548)
Q Consensus       145 ~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~L~~ll~~~~~-~  220 (548)
                      +|++.+...+.....+.+.|++..+..+++. ...+++..+.+.+.|++...+.+........+.  .+-.++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            7889998889999999999999999999986 566789999999999997766544433222232  34445554444 7


Q ss_pred             HHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHH-HHHHHHHh-------hhhhhhHH-HHHHHHh-
Q 008940          221 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK-TLKRLEEK-------IHGRVLNH-LLYLMRV-  290 (548)
Q Consensus       221 v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~-L~~ll~~-  290 (548)
                      ....++.+|+.+..+.+....   .              ....|+.. ..+++...       .....+.+ +..++.. 
T Consensus       574 rsY~~~siLa~ll~~~~~~~~---~--------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s  636 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTE---C--------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS  636 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCcc---c--------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence            888999999999765332000   0              00111110 01111100       11112222 4444444 


Q ss_pred             hhhhhhhhHHHHhhhccCC-CccceeeecCCchHHHHHhhcC
Q 008940          291 AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGS  331 (548)
Q Consensus       291 ~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~  331 (548)
                      ..+..+..|.|++.+++.. ++..+.+.+.|+++.+.++-..
T Consensus       637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (699)
T KOG3665|consen  637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL  678 (699)
T ss_pred             CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence            6788999999999999864 5577777788888877665543

>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]

Probab=94.17  E-value=0.041  Score=51.68  Aligned_cols=139  Identities=18%  Similarity=0.186  Sum_probs=110.5

Q ss_pred             cEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh--HHHHHHHHH
Q 008940          382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI--AQDLLRAAD  459 (548)
Q Consensus       382 Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~--~~~ll~~a~  459 (548)
                      +..+..+...+++|+.++...|+.|..+....-..+....+.+-.++...+..+.+++|.. ++-.+..  ...++.+..
T Consensus        28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~  106 (319)
T KOG1778|consen   28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSH  106 (319)
T ss_pred             hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhh
Confidence            4444445678999999999999999888765533344556777788889999999999998 4433332  456666777


Q ss_pred             HhChHhHHHHHHHHHHh-cCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHh
Q 008940          460 QYLLEGLKRLCEYTIAQ-DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSN  521 (548)
Q Consensus       460 ~~~~~~l~~~c~~~l~~-~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~  521 (548)
                      .|.++..+..|...+.. .++..+++..+..+..+....|...+...+...|....+++.+..
T Consensus       107 ~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~  169 (319)
T KOG1778|consen  107 VYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFA  169 (319)
T ss_pred             hhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCcee
Confidence            89999999999887754 678899999999999999999999999999999999888665543

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.13  E-value=0.62  Score=50.73  Aligned_cols=161  Identities=24%  Similarity=0.295  Sum_probs=122.7

Q ss_pred             CCchHHHHhhc----cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCCh
Q 008940           38 GGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP  112 (548)
Q Consensus        38 g~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~  112 (548)
                      ...|.+++..+    .++|++|..|.-+|+.+..-+.+.    ++. -++.|+..+. ++++.+|..++-+++.++...+
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ces-~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HHH-HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            35677777774    357999999999999987533332    222 5888999997 8999999999999999987766


Q ss_pred             hHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940          113 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  192 (548)
Q Consensus       113 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  192 (548)
                      ..-+.     .-+.|-.-|.+.++.+++.|...|..|...+     .+--.|.+.-+..++.+++++++..|-..+..|+
T Consensus       994 nlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  994 NLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            65333     3457888889999999999999999997432     2334699999999999999999999988888887


Q ss_pred             cCCcchhhhHhcCChHHHHHhhcCCC
Q 008940          193 QDMHNQAGIAHNGGLVPLLKLLDSKN  218 (548)
Q Consensus       193 ~~~~~~~~~~~~~~l~~L~~ll~~~~  218 (548)
                      .....   +.  +.+|.++.-|.+++
T Consensus      1064 ~k~n~---iy--nlLPdil~~Ls~~~ 1084 (1251)
T KOG0414|consen 1064 SKGNT---IY--NLLPDILSRLSNGN 1084 (1251)
T ss_pred             hcccc---hh--hhchHHHHhhccCc
Confidence            55421   11  45777777777664

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=93.84  E-value=6.3  Score=38.10  Aligned_cols=133  Identities=16%  Similarity=0.151  Sum_probs=80.5

Q ss_pred             HHHHhhccCC-HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc----------cCChHHHHHHHHHHHHhhcC
Q 008940           42 PLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----------SEDSAIHYEAVGVIGNLVHS  110 (548)
Q Consensus        42 ~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~----------~~~~~v~~~a~~~L~~l~~~  110 (548)
                      .+...|..+. ...+...+..+..+++ +....+.+.....++.|+.+.+          .++..+...+..+|+|+...
T Consensus        49 ~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~  127 (532)
T KOG4464|consen   49 RIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH  127 (532)
T ss_pred             HHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence            4666666655 5566677788888887 3444443333334555554443          13457889999999999999


Q ss_pred             ChhHHHHHHhcCChHHHHHhhhcCC-----hHHHHHHHHHHHHhhcCCchhHH-HHHhcCChHHHHHhhCC
Q 008940          111 SPNIKKEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQS  175 (548)
Q Consensus       111 ~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~~ll~~  175 (548)
                      ++.+++...+......+++.+...-     ..+...-.+.|--+..-....|. .+.+.++++.+-..+.+
T Consensus       128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led  198 (532)
T KOG4464|consen  128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED  198 (532)
T ss_pred             cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence            9999999998887777777654321     11222222222222222234443 45667788888777754

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=93.65  E-value=0.59  Score=48.09  Aligned_cols=152  Identities=14%  Similarity=0.187  Sum_probs=99.3

Q ss_pred             hhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchh
Q 008940           77 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC  156 (548)
Q Consensus        77 ~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  156 (548)
                      .+.++++.|+++++..|..+|-.-+.-+-+..   +.....+++..+.|.+..-+.+.++.+++.++..+..++.--.+ 
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~-  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK-  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-
Confidence            45568888999998888888866655554443   33445667777889999989898998998888888887732111 


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChH-HHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940          157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV-PLLKLLDSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       157 ~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~-~L~~ll~~~~~~v~~~a~~~L~~l~~~  235 (548)
                        ...+...+..+..+-.+++..+|.+..-||+.++.....   ..+.+.+. .+.+-++++-...+..+..+++.....
T Consensus       403 --~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~  477 (690)
T KOG1243|consen  403 --RNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEY  477 (690)
T ss_pred             --hhhcHHHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence              133334555555555556677888888888877655322   11333333 355666666666777777777766654


Q ss_pred             Cc
Q 008940          236 ED  237 (548)
Q Consensus       236 ~~  237 (548)
                      .+
T Consensus       478 ~~  479 (690)
T KOG1243|consen  478 FD  479 (690)
T ss_pred             cc
Confidence            43

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.63  E-value=1.2  Score=39.14  Aligned_cols=142  Identities=10%  Similarity=0.064  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC-----CHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHH
Q 008940           15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-----DTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM   88 (548)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      .|+..|.-++ +.|+.+..+.++.+--.|-..|...     -+.+|..++..++.+... +++....+....++|..+++
T Consensus       119 naL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         119 NALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            4555566666 7899999888877655555666432     267899999999999984 34455666777899999999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHh-------cCChHHHH-HhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-------AGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKV  158 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  158 (548)
                      +..+++--+..|+.++..+..++...+-....       ...+..++ ++.+.......+.+.++-..++ +++..|.
T Consensus       198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs-d~p~aR~  274 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS-DKPHARA  274 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec-CCHhHHH
Confidence            99998888999999999997776554222111       11222222 2333445566677777766665 3355444

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=0.51  Score=43.58  Aligned_cols=145  Identities=19%  Similarity=0.187  Sum_probs=100.0

Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940           81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  160 (548)
                      .+...+..|.+.+++.+..++..+..|+...++....+.. ..|-.+++-+++....+.+.|+.++..+.+........ 
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-  166 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-  166 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3455677788899999999999999998766655444443 35667777888888899999999999997543332222 


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940          161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA  233 (548)
Q Consensus       161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~  233 (548)
                      ...+.+-.|+.--..++.-+++.|-.+|..+........      .++.|...+++.++.++..++....+..
T Consensus       167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence            112222222222233456689999999999987665443      3566777888999999888776665553

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.52  E-value=0.21  Score=35.67  Aligned_cols=67  Identities=10%  Similarity=0.140  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHhcccCCcchHHHHHhcC
Q 008940          181 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGG  247 (548)
Q Consensus       181 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~  247 (548)
                      .+.++|++++++..+.....+.+.+.++.++++..+ +...+|-.+..+|+-++...+..+.+.+.|.
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            467899999999988777777777889999999875 5578999999999999999888888777663

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=93.42  E-value=0.35  Score=51.13  Aligned_cols=151  Identities=17%  Similarity=0.107  Sum_probs=109.6

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      .++|.|++..+.....++..-+.+|.+...+.|...-.---....|.|++.|.-+|..+|..+..++.-+....+.....
T Consensus       867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~  946 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE  946 (1030)
T ss_pred             hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence            57888888888767777888888888888655542211112356788888888899999999999888776554443222


Q ss_pred             HHhcCChHHHHHhhhcCC---hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 008940          118 VLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  189 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~  189 (548)
                      -+ ...+|.++.+=.+.+   ..+|..|..+|..+...-|...-...+..+++.+.+.|.++..-+|+.|..+=.
T Consensus       947 ~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  947 HL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             HH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            22 346777777766655   568889999999998766666666667788899999999988888888876643

>PRK14707 hypothetical protein; Provisional

Probab=93.39  E-value=9.2  Score=45.07  Aligned_cols=330  Identities=17%  Similarity=0.093  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC
Q 008940           13 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE   92 (548)
Q Consensus        13 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~   92 (548)
                      -+.|+..|..-...+++.+..+--.|+-..|=.+-+-++..+-..|+..|..-..++++.++.+-..|+-..|=.+-+=+
T Consensus       349 C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWP  428 (2710)
T PRK14707        349 CAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWP  428 (2710)
T ss_pred             HHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCC
Confidence            33444444444335566665544333333333344556766666666666655556788888887776665555555667


Q ss_pred             ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHh
Q 008940           93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM  172 (548)
Q Consensus        93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l  172 (548)
                      +..+...++..|..-..++.+.++.+--.++...|-.+-+=++..+...++..|..-..++++.++.+--.++...|-.+
T Consensus       429 d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aL  508 (2710)
T PRK14707        429 DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSL  508 (2710)
T ss_pred             cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHh
Confidence            77777777777766656667776665555544343333333566666666666655444545544444333343444333


Q ss_pred             hCCCC-HHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccc
Q 008940          173 LQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL  251 (548)
Q Consensus       173 l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L  251 (548)
                      -+-++ +...+.+.+.-+.+.....-...+...+....+-.+-+.++....+.++..|..+..+......-.....|..+
T Consensus       509 SK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~l  588 (2710)
T PRK14707        509 SKWPDTPICAEAASALAERVVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIV  588 (2710)
T ss_pred             hcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHH
Confidence            33343 34555556666666544433333222222222233334455555566666666554333222222223333444


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHh---------hhhhhhHHHHHHHHh-hhhhhhhhHHHHhh-hccCCCccceeeecCC
Q 008940          252 QDGEFIVQATKDCVAKTLKRLEEK---------IHGRVLNHLLYLMRV-AEKGVQRRVALALA-HLCSPDDQRTIFIDGG  320 (548)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~-~l~~~~~~~~~~~~~~  320 (548)
                      ++..........|..........+         .+..-+..+++-+.. ++......++..|. .+......+..+ +..
T Consensus       589 lNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~f-naQ  667 (2710)
T PRK14707        589 LNALSKWPDTAVCAEAVNALAERLVDEPDLRKELDPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTF-NSL  667 (2710)
T ss_pred             HHhhccCCCcHHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhc-chH
Confidence            443333334455554332222222         222334444554543 33333333333333 233333322222 234


Q ss_pred             chHHHHHhhc-CCCCccchhhHHH
Q 008940          321 GLELLLGLLG-STNPKQQLDGAVA  343 (548)
Q Consensus       321 ~i~~L~~ll~-~~~~~v~~~a~~~  343 (548)
                      .+..+++-++ -++.++-..|+..
T Consensus       668 ~vAn~LNALSKWPe~e~Cr~Aa~~  691 (2710)
T PRK14707        668 DVANALNALSKWPDTPVCAAAAGG  691 (2710)
T ss_pred             HHHHHHHhhhcCCCchHHHHHHHH
Confidence            4556666555 3444443333333

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.36  E-value=1.3  Score=44.16  Aligned_cols=155  Identities=12%  Similarity=0.194  Sum_probs=112.5

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCC----hHHHHHHHHHHHHhhcCChhHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIK  115 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~  115 (548)
                      ...+.+.+.+++...+..|+.-|..++. ++.....++...++..|..++.+++    .++....++++..+....- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            3467788888888888889999999997 7889999999999999999998764    4666667777666643321 11


Q ss_pred             HHHHhcCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940          116 KEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  193 (548)
                      ...+...++.....+..  ..+..+...|+..|-++...++...+.+.+.--++.|+..++..+..++..|...+..+..
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            11112233444444432  2345567778888888887777777888888889999999999999999888887777775


Q ss_pred             CCc
Q 008940          194 DMH  196 (548)
Q Consensus       194 ~~~  196 (548)
                      ..+
T Consensus       243 ~a~  245 (713)
T KOG2999|consen  243 KAP  245 (713)
T ss_pred             hCC
Confidence            443

>PRK14707 hypothetical protein; Provisional

Probab=93.33  E-value=4.6  Score=47.29  Aligned_cols=246  Identities=17%  Similarity=0.185  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhhhChhhHHHHHhcCCchHHHH-hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh-ccC
Q 008940           15 RAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSE   92 (548)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll-~~~   92 (548)
                      .++..|......++..+..+-. .+|..++. +-+-++..--..++..|.....+....+..+-..| +...++.| +=+
T Consensus       183 ~aa~~la~~~~~~d~~~~~~~~-q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~-va~~lN~lsKwp  260 (2710)
T PRK14707        183 AVAPRFAALVASDDRLRSAMDA-QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQE-LGNALNALSKWA  260 (2710)
T ss_pred             HHHHHHHHHhcCChhhhcccch-HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHH-HHHHHHHHhcCC
Confidence            3444443333244455544433 33434443 33445533334444555444433444444544444 44444444 445


Q ss_pred             ChHHHHHHHHHH-HHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHH
Q 008940           93 DSAIHYEAVGVI-GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE  171 (548)
Q Consensus        93 ~~~v~~~a~~~L-~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~  171 (548)
                      +......++..| ..++ +.+..++.+-..++-..|-.+-+-++..+...++..|..-.-++++.+..+ +.-.+...+.
T Consensus       261 ~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LN  338 (2710)
T PRK14707        261 DTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALN  338 (2710)
T ss_pred             CchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHH
Confidence            554555554444 4444 446655555444433344444444666777777766655544555554333 2233444444


Q ss_pred             hhCC-CC-HHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHH-hcccCCcchHHHHHhcC
Q 008940          172 MLQS-PD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALY-GLADNEDNVADFIRVGG  247 (548)
Q Consensus       172 ll~~-~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~g~  247 (548)
                      .|+. ++ ...+..+...-..++.+.+-+..+- ..++..+++-+.. ++..+.+.++..|. .+..+.+-++.+-..| 
T Consensus       339 alsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-  416 (2710)
T PRK14707        339 ALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-  416 (2710)
T ss_pred             HhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-
Confidence            4543 34 3444555444555666665555443 3455555555543 55566666666665 5565666555554433 


Q ss_pred             cccccccchhhhhhhHHHH
Q 008940          248 VQKLQDGEFIVQATKDCVA  266 (548)
Q Consensus       248 i~~L~~~~~~~~~~~~~~~  266 (548)
                      +..+++..........|..
T Consensus       417 van~lnalsKWPd~~~C~~  435 (2710)
T PRK14707        417 VSNALNALAKWPDLPICGQ  435 (2710)
T ss_pred             HHHHHHHhhcCCcchhHHH
Confidence            3333333333334455543

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=93.32  E-value=8.3  Score=37.34  Aligned_cols=158  Identities=15%  Similarity=0.159  Sum_probs=111.2

Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhhc-CChhHHHHHHhc-C-ChHHHHHhhhcC-----C--------hHHHHHHHHH
Q 008940           82 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA-G-ALQPVIGLLSSC-----C--------SESQREAALL  145 (548)
Q Consensus        82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-g-~i~~L~~ll~~~-----~--------~~~~~~a~~~  145 (548)
                      ++.+-+.|+.....+...+++.|..++. ++......+... + -.+.+.+++...     .        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6777888888888888899999999998 665666666543 2 345566665321     1        2778777774


Q ss_pred             HHH-hhcCCchhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHH-hhcCCcc----hhhhHhcCChHHHHHhhcCCC
Q 008940          146 LGQ-FAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHN----QAGIAHNGGLVPLLKLLDSKN  218 (548)
Q Consensus       146 L~~-l~~~~~~~~~~~~~-~g~v~~L~~ll~~~~~~v~~~a~~~L~~-l~~~~~~----~~~~~~~~~l~~L~~ll~~~~  218 (548)
                      +.. +...++..+..+.+ .+.+..+..-|..+++++....+.+|.. +..+...    +..+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            444 44445556655544 6678889999999889999999999985 4444322    334455566777888777766


Q ss_pred             h----hHHHHHHHHHHhcccCCcch
Q 008940          219 G----SLQHNAAFALYGLADNEDNV  239 (548)
Q Consensus       219 ~----~v~~~a~~~L~~l~~~~~~~  239 (548)
                      +    .+...+-..|..+|.++..-
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~G  242 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKHG  242 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCcc
Confidence            6    88888889999999877653

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.16  E-value=0.54  Score=41.24  Aligned_cols=108  Identities=15%  Similarity=0.129  Sum_probs=72.7

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhcc---------CChHHHHHHHHHHHHhhcC
Q 008940           41 PPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS---------EDSAIHYEAVGVIGNLVHS  110 (548)
Q Consensus        41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~~---------~~~~v~~~a~~~L~~l~~~  110 (548)
                      ..+++.+.+.....  ..+..|....+. .......+++.||+..|+.+|..         .+......++++|..+...
T Consensus        69 ~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~  146 (187)
T PF06371_consen   69 EWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT  146 (187)
T ss_dssp             HHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc
Confidence            34566665544322  333333333322 23456778888999999998861         3457888999999999766


Q ss_pred             ChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940          111 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA  150 (548)
Q Consensus       111 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  150 (548)
                      .......+...+++..++..+.+++..++..++..|..+|
T Consensus       147 ~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  147 KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            5555455555789999999999999999999999998886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.03  E-value=2.4  Score=41.95  Aligned_cols=140  Identities=16%  Similarity=0.072  Sum_probs=84.4

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhh-hcCChHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTL   85 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L   85 (548)
                      ++..++..|++.|.+.+..-|....... .-.+..++.-| ...+.+|+..++.+|..+.. ...+..... =.++.-.+
T Consensus       270 p~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~-~~~~~~l~~~~l~ialrl  347 (533)
T KOG2032|consen  270 PSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE-KASNDDLESYLLNIALRL  347 (533)
T ss_pred             chhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-hhhhcchhhhchhHHHHH
Confidence            3447899999999999976455443333 34455566544 45569999999999988875 222222211 11234456


Q ss_pred             HHHhccCChHHHHHHHHHHHHhhcCCh-hHHHHHHh--cCChHHHHHhhhcCChHHHHHHHHHHHHhh
Q 008940           86 ILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLA--AGALQPVIGLLSSCCSESQREAALLLGQFA  150 (548)
Q Consensus        86 v~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  150 (548)
                      ..+..+.+++.|..+..+++.|+.... ..++.+.+  .+....++-.+.++++.+.. |+......|
T Consensus       348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c  414 (533)
T KOG2032|consen  348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTC  414 (533)
T ss_pred             HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhc
Confidence            677788999999999999888864322 22222221  22334555566677776544 344333333

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=93.01  E-value=0.97  Score=45.25  Aligned_cols=124  Identities=16%  Similarity=0.168  Sum_probs=74.9

Q ss_pred             CChHHHHHH-hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhH
Q 008940           80 NALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCK  157 (548)
Q Consensus        80 g~i~~Lv~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~  157 (548)
                      |++..++.. ..+.+.++|+.|+-+|+-+|-++++         .++..+++|.. .++.++...+.+|+-.|.+.-.. 
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-  620 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-  620 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-
Confidence            455666655 5577888888888888877765444         45566666654 45677777777777777553221 


Q ss_pred             HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCCh
Q 008940          158 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG  219 (548)
Q Consensus       158 ~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~  219 (548)
                            -++..|-.++.+.+.-||+.|+-+++-+......+-.-.-.+....+.+++.+++.
T Consensus       621 ------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe  676 (926)
T COG5116         621 ------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE  676 (926)
T ss_pred             ------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence                  13455666667777778888887777766333221111111344456666655543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.96  E-value=2.4  Score=37.12  Aligned_cols=110  Identities=19%  Similarity=0.219  Sum_probs=70.7

Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHH-HhhcCChhHHHHHHhcCChHHHHHhhhc---------CChHHHHHHHHHHHHhh
Q 008940           81 ALPTLILMLRSEDSAIHYEAVGVIG-NLVHSSPNIKKEVLAAGALQPVIGLLSS---------CCSESQREAALLLGQFA  150 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~  150 (548)
                      ....+++.+.+.....  ..+.-|. .|-......-+.+++.||+..|+.+|..         .+......++.+|..+.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4556677776544332  1111121 1212223445677778999999988864         23467788899999997


Q ss_pred             cCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940          151 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  192 (548)
Q Consensus       151 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  192 (548)
                      .........+...+++..+...|.+++..++..++..|..+|
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            554343444445889999999999999999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=92.91  E-value=16  Score=39.60  Aligned_cols=124  Identities=16%  Similarity=0.191  Sum_probs=81.5

Q ss_pred             HhhhcCChHHHHHHhccC-----ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh----cCC----hHHHHH
Q 008940           75 QIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----SCC----SESQRE  141 (548)
Q Consensus        75 ~~~~~g~i~~Lv~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~~~~~  141 (548)
                      .+.+.|++..++.++.+-     ...+....+.+|...+.. +.+|+.+.+.|+++.|+..+.    ...    .++.+.
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~  190 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ  190 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence            344678999999998742     334555566666666554 788999999999999988774    333    556666


Q ss_pred             HHHHHHHhhcCCchhHHH----HH--------hcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCCcchh
Q 008940          142 AALLLGQFAATDSDCKVH----IV--------QRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQDMHNQA  199 (548)
Q Consensus       142 a~~~L~~l~~~~~~~~~~----~~--------~~g~v~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~  199 (548)
                      ...++..+...-......    ..        ...-+..|++.+.+    .++.+....++.|-+|+.+.....
T Consensus       191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m  264 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM  264 (802)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence            666665554321110000    00        11236677777765    368899999999999998876643

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.74  E-value=0.49  Score=47.26  Aligned_cols=125  Identities=21%  Similarity=0.258  Sum_probs=84.3

Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh-hhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                      +++.+.++.+|...+..++.--.+..       +.|++..++.. .++.+.++++.|+-+|+-+|..++.         .
T Consensus       523 ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~  586 (926)
T COG5116         523 ELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------L  586 (926)
T ss_pred             HHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------h
Confidence            44445555566555544433211111       24567777777 6778899999999999999876544         3


Q ss_pred             hHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940          166 VRPLIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA  233 (548)
Q Consensus       166 v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~  233 (548)
                      +...+++| .+.++.||...+.+|+-.|.+...+.      ++..|-.+..+.+.-+++.|+-+++-+.
T Consensus       587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl  649 (926)
T COG5116         587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMIL  649 (926)
T ss_pred             hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence            33444444 45788999999999998887765442      3555667777888888888888887764

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=92.51  E-value=0.46  Score=48.85  Aligned_cols=186  Identities=16%  Similarity=0.194  Sum_probs=128.4

Q ss_pred             HhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhH
Q 008940           35 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI  114 (548)
Q Consensus        35 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~  114 (548)
                      ...+++|.|+++++..|..+|..-+.-+-+...+   -...+.+.-+.+.+..-+.+.++.+|+..+..+..|+.-   .
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k---L  400 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK---L  400 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---h
Confidence            3446899999999999999998887777766642   334555666899999999999999999999999988742   2


Q ss_pred             HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC-hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940          115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA-VRPLIEMLQSPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       115 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~-v~~L~~ll~~~~~~v~~~a~~~L~~l~~  193 (548)
                      -........+..+.++-.+.+..++.+..-+|+.++......    ++.++ +..+...++++-+..|..+..+++....
T Consensus       401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence            222333345556666656667788888888888887543222    13333 3455556777777788888888877765


Q ss_pred             CCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc
Q 008940          194 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL  232 (548)
Q Consensus       194 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l  232 (548)
                      ..+...  +....++.+..+.-+++..++..|-.++...
T Consensus       477 ~~~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f  513 (690)
T KOG1243|consen  477 YFDQSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQF  513 (690)
T ss_pred             ccchhh--hhhhccccccccccCcccchhhHHHHHHHHH
Confidence            544322  2224566677777777777777777666554

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=92.50  E-value=0.31  Score=35.56  Aligned_cols=49  Identities=33%  Similarity=0.399  Sum_probs=32.6

Q ss_pred             cchHhHHHHHHHHHHhChHhHHHHHHHHHHhcC---CHhhHHHHHHHHHHcC
Q 008940          446 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFH  494 (548)
Q Consensus       446 ~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l---~~~n~~~~~~~a~~~~  494 (548)
                      ++...+.+|+.+|++++++.|...|+..+...+   +++..-.++.....+.
T Consensus        11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t   62 (78)
T PF01466_consen   11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT   62 (78)
T ss_dssp             S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred             cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence            466789999999999999999999999886655   4444444444444333

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=92.39  E-value=5.1  Score=37.32  Aligned_cols=205  Identities=13%  Similarity=0.117  Sum_probs=138.5

Q ss_pred             HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH-----HhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 008940          116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI-----VQRGAVRPLIEMLQSPDVQLREMSAFALGR  190 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~  190 (548)
                      +.+.+.|.+..+++.+..-+-+.+..+..+..++-...-..+...     .+...+..|+.--.. .+++...+-..|..
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE  151 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence            566778999999999999888888888888888864432222211     222344444444111 36666666666777


Q ss_pred             hhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHH
Q 008940          191 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL  269 (548)
Q Consensus       191 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~  269 (548)
                      +.....-.+.+..+..+.....+...++-++...|..+...+.. +......+....                       
T Consensus       152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n-----------------------  208 (342)
T KOG1566|consen  152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRN-----------------------  208 (342)
T ss_pred             HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhC-----------------------
Confidence            66666666677777788888888888888888888887777744 332222221111                       


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc----eeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940          270 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVALF  345 (548)
Q Consensus       270 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  345 (548)
                            .+.-+.+..-.++.+++.-.+..+...++.+..+..+.    +.+.....+..+..+|+++...+|..|-....
T Consensus       209 ------~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFK  282 (342)
T KOG1566|consen  209 ------YDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFK  282 (342)
T ss_pred             ------hhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHH
Confidence                  11112233446788899999999999999997665443    45555677889999999999999999987766


Q ss_pred             HHhhh
Q 008940          346 KLANK  350 (548)
Q Consensus       346 ~l~~~  350 (548)
                      -...+
T Consensus       283 vfvAn  287 (342)
T KOG1566|consen  283 VFVAN  287 (342)
T ss_pred             HHhcC
Confidence            55443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.36  E-value=0.48  Score=33.83  Aligned_cols=66  Identities=12%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcC
Q 008940          139 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNG  205 (548)
Q Consensus       139 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  205 (548)
                      .+.+.|+++++++. +.....+.+.++++.++++... +...+|-.+..+|+-++...+..+.+.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            47789999999865 5555666678999999999875 667899999999999998887777666554

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=92.30  E-value=5.6  Score=43.04  Aligned_cols=185  Identities=12%  Similarity=0.092  Sum_probs=124.3

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhh-hcCChHHHHHHh-ccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~Lv~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      .+.+-.-+.+.++.-|..|+..+...... +. ..... ..|.+..++... .+.|..+...++.+|..++...... ..
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e-~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~  331 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEE-AK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FR  331 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhc-cc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hH
Confidence            34455556678899999999999998863 33 11111 123333444433 3668888899999999998655443 22


Q ss_pred             HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940          118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                      -...+..|.++..+......++..+..++...+...+       .....+.++..+++++|..+..+...+.........
T Consensus       332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence            3335678899999988888888777777766653211       124678889999999999998877777666544332


Q ss_pred             --hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940          198 --QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  234 (548)
Q Consensus       198 --~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  234 (548)
                        ...-.-.+.++.++....+.+.+|+..|..+++.+..
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence              1111122456667777778889999999888887754

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.28  E-value=3  Score=41.82  Aligned_cols=143  Identities=16%  Similarity=0.148  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC----HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      +..+..|...|..++ .++.....+++..++..|.+++.+++    .++....++++..+-.+.- .........++...
T Consensus        97 ~~~~~~a~k~l~sls-~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW~~~~~~fV~~~  174 (713)
T KOG2999|consen   97 NISKMEALKELDSLS-LDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSWESVSNDFVVSM  174 (713)
T ss_pred             cHHHHHHHHHHhhcc-ccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eeeeecccHHHHHH
Confidence            444555788888888 57788888888999999999998765    4666777777777765422 22222222334444


Q ss_pred             HHHhc--cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc
Q 008940           86 ILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS  154 (548)
Q Consensus        86 v~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  154 (548)
                      ..+.+  ..+..+-..|+..|-++...++..++.+.++-.+..++..++..+..+...|...+..+....+
T Consensus       175 a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~  245 (713)
T KOG2999|consen  175 ASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAP  245 (713)
T ss_pred             HHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCC
Confidence            44443  3466788889999999998888888999999999999999999999888887776666654443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=92.22  E-value=2.3  Score=45.82  Aligned_cols=171  Identities=17%  Similarity=0.179  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhcCCc---hHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRMEGGI---PPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i---~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      .-+..|+..+.....+..  .  ....+..   ..++... .+.|..+...|+..|..++.......... ..+..+.++
T Consensus       268 K~R~Eale~l~~~l~e~~--~--~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~ll  342 (815)
T KOG1820|consen  268 KDRKEALEELVAILEEAK--K--EIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSLL  342 (815)
T ss_pred             HHHHHHHHHHHHHHhccc--c--ccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchHH
Confidence            446778888888874333  1  1223333   3333322 45678888899999999987544432222 235788899


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc-hhHHHHHhcCC
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGA  165 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~  165 (548)
                      +-+.+....++..+..++-.++...+.       ....+.+...+.+.++..+..+...+........ .....-.-.++
T Consensus       343 d~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l  415 (815)
T KOG1820|consen  343 DRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTL  415 (815)
T ss_pred             HHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHH
Confidence            999988888888888887776543222       3457788889999999999887777766654433 22222222467


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940          166 VRPLIEMLQSPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~  193 (548)
                      ++.++....+.+.+||..|..++..+-.
T Consensus       416 ~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  416 VPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             hHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            8888888889999999999999888753

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=91.82  E-value=21  Score=38.41  Aligned_cols=155  Identities=15%  Similarity=0.069  Sum_probs=106.6

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc--cCChHHHHHHHHHHHHhhcCChhHH
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIK  115 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~  115 (548)
                      +++..|.++....+.++.-.-..+|...+..+++....+ +..+.|.++.+..  ++++.+...+-.++-.++.. .++.
T Consensus       530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~  607 (1005)
T KOG2274|consen  530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANY  607 (1005)
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhh
Confidence            455566666667778888888999999998766655444 4446776666554  56777777777777777542 2222


Q ss_pred             HHHHhcCChHHHHHhhhcCC----hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHH
Q 008940          116 KEVLAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGR  190 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~  190 (548)
                      . -.....||.++..+..+.    ......++..|..+.+..+.......-.-+.|++.++.- ++|.++...+-.||..
T Consensus       608 g-~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra  686 (1005)
T KOG2274|consen  608 G-PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRA  686 (1005)
T ss_pred             c-chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHH
Confidence            2 223457999999998766    556677777888777766554444444457777777754 4677888899999998


Q ss_pred             hhcCC
Q 008940          191 LAQDM  195 (548)
Q Consensus       191 l~~~~  195 (548)
                      +....
T Consensus       687 ~Is~~  691 (1005)
T KOG2274|consen  687 LISVT  691 (1005)
T ss_pred             HHhcC
Confidence            87654

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.79  E-value=2.1  Score=33.68  Aligned_cols=89  Identities=18%  Similarity=0.202  Sum_probs=63.9

Q ss_pred             eCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccc---------------------
Q 008940          387 VEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVD---------------------  445 (548)
Q Consensus       387 ~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~---------------------  445 (548)
                      .+|+.|.+.+. .|-+|-..+.|+... . ...-.|..+++...+|..+++|+-..+-.                     
T Consensus         9 ~dge~F~vd~~-iAerSiLikN~l~d~-~-~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr   85 (158)
T COG5201           9 IDGEIFRVDEN-IAERSILIKNMLCDS-T-ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDR   85 (158)
T ss_pred             cCCcEEEehHH-HHHHHHHHHHHhccc-c-ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHH
Confidence            36778888775 466888888877421 1 12225777899999999999999643221                     


Q ss_pred             ----cchHhHHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 008940          446 ----VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI  478 (548)
Q Consensus       446 ----~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l  478 (548)
                          ++.+.+.++.-+|+++.++.|.+.|+..+...+
T Consensus        86 ~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi  122 (158)
T COG5201          86 FFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI  122 (158)
T ss_pred             HHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence                123567788889999999999999988775544

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.76  E-value=5.9  Score=44.88  Aligned_cols=144  Identities=11%  Similarity=0.123  Sum_probs=98.7

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      +.+..++..+..+...+|.+|+++|..+...++....   ...+-..+-.-+.+....||+.|+..++......++....
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q  892 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ  892 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence            4567788888988899999999999999985554321   1122333445566778899999999999887665654333


Q ss_pred             HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcC
Q 008940          118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll---~~~~~~v~~~a~~~L~~l~~~  194 (548)
                      .     ...+..-..+....||+.+..++..+|...|....      .+.....++   .++...++..+..++.++...
T Consensus       893 y-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~  961 (1692)
T KOG1020|consen  893 Y-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT  961 (1692)
T ss_pred             H-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence            2     23455555667788999999999999977665432      223333333   344445888888888888754


Q ss_pred             C
Q 008940          195 M  195 (548)
Q Consensus       195 ~  195 (548)
                      +
T Consensus       962 p  962 (1692)
T KOG1020|consen  962 P  962 (1692)
T ss_pred             C
Confidence            4

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=91.69  E-value=6.1  Score=38.78  Aligned_cols=82  Identities=17%  Similarity=0.259  Sum_probs=54.4

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ....+|+.++-.|..-+ .++..+..+.+.|.+..+++.+.. ++..+...++.++..+...+......+...+....++
T Consensus        34 ~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~  112 (361)
T PF07814_consen   34 SSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLLL  112 (361)
T ss_pred             CCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHHH
Confidence            34477888877788888 689999999999999999998854 3332444444444444432344444444555666667


Q ss_pred             HHhc
Q 008940           87 LMLR   90 (548)
Q Consensus        87 ~ll~   90 (548)
                      .++.
T Consensus       113 ~Ll~  116 (361)
T PF07814_consen  113 KLLK  116 (361)
T ss_pred             HHhc
Confidence            7776

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.62  E-value=2.5  Score=47.60  Aligned_cols=144  Identities=15%  Similarity=0.227  Sum_probs=97.5

Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940           81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  160 (548)
                      .+..++..++.+...+|..|+++|.++...++....   ....-..+-.-+.+....|++.|+..++......++.... 
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q-  892 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ-  892 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence            566677788888899999999999999877665421   1122223334455667889999999999877555554333 


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940          161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  234 (548)
Q Consensus       161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  234 (548)
                          ..+.+..-+.+....||..+.+.++.+|...+.-..+.+  ....++.-..+....++..++.++.++-.
T Consensus       893 ----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  893 ----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             ----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence                345667777778889999999999999977765443332  22223333334445578888888877743

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=91.48  E-value=12  Score=34.97  Aligned_cols=202  Identities=14%  Similarity=0.134  Sum_probs=137.2

Q ss_pred             HHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh-----cCChHHHHHHhccC-ChHHHHHHHHHHH
Q 008940           32 TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-----CNALPTLILMLRSE-DSAIHYEAVGVIG  105 (548)
Q Consensus        32 ~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----~g~i~~Lv~ll~~~-~~~v~~~a~~~L~  105 (548)
                      ..+.++|....|++.+...+.+.+..++....++-..+-..+...++     ..++..|+.-  .. .+++...+...|.
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHH
Confidence            45667788999999998888888888888888887632222222111     1233333333  12 2444444444444


Q ss_pred             HhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC----hHHHHHhhCCCCHHHH
Q 008940          106 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA----VRPLIEMLQSPDVQLR  181 (548)
Q Consensus       106 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~----v~~L~~ll~~~~~~v~  181 (548)
                      .-... +...+.+....-.......++.+.-++...|..+...+..........+...+.    .+.--.++++++--++
T Consensus       151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk  229 (342)
T KOG1566|consen  151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK  229 (342)
T ss_pred             HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence            44333 555677777778888888888888888888888877776554444444444332    3335667888888899


Q ss_pred             HHHHHHHHHhhcCCcchhhh----HhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940          182 EMSAFALGRLAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       182 ~~a~~~L~~l~~~~~~~~~~----~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  236 (548)
                      ..+...|+.+-.+.++...+    .....+..++.+|+++...+|..|-.+..-...++
T Consensus       230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            99999999999888775443    33356788999999999999999998888886654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.45  E-value=2.3  Score=46.68  Aligned_cols=180  Identities=13%  Similarity=0.126  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc----CcchhhHhhhcCChHH
Q 008940           10 NSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----NDENKNQIVECNALPT   84 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~~   84 (548)
                      ...+...+.+|..+-+..+ +....+.  ..|+.++-.++..+...|..|..+|..++..    ++.+-.   ....+..
T Consensus       711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lne  785 (1176)
T KOG1248|consen  711 SPAQASRLKCLKRLLKLLSAEHCDLIP--KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNE  785 (1176)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHH
Confidence            3567777888888876544 4444333  2344444444777888899998888888720    000000   0113444


Q ss_pred             HHHHhccC----ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940           85 LILMLRSE----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        85 Lv~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  160 (548)
                      ++..+..+    ...+....+-++..+.....+.-....-.+.+..+.-++.+..++++..|+..+..++...|.....-
T Consensus       786 fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~  865 (1176)
T KOG1248|consen  786 FLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP  865 (1176)
T ss_pred             HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh
Confidence            44444322    22222222444444443322222222234566677777888999999999999999998877766555


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940          161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  194 (548)
                      ....+++.+..+..+....++...-..|-.|+..
T Consensus       866 ~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk  899 (1176)
T KOG1248|consen  866 HLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK  899 (1176)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            5566888888888877777887776666666643

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.25  E-value=0.74  Score=34.75  Aligned_cols=83  Identities=18%  Similarity=0.151  Sum_probs=61.3

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh
Q 008940           41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA  120 (548)
Q Consensus        41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  120 (548)
                      ...+..++++.+.+|..++..|+.+.....  ....-..+++..+...|+++++-+-..|+..|..|+...++       
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-------   76 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-------   76 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-------
Confidence            345667788889999999999999998433  22222345777888899999999999999999999876554       


Q ss_pred             cCChHHHHHhhhc
Q 008940          121 AGALQPVIGLLSS  133 (548)
Q Consensus       121 ~g~i~~L~~ll~~  133 (548)
                       .+++.|++...+
T Consensus        77 -~vl~~L~~~y~~   88 (92)
T PF10363_consen   77 -EVLPILLDEYAD   88 (92)
T ss_pred             -HHHHHHHHHHhC
Confidence             245566555443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.73  E-value=1.3  Score=41.07  Aligned_cols=140  Identities=18%  Similarity=0.217  Sum_probs=97.0

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      +...+..|.+.+++....++..+..++...++....+... ++-.+++-+++....+-+.|+.++..+...-.+....  
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--  166 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--  166 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3456677888889999999999999998666665555544 5667788888889999999999999997542222122  


Q ss_pred             hcCChHHHHH-hhhcC---ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940          120 AAGALQPVIG-LLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  192 (548)
Q Consensus       120 ~~g~i~~L~~-ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  192 (548)
                         -+..++. ++...   +.=+++.|-.+|..+...-..       ..+++.|+..+++.++.++..++.++.+..
T Consensus       167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence               2333333 33322   233778888888888643222       235677888889999999988877766654

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=90.54  E-value=6.4  Score=40.80  Aligned_cols=181  Identities=17%  Similarity=0.157  Sum_probs=115.2

Q ss_pred             hHHHHhhcc----CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHH
Q 008940           41 PPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIK  115 (548)
Q Consensus        41 ~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~  115 (548)
                      |...+...+    +|+.++..|.-.|..+-.-+.+.    .. .-+|.|+..+. +++|.+|..|+-.|+.++.......
T Consensus       895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f----c~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~  969 (1128)
T COG5098         895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF----CS-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA  969 (1128)
T ss_pred             HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH----HH-HHHHHHHHHHhhCCCcceeccceeeccccceehhhhh
Confidence            444445544    67888888888877664322221    11 24788888887 8999999999988888865433222


Q ss_pred             HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940          116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  195 (548)
                      +.     .-..|.+-|.+.+..+++.|..++..|.-.+     ++--.|-++.+..+|.++|.++...|--.+..++..+
T Consensus       970 de-----~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098         970 DE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred             HH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence            22     2346667777888999999999999986432     1222578888999999999999999888888888554


Q ss_pred             cchhhhHhcCChHHHHHhhcCC----ChhHHHHHHHHHHhcccCCcchHHH
Q 008940          196 HNQAGIAHNGGLVPLLKLLDSK----NGSLQHNAAFALYGLADNEDNVADF  242 (548)
Q Consensus       196 ~~~~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~  242 (548)
                      ..    +..|.++. ..-+.++    +.. -......|..+...+...+++
T Consensus      1040 Nt----~yn~fidi-fs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql 1084 (1128)
T COG5098        1040 NT----MYNGFIDI-FSTLSSDAENGQEP-FKLIIGFLTDFISKERHQKQL 1084 (1128)
T ss_pred             cc----hhhhhHHH-HHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            32    23344443 3333322    222 334455555555544444443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=90.18  E-value=3.3  Score=43.03  Aligned_cols=137  Identities=18%  Similarity=0.127  Sum_probs=94.6

Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh-cCCChhHHHHHHHHHHhcccCCcc
Q 008940          160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                      -+...++|.|...+++.+..+++.++..+..++..-+  ...+..-.+|.+..+. ++.+..++.+++.++..+...-+ 
T Consensus       385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-  461 (700)
T KOG2137|consen  385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-  461 (700)
T ss_pred             HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-
Confidence            4456788888888999999999999999999886655  3445555667666653 45677888888888888872111 


Q ss_pred             hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec
Q 008940          239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID  318 (548)
Q Consensus       239 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~  318 (548)
                        .   ..+                              -+.+.++....+..++.+.....++..++.......+.+.-
T Consensus       462 --~---~~v------------------------------~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~  506 (700)
T KOG2137|consen  462 --K---AAV------------------------------LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMA  506 (700)
T ss_pred             --H---HHh------------------------------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeeh
Confidence              1   010                              01233444555557888888888888888765554467777


Q ss_pred             CCchHHHHHhhcCCCC
Q 008940          319 GGGLELLLGLLGSTNP  334 (548)
Q Consensus       319 ~~~i~~L~~ll~~~~~  334 (548)
                      ++.+|.++.+...+.-
T Consensus       507 ~~VlPlli~ls~~~~L  522 (700)
T KOG2137|consen  507 ENVLPLLIPLSVAPSL  522 (700)
T ss_pred             hhhhhhhhhhhhcccc
Confidence            8899999888876543

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=89.81  E-value=2.1  Score=37.56  Aligned_cols=145  Identities=17%  Similarity=0.197  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHH
Q 008940           55 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVI  128 (548)
Q Consensus        55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~  128 (548)
                      ...|+..|.-+++ .|+.+..+.+..+--.+.++|..     +.+.+|..++.+++.+..++ +..-..+....++|.++
T Consensus       117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            3556667777776 69999999998776667777762     34578889999999997654 44556666778999999


Q ss_pred             HhhhcCChHHHHHHHHHHHHhhcCCchhHHH---HHh----cCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCCcchhh
Q 008940          129 GLLSSCCSESQREAALLLGQFAATDSDCKVH---IVQ----RGAVRPLI-EMLQSPDVQLREMSAFALGRLAQDMHNQAG  200 (548)
Q Consensus       129 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~----~g~v~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  200 (548)
                      +.+..+++-.+..++.++..+..++...+-.   +-.    ..++..++ ++...+...+.+.+.++--.|+.++..|..
T Consensus       196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l  275 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL  275 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence            9999888777777888887776443221111   100    11222222 223345556777777777777766655543

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=89.44  E-value=12  Score=32.72  Aligned_cols=145  Identities=14%  Similarity=0.134  Sum_probs=86.8

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      .++.++++..+++..++..|+..+..+....--+-     ...+|.++.+..++++.++..|...+..+....+..-..-
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~   83 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR   83 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            45677888888999999999999998886311111     1258889999999999999999999999976544432222


Q ss_pred             HhcCChHHHHHhhhc---CCh-HH---HHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC--------CHHHHHH
Q 008940          119 LAAGALQPVIGLLSS---CCS-ES---QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--------DVQLREM  183 (548)
Q Consensus       119 ~~~g~i~~L~~ll~~---~~~-~~---~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~--------~~~v~~~  183 (548)
                      ... ++..-.++-..   +.. ..   .......+..+...+...|..+     +..++..+...        .+.-...
T Consensus        84 ~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~  157 (187)
T PF12830_consen   84 YSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF  157 (187)
T ss_pred             HHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence            222 23333333221   111 11   3444555666665555555544     34444444332        2334455


Q ss_pred             HHHHHHHhhcC
Q 008940          184 SAFALGRLAQD  194 (548)
Q Consensus       184 a~~~L~~l~~~  194 (548)
                      ...+..||+.-
T Consensus       158 ~~Fla~nLA~l  168 (187)
T PF12830_consen  158 LLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHhcC
Confidence            56666666643

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.33  E-value=3.5  Score=42.71  Aligned_cols=105  Identities=17%  Similarity=0.158  Sum_probs=74.7

Q ss_pred             cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940           37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      .|.+..+++...+.+..||.+.+..|..+... ......-+-.+....+..-+.+..+.+|.+|+.+|..+-.+..+-  
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence            36677788888889999999999999999963 333333333446667777777889999999999999996332111  


Q ss_pred             HHHhcCChHHHHHhhh-cCChHHHHHHHHHHH
Q 008940          117 EVLAAGALQPVIGLLS-SCCSESQREAALLLG  147 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~  147 (548)
                         +..++..+..+++ +++++|++.+...+.
T Consensus       161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence               1245667777776 466889887665443

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=89.30  E-value=20  Score=35.68  Aligned_cols=130  Identities=16%  Similarity=0.198  Sum_probs=93.4

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhhcCCh---hHHHHHHhcCChHHHHHhhhcCC-----hH--HHHHHHHHHHHhhcCC
Q 008940           84 TLILMLRSEDSAIHYEAVGVIGNLVHSSP---NIKKEVLAAGALQPVIGLLSSCC-----SE--SQREAALLLGQFAATD  153 (548)
Q Consensus        84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~-----~~--~~~~a~~~L~~l~~~~  153 (548)
                      .+..+++..+.+-|-.|+.....++.+.+   ..++.+.+.-+.+.+-+++.+.+     ++  .+..++..|..+|+. 
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-   93 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-   93 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence            46677777788888888888888876543   23667888778888888887632     22  445567788888865 


Q ss_pred             chhHH--HHHhcCChHHHHHhhCC-CCHH------HHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC
Q 008940          154 SDCKV--HIVQRGAVRPLIEMLQS-PDVQ------LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS  216 (548)
Q Consensus       154 ~~~~~--~~~~~g~v~~L~~ll~~-~~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~  216 (548)
                      ++...  .++  ..+|.+...+.. .+++      +.+.+-.+|..++..+.....++..|+++.+.++-.-
T Consensus        94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~  163 (698)
T KOG2611|consen   94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL  163 (698)
T ss_pred             hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence            32221  222  367888888864 2332      7788999999999998888889999999998866543

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=89.14  E-value=8.7  Score=33.27  Aligned_cols=143  Identities=15%  Similarity=0.172  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHhhcc-Ccchh----hHhh------hcCChHHHH-HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 008940           54 VQRAAAGALRTLAFK-NDENK----NQIV------ECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA  121 (548)
Q Consensus        54 v~~~a~~~L~~l~~~-~~~~~----~~~~------~~g~i~~Lv-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  121 (548)
                      +|..|+.+|..++.. ++..-    ..+.      ..+.-+.|+ -++.|+++.+|..|+.++..+-.+....-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            577777888777763 11110    0111      122333444 45678999999999999999986643321111111


Q ss_pred             C-------------------ChHHHHHhhhcC-ChHHHHHHHHHHHHhhcCCchhHHHH-HhcCChHHHHHhhCCCCHHH
Q 008940          122 G-------------------ALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHI-VQRGAVRPLIEMLQSPDVQL  180 (548)
Q Consensus       122 g-------------------~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~g~v~~L~~ll~~~~~~v  180 (548)
                      .                   .-..|+..++.+ +..+......++..+....|..+-.. .-..++..+..++.+.|+.+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   123444445444 46677788889999988777655421 11234445555667789999


Q ss_pred             HHHHHHHHHHhhcCCc
Q 008940          181 REMSAFALGRLAQDMH  196 (548)
Q Consensus       181 ~~~a~~~L~~l~~~~~  196 (548)
                      +..++.+++.+....+
T Consensus       162 ~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  162 RVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999998875543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.05  E-value=3.6  Score=42.61  Aligned_cols=103  Identities=20%  Similarity=0.166  Sum_probs=73.2

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940          164 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI  243 (548)
Q Consensus       164 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  243 (548)
                      |.+..++.-..+++..||..++..|.-+.........-+-.+....+..-+.+..+.|+..|+.+|+.+-..+..     
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-----  159 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-----  159 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-----
Confidence            455555555667888999999999999887554455555556667777778888999999999999999643221     


Q ss_pred             HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHh
Q 008940          244 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALAL  303 (548)
Q Consensus       244 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL  303 (548)
                                                      -+..++..+..+++. ++++||..|+..+
T Consensus       160 --------------------------------ee~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  160 --------------------------------EECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             --------------------------------CcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence                                            012355666777776 7788888765544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.52  E-value=3.1  Score=44.56  Aligned_cols=156  Identities=17%  Similarity=0.211  Sum_probs=105.8

Q ss_pred             HHHHHhhhChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChH--HHHHHhccCCh-
Q 008940           19 AITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP--TLILMLRSEDS-   94 (548)
Q Consensus        19 ~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~--~Lv~ll~~~~~-   94 (548)
                      +|.+.+..+++....+.+.|++..+.+.++. ...+.+..++..+.+++.. .+.+........+.  .+-.++...+. 
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~-~~~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEV-LELRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            6778898999999999999999999999985 4588999999999999973 33333222221222  33334444444 


Q ss_pred             HHHHHHHHHHHHhhcCChh---------HHHHHHh--------------cCChHH-HHHhhhc-CChHHHHHHHHHHHHh
Q 008940           95 AIHYEAVGVIGNLVHSSPN---------IKKEVLA--------------AGALQP-VIGLLSS-CCSESQREAALLLGQF  149 (548)
Q Consensus        95 ~v~~~a~~~L~~l~~~~~~---------~~~~~~~--------------~g~i~~-L~~ll~~-~~~~~~~~a~~~L~~l  149 (548)
                      +.-..++.+|..+..++++         ..+.+.+              ...+.. +..++.. ..+..+.+|+|++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            7777888888888765331         1111111              111222 4444443 4467889999999999


Q ss_pred             hcCCchhHHHHHhcCChHHHHHhhCC
Q 008940          150 AATDSDCKVHIVQRGAVRPLIEMLQS  175 (548)
Q Consensus       150 ~~~~~~~~~~~~~~g~v~~L~~ll~~  175 (548)
                      ...++++...+.+.|+++.+...-..
T Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (699)
T KOG3665|consen  653 LEQNKEYCKLVRESNGFELIENIRVL  678 (699)
T ss_pred             HHcChhhhhhhHhccchhhhhhcchh
Confidence            99988888888888888877666443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=88.32  E-value=16  Score=37.91  Aligned_cols=166  Identities=21%  Similarity=0.140  Sum_probs=93.9

Q ss_pred             hhccCCHHHHHHHHHHHHHhhccCcchhhHhhh---cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhc-
Q 008940           46 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE---CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-  121 (548)
Q Consensus        46 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-  121 (548)
                      .+..-..+.+.-|+-+|+.+..+...+-.....   ...+..++..++ .++.-+..++++|.|+..+ +..++.+... 
T Consensus       552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~  629 (745)
T KOG0301|consen  552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRL  629 (745)
T ss_pred             HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHH
Confidence            333445677888888888888753333332221   224445555555 5678888999999999877 5555555443 


Q ss_pred             -CChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCC
Q 008940          122 -GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       122 -g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~  195 (548)
                       ..+..+.+.-..++..++...+....|.+.   ...+.-.+.+..+.+...+..     ++-+.....+.||++|+..+
T Consensus       630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv---~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~  706 (745)
T KOG0301|consen  630 ESILDPVIEASSLSNKNLQIALATLALNYSV---LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD  706 (745)
T ss_pred             HHHhhhhhhhhcccchhHHHHHHHHHHHHHH---HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence             122222222222333444333333333321   011111124555555555542     23345667788999999988


Q ss_pred             cchhhhHhcCChHHHHHhhcC
Q 008940          196 HNQAGIAHNGGLVPLLKLLDS  216 (548)
Q Consensus       196 ~~~~~~~~~~~l~~L~~ll~~  216 (548)
                      ....++...-.+..+..-+++
T Consensus       707 ~~~~~~A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  707 ASVIQLAKNRSVDSIAKKLKE  727 (745)
T ss_pred             HHHHHHHHhcCHHHHHHHHHH
Confidence            887777777777777777664

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=88.23  E-value=27  Score=34.36  Aligned_cols=150  Identities=14%  Similarity=0.127  Sum_probs=79.3

Q ss_pred             HHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHh
Q 008940          116 KEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRL  191 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll---~~~~~~v~~~a~~~L~~l  191 (548)
                      ..+.+..-...+-+-+..++ ..-++.|+..|..++...+.....++. +.+..++.-.   .+.++.-+..|+..++.+
T Consensus       204 ~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~al  282 (370)
T PF08506_consen  204 EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGAL  282 (370)
T ss_dssp             HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHH
Confidence            44445555555555555444 345667777888887442222111111 2233222211   135677888999999999


Q ss_pred             hcCCcchh-------------hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhh
Q 008940          192 AQDMHNQA-------------GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIV  258 (548)
Q Consensus       192 ~~~~~~~~-------------~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~  258 (548)
                      +.......             .+.....+|.|. --.+..|-++..|+..+..+-..-. ...+                
T Consensus       283 a~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-~~~l----------------  344 (370)
T PF08506_consen  283 ASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-KEQL----------------  344 (370)
T ss_dssp             HBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH----------------
T ss_pred             HhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-HHHH----------------
Confidence            96653321             111222223222 0113346677777777776654311 1111                


Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHh
Q 008940          259 QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL  303 (548)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL  303 (548)
                                         .++++.++.+|.+++.-|+..|+.++
T Consensus       345 -------------------~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  345 -------------------LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             -------------------HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence                               23788999999999999999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.01  E-value=1.4  Score=39.37  Aligned_cols=82  Identities=20%  Similarity=0.181  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhhhChhhHHHHHhcCC-------chHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhh-hcCCh
Q 008940           12 VIRRAADAITNLAHENSSIKTRVRMEGG-------IPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNAL   82 (548)
Q Consensus        12 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~-------i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i   82 (548)
                      -|+.|+.+|.+|+ -.+.|...+...+-       +..|++++. ..++-.|+.|+..|.+++.++......+. +.+.+
T Consensus       140 PqrlaLEaLcKLs-V~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  140 PQRLALEALCKLS-VIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             HHHHHHHHHHHhh-eeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            3899999999999 45666666666664       344455554 45688999999999999997666554444 56889


Q ss_pred             HHHHHHhccCCh
Q 008940           83 PTLILMLRSEDS   94 (548)
Q Consensus        83 ~~Lv~ll~~~~~   94 (548)
                      ..|+.++.+.+.
T Consensus       219 ~~Li~FiE~a~~  230 (257)
T PF12031_consen  219 SHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999985533

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=87.73  E-value=0.65  Score=35.05  Aligned_cols=71  Identities=18%  Similarity=0.140  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          280 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       280 ~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      .+...+..+.++.+.+|..++..|.++..... .......+.+..+...++++++-|-.+|..+|..|+...
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~   74 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH   74 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence            34556677788889999999999999987666 222333466788888999999999999999999998853

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=87.66  E-value=22  Score=34.47  Aligned_cols=158  Identities=14%  Similarity=0.152  Sum_probs=111.9

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhc-cCcchhhHhhhc-CC-hHHHHHHhcc-----CC--------hHHHHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVEC-NA-LPTLILMLRS-----ED--------SAIHYEAVGV  103 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-g~-i~~Lv~ll~~-----~~--------~~v~~~a~~~  103 (548)
                      +..+-+.|++....+...+++.|..++. .+......+.+. +. .+.+.+++..     .+        +.+|...++.
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6677778888888888899999999998 554555555543 33 4456666631     11        2888888887


Q ss_pred             HHHhhc-CChhHHHHHH-hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc----hhHHHHHhcCChHHHHHhhCCCC
Q 008940          104 IGNLVH-SSPNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS----DCKVHIVQRGAVRPLIEMLQSPD  177 (548)
Q Consensus       104 L~~l~~-~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~g~v~~L~~ll~~~~  177 (548)
                      +..+.. .++..+..+. +.+.+..+.+-+..++.++....+.+|..-.-.++    ..+..+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            766654 3455555555 55678888898988888888888888875332322    33345566678888999888777


Q ss_pred             H----HHHHHHHHHHHHhhcCCcc
Q 008940          178 V----QLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       178 ~----~v~~~a~~~L~~l~~~~~~  197 (548)
                      +    .+++.+-..|..+|.++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCc
Confidence            6    8899999999999977654

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=87.37  E-value=4.6  Score=34.52  Aligned_cols=111  Identities=15%  Similarity=0.187  Sum_probs=71.9

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhc--CChHHHHHHhccC-ChHHHHHHHHHHHHhh---cCCh
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSE-DSAIHYEAVGVIGNLV---HSSP  112 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv~ll~~~-~~~v~~~a~~~L~~l~---~~~~  112 (548)
                      .+..+..+|++.++.-|..++..+...+..++  .+.+.+.  ..+..++..|+.+ ...+++.++.+|..|.   .+.+
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            34567788899999999999999999986432  3444343  2578888999865 4567888888887774   3445


Q ss_pred             hHHHHHHhc---CChHHHHHhhhcCChHHHHHHHHHHHHhhcCC
Q 008940          113 NIKKEVLAA---GALQPVIGLLSSCCSESQREAALLLGQFAATD  153 (548)
Q Consensus       113 ~~~~~~~~~---g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  153 (548)
                      +..+.+...   ++++.+++++++  ......++.+|..+....
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH  145 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence            544444433   334455555543  455566666666665443

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=87.34  E-value=2.6  Score=37.67  Aligned_cols=82  Identities=22%  Similarity=0.257  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHhhccCcchhhHhhhcCC-------hHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHH-HHHHhcCC
Q 008940           53 KVQRAAAGALRTLAFKNDENKNQIVECNA-------LPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGA  123 (548)
Q Consensus        53 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-------i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~  123 (548)
                      .-|..|+++|.+++- .+.|.+.+...+-       +..|++++. .++...|+.|+-+|.+++..+.... ....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            458999999999997 5778877766543       444555665 4688899999999999998877654 55556789


Q ss_pred             hHHHHHhhhcCC
Q 008940          124 LQPVIGLLSSCC  135 (548)
Q Consensus       124 i~~L~~ll~~~~  135 (548)
                      |..|+.++.+.+
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999997644

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins

Probab=87.31  E-value=0.6  Score=35.94  Aligned_cols=53  Identities=15%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             CcchhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHH
Q 008940            3 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR   56 (548)
Q Consensus         3 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~   56 (548)
                      +..|+.++--+......+..|+ ..|+....+.+.|+++.|+.+|.++|.++..
T Consensus        53 P~KFmdSE~dLd~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai  105 (108)
T PF08216_consen   53 PEKFMDSEVDLDEEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDIAI  105 (108)
T ss_pred             HHHHHHhHHHHHHHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence            3456777777788899999999 6788899999999999999999999876643

A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=87.25  E-value=25  Score=32.64  Aligned_cols=159  Identities=21%  Similarity=0.191  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhhcCCcch--------hhhHhcCChHHHHHhhcCCC----hhHHHHHHHHHHhcccCC--cchHHHHH
Q 008940          179 QLREMSAFALGRLAQDMHNQ--------AGIAHNGGLVPLLKLLDSKN----GSLQHNAAFALYGLADNE--DNVADFIR  244 (548)
Q Consensus       179 ~v~~~a~~~L~~l~~~~~~~--------~~~~~~~~l~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~--~~~~~~~~  244 (548)
                      ...+.+...|..|...+...        -.+.-.+.+|.++.-+++++    ......++..|+.+|...  .+..++..
T Consensus        77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~  156 (262)
T PF14225_consen   77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILS  156 (262)
T ss_pred             CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            46667777788777554331        11222233455555555555    134456778888888532  22222211


Q ss_pred             hcCcccccccchhhhhhhHHHHHHHHHHHH----hhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCC
Q 008940          245 VGGVQKLQDGEFIVQATKDCVAKTLKRLEE----KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG  320 (548)
Q Consensus       245 ~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~  320 (548)
                           ...+..|  .............+.+    ..+...+..|+.+|.++.+.+|..+...|..+....+.++. ...+
T Consensus       157 -----~ya~~~f--r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~d  228 (262)
T PF14225_consen  157 -----SYAKGRF--RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGAD  228 (262)
T ss_pred             -----HHHhcCC--CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchH
Confidence                 1122222  2222333333333333    33566888899999999999999999999999876554443 5567


Q ss_pred             chHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940          321 GLELLLGLLGSTNPKQQLDGAVALFKLA  348 (548)
Q Consensus       321 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~  348 (548)
                      .+..+.++++++.-   ..|...|-+..
T Consensus       229 lispllrlL~t~~~---~eAL~VLd~~v  253 (262)
T PF14225_consen  229 LISPLLRLLQTDLW---MEALEVLDEIV  253 (262)
T ss_pred             HHHHHHHHhCCccH---HHHHHHHHHHH
Confidence            88999999976533   34555554443

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=87.06  E-value=26  Score=32.60  Aligned_cols=150  Identities=16%  Similarity=0.116  Sum_probs=82.4

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc--CChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      ..|-..|.++++.+|.+|+..|..+...-+...   ....-+..|+.+..+  .|......++..+..|.....-.... 
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence            345667889999999999999998886433221   222235666666542  34455555566666665321110011 


Q ss_pred             HhcCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC
Q 008940          119 LAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       119 ~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~  195 (548)
                       ....+..+.+-..  +.....|..+-..+..+........ .-...+.+..+++.+.. .||+-...+...+..+...-
T Consensus        78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~  155 (262)
T PF14500_consen   78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF  155 (262)
T ss_pred             -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence             0011222222111  1224466777777777764422222 11224567777777775 58887777777777666443


Q ss_pred             c
Q 008940          196 H  196 (548)
Q Consensus       196 ~  196 (548)
                      +
T Consensus       156 ~  156 (262)
T PF14500_consen  156 D  156 (262)
T ss_pred             c
Confidence            3

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=86.81  E-value=29  Score=35.54  Aligned_cols=107  Identities=21%  Similarity=0.258  Sum_probs=74.3

Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940           80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  159 (548)
Q Consensus        80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  159 (548)
                      |.+..+++.+.+++..+|..++.+|+.+...-.++ +...-.|.+..|..-+-+..+.++..|+.+|+.+-.. ..+.. 
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~-~~nee-  167 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM-ELNEE-  167 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCChH-
Confidence            46677777778899999999999999997544444 3445567888888888888899999999999988532 22211 


Q ss_pred             HHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC
Q 008940          160 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~  195 (548)
                         ......|...++. ++.+||..|   +.|+..++
T Consensus       168 ---n~~~n~l~~~vqnDPS~EVRr~a---llni~vdn  198 (885)
T COG5218         168 ---NRIVNLLKDIVQNDPSDEVRRLA---LLNISVDN  198 (885)
T ss_pred             ---HHHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence               1233466666664 566788765   45555443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=86.69  E-value=34  Score=33.62  Aligned_cols=91  Identities=18%  Similarity=0.222  Sum_probs=60.0

Q ss_pred             chHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC-Ch-HHHHHHHHHHHHhhcCChhHHH
Q 008940           40 IPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DS-AIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        40 i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~-~~-~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      +..+++-+++ ....+|..++.-|..-+. +++.+..+..+|..+.+++.+.+. +. .....++.++.-++.+... -.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~-~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN-MH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc-hh
Confidence            4456666653 346788888888888886 799999999999999999999643 33 3333444455555544332 23


Q ss_pred             HHHhcCChHHHHHhhh
Q 008940          117 EVLAAGALQPVIGLLS  132 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~  132 (548)
                      .+...+....+++++.
T Consensus       101 l~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhhchhHHHHHHHHhc
Confidence            3334455666677776

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=86.12  E-value=27  Score=31.88  Aligned_cols=129  Identities=22%  Similarity=0.194  Sum_probs=82.6

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ...+|+.+...+..|..++..+..+..     -++..|..+.+.+..+.+..+.+.+..+-..++...      +.++.+
T Consensus        11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~   79 (234)
T PF12530_consen   11 KISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPL   79 (234)
T ss_pred             CCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHH
Confidence            355678899999999999954412222     233456666777777777777777777776433332      334444


Q ss_pred             HHHh--c--------cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhh
Q 008940           86 ILML--R--------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFA  150 (548)
Q Consensus        86 v~ll--~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~  150 (548)
                      +..+  +        +...+........+..++...++.     ....++.+..++ .+.++.++..++.++..+|
T Consensus        80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc  150 (234)
T PF12530_consen   80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEALAPLC  150 (234)
T ss_pred             HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            4431  1        123344455556777777766662     223577888888 6777888888999999998

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=86.09  E-value=5.7  Score=30.31  Aligned_cols=94  Identities=13%  Similarity=0.093  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHhhhChh-hHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940           11 SVIRRAADAITNLAHENSS-IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML   89 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll   89 (548)
                      ++|.+|+..|-.=-...-- ........+.+..|++..+.+.......++..+..+.. ++.....+.+.|+.+.|-++-
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr   80 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR   80 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence            5677777664433222221 12222345667788888888887899999999999997 688888888899888876666


Q ss_pred             ccCChHHHHHHHHHHH
Q 008940           90 RSEDSAIHYEAVGVIG  105 (548)
Q Consensus        90 ~~~~~~v~~~a~~~L~  105 (548)
                      ...++..+...-.++.
T Consensus        81 ~~~~~~~~~~id~il~   96 (98)
T PF14726_consen   81 PNVEPNLQAEIDEILD   96 (98)
T ss_pred             hcCCHHHHHHHHHHHh
Confidence            6566666666555543

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=85.98  E-value=0.54  Score=43.95  Aligned_cols=55  Identities=22%  Similarity=0.396  Sum_probs=45.0

Q ss_pred             hcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcc-hhHhchhhcHHHH
Q 008940          476 QDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRP-GHSNLIQRIIPEI  530 (548)
Q Consensus       476 ~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~-~f~~l~~~~~~~~  530 (548)
                      ..++++|++.++--++....+.|.+.|+.|+..|+.+|++++ ++.-++.+++..|
T Consensus        70 p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL  125 (317)
T PF11822_consen   70 PSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL  125 (317)
T ss_pred             CcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence            368999999999999999999999999999999999999865 3445544443333

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=85.35  E-value=7.5  Score=36.35  Aligned_cols=159  Identities=18%  Similarity=0.183  Sum_probs=89.3

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcC--ChHHHHHHhc----cCChHHHHHHHHHHHHhhcCChhHHH
Q 008940           43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~Lv~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      +..++.+=..+-+.-++-.++-++. ++.....+...+  +...+..++.    ...+..+..++++++|+...... +.
T Consensus        68 ~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~  145 (268)
T PF08324_consen   68 LLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG-RQ  145 (268)
T ss_dssp             HHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HH
T ss_pred             HHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HH
Confidence            3333333233446666777766665 355444444432  2445555554    24678889999999999876444 45


Q ss_pred             HHHhc-C-ChHHHHHhhhcC----ChHHHHHHHHHHHHhhcCCchhH-HHHHhcCChHHHHHhh-CC-CCHHHHHHHHHH
Q 008940          117 EVLAA-G-ALQPVIGLLSSC----CSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEML-QS-PDVQLREMSAFA  187 (548)
Q Consensus       117 ~~~~~-g-~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~v~~L~~ll-~~-~~~~v~~~a~~~  187 (548)
                      .+... + .+-..+..+...    +..++..++..+.|++......+ ..-....++..+.+.+ .. .+++....++-+
T Consensus       146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA  225 (268)
T PF08324_consen  146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA  225 (268)
T ss_dssp             HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred             HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence            55543 2 233333323332    56678888888888873311111 0001112455566633 33 688999999999


Q ss_pred             HHHhhcCCcchhhhHh
Q 008940          188 LGRLAQDMHNQAGIAH  203 (548)
Q Consensus       188 L~~l~~~~~~~~~~~~  203 (548)
                      |+++...+........
T Consensus       226 lGtL~~~~~~~~~~~~  241 (268)
T PF08324_consen  226 LGTLLSSSDSAKQLAK  241 (268)
T ss_dssp             HHHHHCCSHHHHHHCC
T ss_pred             HHHHhccChhHHHHHH
Confidence            9999966655444444

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=85.31  E-value=17  Score=38.12  Aligned_cols=133  Identities=14%  Similarity=0.066  Sum_probs=88.2

Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940           80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKV  158 (548)
Q Consensus        80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~  158 (548)
                      .+++.|...+++.+..+|+.++..+...+..-+   -..+..-++|.+..+. ...+..++.+++.++..+.    +..+
T Consensus       389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~lD  461 (700)
T KOG2137|consen  389 KILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QRLD  461 (700)
T ss_pred             HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----HHHH
Confidence            466666777778888999999999988864322   3455566788887764 4456778889999998886    1111


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCCh
Q 008940          159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG  219 (548)
Q Consensus       159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~  219 (548)
                      ...-...+.++....+..+|.+......+..++.........+.....+|.++.+...+.-
T Consensus       462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L  522 (700)
T KOG2137|consen  462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSL  522 (700)
T ss_pred             HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccc
Confidence            1111123444555556678899888888888887665553344444677777777665543

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=85.21  E-value=18  Score=38.60  Aligned_cols=168  Identities=20%  Similarity=0.147  Sum_probs=90.5

Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc----CChHHHHHHHHHHHHhhcCCchh-
Q 008940           82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLGQFAATDSDC-  156 (548)
Q Consensus        82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~-  156 (548)
                      +..+.+++......- ..+...|..+......--.     ..+..+..+++.    .++.++..|..+++.+....-.. 
T Consensus       397 v~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~  470 (618)
T PF01347_consen  397 VKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS  470 (618)
T ss_dssp             HHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence            445556666533222 2244445554332211111     134455555553    34557777777777665321111 


Q ss_pred             --------HHHHHhcCChHHHHHhhC----CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC---ChhH
Q 008940          157 --------KVHIVQRGAVRPLIEMLQ----SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK---NGSL  221 (548)
Q Consensus       157 --------~~~~~~~g~v~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v  221 (548)
                              ........+++.+...+.    .++..-+..++.+|+|+...          ..++.+..++...   ...+
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~  540 (618)
T PF01347_consen  471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFI  540 (618)
T ss_dssp             ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHH
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHH
Confidence                    111222346666666665    45667888999999999532          2466677777665   5678


Q ss_pred             HHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh--hhhhhhhhH
Q 008940          222 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRV  299 (548)
Q Consensus       222 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~a  299 (548)
                      +..|+++|.+++.....                                        .+.+.++.+..+  .++++|.+|
T Consensus       541 R~~Ai~Alr~~~~~~~~----------------------------------------~v~~~l~~I~~n~~e~~EvRiaA  580 (618)
T PF01347_consen  541 RVAAIQALRRLAKHCPE----------------------------------------KVREILLPIFMNTTEDPEVRIAA  580 (618)
T ss_dssp             HHHHHHTTTTGGGT-HH----------------------------------------HHHHHHHHHHH-TTS-HHHHHHH
T ss_pred             HHHHHHHHHHHhhcCcH----------------------------------------HHHHHHHHHhcCCCCChhHHHHH
Confidence            88899999988654321                                        144566666665  567888888


Q ss_pred             HHHhhh
Q 008940          300 ALALAH  305 (548)
Q Consensus       300 ~~aL~~  305 (548)
                      ..+|..
T Consensus       581 ~~~lm~  586 (618)
T PF01347_consen  581 YLILMR  586 (618)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777654

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=85.19  E-value=12  Score=40.19  Aligned_cols=167  Identities=17%  Similarity=0.189  Sum_probs=106.0

Q ss_pred             chhhHhhhcCChHHHHHHhcc--------CChHHHHHHHHHHHHhhcCChhHHHHHHhc--------CChHHHHHhhhc-
Q 008940           71 ENKNQIVECNALPTLILMLRS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--------GALQPVIGLLSS-  133 (548)
Q Consensus        71 ~~~~~~~~~g~i~~Lv~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~ll~~-  133 (548)
                      ...+.+.+.+++..++.+...        +..++...|+.+|+-+..- |.++..+...        .++..++..... 
T Consensus       592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~  670 (1516)
T KOG1832|consen  592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGS  670 (1516)
T ss_pred             hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccc
Confidence            455677888889999888863        2346777888888877654 6666655532        255555554432 


Q ss_pred             ---CChHHHHHHHHHHHHhhcCCchhHHHHHhc-CC---hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCC
Q 008940          134 ---CCSESQREAALLLGQFAATDSDCKVHIVQR-GA---VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG  206 (548)
Q Consensus       134 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~---v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  206 (548)
                         .+++++..|+.++.|+....|.++...... |-   -+.. .+=+.......++.+.-.|+.         +..+.|
T Consensus       671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~-~l~~~~ks~~le~~l~~mw~~---------Vr~ndG  740 (1516)
T KOG1832|consen  671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI-FLGAGTKSAKLEQVLRQMWEA---------VRGNDG  740 (1516)
T ss_pred             ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc-cccCCCchHHHHHHHHHHHHH---------HhcCcc
Confidence               368999999999999987766665433210 00   0000 000011122334444444444         345578


Q ss_pred             hHHHHHhhcCCC-----hhHHHHHHHHHHhcccCCcchHHHHHhcCc
Q 008940          207 LVPLLKLLDSKN-----GSLQHNAAFALYGLADNEDNVADFIRVGGV  248 (548)
Q Consensus       207 l~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i  248 (548)
                      +..|+++|+-.+     ..++..||.+|..|++++..++.+.+.-++
T Consensus       741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLv  787 (1516)
T KOG1832|consen  741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLV  787 (1516)
T ss_pred             HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccc
Confidence            999999998554     468899999999999999988877665433

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=85.03  E-value=3.7  Score=35.09  Aligned_cols=116  Identities=22%  Similarity=0.171  Sum_probs=73.0

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcC--ChHHHHHhhcCCC-hhHHHHHHHHHHhcccCCcchH
Q 008940          164 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG--GLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVA  240 (548)
Q Consensus       164 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~  240 (548)
                      ..+..+..+++++++.-|..++..+.-.+...+. ..+.+.+  .+..++..++..+ +.+.+.++.+|..+...-....
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            3566788889999999999888888888766432 2332322  3556778887654 5677888888888865444433


Q ss_pred             HHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940          241 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  308 (548)
Q Consensus       241 ~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~  308 (548)
                      .+.+....|.+.                          .+++.++.+++.  ......++.+|..+..
T Consensus       104 ~l~Rei~tp~l~--------------------------~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  104 TLTREIATPNLP--------------------------KFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             chHHHHhhccHH--------------------------HHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence            443333333321                          255666666654  4556666777766643

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=84.79  E-value=5.7  Score=33.70  Aligned_cols=143  Identities=11%  Similarity=0.119  Sum_probs=77.3

Q ss_pred             CchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           39 GIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        39 ~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      .++.|.++|+.+ +..+|.+++++|+.+..-+|...+.+....-  .-.  -.+.+......... ..+....    .+.
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~~l~-~~~~~~~----~ee   81 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDISLP-MMGISPS----SEE   81 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhhHHh-hccCCCc----hHH
Confidence            345677778765 5999999999999999866655443322111  000  01111111111111 1111111    123


Q ss_pred             HHhcCChHHHHHhhhcCChH-HHHHHHHHHHHhhcC-CchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940          118 VLAAGALQPVIGLLSSCCSE-SQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  192 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  192 (548)
                      ..-..++..|++.|+++.-. -...++.++.++... +..+...+  ..++|.++..++..++..++....-|+.|.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            33334677888888776522 233445555555422 12222222  358899999999877788888777777664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=84.71  E-value=11  Score=38.30  Aligned_cols=71  Identities=21%  Similarity=0.203  Sum_probs=55.8

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940          164 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  234 (548)
Q Consensus       164 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  234 (548)
                      |.+..++.-+.+++..||..++..|.-+...-.......-+|.+..|.+-+-+..+.|+..|+.+|+.+-.
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe  161 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE  161 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence            45566666667789999999999999988665555555666777778877778889999999999998854

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=83.62  E-value=56  Score=33.46  Aligned_cols=71  Identities=20%  Similarity=0.180  Sum_probs=46.2

Q ss_pred             hhhHHHHHHHHh------hhhhhhhhHHHHhhhccCCCc-cc-eeeecCC--chHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940          279 RVLNHLLYLMRV------AEKGVQRRVALALAHLCSPDD-QR-TIFIDGG--GLELLLGLLGSTNPKQQLDGAVALFKLA  348 (548)
Q Consensus       279 ~~~~~L~~ll~~------~~~~~~~~a~~aL~~l~~~~~-~~-~~~~~~~--~i~~L~~ll~~~~~~v~~~a~~~L~~l~  348 (548)
                      ..+..|..+|.+      .+..+...|...+..+..+.. .+ ..+--.-  .++.|...++.+++.+-......+.++.
T Consensus       250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            356777777733      234455677888887765542 22 2222222  6788888888888888778888888877


Q ss_pred             h
Q 008940          349 N  349 (548)
Q Consensus       349 ~  349 (548)
                      .
T Consensus       330 ~  330 (464)
T PF11864_consen  330 D  330 (464)
T ss_pred             h
Confidence            3

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=83.58  E-value=9.9  Score=40.64  Aligned_cols=130  Identities=18%  Similarity=0.166  Sum_probs=79.4

Q ss_pred             HHHHhhcc----CCHHHHHHHHHHHHHhhccCcc---------hhhHhhhcCChHHHHHHhc----cCChHHHHHHHHHH
Q 008940           42 PLVELLEF----TDTKVQRAAAGALRTLAFKNDE---------NKNQIVECNALPTLILMLR----SEDSAIHYEAVGVI  104 (548)
Q Consensus        42 ~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~---------~~~~~~~~g~i~~Lv~ll~----~~~~~v~~~a~~~L  104 (548)
                      .+..++++    .++.++..|+.+++.+....-.         .........+++.+...+.    ..+.+-+..++.+|
T Consensus       435 ~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL  514 (618)
T PF01347_consen  435 ELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKAL  514 (618)
T ss_dssp             HHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHh
Confidence            34555543    3466777888888777642111         1122223346677776665    45678888999999


Q ss_pred             HHhhcCChhHHHHHHhcCChHHHHHhhhcC---ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC--CCHH
Q 008940          105 GNLVHSSPNIKKEVLAAGALQPVIGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQ  179 (548)
Q Consensus       105 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~--~~~~  179 (548)
                      +|+-.  +         ..++.+..++.+.   ...+|..|+++|..++...+..        +.+.+++++.+  .+++
T Consensus       515 gN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~E  575 (618)
T PF01347_consen  515 GNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPE  575 (618)
T ss_dssp             HHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HH
T ss_pred             hccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChh
Confidence            99942  2         2577888887766   5678999999999886544432        34667777765  4678


Q ss_pred             HHHHHHHHHHH
Q 008940          180 LREMSAFALGR  190 (548)
Q Consensus       180 v~~~a~~~L~~  190 (548)
                      +|..|..+|-.
T Consensus       576 vRiaA~~~lm~  586 (618)
T PF01347_consen  576 VRIAAYLILMR  586 (618)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88887666554

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=82.51  E-value=23  Score=35.22  Aligned_cols=131  Identities=13%  Similarity=0.120  Sum_probs=89.1

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCc----chhhhHhcCChHHHHHhhcCCC------h-hHHHHHHHHHHhcccCC
Q 008940          168 PLIEMLQSPDVQLREMSAFALGRLAQDMH----NQAGIAHNGGLVPLLKLLDSKN------G-SLQHNAAFALYGLADNE  236 (548)
Q Consensus       168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~l~~L~~ll~~~~------~-~v~~~a~~~L~~l~~~~  236 (548)
                      .+..+...++.+-+-.++.....++.+.+    +++.+.+.-|.+-+-+++.+++      + -.+.-++..|..+|+.+
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35666666666777888888888886654    3555777777777778886543      2 34456677888888877


Q ss_pred             cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhh------hhhhHHHHhhhccCC
Q 008940          237 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKG------VQRRVALALAHLCSP  309 (548)
Q Consensus       237 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~------~~~~a~~aL~~l~~~  309 (548)
                      +-...-.                               +  -+-+|.|+.++.. .+++      +...+-.+|..++..
T Consensus        95 ElAsh~~-------------------------------~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~  141 (698)
T KOG2611|consen   95 ELASHEE-------------------------------M--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA  141 (698)
T ss_pred             hhccCHH-------------------------------H--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC
Confidence            5421110                               0  0145677777766 3444      566777788888888


Q ss_pred             CccceeeecCCchHHHHHhhcC
Q 008940          310 DDQRTIFIDGGGLELLLGLLGS  331 (548)
Q Consensus       310 ~~~~~~~~~~~~i~~L~~ll~~  331 (548)
                      +.+.+.++..|+++.+.++-.-
T Consensus       142 e~G~~~Lia~G~~~~~~Q~y~~  163 (698)
T KOG2611|consen  142 EAGLMTLIASGGLRVIAQMYEL  163 (698)
T ss_pred             CchhHHHHhcCchHHHHHHHhC
Confidence            8888889999999999876553

>KOG2676 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.24  E-value=1.6  Score=41.01  Aligned_cols=64  Identities=19%  Similarity=0.100  Sum_probs=55.8

Q ss_pred             HHHHHHHHhhhChhhHHHHHhcCCchHHHHhh--ccCCHHHHHHHHHHHHHhhccCcchhhHhhhc
Q 008940           16 AADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVEC   79 (548)
Q Consensus        16 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   79 (548)
                      ..+.++.+|+.+++++..+.+.||++.++.-.  .+.+|-+++..+.+++.+...|.+|++.+.+.
T Consensus       376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km  441 (478)
T KOG2676|consen  376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM  441 (478)
T ss_pred             HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence            55688999999999999999999999888744  45679999999999999999888998887654

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=81.79  E-value=14  Score=28.20  Aligned_cols=92  Identities=15%  Similarity=0.122  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhhccCcchhhHhh-hcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh
Q 008940           53 KVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL  131 (548)
Q Consensus        53 ~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll  131 (548)
                      ++|.+|+.-+..=-.++--....+. ..+.+..|+...+.++......++..+..++.. +.....+.+-|+...|.++-
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr   80 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLR   80 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHH
Confidence            5666666544332222233333333 345677888888888888999999999999876 54457888889898877777


Q ss_pred             hcCChHHHHHHHHH
Q 008940          132 SSCCSESQREAALL  145 (548)
Q Consensus       132 ~~~~~~~~~~a~~~  145 (548)
                      ...++..+...-..
T Consensus        81 ~~~~~~~~~~id~i   94 (98)
T PF14726_consen   81 PNVEPNLQAEIDEI   94 (98)
T ss_pred             hcCCHHHHHHHHHH
Confidence            66666555444333

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=81.72  E-value=28  Score=30.16  Aligned_cols=156  Identities=19%  Similarity=0.160  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHhhcCCcchhhh------------HhcCC-hHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940          180 LREMSAFALGRLAQDMHNQAGI------------AHNGG-LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG  246 (548)
Q Consensus       180 v~~~a~~~L~~l~~~~~~~~~~------------~~~~~-l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g  246 (548)
                      +|..|+.+|..+++..+.+...            ...+. ...+.-++.++++.+|..|+.+|..+-.+...--...+.-
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            6778888888888763333111            11122 2334566678899999999999999987653322222211


Q ss_pred             CcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCCc-cceeeecCCchH-
Q 008940          247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLE-  323 (548)
Q Consensus       247 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~i~-  323 (548)
                      --+   ...|..-      ...+..+-    ...-..|+..++. .+..+....+.++..++.... +|-   ..|.++ 
T Consensus        82 ~~~---~~sFtsl------S~tLa~~i----~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~  145 (182)
T PF13251_consen   82 KGP---SGSFTSL------SSTLASMI----MELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTE  145 (182)
T ss_pred             CCC---CCCcccH------HHHHHHHH----HHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHH
Confidence            100   0111100      00111110    1123445555655 577788888999999987655 331   234444 


Q ss_pred             ---HHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          324 ---LLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       324 ---~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                         .+..++.+.|++++..+..++..+..-.
T Consensus       146 ~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  146 VVTQVRPLLRHRDPNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence               4455677899999999999998887643

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=81.16  E-value=26  Score=36.93  Aligned_cols=150  Identities=15%  Similarity=0.148  Sum_probs=94.3

Q ss_pred             cCChHHHHHhhhc-----CC---hHHHHHHHHHHHHhhc--CCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 008940          121 AGALQPVIGLLSS-----CC---SESQREAALLLGQFAA--TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  190 (548)
Q Consensus       121 ~g~i~~L~~ll~~-----~~---~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~  190 (548)
                      .|.++.++..+..     ++   ..-.+-|.+.++++.+  ..+....-+.+.=+++.+++.++++.--++..+|..+..
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            5788888888832     12   2233445556666544  223333345555577778888888887899999999999


Q ss_pred             hhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHh--cCccccc--ccchhhhhhhHHHH
Q 008940          191 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV--GGVQKLQ--DGEFIVQATKDCVA  266 (548)
Q Consensus       191 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--g~i~~L~--~~~~~~~~~~~~~~  266 (548)
                      +..+-....  .-..+.+.....+++.+-.++..|+.+|.-+..+...-..+.++  +..+.|+  ...|.++....|+.
T Consensus       487 ~eeDfkd~~--ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe  564 (970)
T COG5656         487 IEEDFKDNG--ILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVME  564 (970)
T ss_pred             HHHhcccch--HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHH
Confidence            854433322  22235666777888888889999999999887776555555443  2333333  24556666666665


Q ss_pred             HHHHHH
Q 008940          267 KTLKRL  272 (548)
Q Consensus       267 ~~~~~~  272 (548)
                      .-.+..
T Consensus       565 ~fVe~f  570 (970)
T COG5656         565 SFVEYF  570 (970)
T ss_pred             HHHHHh
Confidence            555444

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.86  E-value=50  Score=36.51  Aligned_cols=263  Identities=15%  Similarity=0.132  Sum_probs=139.5

Q ss_pred             HHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC---
Q 008940           59 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC---  135 (548)
Q Consensus        59 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~---  135 (548)
                      -.+|..+...+.+|...+.+.+++..+++++-  +++-|.-.++++..|....+...    ...-+-.++..|++.-   
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~  736 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTR  736 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceec
Confidence            34566677777888888888888888888773  45566666777766655444310    0112334555555521   


Q ss_pred             ---------hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC----------CCHHHHH---HHHHHHH--Hh
Q 008940          136 ---------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----------PDVQLRE---MSAFALG--RL  191 (548)
Q Consensus       136 ---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~----------~~~~v~~---~a~~~L~--~l  191 (548)
                               .........+++.+.-.+...+..+.+.++...|...|..          +|.-+-.   ..+.-+.  .+
T Consensus       737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav  816 (2799)
T KOG1788|consen  737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV  816 (2799)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence                     1234445567777766666777888889998888877631          1211111   1112222  23


Q ss_pred             hcCCcchhhhHhcCChHHHHHhhcCCC---hhHHHHHHHHHHhcc----cCCcchHHHHHhcCcccccccchhhhhhhHH
Q 008940          192 AQDMHNQAGIAHNGGLVPLLKLLDSKN---GSLQHNAAFALYGLA----DNEDNVADFIRVGGVQKLQDGEFIVQATKDC  264 (548)
Q Consensus       192 ~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~~~a~~~L~~l~----~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~  264 (548)
                      |.++.++..+...-.-+.+..+|....   .+..++....|..++    ..+.-........-+..+-+..|...+..- 
T Consensus       817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG-  895 (2799)
T KOG1788|consen  817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG-  895 (2799)
T ss_pred             hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC-
Confidence            455555554433223344555555332   111112222222211    111111222222222222111111000000 


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHHHHhhc
Q 008940          265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLG  330 (548)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll~  330 (548)
                        .-....+.+...+++..++..+-...+..|.+-+..+..+++.. .++......|.++.|++++.
T Consensus       896 --qfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy  960 (2799)
T KOG1788|consen  896 --QFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY  960 (2799)
T ss_pred             --CcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence              00011245677888888888888888999999999999998754 46666666677777776654

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.84  E-value=29  Score=38.14  Aligned_cols=231  Identities=15%  Similarity=0.149  Sum_probs=133.7

Q ss_pred             HHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC----
Q 008940           17 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE----   92 (548)
Q Consensus        17 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~----   92 (548)
                      -.+|..+.+.+.++.+.+.+..|+..++.++-  +.+-|...++.+..+...++....    ..-+-.+++.|+++    
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~  736 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTR  736 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceec
Confidence            56788888899999999999999999988884  445566667777777654443211    11244566666642    


Q ss_pred             --------ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc--------CChH--HHHHHHHHH---HHhh-
Q 008940           93 --------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--------CCSE--SQREAALLL---GQFA-  150 (548)
Q Consensus        93 --------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--------~~~~--~~~~a~~~L---~~l~-  150 (548)
                              ..........+++.+...+...+..+.+.++...|...|..        +..+  +-......|   ..++ 
T Consensus       737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav  816 (2799)
T KOG1788|consen  737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV  816 (2799)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence                    12456677788888877777777888888888888776643        1111  111111111   1111 


Q ss_pred             cCCchhHHHHHhcCChHHHHHhhCC--------------------------CCHHHHHHHHHHHHHhhcC----------
Q 008940          151 ATDSDCKVHIVQRGAVRPLIEMLQS--------------------------PDVQLREMSAFALGRLAQD----------  194 (548)
Q Consensus       151 ~~~~~~~~~~~~~g~v~~L~~ll~~--------------------------~~~~v~~~a~~~L~~l~~~----------  194 (548)
                      ..++.++..+...=.-+.+..+|+.                          ++-.--..|+..+..+-.+          
T Consensus       817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq  896 (2799)
T KOG1788|consen  817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ  896 (2799)
T ss_pred             hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence            1223333322111112222222221                          1111111222222222111          


Q ss_pred             -CcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccc
Q 008940          195 -MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQD  253 (548)
Q Consensus       195 -~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~  253 (548)
                       .+.+..+...|++..+++.+-...+..+..-+..+..+++ ++.+.+.....|.++.|+.
T Consensus       897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellle  957 (2799)
T KOG1788|consen  897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLE  957 (2799)
T ss_pred             cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHH
Confidence             1224556778889889988887888888888888888887 5666666666677766654

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.70  E-value=27  Score=36.59  Aligned_cols=144  Identities=13%  Similarity=0.091  Sum_probs=87.8

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhc-cCcch----hhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHH
Q 008940           41 PPLVELLEFTDTKVQRAAAGALRTLAF-KNDEN----KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK  115 (548)
Q Consensus        41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~----~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  115 (548)
                      |.|.+-|+..|..||..|+..+.++-- .+|+.    ...+++ +-...+.++|.++-+.+|..|..-++.+.+.    -
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----f  251 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK----F  251 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----H
Confidence            344556677899999999999988753 12332    222333 2467888999999999999998887777532    1


Q ss_pred             HHHHhcCChHHHHHhhh-----cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 008940          116 KEVLAAGALQPVIGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  190 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~  190 (548)
                      ..++-...+..++..+.     +...+++-.....|-.+... |..-. +.+ -++|.+-..|.++...||..+...|..
T Consensus       252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~sh~-~le-~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PLSHP-LLE-QLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-ccchh-HHH-HHHHhcchhhhccchhHHHHHHHHHHH
Confidence            22222223333333222     23356666666666666532 32222 111 245666677778888898888777776


Q ss_pred             hh
Q 008940          191 LA  192 (548)
Q Consensus       191 l~  192 (548)
                      +-
T Consensus       329 ik  330 (1005)
T KOG1949|consen  329 IK  330 (1005)
T ss_pred             HH
Confidence            64

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.65  E-value=98  Score=36.80  Aligned_cols=249  Identities=15%  Similarity=0.065  Sum_probs=118.7

Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHH-HHHHHHHHhhcCCchhHHHH
Q 008940           82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR-EAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~-~a~~~L~~l~~~~~~~~~~~  160 (548)
                      ...++..+..+++..+..+..+++.++...+..  .++ .+..+.+.+-+.+..+.+.+ --..+++.+-...-.....-
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            334455566677888888888888887543321  111 11233333334443333333 33345554432211111111


Q ss_pred             HhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch
Q 008940          161 VQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV  239 (548)
Q Consensus       161 ~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  239 (548)
                      .....+..+..+.+++ +|.|+.+++.++..+......-..+.-+..+..+..++.+..+ .....-..+.+.-..++.-
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchhH
Confidence            1123466777777775 5589999999999888655432222222233334444443221 1111111222221111111


Q ss_pred             HHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecC
Q 008940          240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG  319 (548)
Q Consensus       240 ~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~  319 (548)
                      ..+...-| +-|- ..+..+.           . ....+.++....-++.++++.++.++..++.++..-..-  ..--.
T Consensus      1034 ~alittlg-peL~-~N~~~d~-----------t-~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~ 1097 (2067)
T KOG1822|consen 1034 DALITTLG-PELG-PNGDKDS-----------T-STLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLD 1097 (2067)
T ss_pred             HHHHHhcc-cccC-CCCcccc-----------h-hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHH
Confidence            12211110 1110 0000000           0 011122333334445567999999999999988543221  11222


Q ss_pred             CchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          320 GGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       320 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      -.|+.|..++.++.--.|......+..+...
T Consensus      1098 ~lV~~L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1098 SLVLQLCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred             HHHHHHHHHhcchhhhhhhhHHhhhhHHhHH
Confidence            3577888888877666677777777777654

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=80.26  E-value=14  Score=31.32  Aligned_cols=143  Identities=17%  Similarity=0.160  Sum_probs=74.5

Q ss_pred             ChHHHHHHhccC-ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940           81 ALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  159 (548)
Q Consensus        81 ~i~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  159 (548)
                      .++.|+++++.+ +..+|.+++++|+.|-.-+|-..+.+..  ..+.-.  -...+.......... ...    ......
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~--~~~~~~--~~~~~~~~~~~~l~~-~~~----~~~~ee   81 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQK--SLDSKS--SENSNDESTDISLPM-MGI----SPSSEE   81 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccc--cCCccc--cccccccchhhHHhh-ccC----CCchHH
Confidence            466778888754 6899999999999995554443221111  111000  011111111111111 111    111222


Q ss_pred             HHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc
Q 008940          160 IVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL  232 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l  232 (548)
                      ..-..++..|+..|+++.- .-...+..++.++......+-.-.-...++.++..+++.++..++....-|+.|
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3333467788888887532 233456666666664432221112224678888888877777777666666554

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	548
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-19
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-10
3hqi_A	312	Structures Of Spop-Substrate Complexes: Insights In		1e-17
4eoz_A	145	Crystal Structure Of The Spop Btb Domain Complexed		2e-17
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		6e-13
3htm_A	172	Structures Of Spop-Substrate Complexes: Insights In		8e-11
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-10
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		3e-10
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-09
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-09
1ial_A	453	Importin Alpha, Mouse Length = 453		2e-06
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-09
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		3e-06
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-09
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		2e-06
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-09
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		3e-06
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-09
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		3e-06
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-09
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		3e-06
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-09
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		3e-06
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-09
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		4e-06
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-09
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		4e-06
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-09
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		4e-06
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-09
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		4e-06
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		2e-09
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		4e-06
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		2e-09
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		4e-06
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		2e-09
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		4e-06
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		2e-09
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		4e-06
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		7e-09
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		8e-07
2yns_A	490	Rimp_alpha_b54nls Length = 490		4e-08
4b8j_A	528	Rimp_alpha1a Length = 528		4e-08
3l6x_A	584	Crystal Structure Of P120 Catenin In Complex With E		4e-08
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-07
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		5e-06
1xm9_A	457	Structure Of The Armadillo Repeat Domain Of Plakoph		1e-07
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-07
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		6e-06
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-07
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		5e-06
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-07
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		6e-06
4ap2_A	297	Crystal Structure Of The Human Klhl11-cul3 Complex		8e-07
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		2e-06
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		6e-06
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		2e-06
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		6e-06
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		2e-06
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		7e-06
2if5_A	120	Structure Of The Poz Domain Of Human Lrf, A Master		3e-06
2nn2_A	133	Crystal Structure Of The Btb Domain From The LrfZBT		3e-06
3i3n_A	279	Crystal Structure Of The Btb-Back Domains Of Human		3e-06
3tt9_A	233	Crystal Structure Of The Stable Degradation Fragmen		1e-05
3ltm_A	211	Structure Of A New Family Of Artificial Alpha Helic		2e-05
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		2e-05
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		5e-04
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		3e-05
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		5e-04
3ltj_A	201	Structure Of A New Family Of Artificial Alpha Helic		3e-05
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		1e-04
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		1e-04
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		1e-04
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		1e-04
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		1e-04
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		2e-04
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		2e-04
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		2e-04
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		2e-04
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		2e-04
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		2e-04
1cs3_A	116	Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN		2e-04
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		2e-04
1buo_A	121	Btb Domain From Plzf Length = 121		2e-04
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		2e-04
3m8v_A	124	Crystal Structure Of The Btb Domain From KaisoZBTB3		2e-04
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		3e-04
3fkc_A	116	Crystal Structure Of Human Zinc Finger And Btb Doma		6e-04
3ga1_A	129	Crystal Structure Of The Human Nac1 Poz Domain Leng		7e-04
2z8h_A	138	Structure Of Mouse Bach1 Btb Domain Length = 138		8e-04

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 2/203 (0%)
Query: 28  SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 87
           S+IK  V   GG+  LV+LL  TD++VQ+ AA AL  +A   DE    IV+   +  L+ 
Sbjct: 35  SAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 93
Query: 88  MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 147
           +L S DS +  EA   + N+        K ++ AG ++ ++ LL+S  SE Q+EAA  L 
Sbjct: 94  LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153
Query: 148 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGG 206
             A+   +    IV  G V  L+++L S D ++++ +A AL  +A    +    I   GG
Sbjct: 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGG 213
Query: 207 LVPLLKLLDSKNGSLQHNAAFAL 229
           +  L KLL S +  +Q  A  AL
Sbjct: 214 VEVLQKLLTSTDSEVQKEAQRAL 236

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 124 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 183
           ++ ++ LL+S  SE+Q+EAA  L + A+  +     IV  G V  L+++L S D ++++ 
Sbjct: 4   VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 184 SAFALGRLAQ--DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VA 240
           +A AL  +A   D   +A I   GG+  L+KLL S +  +Q  AA AL  +A   D  + 
Sbjct: 64  AARALANIASGPDEAIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122
Query: 241 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 300
             +  GGV+                                  L+ L+   +  VQ+  A
Sbjct: 123 AIVDAGGVE---------------------------------VLVKLLTSTDSEVQKEAA 149
Query: 301 LALAHLCS-PDDQRTIFIDXXXXXXXXXXXXSTNPKQQLDGAVALFKLANKATT 353
            ALA++ S PD+     +D            ST+ + Q + A AL  +A+  T+
Sbjct: 150 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS 203

>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 366 PQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI 422
           P+  L D+      N+  +D    V G+ F AH+  L A S  F AMF+    E     +
Sbjct: 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV 216
Query: 423 EIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 482
           EI ++  EVF+ MM FIYTG       +A DLL AAD+Y LE LK +CE  +  ++S+EN
Sbjct: 217 EINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN 276
Query: 483 VSSMYELSEAFHAISLRHTCILYIMEH 509
            + +  L++   A  L+   + +I  H
Sbjct: 277 AAEILILADLHSADQLKTQAVDFINYH 303

>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 365 TPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD 421
            P+  L D+      N+  +D    V G+ F AH+  L A S  F AMF+    E     
Sbjct: 7   VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR 66
Query: 422 IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 481
           +EI ++  EVF+ MM FIYTG       +A DLL AAD+Y LE LK +CE  +  ++S+E
Sbjct: 67  VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE 126
Query: 482 NVSSMYELSEAFHAISLR 499
           N + +  L++   A  L+
Sbjct: 127 NAAEILILADLHSADQLK 144

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 1/196 (0%)
Query: 38  GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 97
           G +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I 
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 98  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
            EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++  
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173
Query: 158 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDS 216
             ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L +L   
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233
Query: 217 KNGSLQHNAAFALYGL 232
           +N  +Q  A  AL  L
Sbjct: 234 ENEKIQKEAQEALEKL 249

>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 366 PQVYLGDQ---FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI 422
           P+  L D+      N+  +D    V G+ F AH+  L A S  F A F+    E     +
Sbjct: 17  PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRV 76
Query: 423 EIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 482
           EI ++  EVF+    FIYTG        A DLL AAD+Y LE LK  CE  +  ++S+EN
Sbjct: 77  EINDVEPEVFKEXXCFIYTGKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVEN 136
Query: 483 VSSMYELSEAFHAISLRHTCILYIMEH 509
            + +  L++   A  L+   + +I  H
Sbjct: 137 AAEILILADLHSADQLKTQAVDFINYH 163

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
           +P +V+ L   D +  ++A   L  +A   +E    +++  ALP L+ +L S +  I  E
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
           A+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++    
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-N 218
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q       G  P L+ L S  N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPN 193
Query: 219 GSLQHNAAFAL 229
             +Q  A  AL
Sbjct: 194 EKIQKEAQEAL 204

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 1/194 (0%)
Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
           +P +V+ L   D +  ++A   L  +A   +E    +++  ALP L+ +L S +  I  E
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
           A+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++    
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKN 218
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L +L   +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 219 GSLQHNAAFALYGL 232
             +Q  A  AL  L
Sbjct: 194 EKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
           +P + + L   D + Q +A      +    +E    +++  ALP L+ +L S +  I  E
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
           A+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++    
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKN 218
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L +L   +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 219 GSLQHNAAFALYGL 232
             +Q  A  AL  L
Sbjct: 194 EKIQKEAQEALEKL 207

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 183 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 242
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 243 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 302
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 303 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 362
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 363 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 390

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 52  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 111
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 112 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 171
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 172 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 226
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 227 DSCWAISYLTDGPNERIEMVVKKGV 251

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 157 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 216
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 217 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 276
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 277 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 336
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 337 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 26  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 86  TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 285
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 286 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 345
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 346 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 406 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 433

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 95  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 215 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 269
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 270 DSCWAISYLTDGPNERIEMVVKKGV 294

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 152 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 211
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 212 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 271
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 272 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 331
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 332 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 359

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 21  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 80
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 81  TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 141 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 195
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 196 DSCWAISYLTDGPNERIEMVVKKGV 220

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 156 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 215
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 216 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 275
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 276 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 335
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 336 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 363

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 25  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 84
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 85  TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 145 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 199
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 200 DSCWAISYLTDGPNERIEMVVKKGV 224

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 152 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 211
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 212 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 271
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 272 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 331
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 332 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 359

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 21  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 80
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 81  TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 141 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 195
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 196 DSCWAISYLTDGPNERIEMVVKKGV 220

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 156 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 215
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 216 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 275
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 276 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 335
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 336 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 363

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 25  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 84
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 85  TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 145 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 199
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 200 DSCWAISYLTDGPNERIEMVVKKGV 224

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 193 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 252
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 253 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 312
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 313 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 372
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 373 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 400

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 62  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 121
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 122 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 181
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 182 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 236
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 237 DSCWAISYLTDGPNERIEMVVKKGV 261

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 157 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 216
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 217 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 276
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 277 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 336
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 337 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 26  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 86  TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 157 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 216
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 217 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 276
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 277 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 336
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 337 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 26  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 86  TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 191 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 250
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 251 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 310
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 311 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 370
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 371 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 398

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 60  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 119
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 120 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 179
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 180 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 234
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 235 DSCWAISYLTDGPNERIEMVVKKGV 259

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 266
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 387 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 110/275 (40%), Gaps = 27/275 (9%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 76  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 224 NAAFALYGLADNEDN----------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 273
           ++ +A+  L D  +           V   +++ G  +L      ++A  + V  T ++ +
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 274 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 308
           + I    L     L+   +  +Q+     ++++ +
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 163 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 222
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 223 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 282
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 283 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 342
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 343 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 370

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 32  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 91
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 92  TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 152 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 206
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 207 DSCWAISYLTDGPNERIEMVVKKGV 231

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 266
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 387 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 110/275 (40%), Gaps = 27/275 (9%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 76  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 224 NAAFALYGLADNEDN----------VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 273
           ++ +A+  L D  +           V   +++ G  +L      ++A  + V  T ++ +
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 274 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 308
           + I    L     L+   +  +Q+     ++++ +
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V   +  A+  L    +E 
Sbjct: 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 266
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ AGAL     LL+
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ +A+A+    
Sbjct: 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 387 SGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L   D S I +E+   + N+   +   
Sbjct: 76  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L 
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     +S  A G L       + +  N    P           L++LL   +  +  
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 224 NAAFALYGLADNEDNVADFIRVGGV 248
           ++ +A+  L D  +   + +   GV
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGV 275

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 10/212 (4%)
Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +R     ++NL    +       +E  +P LV LL   D +V      A+  L    +E 
Sbjct: 158 LRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNER 217
Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              +V+   +P L+ +L + +  I   A+  IGN+V  +    + V+ AGAL     LL+
Sbjct: 218 IGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLT 277
Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL---- 188
           +  +  Q+EA   +    A   D    +V  G V  L+ +L   D + ++ + +A+    
Sbjct: 278 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYT 337
Query: 189 --GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
             G + Q ++    + H G + PL+ LL +K+
Sbjct: 338 SGGTVEQIVY----LVHCGIIEPLMNLLTAKD 365

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 18/209 (8%)
Query: 56  RAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNI 114
           +A   A + L+ +     + I+    +P  +  L R++ S I +E+   + N+   +   
Sbjct: 27  QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQ 86
Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
            K V+  GA+   I LL+S  +    +A   LG  A   S  +  +++ GAV PL+ +L 
Sbjct: 87  TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLA 146
Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 223
            PD     MS+ A G L       + +  N    P           L++LL   +  +  
Sbjct: 147 VPD-----MSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLA 201
Query: 224 NAAFALYGLADN-EDNVADFIRVGGVQKL 251
           +  +A+  L D   + +   ++ G V +L
Sbjct: 202 DTCWAISYLTDGPNERIGMVVKTGVVPQL 230

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 23  LAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 81
           L+ E S     V   G +P  V+ L   D  ++Q  AA AL  +A    EN   +++  A
Sbjct: 64  LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 82  LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-R 140
           +P  + +L S    +  +AV  +GN+   SP  +  VLA GAL P++  L+     S  R
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 141 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 200
            A   L  F             R A+  L  ++ S D ++   + +AL  L+   +++  
Sbjct: 184 NATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQ 242
Query: 201 IAHNGGLVP-LLKLL 214
                G+ P L++LL
Sbjct: 243 AVIEAGVCPRLVELL 257

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 23  LAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 81
           L+ E S     V   G +P  V+ L   D  ++Q  AA AL  +A    EN   +++  A
Sbjct: 102 LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161
Query: 82  LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-R 140
           +P  + +L S    +  +AV  +GN+   SP  +  VLA GAL P++  L+     S  R
Sbjct: 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221
Query: 141 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 200
            A   L  F             R A+  L  ++ S D ++   + +AL  L+   +++  
Sbjct: 222 NATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQ 280
Query: 201 IAHNGGLVP-LLKLL 214
                G+ P L++LL
Sbjct: 281 AVIEAGVCPRLVELL 295

>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With E-Cadherin Length = 584

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 9   VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
           +++V   AA  + +L + N  +KT VR   GIP LV LL+    +V   A GAL+ ++F 
Sbjct: 61  LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120
Query: 69  NDE-NKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119
            D+ NK  I  C+ +P L+ +LR + D  +     G + NL  S  +IK E++
Sbjct: 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHDSIKMEIV 172

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           S+IR A   ++NL            +   +P L +L+   DT+    A  A+  L+    
Sbjct: 143 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 202
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    +++      L+ +L  E + +   A+  +GN+V  +    + V+ AG L  +  L
Sbjct: 203 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 262
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS     ++EA   +    A +++    ++    + PL+++L+  + + ++ + +A+  
Sbjct: 263 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
            +     +  I       G + PL  LL+  +  +      AL      G AD E     
Sbjct: 323 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 382
Query: 237 -DNVADFI-RVGGVQKL 251
            +  ADFI + GG++K+
Sbjct: 383 INENADFIEKAGGMEKI 399

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38  GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 43  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 97  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 162
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 163 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 221
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 222 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 279
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 280 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334

>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1 Length = 457

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 20  ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 79
           I +   ++ S K +V   GGI  LV+LL   +  VQ+AAAGALR L F++  NK +    
Sbjct: 26  IQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85
Query: 80  NALPTLILMLRSEDSA-IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
           N +   + +LR   +A I  +  G++ NL  SS +  KE L A AL PV+
Sbjct: 86  NGIREAVSLLRRTGNAEIQKQLTGLLWNL--SSTDELKEELIADAL-PVL 132

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           S+IR A   ++NL            +   +P L +L+   DT+    A  A+  L+    
Sbjct: 143 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 202
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    +++      L+ +L  E + +   A+  +GN+V  +    + V+ AG L  +  L
Sbjct: 203 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 262
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS     ++EA   +    A +++    ++    + PL+++L+  + + ++ + +A+  
Sbjct: 263 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
            +     +  I       G + PL  LL+  +  +      AL      G AD E     
Sbjct: 323 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 382
Query: 237 -DNVADFI-RVGGVQKL 251
            +  ADFI + GG++K+
Sbjct: 383 INENADFIEKAGGMEKI 399

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38  GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 43  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 97  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 162
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 163 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 221
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 222 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 279
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 280 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           S+IR A   ++NL            +   +P L +L+   DT+    A  A+  L+    
Sbjct: 144 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 203
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    +++      L+ +L  E + +   A+  +GN+V  +    + V+ AG L  +  L
Sbjct: 204 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 263
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS     ++EA   +    A +++    ++    + PL+++L+  + + ++ + +A+  
Sbjct: 264 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
            +     +  I       G + PL  LL+  +  +      AL      G AD E     
Sbjct: 324 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 383
Query: 237 -DNVADFI-RVGGVQKL 251
            +  ADFI + GG++K+
Sbjct: 384 INENADFIEKAGGMEKI 400

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38  GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 44  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 97  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 163
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 164 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 222
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 223 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 280
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 281 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           S+IR A   ++NL            +   +P L +L+   DT+    A  A+  L+    
Sbjct: 144 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 203
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    +++      L+ +L  E + +   A+  +GN+V  +    + V+ AG L  +  L
Sbjct: 204 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 263
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS     ++EA   +    A +++    ++    + PL+++L+  + + ++ + +A+  
Sbjct: 264 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
            +     +  I       G + PL  LL+  +  +      AL      G AD E     
Sbjct: 324 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 383
Query: 237 -DNVADFI-RVGGVQKL 251
            +  ADFI + GG++K+
Sbjct: 384 INENADFIEKAGGMEKI 400

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38  GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 44  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 97  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 163
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 164 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 222
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 223 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 280
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 281 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335

>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 389 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PNIRWEVFELMMRFIYTG 442
           GR F AHR  L A+++ F  +  G + E  +  +E+      P    +  E ++ ++YTG
Sbjct: 62  GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 443 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 493
            + V+     ++L  AD++LL  LK  C   + + + L N  +++ L+  +
Sbjct: 122 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMY 172

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           S+IR A   ++NL            +   +P L +L+   DT+    A  A+  L+    
Sbjct: 142 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 201
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    +++      L+ +L  E + +   A+  +GN+V  +    + V+ AG L  +  L
Sbjct: 202 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 261
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS     ++EA   +    A +++    ++    + PL+++L+  + + ++ + +A+  
Sbjct: 262 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
            +     +  I       G + PL  LL+  +  +      AL      G AD E     
Sbjct: 322 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 381
Query: 237 -DNVADFI-RVGGVQKL 251
            +  ADFI + GG++K+
Sbjct: 382 INENADFIEKAGGMEKI 398

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38  GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 42  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 97  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 161
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 162 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 220
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 221 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 278
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 279 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           S+IR A   ++NL            +   +P L +L+   DT+    A  A+  L+    
Sbjct: 142 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 201
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    +++      L+ +L  E + +   A+  +GN+V  +    + V+ AG L  +  L
Sbjct: 202 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 261
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS     ++EA   +    A +++    ++    + PL+++L+  + + ++ + +A+  
Sbjct: 262 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
            +     +  I       G + PL  LL+  +  +      AL      G AD E     
Sbjct: 322 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKMGEADKEARGLN 381
Query: 237 -DNVADFI-RVGGVQKL 251
            +  ADFI + GG++K+
Sbjct: 382 INENADFIEKAGGMEKI 398

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38  GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 42  GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 97  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 161
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 162 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 220
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 221 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 278
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 279 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           S+IR A   ++NL            +   +P L +L+   DT+    A  A+  L+    
Sbjct: 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 289
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    +++      L+ +L  E + +   A+  +GN+V  +    + V+ AG L  +  L
Sbjct: 290 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS     ++EA   +    A +++    ++    + PL+++L+  + + ++ + +A+  
Sbjct: 350 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409
Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE----- 236
            +     +  I       G + PL  LL+  +  +      AL      G AD E     
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 469
Query: 237 -DNVADFI-RVGGVQKL 251
            +  ADFI + GG++K+
Sbjct: 470 INENADFIEKAGGMEKI 486

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 38  GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 96
           G +P LVE + E     +Q  AA AL  +A         +V+ +A+P  I +L +    +
Sbjct: 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 189
Query: 97  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
             +A+  +GN+   S + +  VL   A++P++GL +S      R A   L          
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 249
Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 214
               V   A+  L +++ S D +    + +A+  L+ D   +A  A     +P  L++LL
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 308
Query: 215 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 267
             ++  +Q  A  A+  +    D     +   GV  L     ++ + K+ + K       
Sbjct: 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 366
Query: 268 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 317
                  ++++  I   ++  L+ L+ VAE   ++    A+++  S   QR   I
Sbjct: 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421

>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L DV  LVEGR F  HR  L A S  F+ +F  G         EI  +  E    +M F 
Sbjct: 25  LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84
Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
           YT ++ V+     D+L AA    +  +  +C
Sbjct: 85  YTATLTVSTANVGDILSAARLLEIPAVSHVC 115

>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L DV  LVEGR F  HR  L A S  F+ +F  G         EI  +  E    +M F 
Sbjct: 35  LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 94
Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
           YT ++ V+     D+L AA    +  +  +C
Sbjct: 95  YTATLTVSTANVGDILSAARLLEIPAVSHVC 125

>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 389 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PNIRWEVFELMMRFIYTG 442
           GR F AHR  L A+++ F  +  G + E  +  +E       P    +  E ++ + YTG
Sbjct: 44  GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTG 103
Query: 443 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 493
            + V+     ++L  AD++LL  LK  C   + + + L N  +++ L+  +
Sbjct: 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXY 154

>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant Length = 233

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           S I  AA  I +   + S  + RV    GI  L++LL+  +  VQRA  GALR L F+++
Sbjct: 25  SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84
Query: 71  ENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124
           +NK ++ E N +P L+ +L+ + D     +  G++ NL  SS +  K ++   AL
Sbjct: 85  DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL--SSNDKLKNLMITEAL 137

>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 211

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 54  VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 113
           V+RAAA AL            +I +  A+  LI  L+ ED+ +   A   +G +      
Sbjct: 35  VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 81
Query: 114 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 173
                    A++P+I  L       ++ AA+ LGQ           I    AV PLI+ L
Sbjct: 82  ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 121
Query: 174 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 229
           +  D  +R  +AFALG +  +            + PL+K L  ++G ++ +AA AL
Sbjct: 122 KDEDWFVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADAL 167

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 9/190 (4%)
Query: 15  RAADAITNLAHENSSIKTRVRMEGG-IPPLVELL--EFTDTKVQRAAAGALRTLAFKNDE 71
            +A  +TN+A  NS ++TR+ ++ G +P  +ELL  EF D  VQ  A  AL  +A  +  
Sbjct: 81  ESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTM 137
Query: 72  NKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
            ++ +++CN LP L+ +   ++   +   AV  + NL        +    +  L  +  L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           L    ++   +A   L   +   +D    ++  G  R L+E+L   D ++   +  A+G 
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 191 L--AQDMHNQ 198
           +    D+  Q
Sbjct: 258 IVTGDDIQTQ 267

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
Query: 43  LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLRSEDSAIH 97
           ++E++     + Q +A    R L  K  E    I E  + P ++      + R E+  + 
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSK--EPNPPIDEVISTPGVVARFVEFLKRKENCTLQ 79
Query: 98  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
           +E+  V+ N+   +    + V+ AGA+   I LLSS   + Q +A   LG  A   + C+
Sbjct: 80  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 139
Query: 158 VHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLD 215
            +++    + PL+++    + + +   + +AL  L +        A     + +L  LL 
Sbjct: 140 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 199
Query: 216 SKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL 251
             +  +  +A +AL  L+D   D +   I  G  ++L
Sbjct: 200 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 236

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 9/190 (4%)
Query: 15  RAADAITNLAHENSSIKTRVRMEGG-IPPLVELL--EFTDTKVQRAAAGALRTLAFKNDE 71
            +A  +TN+A  NS ++TR+ ++ G +P  +ELL  EF D  VQ  A  AL  +A  +  
Sbjct: 84  ESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTM 140
Query: 72  NKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
            ++ +++CN LP L+ +   ++   +   AV  + NL        +    +  L  +  L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           L    ++   +A   L   +   +D    ++  G  R L+E+L   D ++   +  A+G 
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 191 L--AQDMHNQ 198
           +    D+  Q
Sbjct: 261 IVTGDDIQTQ 270

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
Query: 43  LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-----LMLRSEDSAIH 97
           ++E++     + Q +A    R L  K  E    I E  + P ++      + R E+  + 
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSK--EPNPPIDEVISTPGVVARFVEFLKRKENCTLQ 82
Query: 98  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
           +E+  V+ N+   +    + V+ AGA+   I LLSS   + Q +A   LG  A   + C+
Sbjct: 83  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142
Query: 158 VHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLD 215
            +++    + PL+++    + + +   + +AL  L +        A     + +L  LL 
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202
Query: 216 SKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL 251
             +  +  +A +AL  L+D   D +   I  G  ++L
Sbjct: 203 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239

>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 201

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 43/176 (24%)
Query: 54  VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 113
           V+RAAA AL            +I +  A+  LI  L+ ED+ +   A   +G +      
Sbjct: 30  VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 76
Query: 114 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 173
                    A++P+I  L       ++ AA+ LGQ           I    AV PLI+ L
Sbjct: 77  ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 116
Query: 174 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 229
           +  D  +R  +AFALG           I     + PL+K L  ++G ++ +AA AL
Sbjct: 117 KDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWVRQSAADAL 162

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 30  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 88
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 89  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 34  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 92
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 93  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 152
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 153 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 212
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 213 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 257

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 31  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 89
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 90  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 150 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 209
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 210 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 254

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 37  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 95
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 96  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 155
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 156 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 215
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 216 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 260

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 35  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 93
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 94  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 154 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 213
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 214 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 258

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 35  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 93
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 94  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 154 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 213
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 214 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 258

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 36  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 94
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 95  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 154
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 155 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 214
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 215 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 259

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 31  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 89
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 90  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 150 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 209
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 210 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 254

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 20  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 78
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 79  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 138
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 139 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 198
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 199 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 243

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 33  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 91
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 92  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 18  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 76
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 77  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 137 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 196
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 197 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 241

>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM PROMELOCYTIC Leukemia Zinc Finger Oncoprotein Length = 116

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 361 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR 420
           P  PT  +   +Q     TL DV  +V+ + F+AHR  L  +S  F  +F      ++++
Sbjct: 8   PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 62
Query: 421 DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 458
              +  +  + F+ ++ + YT ++    +   DLL AA
Sbjct: 63  HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 100

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 18  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 76
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 77  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 137 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 196
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 197 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 241

>pdb|1BUO|A Chain A, Btb Domain From Plzf Length = 121

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 361 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR 420
           P  PT  +   +Q     TL DV  +V+ + F+AHR  L  +S  F  +F      ++++
Sbjct: 9   PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 63
Query: 421 DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 458
              +  +  + F+ ++ + YT ++    +   DLL AA
Sbjct: 64  HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 101

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  + 
Sbjct: 22  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 80
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 81  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 140
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 141 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 200
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 201 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 245

>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM II Length = 124

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 441
           DVT +VE R+F AH+  L ASS  F  +F         + +E+  IR E+F  ++ +IY+
Sbjct: 35  DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 89
Query: 442 GS-VDVTLDIAQDLLRAADQYLLEGLKRLCE 471
              V V  D+  +L+++     L G+K + E
Sbjct: 90  SKIVRVRSDLLDELIKSGQ---LLGVKFIAE 117

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 3/225 (1%)
Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 70
           V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  +G L  L+    
Sbjct: 166 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR- 224
Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ L
Sbjct: 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284
Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 189
           L+    +        L   A  + + K+ I+  G  + L+ ++++   + L   ++  L 
Sbjct: 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344
Query: 190 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
            L+    N+  I   GG+  L   L   +  L  N  + L  L+D
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 389

>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain Containing 33 Length = 116

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 441
           DVT +VE R+F AH+  L ASS  F  +F         + +E+  IR E+F  ++ +IY+
Sbjct: 33  DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 87
Query: 442 GS-VDVTLDIAQDLLRAA 458
              V V  D+  +L+++ 
Sbjct: 88  SKIVRVRSDLLDELIKSG 105

>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain Length = 129

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 382 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIY 440
           DV+ +V+G  F AHR  L ASS  FR +F+       +  +E+P  ++ + F+ ++ F Y
Sbjct: 35  DVSVVVKGHAFKAHRAVLAASSSYFRDLFN----NSRSAVVELPAAVQPQSFQQILSFCY 90
Query: 441 TGSVDVTLDIAQDLLRAADQYL 462
           TG + + +   QDLL     +L
Sbjct: 91  TGRLSMNVG-DQDLLMYTAGFL 111

>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain Length = 138

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR-DIEIP-NIRWEVFELMMR 437
           L DVT LVEG+RF AHR  L A S  F +   G   + DA   + +P  +  + FE +++
Sbjct: 36  LCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG---QTDAELTVTLPEEVTVKGFEPLIQ 92
Query: 438 FIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
           F YT  + ++ D   ++ R  +   +  ++  C
Sbjct: 93  FAYTAKLILSKDNVDEVCRCVEFLSVHNIEESC 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	548
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-72
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-53
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-47
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-38
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-69
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-50
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-48
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-46
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-40
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-69
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-51
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-44
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-42
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-20
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-63
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-49
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-41
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-59
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-40
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-31
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-30
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-28
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	4e-55
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-54
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-40
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-32
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-18
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	9e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-54
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-37
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-23
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-19
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-53
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-46
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-39
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-21
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-51
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-48
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-47
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-40
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	2e-49
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	3e-49
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-45
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-44
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	6e-43
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-32
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-38
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-25
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-23
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-21
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-06
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-05
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	1e-37
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-37
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-35
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-29
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-25
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-35
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-28
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-35
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-33
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-19
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-19
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-35
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-24
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-12
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	9e-32
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	5e-29
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	1e-25
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	2e-24
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	3e-24
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	2e-22
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	3e-22
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	4e-22
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	4e-22
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	4e-22
2vpk_A	116	Myoneurin; transcription regulation, transcription	9e-22
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	9e-22
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	1e-19
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	1e-19
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	2e-19
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	4e-18
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-14
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	8e-08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-14
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-13
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	6e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-13
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-13
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-10
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	8e-10
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	9e-08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	2e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-04
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	6e-04

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  238 bits (609), Expect = 5e-72
 Identities = 72/359 (20%), Positives = 132/359 (36%), Gaps = 26/359 (7%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFK 68
             V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  
Sbjct: 31  QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-H 89

Query: 69  NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
           + E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++
Sbjct: 90  HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 149

Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFA 187
            LL+    +        L   A  + + K+ I+  G  + L+ ++++    +L   ++  
Sbjct: 150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 209

Query: 188 LGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 247
           L  L+    N+  I   GG+  L   L   +  L  N  + L  L+D           G 
Sbjct: 210 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGL 267

Query: 248 VQKL----QDGEFIVQATKDCVAKTLKRL--------EEKIHGRVLNHLLYLMRVA--EK 293
           +  L       +  V     C A  L  L                +  L+  +  A   +
Sbjct: 268 LGTLVQLLGSDDINVVT---CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 324

Query: 294 GVQRRVALALAHLCSPDD----QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
            +      AL HL S        +       GL +++ LL   +    +   V L +  
Sbjct: 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  188 bits (480), Expect = 2e-53
 Identities = 62/345 (17%), Positives = 118/345 (34%), Gaps = 22/345 (6%)

Query: 19  AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE 78
           A+ NL +              IP L +LL   D  V   AA  +  L+ K       +  
Sbjct: 1   AVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 79  CNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE 137
              +  ++  M  + D        G + NL H        +  +G +  ++ +L S    
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDS 116

Query: 138 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA-QDMH 196
               A   L          K+ +   G ++ ++ +L   +V+   ++   L  LA  +  
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 197 NQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKL---- 251
           ++  I  +GG   L+ ++ +     L    +  L  L+    N    +  GG+Q L    
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 252 QDGEFIVQATKDCVAKTLKRLEEKIHGR-----VLNHLLYLMRVAEKGVQRRVALALAHL 306
            D    +         TL+ L +    +     +L  L+ L+   +  V    A  L++L
Sbjct: 237 TDPSQRLV---QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293

Query: 307 CSPDD-QRTIFIDGGGLELLLGLL--GSTNPKQQLDGAVALFKLA 348
              +   + +    GG+E L+  +               AL  L 
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  170 bits (433), Expect = 8e-47
 Identities = 55/270 (20%), Positives = 100/270 (37%), Gaps = 30/270 (11%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
            +++     + NL+   +    +  MEG +  LV+LL   D  V   AAG L  L   N 
Sbjct: 242 RLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298

Query: 71  ENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQ 125
           +NK  + +   +  L+  +    +   I   A+  + +L          +  V     L 
Sbjct: 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 358

Query: 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-------- 177
            V+ LL         +A + L +  A        + ++GA+  L+++L            
Sbjct: 359 VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 418

Query: 178 --------------VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
                          ++ E    AL  LA+D+HN+  I     +   ++LL S   ++Q 
Sbjct: 419 MGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 478

Query: 224 NAAFALYGLADNEDNVADFIRVGGVQKLQD 253
            AA  L  LA +++        G    L +
Sbjct: 479 VAAGVLCELAQDKEAAEAIEAEGATAPLTE 508

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  146 bits (369), Expect = 4e-38
 Identities = 54/249 (21%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT--KVQRAAAGALRTLAFK 68
           +V+  AA  ++NL   N   K  V   GGI  LV  +        +   A  ALR L  +
Sbjct: 281 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340

Query: 69  NDENKNQ---IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
           + E +     +     LP ++ +L         +A   +   +   P     +   GA+ 
Sbjct: 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 400

Query: 126 PVIGLLSSCCSESQREAALLLGQFA---------------------ATDSDCKVHIVQRG 164
            ++ LL     ++QR  ++   Q                       A D   ++ I    
Sbjct: 401 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 460

Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 224
            +   +++L SP   ++ ++A  L  LAQD      I   G   PL +LL S+N  +   
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520

Query: 225 AAFALYGLA 233
           AA  L+ ++
Sbjct: 521 AAAVLFRMS 529

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  233 bits (595), Expect = 5e-69
 Identities = 72/359 (20%), Positives = 132/359 (36%), Gaps = 26/359 (7%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFK 68
             V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  
Sbjct: 28  QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-H 86

Query: 69  NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
           + E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++
Sbjct: 87  HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 146

Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFA 187
            LL+    +        L   A  + + K+ I+  G  + L+ ++++    +L   ++  
Sbjct: 147 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 206

Query: 188 LGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 247
           L  L+    N+  I   GG+  L   L   +  L  N  + L  L+D           G 
Sbjct: 207 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGL 264

Query: 248 VQKL----QDGEFIVQATKDCVAKTLKRL--------EEKIHGRVLNHLLYLMRVA--EK 293
           +  L       +  V     C A  L  L                +  L+  +  A   +
Sbjct: 265 LGTLVQLLGSDDINVVT---CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 321

Query: 294 GVQRRVALALAHLCSPDD----QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
            +      AL HL S        +       GL +++ LL   +    +   V L +  
Sbjct: 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  181 bits (461), Expect = 4e-50
 Identities = 60/338 (17%), Positives = 116/338 (34%), Gaps = 19/338 (5%)

Query: 38  GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAI 96
             IP L +LL   D  V   AA  +  L+ K       +     +  ++  M  + D   
Sbjct: 14  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 73

Query: 97  HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 156
                G + NL H        +  +G +  ++ +L S        A   L          
Sbjct: 74  ARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 132

Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLD 215
           K+ +   G ++ ++ +L   +V+   ++   L  LA  +  ++  I  +GG   L+ ++ 
Sbjct: 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 216 SKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKL----QDGEFIVQATKDCVAKTLK 270
           +     L    +  L  L+    N    +  GG+Q L     D    +         TL+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV---QNCLWTLR 249

Query: 271 RLEEKIHGR-----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLEL 324
            L +    +     +L  L+ L+   +  V    A  L++L   +   + +    GG+E 
Sbjct: 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309

Query: 325 LLGLL--GSTNPKQQLDGAVALFKLANKATTLSSVDAA 360
           L+  +               AL  L ++         A
Sbjct: 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 347

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  177 bits (450), Expect = 2e-48
 Identities = 60/349 (17%), Positives = 115/349 (32%), Gaps = 21/349 (6%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
           +     ++   +  +  L+   SS K  +   GG+  L   L     ++ +     LR L
Sbjct: 193 TYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
           +   D    Q      L TL+ +L S+D  +   A G++ NL  ++   K  V   G ++
Sbjct: 252 S---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308

Query: 126 PVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVH---IVQRGAVRPLIEMLQSPDVQL 180
            ++  +       +    A   L    +   + ++    +     +  ++++L  P    
Sbjct: 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368

Query: 181 REMSAFALGR-LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 239
              +   L R LA    N A +   G +  L++LL   +   Q   +         E   
Sbjct: 369 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428

Query: 240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 299
            + I  G    L          +  +               +   + L+    + +QR  
Sbjct: 429 MEEIVEGCTGALHILA-RDVHNRIVIRG----------LNTIPLFVQLLYSPIENIQRVA 477

Query: 300 ALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
           A  L  L    +        G    L  LL S N       A  LF+++
Sbjct: 478 AGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  170 bits (432), Expect = 4e-46
 Identities = 66/366 (18%), Positives = 117/366 (31%), Gaps = 65/366 (17%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 69
             +++     + NL+        +  MEG +  LV+LL   D  V   AAG L  L   N
Sbjct: 238 QRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294

Query: 70  DENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGAL 124
            +NK  + +   +  L+  +    +   I   A+  + +L          +  V     L
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 354

Query: 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR--- 181
             V+ LL         +A + L +  A        + ++GA+  L+++L       +   
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414

Query: 182 -------------------EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 222
                              E    AL  LA+D+HN+  I     +   ++LL S   ++Q
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 474

Query: 223 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 282
             AA  L  LA +++        G    L +                             
Sbjct: 475 RVAAGVLCELAQDKEAAEAIEAEGATAPLTE----------------------------- 505

Query: 283 HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV 342
               L+    +GV    A  L  +    D+   +     +EL   L  +          +
Sbjct: 506 ----LLHSRNEGVATYAAAVLFRMSE--DKPQDYKKRLSVELTSSLFRTEPMAWNETADL 559

Query: 343 ALFKLA 348
            L   A
Sbjct: 560 GLDIGA 565

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  155 bits (392), Expect = 1e-40
 Identities = 52/293 (17%), Positives = 101/293 (34%), Gaps = 19/293 (6%)

Query: 70  DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 129
           +   +  +   A+P L  +L  ED  +  +A  ++  L     +    + +   +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 130 LLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
            + +    E+ R  A  L   +    +  + I + G +  L++ML SP   +   +   L
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 189 GRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVG 246
             L       +  +   GGL  ++ LL+  N          L  LA  N+++    +  G
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182

Query: 247 GVQKL----QDGEFIVQATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGV 295
           G Q L    +   +         ++ LK L          +    +  L   +    + +
Sbjct: 183 GPQALVNIMRTYTYEKL--LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 240

Query: 296 QRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
            +     L +L   D         G L  L+ LLGS +       A  L  L 
Sbjct: 241 VQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 68.8 bits (168), Expect = 2e-12
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 69
            ++ R AA  +  LA  +      +  EG   PL ELL   +  V   AA  L  ++   
Sbjct: 471 ENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529

Query: 70  DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 112
            ++  + +      +L    R+E  A +  A   +       P
Sbjct: 530 PQDYKKRLSVELTSSL---FRTEPMAWNETADLGLDIGAQGEP 569

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  235 bits (601), Expect = 6e-69
 Identities = 73/356 (20%), Positives = 135/356 (37%), Gaps = 22/356 (6%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKN 69
            V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  +G L  L+  +
Sbjct: 165 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS-HH 223

Query: 70  DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 129
            E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++ 
Sbjct: 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 283

Query: 130 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFAL 188
           LL+    +        L   A  + + K+ I+  G  + L+ ++++    +L   ++  L
Sbjct: 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343

Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG- 247
             L+    N+  I   GG+  L   L   +  L  N  + L  L+D          + G 
Sbjct: 344 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGT 403

Query: 248 -VQKLQDGEFIVQATKDCVAKTLKRL--------EEKIHGRVLNHLLYLMRVA--EKGVQ 296
            VQ L   +  V     C A  L  L                +  L+  +  A   + + 
Sbjct: 404 LVQLLGSDDINVVT---CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460

Query: 297 RRVALALAHLCS----PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
                AL HL S     +  +       GL +++ LL   +    +   V L +  
Sbjct: 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  187 bits (475), Expect = 2e-51
 Identities = 63/356 (17%), Positives = 117/356 (32%), Gaps = 35/356 (9%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
           +     ++   +  +  L+   SS K  +   GG+  L   L     ++ +     LR L
Sbjct: 329 TYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
           +   D    Q      L TL+ +L S+D  +   A G++ NL  ++   K  V   G ++
Sbjct: 388 S---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 444

Query: 126 PVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVH---IVQRGAVRPLIEMLQSPDVQL 180
            ++  +       +    A   L    +   D ++    +     +  ++++L  P    
Sbjct: 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP 504

Query: 181 REMSAFALGR-LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 239
              +   L R LA    N A +   G +  L++LL   +   Q   +         E   
Sbjct: 505 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG-- 562

Query: 240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR-------VLNHLLYLMRVAE 292
                             ++   +     L  L   IH R        +   + L+    
Sbjct: 563 ----------------VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606

Query: 293 KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
           + +QR  A  L  L    +        G    L  LL S N       A  LF+++
Sbjct: 607 ENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  167 bits (425), Expect = 1e-44
 Identities = 59/346 (17%), Positives = 113/346 (32%), Gaps = 20/346 (5%)

Query: 19  AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAA--AGALRTLAFK-NDENKNQ 75
           A+T      +++      EG   P  +      T VQR A  +  L+       +   + 
Sbjct: 86  AMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA 145

Query: 76  IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC 135
            +   A+P L  +L  ED  +  +A  ++  L     +    + +   +  ++  + +  
Sbjct: 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 205

Query: 136 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 195
                          +   +  + I + G +  L+ ML SP   +   +   L  L    
Sbjct: 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265

Query: 196 -HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL-- 251
              +  +   GGL  ++ LL+  N          L  LA  N+++    +  GG Q L  
Sbjct: 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 325

Query: 252 --QDGEFIVQATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALA 302
             +   +         ++ LK L          +    +  L   +    + + +     
Sbjct: 326 IMRTYTYEKL--LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383

Query: 303 LAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
           L +L   D         G L  L+ LLGS +       A  L  L 
Sbjct: 384 LRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  161 bits (409), Expect = 1e-42
 Identities = 66/361 (18%), Positives = 120/361 (33%), Gaps = 65/361 (18%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
            +++     + NL+   +    +  MEG +  LV+LL   D  V   AAG L  L   N 
Sbjct: 375 RLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431

Query: 71  ENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQ 125
           +NK  + +   +  L+  +    +   I   A+  + +L     +    +  V     L 
Sbjct: 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP 491

Query: 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR---- 181
            V+ LL         +A + L +  A        + ++GA+  L+++L       +    
Sbjct: 492 VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551

Query: 182 ------------------EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 223
                             E    AL  LA+D+HN+  I     +   ++LL S   ++Q 
Sbjct: 552 MGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQR 611

Query: 224 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 283
            AA  L  LA +++        G    L +                              
Sbjct: 612 VAAGVLCELAQDKEAAEAIEAEGATAPLTE------------------------------ 641

Query: 284 LLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVA 343
              L+    +GV    A  L  +   +D+   +     +EL   L  +        G + 
Sbjct: 642 ---LLHSRNEGVATYAAAVLFRMS--EDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLG 696

Query: 344 L 344
           L
Sbjct: 697 L 697

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 93.9 bits (233), Expect = 2e-20
 Identities = 45/207 (21%), Positives = 70/207 (33%), Gaps = 29/207 (14%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR------------- 56
           +  + +A   +        +    +R +G IP LV+LL       QR             
Sbjct: 502 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 561

Query: 57  ---------AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 107
                    A  GAL  LA ++  N+  I   N +P  + +L S    I   A GV+  L
Sbjct: 562 GVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620

Query: 108 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 167
                   + + A GA  P+  LL S        AA +L + +      K    ++    
Sbjct: 621 AQDKEA-AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED----KPQDYKKRLSV 675

Query: 168 PLIEMLQSPD-VQLREMSAFALGRLAQ 193
            L   L   + +   E     L   AQ
Sbjct: 676 ELTSSLFRTEPMTWNETGDLGLDIGAQ 702

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  205 bits (524), Expect = 7e-63
 Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 1/226 (0%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
                A    + +  + +     V   G +P LV+LL   + ++ + A  AL  +A   +
Sbjct: 27  QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86

Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    +++  ALP L+ +L S +  I  EA+  + N+        + V+ AGAL  ++ L
Sbjct: 87  EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146

Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS   +  +EA   L   A+  ++    ++  GA+  L+++L SP+ Q+ + + +AL  
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 206

Query: 191 LAQDMHNQAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 235
           +A   + Q   +   G L  L +L   +N  +Q  A  AL  L  +
Sbjct: 207 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  170 bits (432), Expect = 2e-49
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 2/216 (0%)

Query: 38  GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 97
             +P + + L   D + Q +A      +    +E    +++  ALP L+ +L S +  I 
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 98  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
            EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++  
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 158 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG-IAHNGGLVPLLKLLDS 216
             ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L++LL S
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191

Query: 217 KNGSLQHNAAFALYGLADNEDNVADFI-RVGGVQKL 251
            N  +   A +AL  +A   +     +   G ++KL
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 227

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  148 bits (375), Expect = 3e-41
 Identities = 47/187 (25%), Positives = 92/187 (49%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
           S     +++ A  A++N+A   +     V   G +P LV+LL   + ++ + A  AL  +
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 125
           A   +E    +++  ALP L+ +L S +  I  EA+  + N+        + V+ AGAL 
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183

Query: 126 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 185
            ++ LLSS   +  +EA   L   A+  ++ K  + + GA+  L ++    + ++++ + 
Sbjct: 184 ALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243

Query: 186 FALGRLA 192
            AL +L 
Sbjct: 244 EALEKLQ 250

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  195 bits (498), Expect = 2e-59
 Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 1/203 (0%)

Query: 34  VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 93
                 +P +V+ L   D +  ++A   L  +A   +E    +++  ALP L+ +L S +
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 94  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 153
             I  EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  
Sbjct: 68  EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127

Query: 154 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLK 212
           ++    ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G L  L +
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187

Query: 213 LLDSKNGSLQHNAAFALYGLADN 235
           L   +N  +Q  A  AL  L  +
Sbjct: 188 LQSHENEKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  143 bits (364), Expect = 4e-40
 Identities = 44/181 (24%), Positives = 88/181 (48%)

Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
            ++ A   ++ +A   +     V   G +P LV+LL   + ++ + A  AL  +A   +E
Sbjct: 28  ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87

Query: 72  NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
               +++  ALP L+ +L S +  I  EA+  + N+        + V+ AGAL  ++ LL
Sbjct: 88  QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 147

Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 191
           SS   +  +EA   L   A+  ++ K  + + GA+  L ++    + ++++ +  AL +L
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

Query: 192 A 192
            
Sbjct: 208 Q 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  119 bits (300), Expect = 4e-31
 Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 2/183 (1%)

Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
            + +     + LP ++  L S D      A+  +  +        + V+ AGAL  ++ L
Sbjct: 3   GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62

Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS   +  +EA   L   A+  ++    ++  GA+  L+++L SP+ Q+ + + +AL  
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 191 LAQDMHNQA-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGV 248
           +A   + Q   +   G L  L++LL S N  +   A +AL  +A    +        G +
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182

Query: 249 QKL 251
           +KL
Sbjct: 183 EKL 185

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  115 bits (291), Expect = 7e-30
 Identities = 38/141 (26%), Positives = 69/141 (48%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
            +++ A  A++N+A   +     V   G +P LV+LL   + ++ + A  AL  +A   +
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128

Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    +++  ALP L+ +L S +  I  EA+  + N+       K+ V  AGAL+ +  L
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188

Query: 131 LSSCCSESQREAALLLGQFAA 151
            S    + Q+EA   L +  +
Sbjct: 189 QSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  111 bits (280), Expect = 2e-28
 Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 36/237 (15%)

Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
                    L  ++  L+S   +  + A   L Q A+  ++    ++  GA+  L+++L 
Sbjct: 5   HHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 175 SPDVQLREMSAFALGRLAQDMHNQAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233
           SP+ Q+ + + +AL  +A   + Q   +   G L  L++LL S N  +   A +AL  +A
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 234 -DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE 292
               + +   I  G +                                   L+ L+    
Sbjct: 125 SGGNEQIQAVIDAGALP---------------------------------ALVQLLSSPN 151

Query: 293 KGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
           + + +    AL+++ S  ++Q+    + G LE L  L    N K Q +   AL KL 
Sbjct: 152 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score =  182 bits (464), Expect = 4e-55
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 3/171 (1%)

Query: 351 ATTLSSVDAAPPSPTPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFR 407
           +      +       P+  L D+      N+  +D    V G+ F AH+  L A S  F 
Sbjct: 2   SGGSGGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 61

Query: 408 AMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLK 467
           AMF+    E     +EI ++  EVF+ MM FIYTG       +A DLL AAD+Y LE LK
Sbjct: 62  AMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLK 121

Query: 468 RLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 518
            +CE  +  ++S+EN + +  L++   A  L+   + +I  H   +    G
Sbjct: 122 VMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  187 bits (476), Expect = 1e-54
 Identities = 50/250 (20%), Positives = 101/250 (40%), Gaps = 12/250 (4%)

Query: 1   MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV-RMEGGIPPLVELLEFTDTKVQRAAA 59
                     ++ R A  A+TNL   + + K  +  M+G +  LV  L+     +Q+  A
Sbjct: 89  YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148

Query: 60  GALRTLAFK-NDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNL-VHSSPNIKK 116
             LR L+++ +  +K  + E  ++  L+   L  +  +     +  + NL  H + N   
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208

Query: 117 EVLAAGALQPVIGLLSSCCSESQREAALL-------LGQFAATDSDCKVHIVQRGAVRPL 169
                GAL  ++G L+     +              +    AT+ D +  + +   ++ L
Sbjct: 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 268

Query: 170 IEMLQSPDVQLREMSAFALGRL-AQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 228
           ++ L+S  + +   +   L  L A++  +Q  +   G +  L  L+ SK+  +   +A A
Sbjct: 269 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 328

Query: 229 LYGLADNEDN 238
           L  L  N   
Sbjct: 329 LRNLMANRPA 338

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  148 bits (375), Expect = 3e-40
 Identities = 55/351 (15%), Positives = 116/351 (33%), Gaps = 59/351 (16%)

Query: 23  LAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL 82
            A+  +  + +   E G+      +          A   L  L+F ++E+++ + E   L
Sbjct: 17  RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGL 75

Query: 83  PTLILMLRSE-----------DSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGL 130
             +  +L+ +              +   A   + NL       K  + +  G ++ ++  
Sbjct: 76  QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 135

Query: 131 LSSCCSESQREAALLLGQFAA-TDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFAL 188
           L S   + Q+  A +L   +   D + K  + + G+V+ L+E   +       +    AL
Sbjct: 136 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 195

Query: 189 GRLAQDMH-NQAGIAHNGGLVP-LLKLLDSKNGS----LQHNAAFALYGL----ADNEDN 238
             L+     N+A I    G +  L+  L  ++ +    +  +    L  +    A NED+
Sbjct: 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255

Query: 239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRR 298
                    +Q                                  LL  ++     +   
Sbjct: 256 RQILRENNCLQ---------------------------------TLLQHLKSHSLTIVSN 282

Query: 299 VALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
               L +L + +   +    D G + +L  L+ S +    +  A AL  L 
Sbjct: 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  124 bits (314), Expect = 8e-32
 Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 13/212 (6%)

Query: 11  SVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFK 68
            + +  A  + NL+   + + K  +R  G +  L+E   E       ++   AL  L+  
Sbjct: 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201

Query: 69  NDENKNQIV-ECNALPTLILML----RSEDSAIHYEAVGVIGNLVH---SSPNIKKEVLA 120
             ENK  I     AL  L+  L    ++   AI     G++ N+     ++ + ++ +  
Sbjct: 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 261

Query: 121 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 180
              LQ ++  L S        A   L   +A +   +  +   GAV  L  ++ S    +
Sbjct: 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 321

Query: 181 REMSAFALGRLAQD---MHNQAGIAHNGGLVP 209
              SA AL  L  +    +  A I   G  +P
Sbjct: 322 AMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 84.5 bits (209), Expect = 6e-18
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 5/131 (3%)

Query: 1   MDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA 57
           +         ++I      + N++     N   +  +R    +  L++ L+     +   
Sbjct: 223 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282

Query: 58  AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK- 116
           A G L  L+ +N +++  + +  A+  L  ++ S+   I   +   + NL+ + P   K 
Sbjct: 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 342

Query: 117 -EVLAAGALQP 126
             +++ G+  P
Sbjct: 343 ANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 74.9 bits (184), Expect = 9e-15
 Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 50/230 (21%)

Query: 138 SQREAALL--LGQFAA-TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194
                 +L  L Q  A  ++  +        +      + +P       +   L +L+ D
Sbjct: 3   HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 62

Query: 195 MHNQAGIAHNGGLVPLLKLLDS-----------KNGSLQHNAAFALYGLA-DNEDNVADF 242
             ++  +   GGL  + +LL              + +L+  A  AL  L   +  N A  
Sbjct: 63  EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122

Query: 243 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 302
             + G                                 +  L+  ++   + +Q+ +A  
Sbjct: 123 CSMKG--------------------------------CMRALVAQLKSESEDLQQVIASV 150

Query: 303 LAHLCSPDDQ--RTIFIDGGGLELLLGLL-GSTNPKQQLDGAVALFKLAN 349
           L +L    D   +    + G ++ L+                 AL+ L+ 
Sbjct: 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  188 bits (478), Expect = 8e-54
 Identities = 50/240 (20%), Positives = 101/240 (42%), Gaps = 12/240 (5%)

Query: 11  SVIRRAADAITNLAHENSSIKTRV-RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK- 68
           ++ R A  A+TNL   + + K  +  M+G +  LV  L+     +Q+  A  LR L+++ 
Sbjct: 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 274

Query: 69  NDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNL-VHSSPNIKKEVLAAGALQP 126
           +  +K  + E  ++  L+   L  +  +     +  + NL  H + N        GAL  
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 127 VIGLLSSCCSESQREAALL-------LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 179
           ++G L+     +              +    AT+ D +  + +   ++ L++ L+S  + 
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 394

Query: 180 LREMSAFALGRL-AQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238
           +   +   L  L A++  +Q  +   G +  L  L+ SK+  +   +A AL  L  N   
Sbjct: 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  142 bits (358), Expect = 4e-37
 Identities = 66/409 (16%), Positives = 130/409 (31%), Gaps = 72/409 (17%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD------------TKVQRA 57
                  +  +  ++  +      +R  G +P L++LL   D             + +  
Sbjct: 43  THDKDDMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR 101

Query: 58  AAGALRTLAFKNDENK------------------------NQIVECNALPTLILMLRSED 93
           A+ AL  +     ++K                         Q      +      + +  
Sbjct: 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPV 161

Query: 94  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-----------QREA 142
                 AV V+  L     + +  +   G LQ +  LL   C              +R A
Sbjct: 162 EHQICPAVCVLMKLSFDEEH-RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYA 220

Query: 143 ALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQSPDVQLREMSAFALGRLA--QDMHNQA 199
            + L      D   K  +    G +R L+  L+S    L+++ A  L  L+   D++++ 
Sbjct: 221 GMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKK 280

Query: 200 GIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQK------- 250
            +   G +  L++   + K  S   +   AL+ L+    +N AD   V G          
Sbjct: 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340

Query: 251 ----------LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 300
                     ++ G  I++     +A      +       L  LL  ++     +     
Sbjct: 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400

Query: 301 LALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
             L +L + +   +    D G + +L  L+ S +    +  A AL  L 
Sbjct: 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  102 bits (256), Expect = 1e-23
 Identities = 57/388 (14%), Positives = 122/388 (31%), Gaps = 60/388 (15%)

Query: 14  RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 73
                  + L    S ++    +   +  +  LL    T  +   +  L  ++  + ++ 
Sbjct: 5   HHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMS-SSQDSC 63

Query: 74  NQIVECNALPTLILMLRSED------------SAIHYEAVGVIGNLVHSSPNIKKEVLAA 121
             + +   LP LI +L   D                  A   + N++HS P+ K+     
Sbjct: 64  ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREI 123

Query: 122 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 181
             L  +  + + C                  ++  +        +      + +P     
Sbjct: 124 RVLHLLEQIRAYC------------------ETCWEWQEAHEPGMDQDKNPMPAPVEHQI 165

Query: 182 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-----------DSKNGSLQHNAAFALY 230
             +   L +L+ D  ++  +   GGL  + +LL           D  + +L+  A  AL 
Sbjct: 166 CPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225

Query: 231 GLA-DNEDNVADFIRVGG-----VQKLQDGEFIVQ-----ATKDCVAKTLKRLEEKI-HG 278
            L   +  N A    + G     V +L+     +Q       ++   +     ++ +   
Sbjct: 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 285

Query: 279 RVLNHLLYLMRVAEK-GVQRRVALALAHLC--SPDDQRTIFIDGGGLELLLGLLGSTNPK 335
             +  L+      +K    + V  AL +L     +++  I    G L  L+G L   +  
Sbjct: 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 345

Query: 336 QQLDGAVALFKLANKATTLSSVDAAPPS 363
             L     +         +SS+ A    
Sbjct: 346 NTLA---IIESGGGILRNVSSLIATNED 370

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 88.5 bits (219), Expect = 7e-19
 Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 1   MDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA 57
           +         ++I      + N++     N   +  +R    +  L++ L+     +   
Sbjct: 339 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398

Query: 58  AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 117
           A G L  L+ +N +++  + +  A+  L  ++ S+   I   +   + NL+ + P   K+
Sbjct: 399 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 458

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  188 bits (478), Expect = 2e-53
 Identities = 62/294 (21%), Positives = 122/294 (41%), Gaps = 14/294 (4%)

Query: 1   MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 60
              + S      +R     ++NL    +       +E  +P LV LL   D +V   +  
Sbjct: 195 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 254

Query: 61  ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 120
           A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ 
Sbjct: 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 314

Query: 121 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 180
           AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+ +L   D + 
Sbjct: 315 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374

Query: 181 REMSAFALGRLAQ--DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238
           ++ +A+A+        +     + H G + PL+ LL +K+  +      A+  +    + 
Sbjct: 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434

Query: 239 VAD-------FIRVGGVQKLQ-----DGEFIVQATKDCVAKTLKRLEEKIHGRV 280
           + +           GG+ K++     + E + +A+ + + K     EE+    V
Sbjct: 435 LGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  167 bits (423), Expect = 9e-46
 Identities = 72/370 (19%), Positives = 138/370 (37%), Gaps = 20/370 (5%)

Query: 11  SVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFK 68
               +A  A   L   E       +   G IP  V  L  TD + +Q  +A AL  +A  
Sbjct: 72  ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 131

Query: 69  NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
             E    +V+  A+P  I +L S  + I  +AV  +GN+       +  V+  GA+ P++
Sbjct: 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 191

Query: 129 GLLSSCCSESQ-----REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 183
            LL+     +      R     L       +           +  L+ +L   D ++   
Sbjct: 192 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 251

Query: 184 SAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALYGLA-DNEDNVAD 241
           S +A+  L    + +  +    G+VP L+KLL +    +   A  A+  +    ++    
Sbjct: 252 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311

Query: 242 FIRVGGVQKL------QDGEFIVQATKD---CVAKTLKRLEEKIHGRVLNHLLYLMRVAE 292
            I  G +                +AT       A    ++++ ++  ++  L+ ++  A+
Sbjct: 312 VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 371

Query: 293 KGVQRRVALALAHLCS--PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350
              Q+  A A+ +  S    +Q    +  G +E L+ LL + + K       A+  +   
Sbjct: 372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431

Query: 351 ATTLSSVDAA 360
           A  L   +  
Sbjct: 432 AEKLGETEKL 441

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  149 bits (378), Expect = 2e-39
 Identities = 62/365 (16%), Positives = 144/365 (39%), Gaps = 19/365 (5%)

Query: 7   RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 66
                +         +          +  +   +  +V+ +   + + Q  A  A R L 
Sbjct: 26  FERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLL 85

Query: 67  FKNDE-NKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124
            +  +   + I+    +P  +  + +++ S I +E+   + N+   +    K V+  GA+
Sbjct: 86  SREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 145

Query: 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 184
              I LL+S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD+      
Sbjct: 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205

Query: 185 AFA-----LGRLAQDMHNQAGIAHNGGLVPLL-KLLDSKNGSLQHNAAFALYGLADN-ED 237
                   L  L ++ +    +     ++P L +LL   +  +  ++ +A+  L D   +
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265

Query: 238 NVADFIRVGGVQKL------QDGEFIVQATK---DCVAKTLKRLEEKIHGRVLNHLLYLM 288
            +   ++ G V +L       +   +  A +   + V  T ++ ++ I    L     L+
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325

Query: 289 RVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 347
              +  +Q+     ++++ +   DQ    ++ G +  L+G+L   + K Q + A A+   
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385

Query: 348 ANKAT 352
            +  T
Sbjct: 386 TSGGT 390

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 95.1 bits (236), Expect = 7e-21
 Identities = 44/279 (15%), Positives = 101/279 (36%), Gaps = 21/279 (7%)

Query: 90  RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 149
           + E   +    +G   +    +     +     +++ ++  ++S   ESQ +A     + 
Sbjct: 25  KFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84

Query: 150 AATD-SDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAG-IAHNGG 206
            + +      +I++ G +   +  L  +    ++  SA+AL  +A     Q   +   G 
Sbjct: 85  LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 144

Query: 207 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG-----VQKLQDGEFIVQAT 261
           +   + LL S +  +   A +AL  +A +     D +   G     +  L   +    A 
Sbjct: 145 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204

Query: 262 K-----------DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC-SP 309
                        C  K      + +   +L  L+ L+   +  V      A+++L   P
Sbjct: 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQ-ILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263

Query: 310 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
           +++  + +  G +  L+ LLG+T          A+  + 
Sbjct: 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 302

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  182 bits (462), Expect = 1e-51
 Identities = 51/257 (19%), Positives = 98/257 (38%), Gaps = 14/257 (5%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           ++ R A  A++NL    S      ++   +  L  LL  +DT V   A  AL  L+   +
Sbjct: 165 TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224

Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           +    +++      L+ +L   D  +   A+  +GN+V       + +L   ALQ ++ L
Sbjct: 225 DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL 284

Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS     ++EA   +    A +      ++       LI +LQ+ + + R+ +A+A+  
Sbjct: 285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344

Query: 191 LAQ--DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD------- 241
                       +   G + PL  LL   +  +   A   L  +    +  A        
Sbjct: 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGIN 404

Query: 242 -----FIRVGGVQKLQD 253
                     G+ K++ 
Sbjct: 405 PYCALIEEAYGLDKIEF 421

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  173 bits (440), Expect = 2e-48
 Identities = 62/349 (17%), Positives = 139/349 (39%), Gaps = 18/349 (5%)

Query: 22  NLAHENSSIKTRVRMEGG--IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ--IV 77
            +    + I       GG     ++E++     + Q +A    R L  K         I 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 78  ECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS 136
               +   +  + R E+  + +E+  V+ N+   +    + V+ AGA+   I LLSS   
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 137 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDM 195
           + Q +A   LG  A   + C+ +++    + PL+++    + + +   + +AL  L +  
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 196 HNQAGIAHNGGLVPLL-KLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKL-- 251
                 A     + +L  LL   +  +  +A +AL  L+D   D +   I  G  ++L  
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241

Query: 252 ----QDGEFIVQATK---DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALA 304
                D + +  A +   + V     + +  ++   L  LL+L+   ++ +++     ++
Sbjct: 242 LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301

Query: 305 HLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352
           ++ +    Q    ID      L+ +L +   + + + A A+    +  +
Sbjct: 302 NITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS 350

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  169 bits (430), Expect = 5e-47
 Identities = 65/371 (17%), Positives = 128/371 (34%), Gaps = 17/371 (4%)

Query: 11  SVIRRAADAITNLA--HENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAF 67
                A      L     N  I   +   G +   VE L+  +   +Q  +A  L  +A 
Sbjct: 35  EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94

Query: 68  KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 127
            N      +++  A+P  I +L SE   +  +AV  +GN+   S   +  VL    L P+
Sbjct: 95  GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL 154

Query: 128 IGLLSSCCSES-QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 186
           + L S     +  R A   L       S           +  L  +L   D  +   + +
Sbjct: 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214

Query: 187 ALGRLAQDMHNQAGIAHNGGLVPLL-KLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIR 244
           AL  L+   +++     + G+   L +LL   +  +   A  A+  +   ++      + 
Sbjct: 215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN 274

Query: 245 VGGVQKL------QDGEFIVQATKD---CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGV 295
              +Q L             +A        A    +++  I   +   L+ +++ AE   
Sbjct: 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRT 334

Query: 296 QRRVALALAHLCS--PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 353
           ++  A A+ +  S    +Q    ++ G ++ L  LL   + K        L  +      
Sbjct: 335 RKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394

Query: 354 LSSVDAAPPSP 364
            +  +    +P
Sbjct: 395 EAKRNGTGINP 405

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  150 bits (380), Expect = 3e-40
 Identities = 58/328 (17%), Positives = 122/328 (37%), Gaps = 25/328 (7%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKN 69
            V  +A  A+ N+A +++  +  V     +PPL++L  +     + R A  AL  L    
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 70  DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 129
                       L  L  +L   D+ +  +A   +  L     +  + V+ AG  + ++ 
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241

Query: 130 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 189
           LL     +    A   +G     D      I+   A++ L+ +L SP   +++ + + + 
Sbjct: 242 LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301

Query: 190 RLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALYGLA--DNEDNVADFIRVG 246
            +      Q     +  + P L+ +L +     +  AA+A+       + + +   + +G
Sbjct: 302 NITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELG 361

Query: 247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 306
            ++ L D               L  ++ KI    LN L  ++R+ E+  +R         
Sbjct: 362 CIKPLCD--------------LLTVMDSKIVQVALNGLENILRLGEQEAKRNGT------ 401

Query: 307 CSPDDQRTIFIDGGGLELLLGLLGSTNP 334
              +    +  +  GL+ +  L    N 
Sbjct: 402 -GINPYCALIEEAYGLDKIEFLQSHENQ 428

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score =  166 bits (423), Expect = 2e-49
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 359 AAPPSPTPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR 415
            +     P+  L D+      N+  +D    V G+ F AH+  L A S  F AMF+    
Sbjct: 1   GSNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME 60

Query: 416 EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIA 475
           E     +EI ++  EVF+ MM FIYTG       +A DLL AAD+Y LE LK +CE  + 
Sbjct: 61  ESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALC 120

Query: 476 QDISLENVSSMYELSEAFHAISLR 499
            ++S+EN + +  L++   A  L+
Sbjct: 121 SNLSVENAAEILILADLHSADQLK 144

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score =  171 bits (435), Expect = 3e-49
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 352 TTLSSVDAAPPSPTPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRA 408
             +S  +       P+  L D+      N+  +D    V G+ F AH+  L A S  F A
Sbjct: 143 VNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSA 202

Query: 409 MFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKR 468
           MF+    E     +EI ++  EVF+ MM FIYTG       +A DLL AAD+Y LE LK 
Sbjct: 203 MFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKV 262

Query: 469 LCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDK 512
           +CE  +  ++S+EN + +  L++   A  L+   + +I  H   
Sbjct: 263 MCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATD 306

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  167 bits (423), Expect = 1e-45
 Identities = 57/325 (17%), Positives = 118/325 (36%), Gaps = 18/325 (5%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
            V  +A  A+ N+A +++  +  V     + P++ L       + R A   L  L     
Sbjct: 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247

Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
              +  V   ALPTL  ++ S D+    +A   I  L        + V+     + ++ L
Sbjct: 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307

Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LS   +  Q  A   +G     +      ++  G +  L  +L SP   +++ + + +  
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367

Query: 191 L-AQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 249
           + A +      +     + PL+KLL+      +  A +A+   +       D IR     
Sbjct: 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR----- 422

Query: 250 KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 309
                  + Q     +   L+  + +I    L+ L  ++++ E   + R         + 
Sbjct: 423 -----YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL-------NI 470

Query: 310 DDQRTIFIDGGGLELLLGLLGSTNP 334
           ++        GG+E +     + N 
Sbjct: 471 NENADFIEKAGGMEKIFNCQQNEND 495

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  163 bits (413), Expect = 4e-44
 Identities = 63/360 (17%), Positives = 145/360 (40%), Gaps = 14/360 (3%)

Query: 7   RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR-TL 65
           R        A     + +  ++  +   +++  +P + + L   D + Q +A    R  L
Sbjct: 56  RNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL 115

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSA-IHYEAVGVIGNLVHSSPNIKKEVLAAGAL 124
           + ++    + +++   +P L+  +R      +  EA   + N+   +    K V+ A A+
Sbjct: 116 SREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 175

Query: 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 184
              I LL +   E + +A   LG  A   +D + +++Q  A+ P++ +  S    L   +
Sbjct: 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA 235

Query: 185 AFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADF 242
            + L  L +    Q   +     +P L KL+ S +     +A +A+  L+D  ++ +   
Sbjct: 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV 295

Query: 243 IRVGGVQKL------QDGEFIVQATK---DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEK 293
           I V   ++L      +       A +   + V     + +  I+  VL  L  L+   ++
Sbjct: 296 IDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355

Query: 294 GVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352
            +++     ++++ +   +Q    ID   +  L+ LL     K + +   A+   ++   
Sbjct: 356 NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL 415

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  159 bits (404), Expect = 6e-43
 Identities = 67/374 (17%), Positives = 134/374 (35%), Gaps = 17/374 (4%)

Query: 11  SVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFK 68
                A      +   E+      V   G +P LVE + E     +Q  AA AL  +A  
Sbjct: 102 QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG 161

Query: 69  NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
                  +V+ +A+P  I +L +    +  +A+  +GN+   S + +  VL   A++P++
Sbjct: 162 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL 221

Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
           GL +S      R A   L              V   A+  L +++ S D +    + +A+
Sbjct: 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI 281

Query: 189 GRLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 247
             L+           +  +   L++LL  ++  +Q  A  A+  +    D     +   G
Sbjct: 282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG 341

Query: 248 V-----QKLQDGEFIVQ-----ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQR 297
           V       L   +  ++        +  A   ++++  I   ++  L+ L+ VAE   ++
Sbjct: 342 VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401

Query: 298 RVALALAHLCS----PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 353
               A+++  S      D     +  G ++ L  LL   + +       AL  +      
Sbjct: 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461

Query: 354 LSSVDAAPPSPTPQ 367
                    +    
Sbjct: 462 DKEARGLNINENAD 475

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  130 bits (327), Expect = 1e-32
 Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 15/245 (6%)

Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
            +  A  AI+ L+         V        LVELL    T VQ  A  A+  +   ND 
Sbjct: 273 TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL 332

Query: 72  NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
               ++    LP L L+L S    I  EA   I N+   +    + V+ A  + P++ LL
Sbjct: 333 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL 392

Query: 132 SSCCSESQREAALLLGQFAAT---DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
                ++++EA   +   ++      D   ++V +G ++PL ++L+  D ++ E++  AL
Sbjct: 393 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 452

Query: 189 GRLAQDMHNQAG------------IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 236
             + +                   I   GG+  +     ++N  +   A   +      E
Sbjct: 453 ENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512

Query: 237 DNVAD 241
           ++  D
Sbjct: 513 EDAVD 517

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  146 bits (368), Expect = 2e-38
 Identities = 70/362 (19%), Positives = 119/362 (32%), Gaps = 43/362 (11%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
                 A  I +   ++ S K +V   GGI  LV+LL   +  VQ+AAAGALR L F++ 
Sbjct: 17  KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76

Query: 71  ENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 129
            NK +    N +   + L+ R+ ++ I  +  G++ NL  +     KE L A AL  +  
Sbjct: 77  TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL--KEELIADALPVLAD 134

Query: 130 LLSSCCS----------------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 173
            +    S                E    A   L   ++ D+  +      G +  L+  +
Sbjct: 135 RVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV 194

Query: 174 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233
           Q+     R         +    +    +             +++N   + ++       +
Sbjct: 195 QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKS 254

Query: 234 DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE- 292
           D   N                               K      H   +   L LM  ++ 
Sbjct: 255 DKMMNNN-----------------YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297

Query: 293 KGVQRRVALALAHLC------SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 346
                  A AL +L       S    + I +   GL  +  LL S N      GA  L  
Sbjct: 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357

Query: 347 LA 348
           ++
Sbjct: 358 MS 359

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  108 bits (270), Expect = 2e-25
 Identities = 57/373 (15%), Positives = 119/373 (31%), Gaps = 64/373 (17%)

Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKND 70
           V + AA A+ NL   +++ K   R + GI   V LL    + ++Q+   G L  L+   D
Sbjct: 60  VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-TD 118

Query: 71  ENKNQIVECNALPTLILML----------------RSEDSAIHYEAVGVIGNLVHSSPNI 114
           E K +++  +ALP L   +                   D  + + A G + NL  +    
Sbjct: 119 ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR 177

Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEML 173
           +     +G +  ++  + +C + S+ +   +        +   ++        R L    
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237

Query: 174 QSPDVQLREMSAF--------------ALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKN 218
           ++   +      F               L     +      + H+  +   L L+  SK 
Sbjct: 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297

Query: 219 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 278
            +     A AL  L  ++  ++  +      K                            
Sbjct: 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKE--------------------------- 330

Query: 279 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL 338
           + L  +  L++     V R  A  L+++        +  +    E+   L   T      
Sbjct: 331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNS 390

Query: 339 DGAV--ALFKLAN 349
           +  +  A + + N
Sbjct: 391 EDILSSACYTVRN 403

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  101 bits (253), Expect = 3e-23
 Identities = 38/304 (12%), Positives = 83/304 (27%), Gaps = 43/304 (14%)

Query: 82  LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 141
           +P  +  L S+D          I +      + K++V   G +  ++ LL S     Q+ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 142 AALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMHNQAG 200
           AA  L       +  K+   ++  +R  + +L ++ + ++++     L  L+     +  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 201 IAHNGGLVPLLKLL----------------DSKNGSLQHNAAFALYGLADNEDNVADFIR 244
           +     L  L   +                +  +  +  NA   L  L+  +        
Sbjct: 124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 245 VGGVQKL--------QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE---- 292
             G+                    + +     L  L  ++   V      L   A     
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 293 -------------KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLD 339
                        K +       L    +             +   L L+G +     L+
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 340 GAVA 343
               
Sbjct: 303 ACAG 306

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 94.1 bits (233), Expect = 9e-21
 Identities = 29/269 (10%), Positives = 81/269 (30%), Gaps = 30/269 (11%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
            V   A   + NL+  ++  +T     G I  L+  ++      +     ++        
Sbjct: 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK-SVENCMCVLH 216

Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH---------------SSPNIK 115
               ++          L   + ++     + G   N                  ++P   
Sbjct: 217 NLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276

Query: 116 KEVLAAGALQPVIGLLSSCCSESQREAA------LLLGQFAATDSDCKVHIVQRGAVRPL 169
             +  + A++  + L+     ++  EA       L   +   +    ++  ++   +  +
Sbjct: 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQI 336

Query: 170 IEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS------LQH 223
             +LQS +  +    A  L  +++       +  N     + +LL S  G+      +  
Sbjct: 337 ARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILS 395

Query: 224 NAAFALYGLA-DNEDNVADFIRVGGVQKL 251
           +A + +  L          +     +  +
Sbjct: 396 SACYTVRNLMASQPQLAKQYFSSSMLNNI 424

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 85.3 bits (210), Expect = 8e-18
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 13/148 (8%)

Query: 10  NSVIRRAADAITNLAHEN-----SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 64
           ++ +   A A+ NL            +     E G+P +  LL+  ++ V R+ A  L  
Sbjct: 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357

Query: 65  LAFKNDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLVHSSPNIKKEV 118
           ++ ++      +      P +  +L S          I   A   + NL+ S P + K+ 
Sbjct: 358 MS-RHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQY 415

Query: 119 LAAGALQPVIGLLSSCCSESQREAALLL 146
            ++  L  +I L  S  S    EAA LL
Sbjct: 416 FSSSMLNNIINLCRSSASPKAAEAARLL 443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 69.5 bits (169), Expect = 8e-13
 Identities = 27/193 (13%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 15  RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR-AAAGALRTLAFKNDENK 73
              D        N      +     I   + L+  +       A AGAL+ L        
Sbjct: 260 NNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319

Query: 74  NQ-----IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
           +       ++   LP +  +L+S +S +      ++ N+          V+       V 
Sbjct: 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVT 377

Query: 129 GLLSSCCS------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLR 181
            LL+S         +    A   +    A+             +  +I + +S    +  
Sbjct: 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437

Query: 182 EMSAFALGRLAQD 194
           E +   L  +   
Sbjct: 438 EAARLLLSDMWSS 450

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 32/256 (12%), Positives = 70/256 (27%), Gaps = 31/256 (12%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-- 68
           +  R    ++ N      ++  R+  E             +   ++++ G     + K  
Sbjct: 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMM 258

Query: 69  -------------NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI------GNLVH 109
                        N +    +   +A+ T + ++         EA             + 
Sbjct: 259 NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318

Query: 110 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 169
           SS   +   L    L  +  LL S  S+  R  A LL   +         +        +
Sbjct: 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS-RHPLLHRVMG-NQVFPEV 376

Query: 170 IEMLQS------PDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 222
             +L S          +   + + +  L             +  L  ++ L  S      
Sbjct: 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436

Query: 223 HNAAF-ALYGLADNED 237
             AA   L  +  +++
Sbjct: 437 AEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 2   DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAG 60
            +  +     ++  A   + NL      +  +      +  ++ L   + + K   AA  
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442

Query: 61  ALRTLA 66
            L  + 
Sbjct: 443 LLSDMW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 278 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQ 336
           G  +   +  +   ++  Q   A  + H C  D+  +      GG+  L+ LL S N   
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 337 QLDGAVALFKLA 348
           Q   A AL  L 
Sbjct: 61  QQAAAGALRNLV 72

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score =  133 bits (337), Expect = 1e-37
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 376 NNATLSDVTFLV----EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEV 431
           NN  ++DV F+V      R   AH+  L   S  F AMF G   E  +  I IP++    
Sbjct: 4   NNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSE-IHIPDVEPAA 62

Query: 432 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
           F ++++++Y+  +D+  D     L AA +Y++  L + C 
Sbjct: 63  FLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACV 102

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  146 bits (370), Expect = 2e-37
 Identities = 69/394 (17%), Positives = 130/394 (32%), Gaps = 56/394 (14%)

Query: 10  NSVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVELL------EFTDTKVQRAAAGAL 62
           + +  RA   +  L  +       R   +G    L E           D  ++R AA  L
Sbjct: 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGL 403

Query: 63  RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE----- 117
             L    +  +  I +  ++  L+ + R  + +  Y  V    NL ++    +       
Sbjct: 404 AYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463

Query: 118 ---------------------------VLAAGALQPVIGLLSSCCSESQREAALLLGQFA 150
                                      +   G    +  L  +    SQ   A +L    
Sbjct: 464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC 523

Query: 151 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ---AGIAHNGGL 207
               + +  +VQ G V+ L+ M      + +  +  AL R+   ++ +   +G      +
Sbjct: 524 -GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582

Query: 208 VPLLKLLDSKNGSLQ-HNAAFALYGLA-DNEDNVADFIRVGGVQKLQD-----GEFIVQA 260
            PLL LL     +L+   +  AL  LA  NE      I+  GV K++        ++ +A
Sbjct: 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRA 642

Query: 261 TKDCVAKTLKRLEEKIH----GRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ--RT 314
              C+   +   +           +  L  L    ++      A ALA + S   +    
Sbjct: 643 AAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEK 702

Query: 315 IFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
           I      L++L  L+ + +P  Q  G V +  + 
Sbjct: 703 ILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  138 bits (349), Expect = 7e-35
 Identities = 40/275 (14%), Positives = 103/275 (37%), Gaps = 11/275 (4%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 69
           ++     A  +  +      ++ +V  EGG+  L+ +      K +R A  AL  +    
Sbjct: 509 HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITI 567

Query: 70  D--ENKNQIVECNALPTLILMLRSEDSAI-HYEAVGVIGNLVHSSPNIKKEVLAAGALQP 126
           +   + +     + +  L+ +L+ + +A+ ++E++  + NL   + ++++ ++    +  
Sbjct: 568 NPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK 627

Query: 127 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 186
           +   L        R AA  L     ++   K+       V+ L  + +  D +     A 
Sbjct: 628 IEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAG 687

Query: 187 ALGRLAQ--DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD-FI 243
           AL  +        +  +A    L  L  L+ + + ++QH     +  + +  + +A    
Sbjct: 688 ALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLF 747

Query: 244 RVGGVQKL----QDGEFIVQATKDCVAKTLKRLEE 274
               ++ L    Q  +      ++   + L   E 
Sbjct: 748 ETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  120 bits (301), Expect = 9e-29
 Identities = 39/197 (19%), Positives = 72/197 (36%), Gaps = 1/197 (0%)

Query: 16  AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 75
           +  A+TNLA  N S++ R+  E G+  +   L      + RAAA  L  L    D  K  
Sbjct: 601 SLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMF 660

Query: 76  IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSC 134
               + +  L L+   ED        G +  +   S    +++LA A  L  +  L+++ 
Sbjct: 661 EGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP 720

Query: 135 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 194
               Q    +++        +    + +   +  L  + Q PD    +    A   LA  
Sbjct: 721 SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780

Query: 195 MHNQAGIAHNGGLVPLL 211
              +     +   +P +
Sbjct: 781 ERYRIIERSDNAEIPDV 797

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  108 bits (271), Expect = 5e-25
 Identities = 55/357 (15%), Positives = 109/357 (30%), Gaps = 12/357 (3%)

Query: 2   DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAG 60
             +      S    A+  +  +       + + R    I   + + L   D + +     
Sbjct: 210 YESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTV 269

Query: 61  ALRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119
           A+  L     +  NQ+V     L  ++ M  ++D      A   +            + L
Sbjct: 270 AITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK--AKAL 327

Query: 120 AAGALQPVIGLLSSCCSESQREAALLLGQFAA-TDSDCKVHIVQRGAVRPLIEMLQ---- 174
               +  +  L  S     +  A + L +  +    D  +     GA   L E  +    
Sbjct: 328 CEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLI 387

Query: 175 --SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALYG 231
               D  +R  +A  L  L  D   +  +  +   +  L+ L    N S  +        
Sbjct: 388 KPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVN 447

Query: 232 LADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA 291
           L +  +       +  + K        +   D V    KR+    +  +   L  L +  
Sbjct: 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE 507

Query: 292 EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
               Q  +A  L  +C   + R   +  GG++ LL +      K +     AL ++ 
Sbjct: 508 SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 52/357 (14%), Positives = 109/357 (30%), Gaps = 28/357 (7%)

Query: 14  RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDEN 72
           R AA+ +  LA E +     +  +  I  +  L +   D  +       +  L   + E 
Sbjct: 26  RAAANNLVVLAKEQTG-AELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84

Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
              ++    +P  + +L  +       A   +  ++++        L+    +P      
Sbjct: 85  TKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNA--------LSGLKNKPDSKPDK 136

Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 192
             C+ + RE   LL     + +D  +    R  V  LI                 +  L 
Sbjct: 137 ELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLC 196

Query: 193 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN------EDNVADFIRVG 246
           + +   + +        +     S        A+  L  + +N      +    D I   
Sbjct: 197 RLLDVCSELEDYKYESAMDITGSSST-----IASVCLARIYENMYYDEAKARFTDQIDEY 251

Query: 247 GVQKLQDGEFIVQATKDCVAKTL------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 300
              KL   +   +         L         +      +L  +L +    ++  QR   
Sbjct: 252 IKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVAC 311

Query: 301 LALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSV 357
             L    S  D+    +   G+++L  L  S N   ++   V L KL +     +++
Sbjct: 312 ECLIAASSKKDKAK-ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAI 367

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  133 bits (336), Expect = 2e-35
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 4/219 (1%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKN 69
                A + + +L  EN           G+  LV   LE     ++  AA  + T +   
Sbjct: 55  QEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV 113

Query: 70  DENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
              + Q++   AL  L+ +L  +    +  +A+  I  LV        + L       ++
Sbjct: 114 AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM 173

Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
             +     + + ++A LL        + K  +   G V+ L+ ++++      E    AL
Sbjct: 174 RAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGAL 233

Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 227
             L  D            L  L +LL  +   LQ +  +
Sbjct: 234 CSLVTDFPQGVRECREPEL-GLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  113 bits (283), Expect = 4e-28
 Identities = 42/242 (17%), Positives = 93/242 (38%), Gaps = 8/242 (3%)

Query: 17  ADAITNLAHENSSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAF--KNDENK 73
              +     E   +K+ +R +   +PP     E    + +R  A  L  LA   +N +N 
Sbjct: 17  GSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGA--LELLADLCENMDNA 74

Query: 74  NQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
               + + +  L+   L +  + + + A  +IG    +   I+++VL  GAL+ ++ LL 
Sbjct: 75  ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134

Query: 133 SCCSES-QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 191
               ++ + +A   +           +  ++      L+  +Q    +L+  SAF L  L
Sbjct: 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 194

Query: 192 A-QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 250
                 ++  +   G +  L+ L+ +++     +   AL  L  +        R   +  
Sbjct: 195 LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL 254

Query: 251 LQ 252
            +
Sbjct: 255 EE 256

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 83.1 bits (205), Expect = 7e-18
 Identities = 43/231 (18%), Positives = 80/231 (34%), Gaps = 38/231 (16%)

Query: 124 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI-EMLQSPDVQLRE 182
           + P  G       + +RE AL L      + D      Q   +  L+   L++    LR 
Sbjct: 41  MPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRW 100

Query: 183 MSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLA-DNEDNV 239
            +A  +G  +Q++   Q  +   G L  LL+LLD     +++  A FA+  L  + E  +
Sbjct: 101 RAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL 160

Query: 240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV 299
             F+R+ G   L                                    M+   + ++ + 
Sbjct: 161 LQFLRLDGFSVLMR---------------------------------AMQQQVQKLKVKS 187

Query: 300 ALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349
           A  L +L     + +      G ++ L+ L+ + +         AL  L  
Sbjct: 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 35/192 (18%)

Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL-KLLDSKN 218
           ++ +       E  Q+ D Q RE +   L  L ++M N A      G+  L+ + L++  
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 219 GSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 277
             L+  AA  +   + +        + +G ++KL                          
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL-------------------------- 129

Query: 278 GRVLNHLLYLMRVAEKGVQRRVALALAHLC-SPDDQRTIFIDGGGLELLLGLLGSTNPKQ 336
                 L  L R A   V+ +   A++ L    +     F+   G  +L+  +     K 
Sbjct: 130 ------LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183

Query: 337 QLDGAVALFKLA 348
           ++  A  L  L 
Sbjct: 184 KVKSAFLLQNLL 195

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  138 bits (347), Expect = 5e-35
 Identities = 55/370 (14%), Positives = 126/370 (34%), Gaps = 30/370 (8%)

Query: 6   SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
             A  +   R + A  +   +        R +  +P ++ +L F    V+  AA  L+ L
Sbjct: 17  YWAPLAQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHL 75

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL-VHSSPNIKKEVLAAGAL 124
            ++ND+ K  + +   +P L+ +L      +H  A G + N+      + K  +     +
Sbjct: 76  CYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGV 135

Query: 125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-------- 176
             ++ LL         E         ++    K+ IV   A+  L + +  P        
Sbjct: 136 PALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-DHALHALTDEVIIPHSGWEREP 194

Query: 177 ----------DVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHN 224
                        +   +A  L  ++ +     +     +G +  L+ ++ ++ G    +
Sbjct: 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSD 254

Query: 225 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 284
           +      +     N++  +     Q  +  E       +      +  E      V+   
Sbjct: 255 SKLVENCVCLLR-NLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIY 313

Query: 285 LYLMRVAE-KGVQRRVALALAHLCS-----PDDQRTIFIDGGGLELLLGLLGSTNPKQQL 338
           + L++ ++   +    A A+ +LC+         R+       L  +  LL + + +   
Sbjct: 314 ISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVK 373

Query: 339 DGAVALFKLA 348
             + AL  LA
Sbjct: 374 AASGALRNLA 383

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  133 bits (334), Expect = 3e-33
 Identities = 74/407 (18%), Positives = 134/407 (32%), Gaps = 87/407 (21%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF-K 68
           ++V   AA  + +L + N  +KT VR   GIP LV LL+    +V   A GAL+ ++F +
Sbjct: 62  DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121

Query: 69  NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 127
           + +NK  I  C+ +P L+ +LR + D  +     G + NL  SS +  K  +   AL  +
Sbjct: 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL--SSHDSIKMEIVDHALHAL 179

Query: 128 IGLLSSCCSESQREAALLLGQFAATDSD-------------------CKVHIVQRGAVRP 168
              +    S  +RE                                  +      G V  
Sbjct: 180 TDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDA 239

Query: 169 LIEMLQS------PDVQLREMSAFALGRLAQ--------------------------DMH 196
           LI ++Q+       D +L E     L  L+                              
Sbjct: 240 LIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPAR 299

Query: 197 NQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE 255
               +     +   + LL +SK  ++   +A A+  L         +IR    Q+     
Sbjct: 300 GYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQE----- 354

Query: 256 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTI 315
                                  + L+ +  L+    + V +  + AL +L      + +
Sbjct: 355 -----------------------KALSAIADLLTNEHERVVKAASGALRNLAVDARNKEL 391

Query: 316 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSSVDAAPP 362
            I    +  L+  L         + +     + +   T++ V A   
Sbjct: 392 -IGKHAIPNLVKNLPGGQQNSSWNFSEDT--VISILNTINEVIAENL 435

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 89.2 bits (220), Expect = 5e-19
 Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 17/229 (7%)

Query: 10  NSVIRRAADAITNLAHEN----SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 65
            +++  +A AI NL          I++ +R E  +  + +LL     +V +AA+GALR L
Sbjct: 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNL 382

Query: 66  AFKNDENKNQIVECNALPTLILMLRSEDSAIHYE--------AVGVIGNLVHSSPNIKKE 117
           A  +  NK  I   +A+P L+  L        +          +  I  ++  +    K+
Sbjct: 383 A-VDARNKELIG-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKK 440

Query: 118 VLAAGALQPVIGLLSSCCSES--QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 175
           +     ++ ++ +  S        R AAL+L        + +  + + G  +   ++  +
Sbjct: 441 LRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG-YKELRKPLEKEGWKKSDFQVNLN 499

Query: 176 PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 224
              + +   ++    L     NQ            +  + S   SL +N
Sbjct: 500 NASRSQSSHSYDDSTLPLIDRNQKSDKKPDREEIQMSNMGSNTKSLDNN 548

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 89.2 bits (220), Expect = 5e-19
 Identities = 50/305 (16%), Positives = 101/305 (33%), Gaps = 67/305 (21%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL------------------EFTDT 52
            +       + NL+  + SIK  +  +  +  L + +                       
Sbjct: 149 DLTEVITGTLWNLSS-HDSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206

Query: 53  KVQRAAAGALRTLAFKNDENKNQIVECNAL-PTLILMLRSE------DSAIHYEAVGVIG 105
            V    AG LR ++ +  E + ++ EC+ L   LI ++++E      DS +    V ++ 
Sbjct: 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLR 266

Query: 106 NL-------------------------VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 140
           NL                           S     + +     ++  I LL    + +  
Sbjct: 267 NLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326

Query: 141 EAALLLGQFAATDS-----DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 195
           EA+    Q             +  + Q  A+  + ++L +   ++ + ++ AL  LA D 
Sbjct: 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA 386

Query: 196 HNQAGIAHNGGLVPLLKLLDSKNGSLQHN-----AAFALYGL----ADNEDNVADFIRVG 246
            N+  I     +  L+K L     +   N         L  +    A+N +         
Sbjct: 387 RNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ 445

Query: 247 GVQKL 251
           G++KL
Sbjct: 446 GIEKL 450

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 44.2 bits (103), Expect = 9e-05
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 2   DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAA 59
            ++        +    + I  +  EN     ++R   GI  LV + +  +   K  RAAA
Sbjct: 409 QNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468

Query: 60  GALRTLA 66
             L+T+ 
Sbjct: 469 LVLQTIW 475

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  130 bits (327), Expect = 9e-35
 Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 20/191 (10%)

Query: 5   CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 64
               + S I  AA  I +   + S  + RV    GI  L++LL+  +  VQRA  GALR 
Sbjct: 19  ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRN 78

Query: 65  LAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 123
           L F++++NK ++ E N +P L+ +L+ + D     +  G++ NL  +     K ++   A
Sbjct: 79  LVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL--KNLMITEA 136

Query: 124 LQPVIGLL----------------SSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAV 166
           L  +   +                     +        L   ++  +D +  + +  G +
Sbjct: 137 LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLI 196

Query: 167 RPLIEMLQSPD 177
             L+  ++   
Sbjct: 197 DSLVHYVRGTI 207

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  100 bits (250), Expect = 3e-24
 Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 21/211 (9%)

Query: 36  MEGGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 93
           ME  +   V +LE          AAA  ++   F+  E + ++ +   +  L+ +L+ ++
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65

Query: 94  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 153
             +     G + NLV    + K EV     +  ++ +L        ++    L    +++
Sbjct: 66  EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 154 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAHN------- 204
              K  ++   A+  L E +  P     E        L      +N  G   N       
Sbjct: 126 DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184

Query: 205 --------GGLVP-LLKLLDSKNGSLQHNAA 226
                    GL+  L+  +       Q +  
Sbjct: 185 GRKAMRRCDGLIDSLVHYVRGTIADYQPDDK 215

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 34/207 (16%), Positives = 65/207 (31%), Gaps = 30/207 (14%)

Query: 166 VRPLIEMLQSPD--VQLREMSAFALGRLA-QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 222
           +   + ML++          +A  +     Q    +  +    G++ LL+LL  +N  +Q
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 223 HNAAFALYGLA-DNEDNVADFIRVGGVQKL-------QDGEFIVQAT------------- 261
                AL  L  ++ DN  +   + GV +L       +D E   Q T             
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 262 ----KDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ-RTIF 316
                + +    + +     G           + +  +   V   L ++ S     R   
Sbjct: 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAM 189

Query: 317 IDGGGL-ELLLGLLGSTNPKQQLDGAV 342
               GL + L+  +  T    Q D   
Sbjct: 190 RRCDGLIDSLVHYVRGTIADYQPDDKA 216

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score =  122 bits (308), Expect = 9e-32
 Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 2/140 (1%)

Query: 377 NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMF--DGGYREKDARDIEIPNIRWEVFEL 434
            +   D   +++G      +  L A+S   R     +    +     IE+  I   V   
Sbjct: 28  ESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMRE 87

Query: 435 MMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFH 494
           ++ +I++G + +  D  QD+++AAD  LL  LK LC   +   I+ EN   + + +  + 
Sbjct: 88  ILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYC 147

Query: 495 AISLRHTCILYIMEHFDKLS 514
              + +    Y+  HF  +S
Sbjct: 148 LHHVHYLATEYLETHFRDVS 167

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score =  115 bits (289), Expect = 5e-29
 Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 9/148 (6%)

Query: 376 NNATLSDVTFL---VEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PN 426
                 D+T       GR F AHR  L A+++ F  +  G + E  +  +E+      P 
Sbjct: 28  RQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPG 87

Query: 427 IRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM 486
              +  E ++ ++YTG + V+     ++L  AD++LL  LK  C   + + + L N  ++
Sbjct: 88  PEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI 147

Query: 487 YELSEAFHAISLRHTCILYIMEHFDKLS 514
           + L+  +    L       I  +F K+ 
Sbjct: 148 HSLAHMYTLSQLALKAADMIRRNFHKVI 175

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score =  100 bits (252), Expect = 1e-25
 Identities = 30/91 (32%), Positives = 41/91 (45%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L DV  LVEGR F  HR  L A S  F+ +F  G         EI  +  E    +M F 
Sbjct: 25  LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
           YT ++ V+     D+L AA    +  +  +C
Sbjct: 85  YTATLTVSTANVGDILSAARLLEIPAVSHVC 115

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 98.5 bits (246), Expect = 2e-24
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 376 NNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMF--DGGYREKDARDIEIPNIRWEVFE 433
             +   D   +++G      +  L A+S   R     +    +     IE+  I   V  
Sbjct: 43  EESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMR 102

Query: 434 LMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
            ++ +I++G + +  D  QD+++AAD  LL  LK LC
Sbjct: 103 EILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLC 139

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 96.9 bits (242), Expect = 3e-24
 Identities = 22/91 (24%), Positives = 42/91 (46%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L+DV  +V   +F AH+  L+A S  F ++F    +   +     P I  E F +++ F+
Sbjct: 29  LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFM 88

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
           YT  +++       ++  A    +E +   C
Sbjct: 89  YTSRLNLREGNIMAVMATAMYLQMEHVVDTC 119

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L DVT  VEG+RF AHR  L A S  F +    G  + +        +  + FE +++F 
Sbjct: 29  LCDVTIFVEGQRFRAHRSVLAACSSYFHSRI-VGQADGELNITLPEEVTVKGFEPLIQFA 87

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
           YT  + ++ +   ++ +  +   +  ++  C
Sbjct: 88  YTAKLILSKENVDEVCKCVEFLSVHNIEESC 118

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 91.1 bits (227), Expect = 3e-22
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L DVT +VE + F AHR  L A S+ F     G  +  D        +    F  +++F 
Sbjct: 32  LCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-DLVVSLPEEVTARGFGPLLQFA 90

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
           YT  + ++ +  ++++R A+   +  L+  C
Sbjct: 91  YTAKLLLSRENIREVIRCAEFLRMHNLEDSC 121

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 91.5 bits (228), Expect = 4e-22
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
             D T  V G  F AH   L   S  F+ ++  G        + +P    E+F L++ F 
Sbjct: 25  YCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGS----VVLPAGFAEIFGLLLDFF 80

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEA 492
           YTG + +T      +L AA +  +     LC+    Q    +  S + +   +
Sbjct: 81  YTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQSGLGQSGPS 133

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 90.7 bits (226), Expect = 4e-22
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
             D T  V G  F AH   L   S  F++++  G        + +P    E+F L++ F 
Sbjct: 24  YCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGS----VVLPAGFAEIFGLLLDFF 79

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
           YTG + +T      +L AA +  +     LC+
Sbjct: 80  YTGHLALTSGNRDQVLLAARELRVPEAVELCQ 111

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 91.6 bits (228), Expect = 4e-22
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L DVT LVEG+RF AHR  L A S  F +    G  + +        +  + FE +++F 
Sbjct: 36  LCDVTVLVEGQRFRAHRSVLAACSSYFHSRI-VGQTDAELTVTLPEEVTVKGFEPLIQFA 94

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
           YT  + ++ D   ++ R  +   +  ++  C
Sbjct: 95  YTAKLILSKDNVDEVCRCVEFLSVHNIEESC 125

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 89.6 bits (223), Expect = 9e-22
 Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L D T ++   +F AHR  L + S+ F A++      ++   ++   ++ + F+ ++ FI
Sbjct: 22  LCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--SENNVFLDQSQVKADGFQKLLEFI 79

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
           YTG++++     +++ +AAD   +E +   C+
Sbjct: 80  YTGTLNLDSWNVKEIHQAADYLKVEEVVTKCK 111

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 90.0 bits (224), Expect = 9e-22
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L DV  +V+ + F+AHR  L  +S  F  +F    +        +  +  + F+ ++ + 
Sbjct: 28  LCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQH-----YTLDFLSPKTFQQILEYA 82

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
           YT ++    +   DLL AA+   +E L+  C
Sbjct: 83  YTATLQAKAEDLDDLLYAAEILEIEYLEEQC 113

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 83.8 bits (208), Expect = 1e-19
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L D TF+V+G  F AH+  L A S+ F+ +F           + +          ++ F+
Sbjct: 27  LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF-----VDQKDVVHLDISNAAGLGQVLEFM 81

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
           YT  + ++ +   D+L  A    ++ +   C 
Sbjct: 82  YTAKLSLSPENVDDVLAVATFLQMQDIITACH 113

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 83.9 bits (208), Expect = 1e-19
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPN-IRWEVFELMMRF 438
             DV+ +V+G  F AHR  L ASS  FR +F+          +E+P  ++ + F+ ++ F
Sbjct: 33  YCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAV----VELPAAVQPQSFQQILSF 88

Query: 439 IYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 470
            YTG + + +     L+  A    ++ +    
Sbjct: 89  CYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKG 120

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
           L D    V  + F AH + L   S                       I    F  ++ F+
Sbjct: 30  LCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQW---------ALGEGISPSTFAQLLNFV 80

Query: 440 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
           Y  SV++     + L  AA    ++ L+  C 
Sbjct: 81  YGESVELQPGELRPLQEAARALGVQSLEEACW 112

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 79.3 bits (196), Expect = 4e-18
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 380 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 439
             DVT +VE R+F AH+  L ASS  F  +F    +      +E+  IR E+F  ++ +I
Sbjct: 31  FCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQV-----VELSFIRAEIFAEILNYI 85

Query: 440 YTGS-VDVTLDIAQDLLRAAD 459
           Y+   V V  D+  +L+++  
Sbjct: 86  YSSKIVRVRSDLLDELIKSGQ 106

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 48/302 (15%), Positives = 91/302 (30%), Gaps = 53/302 (17%)

Query: 10  NSVIRR-AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 68
           N+  +R A+                   +     L  LL+  ++  + ++A  L+     
Sbjct: 3   NTYQKRKASKEYGLYNQCK---------KLNDDELFRLLDDHNSLKRISSARVLQ--LRG 51

Query: 69  NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
             +         A+   I     ++         ++G +       K E      L    
Sbjct: 52  GQD---------AVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNVFNIL--NN 97

Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
             L+   +  +  A     Q    +      I     V             +R  +AFA+
Sbjct: 98  MALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAI 152

Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 248
                       I     +  L+ LL   NG +++ AAFA+     +  ++ D      V
Sbjct: 153 SV----------INDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF----V 198

Query: 249 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 308
           + LQD    V+         L   ++K   RVL+ L   ++  +  V   +  A   L  
Sbjct: 199 EMLQDKNEEVRIE---AIIGLSYRKDK---RVLSVLCDELK--KNTVYDDIIEAAGELGD 250

Query: 309 PD 310
             
Sbjct: 251 KT 252

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 29/237 (12%)

Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
                       +  LL    S  +  +A +L      D           AVR  IE   
Sbjct: 16  LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQD-----------AVRLAIEFCS 64

Query: 175 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 234
             +   R++ AF LG++      +  + +    +     L+ K+  ++  A  +      
Sbjct: 65  DKNYIRRDIGAFILGQIKICKKCEDNVFN----ILNNMALNDKSACVRATAIESTAQRCK 120

Query: 235 NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG 294
                +  I         D    V+      A  +  + +K     +  L+ L++     
Sbjct: 121 KNPIYSPKIVEQSQITAFDKSTNVRRA---TAFAISVINDK---ATIPLLINLLKDPNGD 174

Query: 295 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351
           V+   A A+      +            +  + +L   N + +++  + L    +K 
Sbjct: 175 VRNWAAFAININKYDNSD--------IRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 223

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 34/159 (21%)

Query: 33  RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 92
            +  +  IP L+ LL+  +  V+  AA A+    + N +              + ML+ +
Sbjct: 154 VINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK 204

Query: 93  DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 152
           +  +  EA+  +                   L  +   L    +    +     G+    
Sbjct: 205 NEEVRIEAIIGLSYRKDKR-----------VLSVLCDELKK--NTVYDDIIEAAGELGDK 251

Query: 153 DSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGR 190
                        +  L  ML    D ++   +   L R
Sbjct: 252 T-----------LLPVLDTMLYKFDDNEIITSAIDKLKR 279

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 46/197 (23%), Positives = 74/197 (37%), Gaps = 43/197 (21%)

Query: 33  RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 92
           ++  E  + PL++ L+  D  V+RAAA AL  +  +            A+  LI  L+ E
Sbjct: 45  KIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-----------RAVEPLIKALKDE 93

Query: 93  DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 152
           D  +   A   +G +               A++P+I  L       +  AA  LG+    
Sbjct: 94  DGWVRQSAAVALGQI-----------GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 142

Query: 153 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK 212
                       AV PLI+ L+  D  +R+ +A ALG           I        + K
Sbjct: 143 R-----------AVEPLIKALKDEDGWVRQSAADALGE----------IGGERVRAAMEK 181

Query: 213 LLDSKNGSLQHNAAFAL 229
           L ++  G  +  A   L
Sbjct: 182 LAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 43/227 (18%), Positives = 83/227 (36%), Gaps = 43/227 (18%)

Query: 123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 182
            ++  I  L       +R AA  LG+                AV PLI+ L+  D  +R 
Sbjct: 20  KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 68

Query: 183 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF 242
            +A ALG+          I     + PL+K L  ++G ++ +AA AL  + D      + 
Sbjct: 69  AAADALGQ----------IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER--AVEP 116

Query: 243 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 302
           +    ++ L+D ++ V+      A  L  + ++   R +  L+  ++  +  V++  A A
Sbjct: 117 L----IKALKDEDWFVRIA---AAFALGEIGDE---RAVEPLIKALKDEDGWVRQSAADA 166

Query: 303 LAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 349
           L  +                  +  L  +     +      L    +
Sbjct: 167 LGEIGGER----------VRAAMEKLAETGTGFARKVAVNYLETHKS 203

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 32/187 (17%)

Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 224
            V   I+ LQ     +R  +A+ALG+    + ++  +       PL+K L  ++  ++  
Sbjct: 20  KVEMYIKNLQDDSYYVRRAAAYALGK----IGDERAVE------PLIKALKDEDAWVRRA 69

Query: 225 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 284
           AA AL G   +E  V   I+      L+D +  V+ +    A  L ++ ++   R +  L
Sbjct: 70  AADAL-GQIGDERAVEPLIKA-----LKDEDGWVRQS---AAVALGQIGDE---RAVEPL 117

Query: 285 LYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 344
           +  ++  +  V+   A AL  +               +E L+  L   +   +   A AL
Sbjct: 118 IKALKDEDWFVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADAL 167

Query: 345 FKLANKA 351
            ++  + 
Sbjct: 168 GEIGGER 174

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 42/163 (25%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
            V R AADA+  +  E +           + PL++ L+  D  V+++AA AL  +  +  
Sbjct: 65  WVRRAAADALGQIGDERA-----------VEPLIKALKDEDGWVRQSAAVALGQIGDER- 112

Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN-------------LVHSSPNIKKE 117
                     A+  LI  L+ ED  +   A   +G              L      +++ 
Sbjct: 113 ----------AVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQS 162

Query: 118 VLAA-------GALQPVIGLLSSCCSESQREAALLLGQFAATD 153
              A            +  L  +    +++ A   L    + +
Sbjct: 163 AADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 70.9 bits (173), Expect = 7e-14
 Identities = 40/234 (17%), Positives = 84/234 (35%), Gaps = 24/234 (10%)

Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHY 98
           +  L+ELL+     V + A   +  +A   ++          L  L  +L+ SE   +  
Sbjct: 34  LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQ 88

Query: 99  EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 158
           E     G +    P      L    +  +         +++   +  L + A  +     
Sbjct: 89  EIAKAFGQMAKEKPE-----LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 218
            I     VR  + ML S + + +  +   +  + ++            L  ++ LL   +
Sbjct: 144 SI-----VRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPF----LPRIINLLHDGD 194

Query: 219 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 272
             ++ +A  AL  LA   D +   + +  +++L D   +V  T   V + + RL
Sbjct: 195 EIVRASAVEALVHLATLNDKLRKVV-IKRLEELNDTSSLVNKT---VKEGISRL 244

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 72.5 bits (177), Expect = 1e-13
 Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 15/162 (9%)

Query: 16  AADAITNLAHENSS-----IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           A  A+TNLA   +S      K  V  +     +  L+   +  +QR+    +  +     
Sbjct: 579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL 638

Query: 71  E------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGA 123
                  N            L+ +L+  D         +  N+  + P I KE+L     
Sbjct: 639 TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKEL 698

Query: 124 LQPVIGLLSSCCSESQ---REAALLLGQFAATDSDCKVHIVQ 162
           ++  I + +    + +   R   L  G F     +    +  
Sbjct: 699 IENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYP 740

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 38/267 (14%), Positives = 88/267 (32%), Gaps = 44/267 (16%)

Query: 115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 174
           +K +L    +  +   + +     +++   ++        +    + Q+GAV+ ++E L 
Sbjct: 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLA 508

Query: 175 SP---DVQLREMSAFALGRLA---QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN---- 224
           +       +R +   AL R+             +    +  L +LL        +     
Sbjct: 509 NKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568

Query: 225 ----------AAFALYGLADNEDNVADFIRVGGVQK-----------LQDGEFIVQATKD 263
                     A  AL  LA +E +  + +    V             L +   + ++T +
Sbjct: 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLE 628

Query: 264 C----------VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ- 312
                      +A     LE     R  N L+ L+++++   QR VA   A++ +     
Sbjct: 629 LISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI 688

Query: 313 -RTIFIDGGGLELLLGLLGSTNPKQQL 338
            + +      +E  + +        +L
Sbjct: 689 AKELLTKKELIENAIQVFADQIDDIEL 715

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 51.3 bits (122), Expect = 6e-07
 Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 10/122 (8%)

Query: 10  NSVIRRAA-DAITNLAHENSSIKTRV------RMEGGIPPLVELLEFTDTKVQRAAAGAL 62
           N  ++R+  + I+N+     +I  +       +       LV+LL+ +D + QRA A   
Sbjct: 619 NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF 678

Query: 63  RTLAFKNDENKNQIVECNALPTLILML---RSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 119
             +A        +++    L    + +   + +D  +    + +   L    P+     +
Sbjct: 679 ANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEV 738

Query: 120 AA 121
             
Sbjct: 739 YP 740

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 43/253 (16%), Positives = 79/253 (31%), Gaps = 30/253 (11%)

Query: 3   SNCSRAVNSVIRRAADAITNLAHEN--SSIKTRVRMEGGIPPLVELLEFTDTKVQRA--- 57
           +N       +      A+T +        I  +      IP L ELL  +          
Sbjct: 508 ANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567

Query: 58  -----------AAGALRTLAFKNDEN-----KNQIVECNALPTLILMLRSEDSAIHYEAV 101
                      A  AL  LA     +     K+ +       T+  ++  E+  +    +
Sbjct: 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTL 627

Query: 102 GVIGNLVHSSPNIKKEVLAAG------ALQPVIGLLSSCCSESQREAALLLGQFAATDSD 155
            +I N++     I  +               ++ LL     ESQR  A +    A T   
Sbjct: 628 ELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL 687

Query: 156 CKVHIVQR-GAVRPLIEML--QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK 212
               ++ +   +   I++   Q  D++LR+        L + + +         L    K
Sbjct: 688 IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQK 747

Query: 213 LLDSKNGSLQHNA 225
           L D+ N SL+   
Sbjct: 748 LKDALNMSLKRGD 760

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 22/193 (11%), Positives = 57/193 (29%), Gaps = 7/193 (3%)

Query: 43  LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSED-SAIHYEA 100
            +  +          +  AL  L+ K    K  I    +    L+ M++S+  +   Y  
Sbjct: 339 FINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGL 397

Query: 101 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 160
           + ++ NL        +                     + +  A    +      + K  I
Sbjct: 398 LVIMANLSTLPE---EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY-I 453

Query: 161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS 220
           ++   +  L   + +     ++     +  + +  +    +A  G +  +L+ L +K   
Sbjct: 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDI 513

Query: 221 LQHNAAFALYGLA 233
            +         L 
Sbjct: 514 GEPIRILGCRALT 526

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 46/197 (23%), Positives = 74/197 (37%), Gaps = 43/197 (21%)

Query: 33  RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 92
           ++  E  + PL++ L+  D  V+RAAA AL  +  +            A+  LI  L+ E
Sbjct: 40  KIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-----------RAVEPLIKALKDE 88

Query: 93  DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 152
           D  +   A   +G +               A++P+I  L       +  AA  LG+    
Sbjct: 89  DGWVRQSAAVALGQI-----------GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 137

Query: 153 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK 212
                       AV PLI+ L+  D  +R+ +A ALG           I        + K
Sbjct: 138 R-----------AVEPLIKALKDEDGWVRQSAADALGE----------IGGERVRAAMEK 176

Query: 213 LLDSKNGSLQHNAAFAL 229
           L ++  G  +  A   L
Sbjct: 177 LAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 48/226 (21%), Positives = 84/226 (37%), Gaps = 44/226 (19%)

Query: 81  ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 140
            +   I  L+ +   +   A   +G +               A++P+I  L    +  +R
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 63

Query: 141 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 200
            AA  LGQ                AV PLI+ L+  D  +R+ +A ALG++     ++  
Sbjct: 64  AAADALGQIGDER-----------AVEPLIKALKDEDGWVRQSAAVALGQIG----DERA 108

Query: 201 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 260
           +       PL+K L  ++  ++  AAFAL  + D E  V   I+      L+D +  V+ 
Sbjct: 109 VE------PLIKALKDEDWFVRIAAAFALGEIGD-ERAVEPLIKA-----LKDEDGWVRQ 156

Query: 261 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 306
           +    A  L  +      RV   +  L        ++     L   
Sbjct: 157 S---AADALGEIG---GERVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 63/187 (33%)

Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 224
            V   I+ LQ     +R  +A+ALG+          I     + PL+K L  ++  ++  
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGK----------IGDERAVEPLIKALKDEDAWVRRA 64

Query: 225 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 284
           AA AL  + D                                            R +  L
Sbjct: 65  AADALGQIGD-------------------------------------------ERAVEPL 81

Query: 285 LYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 344
           +  ++  +  V++  A+AL  +               +E L+  L   +   ++  A AL
Sbjct: 82  IKALKDEDGWVRQSAAVALGQIGDER----------AVEPLIKALKDEDWFVRIAAAFAL 131

Query: 345 FKLANKA 351
            ++ ++ 
Sbjct: 132 GEIGDER 138

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 9e-11
 Identities = 82/553 (14%), Positives = 140/553 (25%), Gaps = 171/553 (30%)

Query: 30  IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 89
           I+ R R+            F    V R              +   ++ +       +L L
Sbjct: 113 IEQRDRLYNDNQV------FAKYNVSRL-------------QPYLKLRQA------LLEL 147

Query: 90  RSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 148
           R   +  I     GV+G          K  +A                     +  +  +
Sbjct: 148 RPAKNVLID----GVLG--------SGKTWVALDVCL----------------SYKVQCK 179

Query: 149 FAATDSDCKVH---IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 205
                 D K+    +    +   ++EMLQ    Q+           +        I    
Sbjct: 180 M-----DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE- 233

Query: 206 GLVPLLKLLDSKNGSL---------QHNAAFALYG---LADNED-NVADFIRVGGVQKLQ 252
            L  LLK    +N  L         +   AF L     L       V DF+       + 
Sbjct: 234 -LRRLLKSKPYEN-CLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 253 DGEFIVQATKD-----------CVAKTLKRLEEKIHGRVL-----------NHLLYLMRV 290
                +  T D           C  + L R     + R L                   V
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 291 AEKGVQRRVALALAHLCSPDDQR------TIF-----IDGGGLELLLGLLGSTNPKQQLD 339
               +   +  +L  L  P + R      ++F     I    L L+   +  ++    ++
Sbjct: 351 NCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 340 GAVALFKLANKATTLSSVDAAPPSPTPQVYLGD-QFVNNATLSDVTFLVEGRRFYAHRIC 398
                 KL       S V+  P   T  + +          L +   L        HR  
Sbjct: 410 ------KLHKY----SLVEKQPKEST--ISIPSIYLELKVKLENEYAL--------HRSI 449

Query: 399 L--------LASSDAFRAMFDG------GYREKDARDIEIPNIRWEVFE---LMMRFI-- 439
           +          S D      D       G+  K+    E    R  +F    L  RF+  
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE----RMTLFRMVFLDFRFLEQ 505

Query: 440 ---YTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYE---LSEAF 493
              +  +         + L+    Y          Y    D   E + +           
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYK--------PYICDNDPKYERLVNAILDFLPKIEE 557

Query: 494 HAISLRHTCILYI 506
           + I  ++T +L I
Sbjct: 558 NLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 69/464 (14%), Positives = 120/464 (25%), Gaps = 153/464 (32%)

Query: 214 LDSKNGSLQHNAAFALYG--LADNEDNVADFIRVGGVQKLQDGEFIVQATKDC------- 264
           +D + G  Q+      Y   L+  ED    F+     + +QD    + + ++        
Sbjct: 7   MDFETGEHQYQ-----YKDILSVFED---AFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58

Query: 265 ------------------------VAKTLKR----LEEKIH----GRVLNHLLY------ 286
                                   V + L+     L   I        +   +Y      
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 287 LMRVAEKGVQRRVA-----LAL-AHLCSPDDQRTIFIDG-GGL---ELLLGLLGSTNPKQ 336
           L    +   +  V+     L L   L      + + IDG  G     + L +  S   + 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 337 QLDGAVALFKLANKATTLSSVDAAPPSPTPQVYLGDQFVNNAT-LSDVTFLV-------- 387
           ++D  +    L N  +  + ++           L  Q   N T  SD +  +        
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLE-------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 388 -EGRRFYA---HRICLL-----ASSDAFRAMFDGG------YREKDARDIEIPNIRWEVF 432
            E RR      +  CLL      ++ A+ A F+         R K   D         + 
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 433 ELMMRFIYTGSVDVTLDI--------AQDLLRAA----------------------DQYL 462
                   T   D    +         QDL R                        D + 
Sbjct: 291 LDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 463 LEGLKRLCEYTIAQDISLENVSSMYELSEAFHA---------ISLRHTCILY-------- 505
                +L   T   + SL  +    E  + F           I      +++        
Sbjct: 349 HVNCDKL---TTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 506 --IMEHFDKLSTRPGHSNLIQRIIPEIH-NYFAKALTKPNPHNS 546
             ++    K S            IP I+     K   +   H S
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 33/149 (22%)

Query: 81  ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 140
            L      +  E+  +  +    +              +   A +P++  LS+     + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESLSNEDWRIRG 60

Query: 141 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 200
            AA ++G F               AV PLI++L+     +R  +A +L +          
Sbjct: 61  AAAWIIGNFQDER-----------AVEPLIKLLEDDSGFVRSGAARSLEQ---------- 99

Query: 201 IAHNGGLVPLLKLLDSKNGSLQHNAAFAL 229
           I        + KL ++  G  +  A   L
Sbjct: 100 IGGERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 34/150 (22%)

Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
           + P    +   +  V+R  + AL  +    DE         A   L+  L +ED  I   
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRM---GDE---------AFEPLLESLSNEDWRIRGA 61

Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
           A  +IGN                A++P+I LL       +  AA  L Q           
Sbjct: 62  AAWIIGNFQDER-----------AVEPLIKLLEDDSGFVRSGAARSLEQIGGER------ 104

Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFALG 189
                    + ++ ++     R+++   L 
Sbjct: 105 -----VRAAMEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 224
            + P    +   +  +R   + AL R+  +              PLL+ L +++  ++  
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGA 61

Query: 225 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 284
           AA+ + G   +E  V   I++     L+D    V++     A++L+++  +   RV   +
Sbjct: 62  AAWII-GNFQDERAVEPLIKL-----LEDDSGFVRSG---AARSLEQIGGE---RVRAAM 109

Query: 285 LYLMRVAEKGVQRRVALAL 303
             L        ++     L
Sbjct: 110 EKLAETGTGFARKVAVNYL 128

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 53.9 bits (129), Expect = 9e-08
 Identities = 48/366 (13%), Positives = 117/366 (31%), Gaps = 34/366 (9%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA--F 67
           +SV   A +A  N+A           +   +P L +  E    +V+   A     L    
Sbjct: 217 DSVRLLAVEACVNIAQLLPQEDLEALV---MPTLRQAAEDKSWRVRYMVADKFTELQKAV 273

Query: 68  KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 127
             +  K  +V     P    +++  ++ +   A   +     +     +E +    + P 
Sbjct: 274 GPEITKTDLV-----PAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 328

Query: 128 I-GLLSSCCSESQREAALLLGQFAAT--DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 184
           I  L+S      +   A ++   +      +   H++        +  L+    ++R   
Sbjct: 329 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLP-----LFLAQLKDECPEVRLNI 383

Query: 185 AFALGRLAQDMHNQAGIAHNGGLVPLL-KLLDSKNGSLQHNAAFALYGLAD--NEDNVAD 241
              L  + + +  +        L+P + +L +     ++      +  LA     +   +
Sbjct: 384 ISNLDCVNEVIGIRQLSQS---LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE 440

Query: 242 FIRVGGVQKLQDGEFIV-QATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 300
            +    +  L D  + + +A    + K +++  ++     +   +  M      + R   
Sbjct: 441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTT 500

Query: 301 L----ALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATTLSS 356
           L     L+ +C  D           L  +L + G      + + A +L K+       + 
Sbjct: 501 LFCINVLSEVCGQDITTKHM-----LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 555

Query: 357 VDAAPP 362
                P
Sbjct: 556 QSEVKP 561

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 11/154 (7%)

Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
               +  L      ++ AA   L+ L    ++   +      +P ++ M    +      
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLV---EKFGKEWAHATIIPKVLAMSGDPNYLHRMT 499

Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
            +  I  L        +++     L  V+ +     +  +   A  L +      +  + 
Sbjct: 500 TLFCINVLS---EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL- 555

Query: 160 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 192
              +  V+P++E L    DV ++  +  AL  L+
Sbjct: 556 ---QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 49/360 (13%), Positives = 113/360 (31%), Gaps = 50/360 (13%)

Query: 16   AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 75
               A+  L    S   T   ++  +  L  L+  +D  V + A   L TLA     + ++
Sbjct: 670  TLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK 729

Query: 76   IVECNALPTLILMLRSEDSAI-------------------HYEAVGVIGNLVHSSPNIKK 116
            I   + L  LI ++RS                        +   + ++  L     +   
Sbjct: 730  ISG-SILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 788

Query: 117  EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV---------- 166
             +    +   +   +++      +E   ++GQF     + +     R             
Sbjct: 789  ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH 848

Query: 167  ----------RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 216
                        ++E   SP  +++  +++ALG ++        + +    +P +    +
Sbjct: 849  IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSIS--------VGNLPEYLPFVLQEIT 900

Query: 217  KNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 274
                 Q+    +L  +  +     +  ++       L+  E   + T++ VA+ L +L  
Sbjct: 901  SQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL 960

Query: 275  KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP 334
                 +L  L   +       +  V  A+    S   Q    +    +   L  L   + 
Sbjct: 961  IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDL 1020

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 124 LQPVIGLLSSCCSES---QREAALL-LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 179
           L+PV+  +    +      REAA++  G         +       A+  ++ ++    +Q
Sbjct: 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426

Query: 180 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL---DSKNGSLQHNAAFALYGLADN 235
           ++E +A+ +GR+A  +     I     L  +++        +  +  N ++ +  L + 
Sbjct: 427 VKETTAWCIGRIADSVAES--IDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQ 483

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 48/352 (13%), Positives = 108/352 (30%), Gaps = 53/352 (15%)

Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
           IP  ++  + +  K++  A   +      +      +   + +  L  +   E+  +   
Sbjct: 176 IPKFLQFFKHSSPKIRSHAVACVNQFII-SRTQALMLHIDSFIENLFALAGDEEPEVRKN 234

Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
               +  L+    +          +  ++  +     +     AL   +F  T ++  + 
Sbjct: 235 VCRALVMLLEVRMD-----RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289

Query: 160 IVQRGA-----VRPLIEMLQSPDVQLREM----------------------SAFALGRLA 192
                      +  L+  ++  D+ +  +                      SA AL  LA
Sbjct: 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349

Query: 193 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-----EDNVADFIRVGG 247
               ++  + H   L+   +LL      ++ +    L  +A+         + + I    
Sbjct: 350 NVYRDEL-LPHILPLLK--ELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL- 405

Query: 248 VQKLQDGEFIVQATKDCVAKTLKRL--------EEKIHGRVLNHLLYLMRVAEKGVQRRV 299
           +Q L D + +V++       TL R          +     ++  LL  +  + K VQ   
Sbjct: 406 IQCLSDKKALVRSI---TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAA 462

Query: 300 ALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 351
             A A L        +      L+ L+        K  L    A+  LA+  
Sbjct: 463 CSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 124 LQPVIGLLSSCCSES---QREAALL-LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 179
           +  V+  +           R+AA++  G         ++  +   A+  LIE+++ P V 
Sbjct: 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423

Query: 180 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLL----KLLDSKNGSLQHNAAFALYGLADN 235
           +R+ +A+ +GR+ + +       ++  L PLL    + L +    +  N  +A   LA+ 
Sbjct: 424 VRDTAAWTVGRICELLPEA--AINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEA 480

Query: 236 EDNVADF 242
               AD 
Sbjct: 481 AYEAADV 487

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 124 LQPVIGLLSSCCSES---QREAALL-LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 179
           +  V+  +           R+AA++  G         ++  +   A+  LIE+++ P V 
Sbjct: 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423

Query: 180 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 214
           +R+ +A+ +GR+ + +       ++  L PLL+ L
Sbjct: 424 VRDTAAWTVGRICELLPEA--AINDVYLAPLLQCL 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	548
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.98
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.97
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.97
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.97
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.96
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.96
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.96
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.96
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.96
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.96
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.91
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.9
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.89
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.89
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.89
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.89
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.88
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.87
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.87
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.86
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.86
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.86
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.86
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.84
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.83
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.63
3grl_A	651	General vesicular transport factor P115; vesicle t	99.61
3grl_A	651	General vesicular transport factor P115; vesicle t	99.61
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.56
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.54
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.52
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.49
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.48
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.46
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.45
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.45
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.45
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.41
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.4
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.34
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.34
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.31
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.26
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.19
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.16
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.16
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.12
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	99.11
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.1
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.09
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.09
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.0
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.9
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.87
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.84
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.77
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.77
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.76
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.75
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.73
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.72
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.7
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.7
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.69
2eqx_A	105	Kelch repeat and BTB domain-containing protein 4;	98.66
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	98.6
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.59
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	98.56
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.56
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.55
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.55
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.51
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.5
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.39
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.34
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	98.32
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.25
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.1
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.92
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.8
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	97.77
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.52
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.5
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.48
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.46
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.38
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.34
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.24
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.2
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.05
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.04
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.0
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.95
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.92
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.88
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.82
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	96.71
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.61
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	96.57
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.43
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	96.41
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.4
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.32
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	96.05
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	95.76
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.68
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	95.66
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.52
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.22
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.07
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.98
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.88
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.63
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.6
2x19_B	963	Importin-13; nuclear transport, protein transport;	94.42
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.35
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.31
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	93.23
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	92.84
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.7
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	91.88
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	91.07
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	90.01
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.97
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	89.32
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	88.53
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	87.97
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	87.69
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	87.38
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	85.78
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	84.6
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	83.85
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	83.6
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	82.57
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	82.21
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	82.2
2eqx_A	105	Kelch repeat and BTB domain-containing protein 4;	81.64

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=6.3e-33  Score=284.58  Aligned_cols=342  Identities=19%  Similarity=0.230  Sum_probs=289.5

Q ss_pred             hhhHHHHHHHHHHHHHh-h-hChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940            8 AVNSVIRRAADAITNLA-H-ENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPT   84 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~-~-~~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   84 (548)
                      ..++.+..|+..++.+. . .+|.. ..+++.|++|.|+++|+++ ++.+|..|+++|+|++.++++++..+++.|+++.
T Consensus        69 ~d~~~q~~a~~~~rklls~e~~ppi-~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~  147 (510)
T 3ul1_B           69 NNLESQLQATQAARKLLSREKQPPI-DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA  147 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSCCCH-HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCchH-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH
Confidence            45688999999999875 2 34444 4577899999999999754 5899999999999999999999999999999999


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCCh-----HHHHHHHHHHHHhhcCCchhHHH
Q 008940           85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-----ESQREAALLLGQFAATDSDCKVH  159 (548)
Q Consensus        85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-----~~~~~a~~~L~~l~~~~~~~~~~  159 (548)
                      |+.+|.+++.++++.|+++|++|+.+++..++.+.+.|+++.|+.++.+.+.     .+.+.++|+|.+++.+.......
T Consensus       148 Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  227 (510)
T 3ul1_B          148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL  227 (510)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence            9999999999999999999999999999999999999999999999987653     46788999999999876555444


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-Cc
Q 008940          160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-ED  237 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~  237 (548)
                      ....|+++.|+.++.+++++++..++++|++|+.....+ ..+...|+++.|+.++.+++..++..++.+|++++.. +.
T Consensus       228 ~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~  307 (510)
T 3ul1_B          228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE  307 (510)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH
Confidence            555689999999999999999999999999999877654 5567889999999999999999999999999999765 45


Q ss_pred             chHHHHHhcCcccccccchhhhh---hhHHHH------HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940          238 NVADFIRVGGVQKLQDGEFIVQA---TKDCVA------KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  308 (548)
Q Consensus       238 ~~~~~~~~g~i~~L~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~  308 (548)
                      ....+.+.|+++.|.........   ...|+.      ....+.+.+.+.++++.|+.++.+++..+|..|+|+|+|++.
T Consensus       308 ~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          308 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            66778899999988764432221   112221      123456677889999999999999999999999999999986


Q ss_pred             C--CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          309 P--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       309 ~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +  .+....+++.|+++.|+++|.+++++++..++++|.|+...
T Consensus       388 ~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  431 (510)
T 3ul1_B          388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  431 (510)
T ss_dssp             HCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            4  34567789999999999999999999999999999999764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=280.54  Aligned_cols=309  Identities=20%  Similarity=0.220  Sum_probs=265.1

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCc----------hHHHHhhccCC--HH-----HHH-------HHHHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGI----------PPLVELLEFTD--TK-----VQR-------AAAGALRT   64 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~ll~~~~--~~-----v~~-------~a~~~L~~   64 (548)
                      .++++.+|+++|.+++.++++......+.|++          +.+++++.+..  .+     +++       .|+++|++
T Consensus        95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~n  174 (458)
T 3nmz_A           95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK  174 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHH
Confidence            46999999999999999999888888888888          66667776542  12     444       99999999


Q ss_pred             hhccCcchhhHhhhcCChHHHHHHhcc-----------CChHHHHHHHHHHHHhhcCChhHHHHHHh-cCChHHHHHhhh
Q 008940           65 LAFKNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLS  132 (548)
Q Consensus        65 l~~~~~~~~~~~~~~g~i~~Lv~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~  132 (548)
                      ++. ++++|..+.+.|+++.|+.+|..           .++.++..|+++|.||+.+++..+..+.. .|+||.|+++|.
T Consensus       175 ls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~  253 (458)
T 3nmz_A          175 LSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK  253 (458)
T ss_dssp             HTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG
T ss_pred             hcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh
Confidence            987 69999999999999999999952           34678999999999999888777777765 456999999999


Q ss_pred             cCChHHHHHHHHHHHHhhcC-CchhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhc-CCcchhhhH-hcCChH
Q 008940          133 SCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-DMHNQAGIA-HNGGLV  208 (548)
Q Consensus       133 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~-~~~~l~  208 (548)
                      +++++++..|+|+|.||+.. ++.++..+.+.|+++.|+.+| +++++.+++.++.+|+||+. ..+++..+. ..|+++
T Consensus       254 s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~  333 (458)
T 3nmz_A          254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA  333 (458)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHH
Confidence            99999999999999999874 567889999999999999975 56788999999999999998 557777777 789999


Q ss_pred             HHHHhhcCCCh----hHHHHHHHHHHhccc----CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhh
Q 008940          209 PLLKLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV  280 (548)
Q Consensus       209 ~L~~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (548)
                      .|+.+|.++++    ++++.++++|+||+.    +++++..+                                 .+.|+
T Consensus       334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i---------------------------------~~~G~  380 (458)
T 3nmz_A          334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL---------------------------------RENNC  380 (458)
T ss_dssp             HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH---------------------------------HHTTH
T ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHH---------------------------------HHccc
Confidence            99999987654    489999999999985    55555444                                 44558


Q ss_pred             hHHHHHHHHhhhhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          281 LNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       281 ~~~L~~ll~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ++.|+.+|.+++..++.+|+++|+|++. +++++..+.+.|+++.|++++.++++.+++.|+++|.||+.+.
T Consensus       381 i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            8899999999999999999999999985 5778889999999999999999999999999999999999763

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.7e-32  Score=276.99  Aligned_cols=308  Identities=21%  Similarity=0.241  Sum_probs=264.2

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +..++++..|+.+|.+++.+++.++..+.+.|++|.|+++|+++++.++..|+++|.+++.++++++..+.+.|+++.|+
T Consensus        13 s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv   92 (457)
T 1xm9_A           13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV   92 (457)
T ss_dssp             SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence            34578999999999999988888898899999999999999999999999999999999987799999999999999999


Q ss_pred             HHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh--------c--------CChHHHHHHHHHHHHh
Q 008940           87 LMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--------S--------CCSESQREAALLLGQF  149 (548)
Q Consensus        87 ~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--------~--------~~~~~~~~a~~~L~~l  149 (548)
                      ++|. ++++++++.++++|+||+.+ ++.+..+++ |++|.|++++.        +        .++++.+.|+|+|.|+
T Consensus        93 ~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL  170 (457)
T 1xm9_A           93 SLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL  170 (457)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH
Confidence            9999 88999999999999999988 778888888 99999999993        2        2456777999999999


Q ss_pred             hcCCchhHHHHHhc-CChHHHHHhhCC-----------------------------------------------------
Q 008940          150 AATDSDCKVHIVQR-GAVRPLIEMLQS-----------------------------------------------------  175 (548)
Q Consensus       150 ~~~~~~~~~~~~~~-g~v~~L~~ll~~-----------------------------------------------------  175 (548)
                      +.. ++++..+.+. |+++.|+.++++                                                     
T Consensus       171 s~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (457)
T 1xm9_A          171 SSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC  249 (457)
T ss_dssp             TTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------------
T ss_pred             ccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccch
Confidence            977 8888888887 999998877752                                                     


Q ss_pred             ----------------------------------------------CCHHHHHHHHHHHHHhhcCCcc------hhhhHh
Q 008940          176 ----------------------------------------------PDVQLREMSAFALGRLAQDMHN------QAGIAH  203 (548)
Q Consensus       176 ----------------------------------------------~~~~v~~~a~~~L~~l~~~~~~------~~~~~~  203 (548)
                                                                    +++.+++.|+++|+|++.....      +..+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~  329 (457)
T 1xm9_A          250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK  329 (457)
T ss_dssp             ----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTT
T ss_pred             hhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHH
Confidence                                                          1245677789999999976533      223446


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHH
Q 008940          204 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH  283 (548)
Q Consensus       204 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (548)
                      .|+++.|+++|.+++.+++..|+++|.|++.+++....+                                  ..+++++
T Consensus       330 ~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i----------------------------------~~~~i~~  375 (457)
T 1xm9_A          330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM----------------------------------GNQVFPE  375 (457)
T ss_dssp             SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH----------------------------------HHHTHHH
T ss_pred             cCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH----------------------------------HHhhhHH
Confidence            899999999999999999999999999999876554332                                  2357888


Q ss_pred             HHHHHHhhh------hhhhhhHHHHhhhccCC-CccceeeecCCchHHHHHhhcCC-CCccchhhHHHHHHHhhhc
Q 008940          284 LLYLMRVAE------KGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       284 L~~ll~~~~------~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~  351 (548)
                      |+.+|.+++      .++...++++|.++... ++..+.+.+.||++.|++++.++ ++++++.|++.|.++..+.
T Consensus       376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            889888754      36788999999999754 55778889999999999999999 8999999999999987653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=4.4e-32  Score=280.02  Aligned_cols=311  Identities=17%  Similarity=0.232  Sum_probs=276.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      ..++++..|+++|.+++.++++....+.+.|++|.|+.+|++++..+++.|+++|++++.++++++..+.+.|+++.|+.
T Consensus       132 ~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~  211 (529)
T 3tpo_A          132 DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA  211 (529)
T ss_dssp             TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHH
Confidence            45789999999999999888999999999999999999999999999999999999999878999999999999999999


Q ss_pred             HhccCC-----hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940           88 MLRSED-----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ  162 (548)
Q Consensus        88 ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  162 (548)
                      ++..++     ..+...++++|.+++.+...........+++|.|+.++.+++++++..++|+|.+++.+.+.....+..
T Consensus       212 lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~  291 (529)
T 3tpo_A          212 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK  291 (529)
T ss_dssp             TTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT
T ss_pred             HHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence            998654     356788999999999876554445555688999999999999999999999999999888788888899


Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHH
Q 008940          163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD  241 (548)
Q Consensus       163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  241 (548)
                      .|+++.|+.++.++++.++..++.+|+|++...+. ...+.+.|+++.|..++.++++.++..|+++|+|++.+..... 
T Consensus       292 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~-  370 (529)
T 3tpo_A          292 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI-  370 (529)
T ss_dssp             TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHH-
T ss_pred             ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHH-
Confidence            99999999999999999999999999999976644 5678889999999999999999999999999999987654322 


Q ss_pred             HHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--CccceeeecC
Q 008940          242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDG  319 (548)
Q Consensus       242 ~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~  319 (548)
                                                     ..+.+.|+++.|+.++.+++..++..|+|+|+|++.+  ++....+++.
T Consensus       371 -------------------------------~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~  419 (529)
T 3tpo_A          371 -------------------------------QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC  419 (529)
T ss_dssp             -------------------------------HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred             -------------------------------HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence                                           2245567899999999999999999999999999864  3456778999


Q ss_pred             CchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          320 GGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       320 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      |+++.|+++|.+++++++..++.+|.++...
T Consensus       420 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          420 GIIEPLMNLLSAKDTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.4e-32  Score=275.42  Aligned_cols=343  Identities=21%  Similarity=0.254  Sum_probs=275.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLI   86 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv   86 (548)
                      ..++++..|+.+|.+++..+++++..+.+.|+||.|+++|++++..+++.|+++|.+|+.+ +++++..+.+.|+++.|+
T Consensus        60 ~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV  139 (584)
T 3l6x_A           60 RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALV  139 (584)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHH
Confidence            4578999999999999988999999999999999999999999999999999999999985 689999999999999999


Q ss_pred             HHhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh------------------cCChHHHHHHHHHHH
Q 008940           87 LMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS------------------SCCSESQREAALLLG  147 (548)
Q Consensus        87 ~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~------------------~~~~~~~~~a~~~L~  147 (548)
                      .+|.+ .+.++++.++++|++|+.. ++.+..++. +++|.|++++.                  ..++++++.|+++|.
T Consensus       140 ~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~  217 (584)
T 3l6x_A          140 RLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLR  217 (584)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHH
Confidence            99996 5789999999999999874 777888886 57999999872                  124689999999999


Q ss_pred             HhhcCCchhHHHHHhc-CChHHHHHhhCC------CCHHHHHHHHHHHHHhhcCCcc-----------------------
Q 008940          148 QFAATDSDCKVHIVQR-GAVRPLIEMLQS------PDVQLREMSAFALGRLAQDMHN-----------------------  197 (548)
Q Consensus       148 ~l~~~~~~~~~~~~~~-g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~-----------------------  197 (548)
                      ||++.++..+..+.+. |+++.|+.++++      .+...++.|+++|+||+...+.                       
T Consensus       218 NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~  297 (584)
T 3l6x_A          218 NVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSP  297 (584)
T ss_dssp             HHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CC
T ss_pred             HHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccC
Confidence            9998887888888874 567799999874      4667999999999999965210                       


Q ss_pred             ---hhhhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhcccCCc-----chHHHHHhcCcccccccchhhhh-hhHHHHH
Q 008940          198 ---QAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNED-----NVADFIRVGGVQKLQDGEFIVQA-TKDCVAK  267 (548)
Q Consensus       198 ---~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~g~i~~L~~~~~~~~~-~~~~~~~  267 (548)
                         ...+...++++.++.+|. +.++.+++.|+++|.||+....     .+..+.+.++++.|++....... .......
T Consensus       298 ~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~  377 (584)
T 3l6x_A          298 ARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASG  377 (584)
T ss_dssp             CCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             chhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence               112223344667788886 4679999999999999987542     22344457888887664432221 1111222


Q ss_pred             HHHHH------HHhhhhhhhHHHHHHHHhh--------hhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCC
Q 008940          268 TLKRL------EEKIHGRVLNHLLYLMRVA--------EKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGST  332 (548)
Q Consensus       268 ~~~~~------~~~~~~~~~~~L~~ll~~~--------~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~  332 (548)
                      ++.++      +..+..++++.|+.+|.++        +.+++..|+++|+|++. ++++++.+.+.|+++.|++++.++
T Consensus       378 aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~  457 (584)
T 3l6x_A          378 ALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSG  457 (584)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred             HHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC
Confidence            33222      3445788999999999886        35778899999999965 566888999999999999999986


Q ss_pred             --CCccchhhHHHHHHHhhhcc
Q 008940          333 --NPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       333 --~~~v~~~a~~~L~~l~~~~~  352 (548)
                        .+.+++.|+++|++|..+..
T Consensus       458 ~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          458 NRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             SSCHHHHHHHHHHHHHHHTSHH
T ss_pred             CCChHHHHHHHHHHHHHHcCHH
Confidence              77889999999999987653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1e-31  Score=277.27  Aligned_cols=310  Identities=20%  Similarity=0.262  Sum_probs=268.8

Q ss_pred             hhhHHHHHHHHHHHHHh-hhChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            8 AVNSVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ..++.+..|+..+.++. .+.......+++.|++|.|+++|+. +++.++..|+++|.+++.++++++..+++.|+++.|
T Consensus        88 ~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~L  167 (529)
T 3tpo_A           88 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF  167 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence            34677889999998875 3333334567889999999999975 558999999999999999889999999999999999


Q ss_pred             HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-----hHHHHHHHHHHHHhhcCCchhHHHH
Q 008940           86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~  160 (548)
                      +.+|.+++.++++.|+++|++|+.++++++..+.+.|+++.|+.++...+     ..+.+.++|+|.+++.+........
T Consensus       168 v~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  247 (529)
T 3tpo_A          168 ISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD  247 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            99999999999999999999999999999999999999999999998755     3467889999999998765555555


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc-
Q 008940          161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-  238 (548)
Q Consensus       161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-  238 (548)
                      ...|++|.|+.++.+++++++..++++|.+++..... ...+...|+++.|+.++.++++.++..++.+|++++...+. 
T Consensus       248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~  327 (529)
T 3tpo_A          248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ  327 (529)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHH
Confidence            5578999999999999999999999999999987765 45567889999999999999999999999999999875543 


Q ss_pred             hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeee
Q 008940          239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFI  317 (548)
Q Consensus       239 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~  317 (548)
                      ...+                                 .+.|+++.|+.++.++++.++..|+|+|+|++.+. ..+..+.
T Consensus       328 ~~~i---------------------------------~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~  374 (529)
T 3tpo_A          328 TQKV---------------------------------IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV  374 (529)
T ss_dssp             HHHH---------------------------------HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHH---------------------------------hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3333                                 44557788889999999999999999999998764 4667788


Q ss_pred             cCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          318 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       318 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +.|+++.|+.++.+++.+++..|+++|.|++.+
T Consensus       375 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          375 NHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.98  E-value=4.8e-32  Score=283.37  Aligned_cols=308  Identities=18%  Similarity=0.190  Sum_probs=264.4

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHH-hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcc----------------
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE----------------   71 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------------   71 (548)
                      .+++++.|+++|.+|+ .+++.+..+. +.|++|.|+++|+++++.++..|+++|.|++.+.+.                
T Consensus       392 d~~v~~~AveaLayLS-~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~  470 (810)
T 3now_A          392 DKDIRRWAADGLAYLT-LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQ  470 (810)
T ss_dssp             CSSHHHHHHHHHHHHT-TSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCC
T ss_pred             CHHHHHHHHHHHHHHh-CCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhc
Confidence            4678999999999999 5667776666 579999999999999999999999999999985421                


Q ss_pred             -------------hh---hHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC
Q 008940           72 -------------NK---NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC  135 (548)
Q Consensus        72 -------------~~---~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~  135 (548)
                                   ++   +.+.+.|+++.|+.++.++++.+++.|+|+|+||+.+ +++|..+++.|++|.|+.++.+++
T Consensus       471 ~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~  549 (810)
T 3now_A          471 HIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGT  549 (810)
T ss_dssp             SCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             cCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCC
Confidence                         12   6788899999999999999999999999999999865 779999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCchhHHH--HHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHH
Q 008940          136 SESQREAALLLGQFAATDSDCKVH--IVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLL  211 (548)
Q Consensus       136 ~~~~~~a~~~L~~l~~~~~~~~~~--~~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~  211 (548)
                      +..++.|+|+|.+++.+.......  ....|++++|+.+|.++ +...+..|+++|.||+..+ +.+..+++.|+++.|.
T Consensus       550 ~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv  629 (810)
T 3now_A          550 EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIE  629 (810)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence            999999999999998653322110  01246999999999875 3345678999999999875 5577889999999999


Q ss_pred             HhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 008940          212 KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA  291 (548)
Q Consensus       212 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~  291 (548)
                      .++.++++.+++.|+++|+|++.+++.+..+.+                                ..+.++.|+.++.+.
T Consensus       630 ~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~--------------------------------~~g~l~~Lv~LL~s~  677 (810)
T 3now_A          630 YYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEG--------------------------------NNDRVKFLALLCEDE  677 (810)
T ss_dssp             HHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHS--------------------------------SSSHHHHHHHGGGCS
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHh--------------------------------ccCcHHHHHHHhcCC
Confidence            999999999999999999999988776655532                                245789999999999


Q ss_pred             hhhhhhhHHHHhhhccC-CCccceeeec-CCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          292 EKGVQRRVALALAHLCS-PDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       292 ~~~~~~~a~~aL~~l~~-~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +..+|.+|+|+|++++. ++...+.+++ .|+++.|++++.+++.++|..|+|++.|++.+
T Consensus       678 d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          678 DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            99999999999999998 4566667777 89999999999999999999999999999874

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.97  E-value=1.3e-30  Score=269.94  Aligned_cols=343  Identities=21%  Similarity=0.252  Sum_probs=292.8

Q ss_pred             hhhHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCchHHHHhhccCC-HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            8 AVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ..++++..|+.+|.+++...+ .....+.+.|+++.|+++|++++ +.++..|+++|.+++.++++++..+.+.|+++.|
T Consensus        86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L  165 (528)
T 4b8j_A           86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF  165 (528)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHH
Confidence            357889999999999975443 55667888999999999999887 9999999999999999889999999999999999


Q ss_pred             HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhhcCCchhHHHHHhcC
Q 008940           86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRG  164 (548)
Q Consensus        86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g  164 (548)
                      +.+|.++++.++..|+++|++++.+.+..+..+...|+++.|+.++ .+.++.++..++|+|.+++...+... .....|
T Consensus       166 ~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~  244 (528)
T 4b8j_A          166 VKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRP  244 (528)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHH
Confidence            9999999999999999999999999899999999999999999999 66789999999999999997754333 344579


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHH
Q 008940          165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADF  242 (548)
Q Consensus       165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~  242 (548)
                      +++.|+.++.++++.++..++++|++++...+.+ ..+.+.|+++.|+.+|.++++.++..|+++|++++.. +.....+
T Consensus       245 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  324 (528)
T 4b8j_A          245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI  324 (528)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999876654 5677889999999999999999999999999999874 4556667


Q ss_pred             HHhcCcccccccchhh-hh---hhHHHH------HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--C
Q 008940          243 IRVGGVQKLQDGEFIV-QA---TKDCVA------KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--D  310 (548)
Q Consensus       243 ~~~g~i~~L~~~~~~~-~~---~~~~~~------~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~  310 (548)
                      .+.|+++.|+...... ..   ...|+.      ........+.+.++++.|+.+|.++++.++..|+++|++++..  +
T Consensus       325 ~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~  404 (528)
T 4b8j_A          325 IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH  404 (528)
T ss_dssp             HTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence            7888888876543322 11   111111      1223455667789999999999999999999999999999865  4


Q ss_pred             ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          311 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       311 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      +....+.+.|+++.|+.++.++++.++..++++|.++....
T Consensus       405 ~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (528)
T 4b8j_A          405 DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG  445 (528)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            56677888999999999999999999999999999998754

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=8.3e-31  Score=252.50  Aligned_cols=269  Identities=20%  Similarity=0.235  Sum_probs=233.7

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc-----------CCHHHHHHHHHHHHHhhccCcchhhHhhhc
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVEC   79 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   79 (548)
                      ..+.+|+++|.+++ .++++|..+.+.|++++|+.+|..           .++.+|..|+++|.+++.+++.++..+...
T Consensus        47 ~~~~~A~~aL~nls-~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            34458999999999 569999999999999999999953           237799999999999998777788888654


Q ss_pred             -CChHHHHHHhccCChHHHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhhcCCchh
Q 008940           80 -NALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDC  156 (548)
Q Consensus        80 -g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~  156 (548)
                       |.++.|+.+|.++++++++.|+++|++|+.. +++.+..+.+.|++|.|+++| ++.++++++.++.+|+||+..++++
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence             5599999999999999999999999999975 577899999999999999975 6677899999999999999867777


Q ss_pred             HHHHH-hcCChHHHHHhhCCCCH----HHHHHHHHHHHHhhc----CCcchhhhHhcCChHHHHHhhcCCChhHHHHHHH
Q 008940          157 KVHIV-QRGAVRPLIEMLQSPDV----QLREMSAFALGRLAQ----DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF  227 (548)
Q Consensus       157 ~~~~~-~~g~v~~L~~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~  227 (548)
                      +..+. ..|+++.|+.+|+++++    ++++.++++|+||+.    .++.+..+.+.|+++.|+.+|.+++..+++.|++
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~  285 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG  285 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence            77777 78999999999997654    599999999999996    6677888899999999999999999999999999


Q ss_pred             HHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhc
Q 008940          228 ALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL  306 (548)
Q Consensus       228 ~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l  306 (548)
                      +|+|++. +++++..+.+                                 .|+++.|+.+++++++.++..|+++|.||
T Consensus       286 aL~nLa~~~~~~~~~i~~---------------------------------~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL  332 (354)
T 3nmw_A          286 TLWNLSARNPKDQEALWD---------------------------------MGAVSMLKNLIHSKHKMIAMGSAAALRNL  332 (354)
T ss_dssp             HHHHHTSSCHHHHHHHHH---------------------------------TTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHH---------------------------------CCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            9999995 5555555544                                 45788899999999999999999999999


Q ss_pred             cCCCccc
Q 008940          307 CSPDDQR  313 (548)
Q Consensus       307 ~~~~~~~  313 (548)
                      +.+.+.+
T Consensus       333 ~~~~~~~  339 (354)
T 3nmw_A          333 MANRPAK  339 (354)
T ss_dssp             HTTCCGG
T ss_pred             HcCCHHH
Confidence            8775533

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=3e-31  Score=277.37  Aligned_cols=342  Identities=13%  Similarity=0.088  Sum_probs=278.7

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-chhhHhhhcCC---
Q 008940            6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNA---   81 (548)
Q Consensus         6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~---   81 (548)
                      ++..+.+++.|++++.+.+ .++..+..+.+.|+ +.|+.++++++..+|..|+.+|.+++.... +........|.   
T Consensus       300 ~s~~~~~q~~A~~al~~aa-~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~  377 (810)
T 3now_A          300 TTDDELQQRVACECLIAAS-SKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK  377 (810)
T ss_dssp             HSSCHHHHHHHHHHHHHHT-TSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc-CCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence            3456788899999999988 67999999999875 999999999999999999999999975221 33323333444   


Q ss_pred             -hHHHHHHhccC--ChHHHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc---
Q 008940           82 -LPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDS---  154 (548)
Q Consensus        82 -i~~Lv~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---  154 (548)
                       ++.++++|.++  +.++++.|+++|.+|+.+ ++.+..++ +.|++|.|+.+++++++.++..++++|.|++.+.+   
T Consensus       378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~  456 (810)
T 3now_A          378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE  456 (810)
T ss_dssp             HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence             55677888877  899999999999999876 55666666 57999999999999999999999999999997542   


Q ss_pred             --------------------------hhH---HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcC
Q 008940          155 --------------------------DCK---VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG  205 (548)
Q Consensus       155 --------------------------~~~---~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  205 (548)
                                                ..+   +.+++.|++|.|+.+++++++.+++.|+|+|+|++.+.+++..+.+.|
T Consensus       457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G  536 (810)
T 3now_A          457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEG  536 (810)
T ss_dssp             CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence                                      112   578889999999999999999999999999999998888899999999


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHH---HHhcCcccccccchhhhh----hhHHHHH------HHHHH
Q 008940          206 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF---IRVGGVQKLQDGEFIVQA----TKDCVAK------TLKRL  272 (548)
Q Consensus       206 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~---~~~g~i~~L~~~~~~~~~----~~~~~~~------~~~~~  272 (548)
                      ++++|+.+|.++++..++.|+++|.+++.+.+....+   ...|++++|+........    ...+.+-      .-+..
T Consensus       537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~  616 (810)
T 3now_A          537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR  616 (810)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999999998654333222   124678877654321111    1112211      12445


Q ss_pred             HHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec-CCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          273 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       273 ~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +.+++.|+++.|+.+|.++++.+|..|+++|+|++.+++.+..+.+ .|+++.|+.++++++..+|..|+++|.+++.+
T Consensus       617 ~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~  695 (810)
T 3now_A          617 QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV  695 (810)
T ss_dssp             HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence            5677889999999999999999999999999999998887766665 78999999999999999999999999999984

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.97  E-value=4.7e-31  Score=261.61  Aligned_cols=301  Identities=20%  Similarity=0.256  Sum_probs=254.3

Q ss_pred             HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC------------CHHHHHHHHHHHHHhhccCcchhhHhhhcCCh
Q 008940           15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT------------DTKVQRAAAGALRTLAFKNDENKNQIVECNAL   82 (548)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   82 (548)
                      ...+.|..+. .+++.+..+++.|++|.|+++|+..            +++++.+|+++|.|++.++++......+.|++
T Consensus        48 ~~~~~ll~~~-~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~  126 (458)
T 3nmz_A           48 DMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVL  126 (458)
T ss_dssp             HHHHHHHHHH-SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHH
Confidence            3677888888 5777888899999999999999863            36999999999999999999999888888877


Q ss_pred             ----------HHHHHHhccCC--hH-----HHH-------HHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-----
Q 008940           83 ----------PTLILMLRSED--SA-----IHY-------EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-----  133 (548)
Q Consensus        83 ----------~~Lv~ll~~~~--~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----  133 (548)
                                +.+++++.+.+  .+     +++       .|+|+|+|++.+ +++|+.+.+.|+++.|+.++..     
T Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~  205 (458)
T 3nmz_A          127 HLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMY  205 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhccc
Confidence                      55667776542  22     444       999999999765 8999999999999999999952     


Q ss_pred             ------CChHHHHHHHHHHHHhhcCCchhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CcchhhhHhc
Q 008940          134 ------CCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAHN  204 (548)
Q Consensus       134 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~  204 (548)
                            .++.+++.|+|+|.|++.+++.++..+.. .|++|.|+.+|+++++++++.|+++|+||+..  ..++..+.+.
T Consensus       206 ~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~  285 (458)
T 3nmz_A          206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV  285 (458)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT
T ss_pred             ccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc
Confidence                  23668999999999999887777776654 56699999999999999999999999999975  3567888999


Q ss_pred             CChHHHHHhh-cCCChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhH
Q 008940          205 GGLVPLLKLL-DSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN  282 (548)
Q Consensus       205 ~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (548)
                      |+++.|+++| .++++.+++.++.+|+||+. .++++..+.                                ...|+++
T Consensus       286 GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~--------------------------------~~~Gal~  333 (458)
T 3nmz_A          286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC--------------------------------AVDGALA  333 (458)
T ss_dssp             THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH--------------------------------HSTTHHH
T ss_pred             CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH--------------------------------HhcCcHH
Confidence            9999999975 56788999999999999998 556665553                                1345888


Q ss_pred             HHHHHHHhhhh----hhhhhHHHHhhhccC----CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          283 HLLYLMRVAEK----GVQRRVALALAHLCS----PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       283 ~L~~ll~~~~~----~~~~~a~~aL~~l~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                      .|+.+|.+.+.    .++..|+++|.|++.    ++++++.+.+.|+++.|+++|.+++..+++.|+++|.|++.
T Consensus       334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence            89999987554    489999999999984    67788899999999999999999999999999999999985

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=9.7e-31  Score=268.34  Aligned_cols=343  Identities=16%  Similarity=0.223  Sum_probs=289.3

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ...+++|..|+++|.+++.++++.+..+.+.|++|.|+++|++++..+++.|+++|++++.++++.+..+.+.|+++.|+
T Consensus       112 ~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll  191 (510)
T 3ul1_B          112 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL  191 (510)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHH
Confidence            34578999999999999988999999999999999999999999999999999999999987889999999999999999


Q ss_pred             HHhccCC-----hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH
Q 008940           87 LMLRSED-----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV  161 (548)
Q Consensus        87 ~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  161 (548)
                      .++..++     ..+++.+++++.+++.+...........+++|.|++++.+.+++++..++|+|.+++...+.....+.
T Consensus       192 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~  271 (510)
T 3ul1_B          192 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV  271 (510)
T ss_dssp             HHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHH
Confidence            9998654     35678899999999987654444455567899999999999999999999999999988777778888


Q ss_pred             hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-Ccch
Q 008940          162 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNV  239 (548)
Q Consensus       162 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~  239 (548)
                      +.|+++.|+.++.++++.++..++++|+|++...+. ...+.+.|+++.|..++.++++.++..++++|+|++.+ +...
T Consensus       272 ~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~  351 (510)
T 3ul1_B          272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI  351 (510)
T ss_dssp             TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHH
Confidence            999999999999999999999999999999876654 56778899999999999999999999999999999874 5566


Q ss_pred             HHHHHhcCcccccccchh----hhhhhHHHH------HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC
Q 008940          240 ADFIRVGGVQKLQDGEFI----VQATKDCVA------KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP  309 (548)
Q Consensus       240 ~~~~~~g~i~~L~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~  309 (548)
                      ..+.+.|+++.|+.....    ......+.-      ...+++..+.+.|+++.|+.+|++.++.++..++++|.++...
T Consensus       352 ~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  431 (510)
T 3ul1_B          352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  431 (510)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            777788999887663322    221111111      1234556678899999999999999999999999999998641


Q ss_pred             -----C--ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          310 -----D--DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       310 -----~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                           .  ..+..+.+.||++.|..|..+++.++...|...|-+...
T Consensus       432 ~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          432 AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             HHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             hHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence                 1  123567788999999999999999999999888877654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=4.4e-31  Score=254.44  Aligned_cols=268  Identities=19%  Similarity=0.219  Sum_probs=233.6

Q ss_pred             CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-----------CChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           51 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      ....+..|+++|.+++. ++++|..+.+.|+++.|+.+|..           .+++++..|+++|.+|+.+++..+..+.
T Consensus        45 ~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34566789999999997 69999999999999999999952           2467999999999999988887877776


Q ss_pred             hc-CChHHHHHhhhcCChHHHHHHHHHHHHhhcC-CchhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhc-CC
Q 008940          120 AA-GALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-DM  195 (548)
Q Consensus       120 ~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~  195 (548)
                      .. |+||.|+++|.++++++++.|+++|.||+.. ++.++..+.+.|+++.|+.+| +++++.+++.++.+|+||+. .+
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            54 5599999999999999999999999999875 567889999999999999974 66788999999999999998 44


Q ss_pred             cchhhhH-hcCChHHHHHhhcCCCh----hHHHHHHHHHHhccc----CCcchHHHHHhcCcccccccchhhhhhhHHHH
Q 008940          196 HNQAGIA-HNGGLVPLLKLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVA  266 (548)
Q Consensus       196 ~~~~~~~-~~~~l~~L~~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~  266 (548)
                      +++..+. ..|+++.|+.+|.++++    ++++.++++|.+|+.    +++++..+                        
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i------------------------  259 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL------------------------  259 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH------------------------
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHH------------------------
Confidence            6677777 78999999999987654    489999999999985    55555444                        


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940          267 KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF  345 (548)
Q Consensus       267 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  345 (548)
                               .+.|+++.|+.+|.+++..++..|+++|.|++. ++++++.+.+.|+++.|++++.++++.+++.|+++|.
T Consensus       260 ---------~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~  330 (354)
T 3nmw_A          260 ---------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR  330 (354)
T ss_dssp             ---------HTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             ---------HHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                     445588999999999999999999999999995 5678889999999999999999999999999999999


Q ss_pred             HHhhhcc
Q 008940          346 KLANKAT  352 (548)
Q Consensus       346 ~l~~~~~  352 (548)
                      ||+.+..
T Consensus       331 nL~~~~~  337 (354)
T 3nmw_A          331 NLMANRP  337 (354)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCH
Confidence            9998643

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.97  E-value=1e-30  Score=242.61  Aligned_cols=161  Identities=21%  Similarity=0.335  Sum_probs=142.9

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCC--CCCCCceecCCCCHHHHHHHHHHHhcCccccch
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL  448 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~  448 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++.  |+....|.++++++++|+.+++|+|||++.++.
T Consensus        22 l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~  101 (256)
T 3hve_A           22 LSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE  101 (256)
T ss_dssp             HHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-
T ss_pred             HHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccH
Confidence            466789999999999999999999999999999999999999887  677789999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHH
Q 008940          449 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP  528 (548)
Q Consensus       449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~  528 (548)
                      +++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|+++.|.+.|.+||.+||.++.++++|.+|+.+.+.
T Consensus       102 ~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~  181 (256)
T 3hve_A          102 DTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLK  181 (256)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHH
T ss_pred             hHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999777655


Q ss_pred             HHH
Q 008940          529 EIH  531 (548)
Q Consensus       529 ~~~  531 (548)
                      +++
T Consensus       182 ~lL  184 (256)
T 3hve_A          182 EVI  184 (256)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.97  E-value=1e-29  Score=263.21  Aligned_cols=345  Identities=19%  Similarity=0.192  Sum_probs=289.9

Q ss_pred             hhhHHHHHHHHHHHHHhhh-ChhhHHHHHhcCCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            8 AVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ..++++..|+..|.++... +......+.+.|+++.|+++|+++ ++.++..|+++|.+++.++++.+..+.+.|+++.|
T Consensus        99 ~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L  178 (530)
T 1wa5_B           99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF  178 (530)
T ss_dssp             SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence            3578899999999999643 234445677889999999999997 89999999999999999878899999999999999


Q ss_pred             HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                      +.+|.++++.++..|+++|++++.+.+..+..+...|+++.|+.++.+.++.++..++|+|.+++.+...........++
T Consensus       179 v~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~  258 (530)
T 1wa5_B          179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA  258 (530)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhH
Confidence            99999999999999999999999988889999999999999999999988999999999999999765333345556899


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHHH
Q 008940          166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFI  243 (548)
Q Consensus       166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~  243 (548)
                      ++.|+.++.++++.++..++++|++++...+ ....+.+.|+++.|+.++.++++.++..++++|++++.. +.....+.
T Consensus       259 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  338 (530)
T 1wa5_B          259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI  338 (530)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999997654 356677789999999999999999999999999999875 44556667


Q ss_pred             HhcCcccccccchhhhh-hhHHHHHH--------HHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--C--
Q 008940          244 RVGGVQKLQDGEFIVQA-TKDCVAKT--------LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--D--  310 (548)
Q Consensus       244 ~~g~i~~L~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~--  310 (548)
                      +.|+++.|+........ .......+        ...++.+.+.++++.|+.+|.++++.++..|+++|++++..  +  
T Consensus       339 ~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  418 (530)
T 1wa5_B          339 NAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP  418 (530)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             HcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcH
Confidence            78888877653322111 11111112        23445566789999999999999999999999999999763  3  


Q ss_pred             ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          311 DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       311 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      +..+.+.+.|+++.|+.++.++++.++..++++|.++.....
T Consensus       419 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~  460 (530)
T 1wa5_B          419 DIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE  460 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            455677789999999999999999999999999999987643

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=5.7e-30  Score=258.55  Aligned_cols=304  Identities=20%  Similarity=0.252  Sum_probs=245.2

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      .++.|+++|++++++++..|+.+|.+++.+++.++..+.+.|+++.|+++|++++++++..|+++|++|+.++++++..+
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            57899999999999999999999999998777788899999999999999999999999999999999999889999999


Q ss_pred             HhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh--------CC--------CCHHHH
Q 008940          119 LAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--------QS--------PDVQLR  181 (548)
Q Consensus       119 ~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll--------~~--------~~~~v~  181 (548)
                      ++.|++|.|+++|. ++++++++.++|+|+|++.+ +.++..+++ |++|.|+.++        .+        .++.+.
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            99999999999999 78899999999999999977 788888888 9999999999        32        245677


Q ss_pred             HHHHHHHHHhhcCCcchhhhHhc-CChHHHHHhhcC------CChhHHHHHHHHHHhcccCCc-----chHHHHHhcCcc
Q 008940          182 EMSAFALGRLAQDMHNQAGIAHN-GGLVPLLKLLDS------KNGSLQHNAAFALYGLADNED-----NVADFIRVGGVQ  249 (548)
Q Consensus       182 ~~a~~~L~~l~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~g~i~  249 (548)
                      ..|+++|+||+.+++++..+.+. |+++.|+.++.+      .+..+.+.++.+|.+++...+     ....+ ... +.
T Consensus       161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~-~~~-~~  238 (457)
T 1xm9_A          161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL-EYN-AR  238 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH-HHT-C-
T ss_pred             HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc-ccc-cc
Confidence            79999999999887778888887 999999999986      456788899999999974311     11110 000 00


Q ss_pred             cccccchhhhhhhHHHHH-------------------HHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCC
Q 008940          250 KLQDGEFIVQATKDCVAK-------------------TLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSP  309 (548)
Q Consensus       250 ~L~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~  309 (548)
                          ..+.......|...                   ..+..+.+++.++++.|+.+|.+ +++.+++.|+|+|.|++.+
T Consensus       239 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~  314 (457)
T 1xm9_A          239 ----NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS  314 (457)
T ss_dssp             -------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred             ----cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence                00000000011100                   01123456788899999999988 5689999999999999976


Q ss_pred             Ccc------ceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          310 DDQ------RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       310 ~~~------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      ...      +..+.+.|++|.|+++|.+++.++++.|+++|.|++.+
T Consensus       315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence            532      33455789999999999999999999999999999875

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.97  E-value=2.6e-30  Score=225.16  Aligned_cols=150  Identities=33%  Similarity=0.490  Sum_probs=137.9

Q ss_pred             cchHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccch
Q 008940          369 YLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL  448 (548)
Q Consensus       369 ~~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~  448 (548)
                      .....++.++.++|+++.++|+.|+|||.||+++|+||++||.+++.|+.+..|.++++++++|+.+|+|+|||+++++.
T Consensus        23 ~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~  102 (172)
T 3htm_A           23 DELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD  102 (172)
T ss_dssp             HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGG
T ss_pred             HHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcch
Q 008940          449 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG  518 (548)
Q Consensus       449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~  518 (548)
                      +++.+++.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|+++.|++.|.+||.+||.++.++++
T Consensus       103 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~  172 (172)
T 3htm_A          103 KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG  172 (172)
T ss_dssp             GTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999988764

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.97  E-value=3.1e-30  Score=242.55  Aligned_cols=160  Identities=23%  Similarity=0.403  Sum_probs=144.2

Q ss_pred             hHhhhcCCCCccEEEEeC---CeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecC------CCCHHHHHHHHHHHhc
Q 008940          371 GDQFVNNATLSDVTFLVE---GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP------NIRWEVFELMMRFIYT  441 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~---~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~------~~~~~~~~~~l~~~Yt  441 (548)
                      .+.++.++.+|||++.++   |+.|+|||.||+++|+||++||.++++|+.+..|.++      ++++++|+.+++|+||
T Consensus        23 l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Yt  102 (279)
T 3i3n_A           23 QNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYT  102 (279)
T ss_dssp             HHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCc
Confidence            466889999999999998   8999999999999999999999999999999999998      8999999999999999


Q ss_pred             CccccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHh
Q 008940          442 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSN  521 (548)
Q Consensus       442 ~~~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~  521 (548)
                      |++.++.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|+++.|.+.|..||.+||.++.++++|.+
T Consensus       103 g~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~  182 (279)
T 3i3n_A          103 GRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYT  182 (279)
T ss_dssp             SEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGG
T ss_pred             CCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhcHHHH
Q 008940          522 LIQRIIPEI  530 (548)
Q Consensus       522 l~~~~~~~~  530 (548)
                      |+.+.+.++
T Consensus       183 L~~~~l~~l  191 (279)
T 3i3n_A          183 LPFHLIRDW  191 (279)
T ss_dssp             SCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            977654443

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.96  E-value=5.7e-29  Score=252.68  Aligned_cols=309  Identities=21%  Similarity=0.265  Sum_probs=270.5

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      .++++..|+++|.+++..+++....+.+.|+++.|+++++++++.+|..|+++|++++..+++.+..+.+.|+++.|+.+
T Consensus        78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~  157 (450)
T 2jdq_A           78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL  157 (450)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence            57899999999999998777888888889999999999999999999999999999998777889999999999999999


Q ss_pred             hcc-CChHHHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           89 LRS-EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        89 l~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      +.+ ++..++..++++|++++.+. +..+..+. .++++.|+.++.+.++.++..++|+|.+++...+.....+.+.|++
T Consensus       158 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  236 (450)
T 2jdq_A          158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC  236 (450)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTH
T ss_pred             hcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcH
Confidence            995 78999999999999999764 33222222 7899999999999999999999999999998777777788889999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC-cchHHHHH
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIR  244 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~  244 (548)
                      +.|+.++.++++.++..++++|++++...+. ...+.+.|+++.|+.++.++++.++..++++|++++... +....   
T Consensus       237 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~---  313 (450)
T 2jdq_A          237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQT---  313 (450)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH---
T ss_pred             HHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH---
Confidence            9999999999999999999999999987654 345677799999999999999999999999999998643 22222   


Q ss_pred             hcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--CccceeeecCCch
Q 008940          245 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGL  322 (548)
Q Consensus       245 ~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~i  322 (548)
                                                    +.+.++++.++.++.++++.+|..|+++|++++..  ++..+.+.+.|++
T Consensus       314 ------------------------------~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i  363 (450)
T 2jdq_A          314 ------------------------------VIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI  363 (450)
T ss_dssp             ------------------------------HHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred             ------------------------------HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence                                          34456899999999999999999999999999863  4455667788999


Q ss_pred             HHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          323 ELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       323 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      +.|++++.+++++++..++++|.+++...
T Consensus       364 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  392 (450)
T 2jdq_A          364 KPLCDLLTVMDSKIVQVALNGLENILRLG  392 (450)
T ss_dssp             HHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999998753

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.96  E-value=1e-28  Score=255.68  Aligned_cols=342  Identities=16%  Similarity=0.194  Sum_probs=290.3

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      ++.++..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..|+++|++++..++..+..+...|+++.|+.+
T Consensus       144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l  223 (530)
T 1wa5_B          144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL  223 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence            67899999999999998788888889999999999999999999999999999999998778899999999999999999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                      +.+++..++..++++|++|+.+...........++++.|+.++.+.++.++..++++|.+++...+.....+.+.|+++.
T Consensus       224 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~  303 (530)
T 1wa5_B          224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR  303 (530)
T ss_dssp             GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred             hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHH
Confidence            99999999999999999999765222344556789999999999999999999999999999887777788888999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHHHHhc
Q 008940          169 LIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVG  246 (548)
Q Consensus       169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~g  246 (548)
                      |+.++.++++.++..++++|++++...+. ...+.+.|+++.|+.+|.++++.++..|+++|++++.. ++....+.+.|
T Consensus       304 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~  383 (530)
T 1wa5_B          304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN  383 (530)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence            99999999999999999999999976544 45567789999999999999999999999999999864 45566777889


Q ss_pred             Ccccccccchhhhhh-hHHHHHHH-----------HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc---
Q 008940          247 GVQKLQDGEFIVQAT-KDCVAKTL-----------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---  311 (548)
Q Consensus       247 ~i~~L~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~---  311 (548)
                      +++.|+......... ......++           +....+.+.++++.|+.++.+.++.++..++++|.+++...+   
T Consensus       384 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~  463 (530)
T 1wa5_B          384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK  463 (530)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            999887643221111 11111111           344455677899999999999999999999999999975322   


Q ss_pred             ---------cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          312 ---------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       312 ---------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                               ....+.+.|+++.|..++.+++++++..|..+|.++...
T Consensus       464 ~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          464 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             HHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             hcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence                     235677889999999999999999999999999988764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=4e-29  Score=253.04  Aligned_cols=305  Identities=17%  Similarity=0.225  Sum_probs=245.1

Q ss_pred             HhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcC-Chh
Q 008940           35 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPN  113 (548)
Q Consensus        35 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~-~~~  113 (548)
                      .+.+.++.|+++|.++++.++..|+++|.+++.++++++..+.+.|+++.|+.+|.+++.++++.|+++|+||+.+ +++
T Consensus        45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            3568899999999999999999999999999988899999999999999999999999999999999999999985 688


Q ss_pred             HHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC------------------
Q 008940          114 IKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ------------------  174 (548)
Q Consensus       114 ~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~------------------  174 (548)
                      ++..+.+.|+||.|+++|.+ .+.++++.++++|++|+. ++.++..+++ ++++.|+.++.                  
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence            99999999999999999997 568899999999999986 5788888885 56999999871                  


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCC-hHHHHHhhcC------CChhHHHHHHHHHHhcccCCcc----hHHH
Q 008940          175 SPDVQLREMSAFALGRLAQDMHN-QAGIAHNGG-LVPLLKLLDS------KNGSLQHNAAFALYGLADNEDN----VADF  242 (548)
Q Consensus       175 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~-l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~----~~~~  242 (548)
                      .+++.+++.|+++|.||+...+. +..+++.++ ++.|+.++++      .+...+++|+++|.||+...+.    ...+
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~  282 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY  282 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred             cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence            23679999999999999987754 888887666 4679999874      4567899999999999865210    0001


Q ss_pred             HHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCC-----ccceee
Q 008940          243 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPD-----DQRTIF  316 (548)
Q Consensus       243 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~-----~~~~~~  316 (548)
                      .+..  +   ..  ...   . .....+.++.+++.++++.|+.+|.. .++.++++|+++|.||+.+.     ..+..+
T Consensus       283 ~~~~--~---~~--~~~---~-~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v  351 (584)
T 3l6x_A          283 QEAA--P---NV--ANN---T-GTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSAL  351 (584)
T ss_dssp             ------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred             hhhc--c---cc--ccc---c-cccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHH
Confidence            1000  0   00  000   0 00000112334566789999999975 67999999999999998754     234566


Q ss_pred             ecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          317 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       317 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      .+.++++.|++||.++++.++..|+++|.||+.+..
T Consensus       352 ~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~  387 (584)
T 3l6x_A          352 RQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR  387 (584)
T ss_dssp             TSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred             HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence            778999999999999999999999999999998654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.96  E-value=5.5e-29  Score=258.28  Aligned_cols=334  Identities=19%  Similarity=0.196  Sum_probs=278.6

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      .++++..|+.+|.+++. +++++..+.+.|+++.|+++++++++.++..|+++|.+++..++..+..+.+.|+++.|+.+
T Consensus        73 ~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  151 (529)
T 1jdh_A           73 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL  151 (529)
T ss_dssp             CHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence            56899999999999995 57799999999999999999999999999999999999998767888889999999999999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChH-HHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE-SQREAALLLGQFAATDSDCKVHIVQRGAVR  167 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  167 (548)
                      +.+++++++..++.+|.+++.++++.+..+.+.|+++.+++++.+.+++ .+..++.+|.+++. ++.++..+.+.|+++
T Consensus       152 l~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~  230 (529)
T 1jdh_A          152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ  230 (529)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHH
Confidence            9999999999999999999998899999999999999999999887654 55667889999985 577888899999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC-cchHHHHHhc
Q 008940          168 PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVG  246 (548)
Q Consensus       168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~g  246 (548)
                      .|+.++.++++.++..++++|.+++.......  ...++++.|++++.+++++++..++++|++++.+. +.+..+.+.|
T Consensus       231 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~  308 (529)
T 1jdh_A          231 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG  308 (529)
T ss_dssp             HHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence            99999999999999999999999997764432  23467899999999999999999999999998864 5888888999


Q ss_pred             CcccccccchhhhhhhHH---HHHHHH-----------HHHHhhhhhhhHHHHHHHHhhh-hhhhhhHHHHhhhccCCCc
Q 008940          247 GVQKLQDGEFIVQATKDC---VAKTLK-----------RLEEKIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCSPDD  311 (548)
Q Consensus       247 ~i~~L~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~L~~ll~~~~-~~~~~~a~~aL~~l~~~~~  311 (548)
                      +++.|++...........   ...++.           ....+.+.++++.|+.+|.+++ +.++..++++|+|++.++.
T Consensus       309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~  388 (529)
T 1jdh_A          309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  388 (529)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence            999887644321111111   112222           1235567789999999999876 5999999999999999888


Q ss_pred             cceeeecCCchHHHHHhhcCCCCccchhhHHHHHH
Q 008940          312 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK  346 (548)
Q Consensus       312 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  346 (548)
                      .+..+.+.|+++.|++++.++++++|..|+|++.|
T Consensus       389 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n  423 (529)
T 1jdh_A          389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ  423 (529)
T ss_dssp             GHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence            88888999999999999999899999999999888

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.96  E-value=1.9e-28  Score=248.84  Aligned_cols=309  Identities=19%  Similarity=0.233  Sum_probs=267.1

Q ss_pred             hhhHHHHHHHHHHHHHhh--hChhhHHHHHhc-CCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChH
Q 008940            8 AVNSVIRRAADAITNLAH--ENSSIKTRVRME-GGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALP   83 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~-g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   83 (548)
                      ..++++..|+..|..+..  .++..+. +.+. |+++.|+++|+++ ++.+|..|+++|.+++.+++++...+.+.|+++
T Consensus        32 ~~~~~r~~A~~~L~~l~~~~~~~~~~~-~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  110 (450)
T 2jdq_A           32 KSPEQQLSATQKFRKLLSKEPNPPIDE-VISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVP  110 (450)
T ss_dssp             SCHHHHHHHHHHHHHHHHSSSSCCHHH-HHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHH-HHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHH
Confidence            456889999999999863  3445444 5556 9999999999998 899999999999999987788888888999999


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCC-chhHHHHH
Q 008940           84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATD-SDCKVHIV  161 (548)
Q Consensus        84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~  161 (548)
                      .|+.++.++++++++.|+++|++++.+++..+..+.+.|+++.++.++.+ .+.+++..++++|++++.+. +.......
T Consensus       111 ~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  190 (450)
T 2jdq_A          111 IFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV  190 (450)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            99999999999999999999999999988899999999999999999996 67999999999999999764 33322233


Q ss_pred             hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchH
Q 008940          162 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA  240 (548)
Q Consensus       162 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  240 (548)
                       .++++.|+.++.++++.++..++++|.+++... +....+...|+++.|+.++.++++.++..++++|++++...+...
T Consensus       191 -~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  269 (450)
T 2jdq_A          191 -SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT  269 (450)
T ss_dssp             -GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             -HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHH
Confidence             789999999999999999999999999999865 345667788999999999999999999999999999997654322


Q ss_pred             HHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeeecC
Q 008940          241 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDG  319 (548)
Q Consensus       241 ~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~  319 (548)
                      .                                .+.+.++++.|+.++.++++.+|..|+++|++++.+. ...+.+.+.
T Consensus       270 ~--------------------------------~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~  317 (450)
T 2jdq_A          270 Q--------------------------------VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDA  317 (450)
T ss_dssp             H--------------------------------HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             H--------------------------------HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            1                                2344568899999999999999999999999999754 455667778


Q ss_pred             CchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          320 GGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       320 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      |+++.|++++.++++.+|..|+++|.+++.+
T Consensus       318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          318 NIFPALISILQTAEFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             THHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999875

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=1.6e-28  Score=254.32  Aligned_cols=340  Identities=18%  Similarity=0.186  Sum_probs=289.5

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML   89 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll   89 (548)
                      +.++..|+++|.+++.++++.+..+.+.|+++.|+.+|+++++.++..|+++|++++..++..+..+...|+++.|+.++
T Consensus       132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL  211 (528)
T 4b8j_A          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL  211 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence            78999999999999988899999999999999999999999999999999999999987788899999999999999999


Q ss_pred             -ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           90 -RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        90 -~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                       .+.+..++..++++|++|+...+.. ......|+++.|+.++.+.+++++..++++|.+++...+.....+.+.|+++.
T Consensus       212 ~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~  290 (528)
T 4b8j_A          212 NEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (528)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence             5778999999999999999875443 33445899999999999999999999999999999877766678889999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCC-ChhHHHHHHHHHHhcccC-CcchHHHHHh
Q 008940          169 LIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSK-NGSLQHNAAFALYGLADN-EDNVADFIRV  245 (548)
Q Consensus       169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~-~~~~~~~~~~  245 (548)
                      |+.+|.++++.++..|+++|++++...+. ...+.+.|+++.|+.+|.++ ++.++..|+++|++++.. ++....+.+.
T Consensus       291 Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~  370 (528)
T 4b8j_A          291 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINA  370 (528)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Confidence            99999999999999999999999986544 55677889999999999998 999999999999999874 4456677788


Q ss_pred             cCcccccccchhhhhh-hHHHHHH---------HHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc----
Q 008940          246 GGVQKLQDGEFIVQAT-KDCVAKT---------LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD----  311 (548)
Q Consensus       246 g~i~~L~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~----  311 (548)
                      |+++.|+......... ......+         .+....+.+.++++.|+.++.+.++.++..++++|.+++...+    
T Consensus       371 ~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~  450 (528)
T 4b8j_A          371 GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKT  450 (528)
T ss_dssp             TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999887643322111 1111111         3444555678999999999999999999999999999975321    


Q ss_pred             --------cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          312 --------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       312 --------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                              ....+.+.|+++.|..+..+.+++++..|...+.++...
T Consensus       451 ~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          451 LAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             HHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             cccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence                    356778889999999999999999999999999888764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.96  E-value=3.8e-28  Score=251.94  Aligned_cols=340  Identities=21%  Similarity=0.233  Sum_probs=283.3

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      ..++++..|+++|.+++..++..+..+.+.|+++.|++++++++++++..++.+|.+++.++++++..+.+.|+++.|+.
T Consensus       113 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~  192 (529)
T 1jdh_A          113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN  192 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            34789999999999999887888888889999999999999999999999999999999888999999999999999999


Q ss_pred             HhccCC-hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh----------------------------------
Q 008940           88 MLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----------------------------------  132 (548)
Q Consensus        88 ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----------------------------------  132 (548)
                      ++++++ ...+..++.+|++++.. ++.+..+.+.|+++.|+.++.                                  
T Consensus       193 ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L  271 (529)
T 1jdh_A          193 IMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL  271 (529)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHH
T ss_pred             HHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHH
Confidence            998654 45667788999999864 666777777777766665554                                  


Q ss_pred             -----cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCc----chhhh
Q 008940          133 -----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMH----NQAGI  201 (548)
Q Consensus       133 -----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~----~~~~~  201 (548)
                           +.+++++..++++|++++..++..+..+.+.|+++.|+.++.+  +++.++..++++|+|++...+    .+..+
T Consensus       272 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i  351 (529)
T 1jdh_A          272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV  351 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence                 4566777888888888887777788889999999999999975  347999999999999997643    25678


Q ss_pred             HhcCChHHHHHhhcCCC-hhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhh----hh---------------
Q 008940          202 AHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ----AT---------------  261 (548)
Q Consensus       202 ~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~----~~---------------  261 (548)
                      .+.|+++.|++++.+++ +.++..++++|+|++.++..+..+.+.|+++.|++......    ..               
T Consensus       352 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~  431 (529)
T 1jdh_A          352 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR  431 (529)
T ss_dssp             HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC
T ss_pred             HHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcccc
Confidence            88999999999999876 58999999999999998888888999999998766322111    00               


Q ss_pred             -hH---HHHHHH-------HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhc
Q 008940          262 -KD---CVAKTL-------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG  330 (548)
Q Consensus       262 -~~---~~~~~~-------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~  330 (548)
                       ..   ....++       ++...+.+.++++.|+.++.++++.++..++++|.+++..++.+..+.+.|+++.|.+++.
T Consensus       432 ~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~  511 (529)
T 1jdh_A          432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH  511 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhc
Confidence             00   111111       2234467788999999999999999999999999999987778888899999999999999


Q ss_pred             CCCCccchhhHHHHHHHh
Q 008940          331 STNPKQQLDGAVALFKLA  348 (548)
Q Consensus       331 ~~~~~v~~~a~~~L~~l~  348 (548)
                      +++++++..|.++|.+|+
T Consensus       512 ~~~~~v~~~a~~aL~~l~  529 (529)
T 1jdh_A          512 SRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             CSSHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            999999999999999873

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.96  E-value=5.7e-28  Score=255.67  Aligned_cols=343  Identities=21%  Similarity=0.233  Sum_probs=287.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      ..+.++..|+.+|.+++..++..+..+.+.|+++.|+++|+++++.++..++.+|.+++.++++++..+.+.|+++.|+.
T Consensus       110 ~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~  189 (644)
T 2z6h_A          110 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN  189 (644)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHH
Confidence            35789999999999999877788888889999999999999999999999999999999878999999999999999999


Q ss_pred             HhccCC-hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh----------------------------------
Q 008940           88 MLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----------------------------------  132 (548)
Q Consensus        88 ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----------------------------------  132 (548)
                      ++++.+ ..++..++.+|++++. ++..+..+.+.|+++.|+.++.                                  
T Consensus       190 lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~L  268 (644)
T 2z6h_A          190 IMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL  268 (644)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHH
Confidence            998664 6778899999999985 4677888888887777766554                                  


Q ss_pred             -----cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCc----chhhh
Q 008940          133 -----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMH----NQAGI  201 (548)
Q Consensus       133 -----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~----~~~~~  201 (548)
                           +.+++++..++++|.+++..++.++..+.+.|+++.|+.++.+.  .+.++..++++|++++....    .+..+
T Consensus       269 v~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v  348 (644)
T 2z6h_A          269 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV  348 (644)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence                 45667778888888888877777888889999999999999863  37999999999999996533    24557


Q ss_pred             HhcCChHHHHHhhcCCC-hhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhh----h----------------
Q 008940          202 AHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ----A----------------  260 (548)
Q Consensus       202 ~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~----~----------------  260 (548)
                      .+.|+++.|+++|.+.+ +.++..++++|+|++.++.++..+.+.|+++.|+.......    .                
T Consensus       349 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~  428 (644)
T 2z6h_A          349 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR  428 (644)
T ss_dssp             HHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSC
T ss_pred             HHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccccc
Confidence            78899999999999875 68999999999999998888888999999998876332211    0                


Q ss_pred             hhH---HHHHHH-------HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhc
Q 008940          261 TKD---CVAKTL-------KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG  330 (548)
Q Consensus       261 ~~~---~~~~~~-------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~  330 (548)
                      ...   ....++       .+...+.+.++++.|+.++.+.++.++..|+++|.+++..++.+..+.+.|+++.|..++.
T Consensus       429 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~  508 (644)
T 2z6h_A          429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH  508 (644)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHc
Confidence            000   111122       2223556789999999999999999999999999999988778888899999999999999


Q ss_pred             CCCCccchhhHHHHHHHhhhc
Q 008940          331 STNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       331 ~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ++++++|..|+++|.+++.+.
T Consensus       509 ~~~~~vr~~A~~aL~~l~~~~  529 (644)
T 2z6h_A          509 SRNEGVATYAAAVLFRMSEDK  529 (644)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTS
T ss_pred             CCCHHHHHHHHHHHHHHhccC
Confidence            999999999999999998864

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.96  E-value=1.2e-27  Score=256.83  Aligned_cols=342  Identities=20%  Similarity=0.199  Sum_probs=279.4

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      .+++++.|+.+|.+++. +++++..+.+.|+++.|+++|+++++.++..|+++|.+++..++..+..+.+.|+++.|+.+
T Consensus       206 d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l  284 (780)
T 2z6g_A          206 DVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL  284 (780)
T ss_dssp             CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence            57899999999999994 57778889999999999999999999999999999999998777888888899999999999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHH------------------------------------------HHHHhcCChHH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIK------------------------------------------KEVLAAGALQP  126 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~------------------------------------------~~~~~~g~i~~  126 (548)
                      +.+++..++..++.+|.+++..+++.+                                          ..+++.|+++.
T Consensus       285 L~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~  364 (780)
T 2z6g_A          285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA  364 (780)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHH
Confidence            999888888888888887776543333                                          33334444444


Q ss_pred             HHH---------------------------------------hhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940          127 VIG---------------------------------------LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR  167 (548)
Q Consensus       127 L~~---------------------------------------ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  167 (548)
                      |+.                                       ++.+.+++++..|+++|++++..++..+..+.+.|+++
T Consensus       365 Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~  444 (780)
T 2z6g_A          365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE  444 (780)
T ss_dssp             HGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence            433                                       34445667788888888898887778888888999999


Q ss_pred             HHHHhhCC-CC-HHHHHHHHHHHHHhhcCCcc----hhhhHhcCChHHHHHhhcCCCh-hHHHHHHHHHHhcccCCcchH
Q 008940          168 PLIEMLQS-PD-VQLREMSAFALGRLAQDMHN----QAGIAHNGGLVPLLKLLDSKNG-SLQHNAAFALYGLADNEDNVA  240 (548)
Q Consensus       168 ~L~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~  240 (548)
                      .|+.+|.+ ++ +.++..|+++|++|+.....    +..+...|+++.|+++|.+++. .++..++++|+|++.++.++.
T Consensus       445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  524 (780)
T 2z6g_A          445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA  524 (780)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHH
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHH
Confidence            99999986 33 48999999999999865432    4577888999999999998774 999999999999999888888


Q ss_pred             HHHHhcCcccccccchhhh----h-------------------hhHHHHHHHHH-------HHHhhhhhhhHHHHHHHHh
Q 008940          241 DFIRVGGVQKLQDGEFIVQ----A-------------------TKDCVAKTLKR-------LEEKIHGRVLNHLLYLMRV  290 (548)
Q Consensus       241 ~~~~~g~i~~L~~~~~~~~----~-------------------~~~~~~~~~~~-------~~~~~~~~~~~~L~~ll~~  290 (548)
                      .+.+.|+++.|+.......    .                   .......++.+       ...+.+.++++.|+.++.+
T Consensus       525 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~  604 (780)
T 2z6g_A          525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYS  604 (780)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGC
T ss_pred             HHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcC
Confidence            8889999888766332211    0                   00111222222       2345678999999999999


Q ss_pred             hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          291 AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       291 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      +++.++..|+.+|.+++..++.+..+.+.|+++.|.+++.++++.+|..|+++|.+++.+.
T Consensus       605 ~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~  665 (780)
T 2z6g_A          605 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK  665 (780)
T ss_dssp             SCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999988888888999999999999999999999999999999999864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.96  E-value=7.3e-28  Score=254.85  Aligned_cols=334  Identities=19%  Similarity=0.194  Sum_probs=279.4

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      .++++..|+.+|.+++. +++++..+.+.|+++.|+++|+++++.++..|+++|.+++..++..+..+.+.|+++.|+.+
T Consensus        70 ~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l  148 (644)
T 2z6h_A           70 DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL  148 (644)
T ss_dssp             CHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence            57899999999999995 56789999999999999999999999999999999999998767888888899999999999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-hHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVR  167 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  167 (548)
                      |.++++.++..++.+|.+++..+++.+..+.+.|+++.|++++.+.+ ..++..++.+|.+++. ++.++..+++.|+++
T Consensus       149 L~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~  227 (644)
T 2z6h_A          149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ  227 (644)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHH
T ss_pred             HCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHH
Confidence            99999999999999999999888899999999999999999998866 5677889999999985 578889999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-CcchHHHHHhc
Q 008940          168 PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVG  246 (548)
Q Consensus       168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~g  246 (548)
                      .|+.++.++++.++..++++|.+++.......  ...++++.|+.++.+.+++++..++++|++|+.+ ++++..+.+.|
T Consensus       228 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g  305 (644)
T 2z6h_A          228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG  305 (644)
T ss_dssp             HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCC--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcchhhh--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999999999997654322  2236789999999999999999999999999885 46778888999


Q ss_pred             Ccccccccchhhhh---hhHHHHHHHHHH-----------HHhhhhhhhHHHHHHHHhhh-hhhhhhHHHHhhhccCCCc
Q 008940          247 GVQKLQDGEFIVQA---TKDCVAKTLKRL-----------EEKIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCSPDD  311 (548)
Q Consensus       247 ~i~~L~~~~~~~~~---~~~~~~~~~~~~-----------~~~~~~~~~~~L~~ll~~~~-~~~~~~a~~aL~~l~~~~~  311 (548)
                      +++.|+........   ...-...++.++           ..+.+.++++.|+.+|.+.+ +.++..|+++|+|++.++.
T Consensus       306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~  385 (644)
T 2z6h_A          306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  385 (644)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence            99988764432211   111112222222           22556789999999999864 6999999999999999888


Q ss_pred             cceeeecCCchHHHHHhhcCCCCccchhhHHHHHH
Q 008940          312 QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK  346 (548)
Q Consensus       312 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  346 (548)
                      .+..+.+.|+++.|++++.+++.++|+.|+|++.+
T Consensus       386 ~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n  420 (644)
T 2z6h_A          386 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ  420 (644)
T ss_dssp             GHHHHHHTTHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHcCCHHHHHHHHhccchhhhhHhhhcccc
Confidence            88888999999999999998888888888887665

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=1.4e-26  Score=215.63  Aligned_cols=241  Identities=28%  Similarity=0.368  Sum_probs=220.3

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      |+++.|+++|++++++++..|+++|.+++..+++++..+.+.|+++.|++++.+++++++..++++|++++.++++.+..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            67899999999999999999999999999877789999999999999999999999999999999999999988999999


Q ss_pred             HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940          118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                      +.+.|+++.++.++.+++++++..++++|.+++..++..+..+.+.|+++.|+.+++++++.++..++++|++++...+.
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999988889999999999999999999999999999999999999986654


Q ss_pred             -hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc-chHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHh
Q 008940          198 -QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK  275 (548)
Q Consensus       198 -~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  275 (548)
                       +..+.+.|+++.|+.++.++++.++..++++|++++...+ ....                                 +
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~---------------------------------l  208 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA---------------------------------I  208 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH---------------------------------H
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH---------------------------------H
Confidence             4678889999999999999999999999999999997433 3333                                 3


Q ss_pred             hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc
Q 008940          276 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD  311 (548)
Q Consensus       276 ~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~  311 (548)
                      .+.|+++.|+.+++++++.++..|+++|.+++....
T Consensus       209 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          209 VDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             HHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence            455688999999999999999999999999986544

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.95  E-value=3.1e-27  Score=226.14  Aligned_cols=148  Identities=34%  Similarity=0.509  Sum_probs=131.8

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI  450 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~  450 (548)
                      ...++.++.++|+++.++|+.|+|||.||+++||||++||.++++|+....|.++++++++|+.+|+|+|||+++++.++
T Consensus       165 l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~  244 (312)
T 3hqi_A          165 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKM  244 (312)
T ss_dssp             HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHH
T ss_pred             HHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcch
Q 008940          451 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG  518 (548)
Q Consensus       451 ~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~  518 (548)
                      +.+|+.+|++|+++.|+..|+++|.+.++.+||..++.+|+.|++..|++.|++||.+||.++.++++
T Consensus       245 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g  312 (312)
T 3hqi_A          245 ADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG  312 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988763

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=5e-26  Score=211.92  Aligned_cols=228  Identities=25%  Similarity=0.339  Sum_probs=209.1

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +.+++++..|+++|.++...+++.+..+.+.|+++.|+++|+++++.++..|+++|++++.++++++..+.+.|+++.|+
T Consensus        23 s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~  102 (252)
T 4db8_A           23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV  102 (252)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence            34578999999999776655777888899999999999999999999999999999999988899999999999999999


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      .+|+++++.++..|+++|++++.+.+.....+.+.|+++.|++++.++++.++..++++|++++..++.....+.+.|++
T Consensus       103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  182 (252)
T 4db8_A          103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL  182 (252)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             HHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCH
Confidence            99999999999999999999998766655889999999999999999999999999999999998888888888999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  234 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  234 (548)
                      +.|+.++.++++.++..++++|++++... ..+..+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       183 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          183 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999654 446678888999999999999999999999999999985

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=1e-25  Score=209.77  Aligned_cols=229  Identities=30%  Similarity=0.387  Sum_probs=214.7

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM   88 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      .++++..|+++|.+++..+++.+..+.+.|+++.|+++++++++.++..|+++|.+++.++++++..+.+.|+++.|+.+
T Consensus        15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l   94 (252)
T 4hxt_A           15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL   94 (252)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence            47899999999999998888899999999999999999999999999999999999998779999999999999999999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                      +.+++++++..++++|++++..+++.+..+.+.|+++.+++++.+++++++..++++|++++...+.....+.+.|+++.
T Consensus        95 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  174 (252)
T 4hxt_A           95 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV  174 (252)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHH
Confidence            99999999999999999999888999999999999999999999999999999999999999888888788999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCC-cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc
Q 008940          169 LIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED  237 (548)
Q Consensus       169 L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  237 (548)
                      |+.++.++++.++..++++|++++... ..+..+.+.|+++.|+++++++++.++..|+++|++++....
T Consensus       175 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          175 LVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999754 446678889999999999999999999999999999987554

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.94  E-value=9.8e-26  Score=242.11  Aligned_cols=340  Identities=20%  Similarity=0.212  Sum_probs=279.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhc-CCchHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ..+.+++.|+.+|.+++. +...+..+.+. |+++.|+++|+++ ++.++..|+.+|.+++. +++++..+.+.|+++.|
T Consensus       162 ~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~L  239 (780)
T 2z6g_A          162 EDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPAL  239 (780)
T ss_dssp             SCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHH
Confidence            457899999999999995 45566666644 8899999999865 89999999999999997 57888899999999999


Q ss_pred             HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                      +.+|+++++.++..|+++|.+|+.+.+..+..+.+.|+++.|+.++.+.+.+++..++.+|.+++..+++.+..+.+.|+
T Consensus       240 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~  319 (780)
T 2z6g_A          240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG  319 (780)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence            99999999999999999999999988888888889999999999999999999999999999999888889999999999


Q ss_pred             hHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHH
Q 008940          166 VRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR  244 (548)
Q Consensus       166 v~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  244 (548)
                      ++.|+.+++++++ ..+..++.+|++|+....++..+.+.|+++.|+.++.+.+..++..++++|.+++.......  ..
T Consensus       320 i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~--~~  397 (780)
T 2z6g_A          320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GM  397 (780)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS--CC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh--hh
Confidence            9999999998654 46678899999999988888899999999999999999999999999999999987543211  11


Q ss_pred             hcCcccccccchhhh-hhhHHHHHHH--------HHHHHhhhhhhhHHHHHHHHhh-h-hhhhhhHHHHhhhccCCCc--
Q 008940          245 VGGVQKLQDGEFIVQ-ATKDCVAKTL--------KRLEEKIHGRVLNHLLYLMRVA-E-KGVQRRVALALAHLCSPDD--  311 (548)
Q Consensus       245 ~g~i~~L~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~L~~ll~~~-~-~~~~~~a~~aL~~l~~~~~--  311 (548)
                      .++++.|+....... ....+...++        .+...+.+.++++.|+.+|.+. + ..++..|+++|++++....  
T Consensus       398 ~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~  477 (780)
T 2z6g_A          398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA  477 (780)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchH
Confidence            234444433211111 1111222222        3445566788999999999874 3 3899999999999986432  


Q ss_pred             --cceeeecCCchHHHHHhhcCCCC-ccchhhHHHHHHHhhhc
Q 008940          312 --QRTIFIDGGGLELLLGLLGSTNP-KQQLDGAVALFKLANKA  351 (548)
Q Consensus       312 --~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~  351 (548)
                        .+..+.+.++++.|++++.+++. .++..|+++|.|++...
T Consensus       478 ~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~  520 (780)
T 2z6g_A          478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP  520 (780)
T ss_dssp             HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred             HHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence              24567788999999999998876 89999999999998654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=7.8e-26  Score=210.60  Aligned_cols=238  Identities=24%  Similarity=0.357  Sum_probs=212.5

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      ...+.++++|++++++++..|+++|.++...+++++..+.+.|+++.|+++|.+++++++..|+++|++++.++++.+..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            45788999999999999999999998766656788889999999999999999999999999999999999988999999


Q ss_pred             HHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-
Q 008940          118 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-  196 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-  196 (548)
                      +.+.|+++.|+.++.+++++++..++++|.+++...+.....+.+.|+++.|+.+++++++.++..++++|++++...+ 
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            9999999999999999999999999999999987755544788999999999999999999999999999999998654 


Q ss_pred             chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC-cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHh
Q 008940          197 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK  275 (548)
Q Consensus       197 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~  275 (548)
                      ....+.+.|+++.|+.++.++++.++..++++|++++... +....+                                 
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~---------------------------------  218 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV---------------------------------  218 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHH---------------------------------
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHH---------------------------------
Confidence            4566788899999999999999999999999999998643 333333                                 


Q ss_pred             hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC
Q 008940          276 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS  308 (548)
Q Consensus       276 ~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~  308 (548)
                      .+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       219 ~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          219 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            345688889999999999999999999999975

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.94  E-value=2.8e-27  Score=199.64  Aligned_cols=132  Identities=36%  Similarity=0.520  Sum_probs=100.7

Q ss_pred             cchHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccch
Q 008940          369 YLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTL  448 (548)
Q Consensus       369 ~~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~  448 (548)
                      .....++.++.++|+++.++|+.|+|||.||+++|+||++||.+++.|+.+..|.++++++++|+.+++|+|||+++++.
T Consensus        14 ~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~   93 (145)
T 4eoz_A           14 DELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD   93 (145)
T ss_dssp             HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGG
T ss_pred             HHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcH
Confidence            34567889999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHHHHHHHcCcHHHHH
Q 008940          449 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRH  500 (548)
Q Consensus       449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~  500 (548)
                      +++.+++.+|++|+++.|++.|+++|.+.++.+||+.++.+|+.|+++.|++
T Consensus        94 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk~  145 (145)
T 4eoz_A           94 KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT  145 (145)
T ss_dssp             GTHHHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence            9999999999999999999999999999999999999999999999998864

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=4.6e-24  Score=192.65  Aligned_cols=199  Identities=26%  Similarity=0.372  Sum_probs=186.0

Q ss_pred             hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHH
Q 008940           36 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK  115 (548)
Q Consensus        36 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  115 (548)
                      ..|..+.|+.+|+++++.++..|+++|.+++.++++++..+.+.|+++.|+++|.+++++++..|+++|++++.+++..+
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            45788999999999999999999999999998789999999999999999999999999999999999999998889999


Q ss_pred             HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-
Q 008940          116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD-  194 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~-  194 (548)
                      ..+.+.|+++.|+.++.++++.++..++++|++++.+++.....+.+.|+++.|+.+++++++.++..++++|++++.. 
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999988888888889999999999999999999999999999999987 


Q ss_pred             CcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940          195 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  234 (548)
Q Consensus       195 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  234 (548)
                      .+.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus       170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            4557778888999999999999999999999999999975

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.91  E-value=2.4e-24  Score=171.56  Aligned_cols=104  Identities=29%  Similarity=0.551  Sum_probs=94.2

Q ss_pred             hhcCCCCccEEEEeCC----eEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchH
Q 008940          374 FVNNATLSDVTFLVEG----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD  449 (548)
Q Consensus       374 ~~~~~~~~Dv~~~~~~----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~  449 (548)
                      ++.++.+||+++.+++    +.|+|||.||+++|+||++||.++|.|+. ..|.++++++++|+.+++|+|||+++++.+
T Consensus         2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~   80 (109)
T 2vkp_A            2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD   80 (109)
T ss_dssp             CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred             cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence            5788999999999998    89999999999999999999999999988 899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 008940          450 IAQDLLRAADQYLLEGLKRLCEYTIAQDI  478 (548)
Q Consensus       450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~~l  478 (548)
                      ++.+++.+|++|+++.|++.|+++|.+++
T Consensus        81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~l  109 (109)
T 2vkp_A           81 TVLATLYAAKKYIVPALAKACVNFLETSL  109 (109)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence            99999999999999999999999998754

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.91  E-value=6.1e-24  Score=172.26  Aligned_cols=104  Identities=29%  Similarity=0.423  Sum_probs=95.8

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI  450 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~  450 (548)
                      .++++.++.++|+++.++|+.|+|||.||+++|+||++||.+++.|+....|.++++++++|+.+++|+|||++.++.++
T Consensus        16 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~   95 (120)
T 2if5_A           16 LNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTAN   95 (120)
T ss_dssp             HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGG
T ss_pred             HHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhChHhHHHHHHHHH
Q 008940          451 AQDLLRAADQYLLEGLKRLCEYTI  474 (548)
Q Consensus       451 ~~~ll~~a~~~~~~~l~~~c~~~l  474 (548)
                      +.+++.+|++|+++.|++.|+++|
T Consensus        96 ~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           96 VGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHh
Confidence            999999999999999999999987

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=1.3e-22  Score=183.10  Aligned_cols=187  Identities=24%  Similarity=0.331  Sum_probs=178.1

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +..++++..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..|+++|++++.++++++..+.+.|+++.|+
T Consensus        23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~  102 (210)
T 4db6_A           23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV  102 (210)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHH
Confidence            44679999999999999988899999999999999999999999999999999999999987889999999999999999


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      .+|.++++.++..|+++|++++.++++.++.+.+.|+++.|++++.+++++++..++++|.+++..++..+..+.+.|++
T Consensus       103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i  182 (210)
T 4db6_A          103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL  182 (210)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence            99999999999999999999998888888899999999999999999999999999999999998888889999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~  193 (548)
                      +.|+.++.++++.+++.|+++|.+++.
T Consensus       183 ~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          183 EKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999975

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.90  E-value=1.6e-23  Score=171.50  Aligned_cols=105  Identities=23%  Similarity=0.406  Sum_probs=100.6

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceec-CCCCHHHHHHHHHHHhcCccccchH
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLD  449 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Yt~~~~~~~~  449 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++.| ....|.+ +++++++|+.+++|+|||++.++.+
T Consensus        20 l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~   98 (127)
T 1r29_A           20 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREG   98 (127)
T ss_dssp             HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTT
T ss_pred             HHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHH
Confidence            4567899999999999999999999999999999999999999998 7789999 9999999999999999999999999


Q ss_pred             hHHHHHHHHHHhChHhHHHHHHHHHHh
Q 008940          450 IAQDLLRAADQYLLEGLKRLCEYTIAQ  476 (548)
Q Consensus       450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~  476 (548)
                      ++.+++.+|++|+++.|++.|+++|.+
T Consensus        99 ~~~~ll~~A~~~~i~~L~~~c~~~l~~  125 (127)
T 1r29_A           99 NIMAVMATAMYLQMEHVVDTCRKFIKA  125 (127)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            999999999999999999999999975

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.89  E-value=8.9e-24  Score=175.42  Aligned_cols=111  Identities=24%  Similarity=0.363  Sum_probs=103.6

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCccccchH
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLD  449 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~  449 (548)
                      .++++.++.+|||++.++|+.|+|||.||+++|+||++||.+++.++  ..|.++ ++++++|+.+|+|+|||++.++.+
T Consensus        27 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~  104 (138)
T 2z8h_A           27 LNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSKD  104 (138)
T ss_dssp             HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCTT
T ss_pred             HHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCHH
Confidence            45678899999999999999999999999999999999999988764  478885 899999999999999999999999


Q ss_pred             hHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhH
Q 008940          450 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENV  483 (548)
Q Consensus       450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~  483 (548)
                      ++.+++.+|++|+++.|++.|+++|.+.++.+|+
T Consensus       105 ~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sna  138 (138)
T 2z8h_A          105 NVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTS  138 (138)
T ss_dssp             THHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccC
Confidence            9999999999999999999999999999988763

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.1e-23  Score=210.38  Aligned_cols=309  Identities=16%  Similarity=0.141  Sum_probs=247.5

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhcC-CchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcc-----------------
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDE-----------------   71 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-----------------   71 (548)
                      +.++.|++.|..++ -+++.|..+++.. .++.|+++++. .+..+...++.+|.|++...+.                 
T Consensus       349 ~~~~~AvEgLaYLS-l~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~  427 (778)
T 3opb_A          349 PKVEMSVEALAYLS-LKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXX  427 (778)
T ss_dssp             HHHHHHHHHHHHHT-TSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----------
T ss_pred             cHHHHHHHHHHHHh-CCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccc
Confidence            34899999999999 5677777776664 49999999995 7788999999999999974221                 


Q ss_pred             ---------------------hhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh
Q 008940           72 ---------------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL  130 (548)
Q Consensus        72 ---------------------~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  130 (548)
                                           ++..+.+.|+++.|+.++.++++.+|+.++++|.+|+.+ +++|..+++.|+++.|+.+
T Consensus       428 ~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~l  506 (778)
T 3opb_A          428 XXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEY  506 (778)
T ss_dssp             -------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHH
T ss_pred             cCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHH
Confidence                                 355677889999999999999999999999999999865 8889999999999999999


Q ss_pred             hhcCChH---HHHHHHHHHHHhhcCCchhHHHHHh---cCChHHHHHhhCC-CCH-------------HHHHHHHHHHHH
Q 008940          131 LSSCCSE---SQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQS-PDV-------------QLREMSAFALGR  190 (548)
Q Consensus       131 l~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~~---~g~v~~L~~ll~~-~~~-------------~v~~~a~~~L~~  190 (548)
                      +.+....   .+..|+.+|.+++...... ..+..   .|++++|+.+|.. +..             .-+..|+.+|.|
T Consensus       507 L~s~~~~~~~~k~~AA~ALArLlis~np~-~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTN  585 (778)
T 3opb_A          507 LANKQDIGEPIRILGCRALTRMLIFTNPG-LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN  585 (778)
T ss_dssp             TTCC---CCHHHHHHHHHHHHHHHTSCHH-HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHH
T ss_pred             HhcCCCcchHHHHHHHHHHHHHHhcCCHH-HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHH
Confidence            9887644   7899999999998443221 12211   3889999999983 211             126799999999


Q ss_pred             hhcCCc-----chhhhHhc-CChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch-HHHHHhcCcccccccchhhhhhhH
Q 008940          191 LAQDMH-----NQAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIRVGGVQKLQDGEFIVQATKD  263 (548)
Q Consensus       191 l~~~~~-----~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~~~~~~~~~~~  263 (548)
                      |+..++     .+..++.. |+++.|..++.+.+..+++.|+++++||+.+++.. ..+...+.                
T Consensus       586 LAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~----------------  649 (778)
T 3opb_A          586 LASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN----------------  649 (778)
T ss_dssp             HHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS----------------
T ss_pred             HhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC----------------
Confidence            998873     26667774 89999999999999999999999999999877653 23311110                


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccC-CCccceeeecC-CchHHHHHhhcC--CCCccchh
Q 008940          264 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDG-GGLELLLGLLGS--TNPKQQLD  339 (548)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~-~~i~~L~~ll~~--~~~~v~~~  339 (548)
                                 -...+-++.|+.++++++.++|.+|+++|.+++. .+...+.+++. ++++.+++++.+  ++++++.+
T Consensus       650 -----------~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R  718 (778)
T 3opb_A          650 -----------PQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQR  718 (778)
T ss_dssp             -----------HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             -----------chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHH
Confidence                       0011247889999999999999999999999964 55555556665 899999999998  89999999


Q ss_pred             hHHHHHHHhh
Q 008940          340 GAVALFKLAN  349 (548)
Q Consensus       340 a~~~L~~l~~  349 (548)
                      ++.++.||+.
T Consensus       719 ~~~~l~NL~~  728 (778)
T 3opb_A          719 LLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999999997

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=7.7e-22  Score=184.83  Aligned_cols=225  Identities=18%  Similarity=0.164  Sum_probs=189.3

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHH-hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      +.+-+..|+..|..++ .+.++...+...|++++|+. +|+++++.+|..|+++|++++.+++..+..+++.|+++.|+.
T Consensus        53 ~~e~k~~Al~~L~~lv-~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           53 DQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-hChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            3467889999999999 56778888899999999999 999999999999999999999988999999999999999999


Q ss_pred             Hhcc-CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           88 MLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        88 ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      +|.+ ++..+++.|+|+|++++.+++...+.+...|+++.|+.++.+++..++..|+|+|.+++.++++.+..+++.|++
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence            9995 588999999999999999888888889999999999999999999999999999999998888899999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcC--ChHHH----HHhhc-CC-ChhHHHHHHHHHHhccc
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG--GLVPL----LKLLD-SK-NGSLQHNAAFALYGLAD  234 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~L----~~ll~-~~-~~~v~~~a~~~L~~l~~  234 (548)
                      +.|+.+|.++++.+++.++.+|++++...+........+  .+..+    .+-++ +. +.++.+.+..++.++-.
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999998743211111111  11111    22223 22 35666677777776654

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.89  E-value=1.6e-23  Score=169.06  Aligned_cols=102  Identities=25%  Similarity=0.363  Sum_probs=95.1

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI  450 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~  450 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++    ...|.++++++++|+.+++|+|||+++++.++
T Consensus        15 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~   90 (119)
T 3b84_A           15 LNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGN   90 (119)
T ss_dssp             HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTT
T ss_pred             HHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHH
Confidence            35678899999999999999999999999999999999999876    56899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhChHhHHHHHHHHHHh
Q 008940          451 AQDLLRAADQYLLEGLKRLCEYTIAQ  476 (548)
Q Consensus       451 ~~~ll~~a~~~~~~~l~~~c~~~l~~  476 (548)
                      +.+++.+|++|+++.|++.|+++|.+
T Consensus        91 v~~ll~~A~~~~i~~L~~~C~~~l~~  116 (119)
T 3b84_A           91 RDQVLLAARELRVPEAVELCQSFKPK  116 (119)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            99999999999999999999999875

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.89  E-value=1.9e-23  Score=174.17  Aligned_cols=105  Identities=24%  Similarity=0.389  Sum_probs=94.5

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCC--CCCCceecCCCCHHHHHHHHHHHhcCccccch
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVDVTL  448 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~  448 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++.+  +....|.++++++++|+.+|+|+|||++.++.
T Consensus        38 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~  117 (144)
T 2ppi_A           38 LSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNE  117 (144)
T ss_dssp             HHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCT
T ss_pred             HHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCH
Confidence            4567889999999999999999999999999999999999998875  66779999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhChHhHHHHHHHHHH
Q 008940          449 DIAQDLLRAADQYLLEGLKRLCEYTIA  475 (548)
Q Consensus       449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~  475 (548)
                      +++.+++.+|++|+++.|++.|+++|.
T Consensus       118 ~~v~~ll~~A~~l~i~~L~~~C~~~L~  144 (144)
T 2ppi_A          118 DTIQDVVQAADLLLLTDLKTLCCEFLE  144 (144)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence            999999999999999999999998763

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.89  E-value=2e-23  Score=172.24  Aligned_cols=107  Identities=24%  Similarity=0.330  Sum_probs=93.7

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI  450 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~  450 (548)
                      .++++.++.+|||++.++|+.|+|||.||+++|+||++||.+++    ...|.++++++++|+.+|+|+|||++.++.++
T Consensus        16 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~   91 (135)
T 2yy9_A           16 LNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGN   91 (135)
T ss_dssp             HHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTT
T ss_pred             HHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHH
Confidence            46688999999999999999999999999999999999999876    56899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhChHhHHHHHHHHHHhcCCHh
Q 008940          451 AQDLLRAADQYLLEGLKRLCEYTIAQDISLE  481 (548)
Q Consensus       451 ~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~  481 (548)
                      +.+++.+|++|+++.|++.|+++|.+.+...
T Consensus        92 v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~  122 (135)
T 2yy9_A           92 RDQVLLAAKELRVPEAVELCQSFQPQTSVGQ  122 (135)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999998776543

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.88  E-value=8.8e-23  Score=165.32  Aligned_cols=103  Identities=24%  Similarity=0.397  Sum_probs=96.4

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI  450 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~  450 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.++     ...|.++++++++|+.+++|+|||+++++.++
T Consensus        19 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~   93 (121)
T 1buo_A           19 ANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAED   93 (121)
T ss_dssp             HHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGG
T ss_pred             HHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHH
Confidence            4667889999999999999999999999999999999999863     45899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhChHhHHHHHHHHHHhcC
Q 008940          451 AQDLLRAADQYLLEGLKRLCEYTIAQDI  478 (548)
Q Consensus       451 ~~~ll~~a~~~~~~~l~~~c~~~l~~~l  478 (548)
                      +.+++.+|++|+++.|++.|+++|.+.|
T Consensus        94 ~~~ll~~A~~~~i~~L~~~c~~~l~~~I  121 (121)
T 1buo_A           94 LDDLLYAAEILEIEYLEEQCLKMLETIQ  121 (121)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999998643

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.88  E-value=8.6e-23  Score=164.25  Aligned_cols=101  Identities=22%  Similarity=0.381  Sum_probs=94.2

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecC--CCCHHHHHHHHHHHhcCccccch
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP--NIRWEVFELMMRFIYTGSVDVTL  448 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Yt~~~~~~~  448 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.++    .+..|.++  ++++++|+.+++|+|||+++++.
T Consensus        13 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~   88 (116)
T 2vpk_A           13 LNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDS   88 (116)
T ss_dssp             HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCT
T ss_pred             HHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCH
Confidence            3567889999999999999999999999999999999999876    35577777  99999999999999999999999


Q ss_pred             HhHHHHHHHHHHhChHhHHHHHHHHHH
Q 008940          449 DIAQDLLRAADQYLLEGLKRLCEYTIA  475 (548)
Q Consensus       449 ~~~~~ll~~a~~~~~~~l~~~c~~~l~  475 (548)
                      +++.+++.+|++|+++.|++.|+++|.
T Consensus        89 ~~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           89 WNVKEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            999999999999999999999999985

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=5.9e-22  Score=177.23  Aligned_cols=195  Identities=16%  Similarity=0.229  Sum_probs=172.0

Q ss_pred             CchHHHHhhccCCH--HHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940           39 GIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        39 ~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      .++.++++|+++++  +++..|+.+|.+++.++++++..+.+.|+++.|+++|.++++++++.|+++|+||+.++++++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            57899999999987  8999999999999988899999999999999999999999999999999999999998899999


Q ss_pred             HHHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC----------------CCCHH
Q 008940          117 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----------------SPDVQ  179 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~----------------~~~~~  179 (548)
                      .+.+.|+||.|+++|. +.+.++++.++.+|++|+.. +.++..+.+. +++.|+.++.                ..++.
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence            9999999999999998 47899999999999999865 6777777764 6899988763                13678


Q ss_pred             HHHHHHHHHHHhhcCC-cchhhhHhcCC-hHHHHHhhcCC------ChhHHHHHHHHHHhcccC
Q 008940          180 LREMSAFALGRLAQDM-HNQAGIAHNGG-LVPLLKLLDSK------NGSLQHNAAFALYGLADN  235 (548)
Q Consensus       180 v~~~a~~~L~~l~~~~-~~~~~~~~~~~-l~~L~~ll~~~------~~~v~~~a~~~L~~l~~~  235 (548)
                      ++++|..+|.||+... +.|..+.+.+| ++.|+.+++..      +...+++++.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            9999999999999754 77888987754 68899999752      567899999999999864

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=3e-21  Score=180.79  Aligned_cols=183  Identities=19%  Similarity=0.297  Sum_probs=170.3

Q ss_pred             HHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH-HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh
Q 008940           52 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL  130 (548)
Q Consensus        52 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  130 (548)
                      .+-+..|+..|.+++. +.+++..+.+.|+++.|+. +|.++++.++..|+++|++++.+++.+++.+++.|++|.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3578899999999997 6789999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-cchhhhHhcCChH
Q 008940          131 LSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLV  208 (548)
Q Consensus       131 l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~l~  208 (548)
                      |++ ++..+++.|+|+|++++.+++.....+.+.|+++.|+.+|+++++.++..|+|+|++++... +.+..+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            986 47889999999999999888888888999999999999999999999999999999999764 4577889999999


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940          209 PLLKLLDSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       209 ~L~~ll~~~~~~v~~~a~~~L~~l~~~  235 (548)
                      .|+.+|.++++.++..++.+|++++..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            999999999999999999999999876

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.87  E-value=2.1e-22  Score=162.42  Aligned_cols=100  Identities=22%  Similarity=0.347  Sum_probs=93.6

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI  450 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~  450 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.+     ....|.++++++++|+.+++|+|||++.++.++
T Consensus        18 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~-----~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~   92 (119)
T 2q81_A           18 LNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD-----QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPEN   92 (119)
T ss_dssp             HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH-----CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred             HHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC-----CCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHH
Confidence            456788999999999999999999999999999999999986     245788999999999999999999999999999


Q ss_pred             HHHHHHHHHHhChHhHHHHHHHHHH
Q 008940          451 AQDLLRAADQYLLEGLKRLCEYTIA  475 (548)
Q Consensus       451 ~~~ll~~a~~~~~~~l~~~c~~~l~  475 (548)
                      +.+++.+|++|++++|++.|++++.
T Consensus        93 ~~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           93 VDDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            9999999999999999999999874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.87  E-value=3e-21  Score=172.60  Aligned_cols=196  Identities=16%  Similarity=0.174  Sum_probs=171.4

Q ss_pred             ChHHHHHHhccCCh--HHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940           81 ALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  158 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  158 (548)
                      .++.++++|.++++  +++..|++.|.+++..++..+..+.+.|+||.|+++|.++++++++.|+|+|.|++.++++++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999998887  8999999999999988899999999999999999999999999999999999999988889999


Q ss_pred             HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc----------------CCChhH
Q 008940          159 HIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD----------------SKNGSL  221 (548)
Q Consensus       159 ~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------~~~~~v  221 (548)
                      .+.+.|++|.|+.+|+ +++.++++.++.+|+||+..+.++..+.+ +++++|++++.                ..+.++
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence            9999999999999998 57899999999999999998888888877 46888887663                125689


Q ss_pred             HHHHHHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh------hhh
Q 008940          222 QHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA------EKG  294 (548)
Q Consensus       222 ~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~------~~~  294 (548)
                      +++|+.+|.||+. +++.++.+.+.+                                |.++.|+.+++..      +..
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~--------------------------------Gli~~Lv~~l~~~~~~~~~~~k  215 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCD--------------------------------GLIDSLVHYVRGTIADYQPDDK  215 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTST--------------------------------THHHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCC--------------------------------CcHHHHHHHHHhhhhcccchhH
Confidence            9999999999987 457777776553                                3677888888873      457


Q ss_pred             hhhhHHHHhhhccCC
Q 008940          295 VQRRVALALAHLCSP  309 (548)
Q Consensus       295 ~~~~a~~aL~~l~~~  309 (548)
                      .++.+..+|.||+..
T Consensus       216 ~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          216 ATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            789999999999753

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.86  E-value=5e-23  Score=168.06  Aligned_cols=102  Identities=24%  Similarity=0.388  Sum_probs=95.5

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCC-CCHHHHHHHHHHHhcCccccchH
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPN-IRWEVFELMMRFIYTGSVDVTLD  449 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~-~~~~~~~~~l~~~Yt~~~~~~~~  449 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++.|  ...|.+++ +++++|+.+++|+|||++.++.+
T Consensus        23 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~  100 (125)
T 3ohu_A           23 LNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSRE  100 (125)
T ss_dssp             HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTT
T ss_pred             HHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHH
Confidence            4567889999999999999999999999999999999999998877  56899998 99999999999999999999999


Q ss_pred             hHHHHHHHHHHhChHhHHHHHHHHH
Q 008940          450 IAQDLLRAADQYLLEGLKRLCEYTI  474 (548)
Q Consensus       450 ~~~~ll~~a~~~~~~~l~~~c~~~l  474 (548)
                      ++.+++.+|++|+++.|++.|+++|
T Consensus       101 ~v~~ll~~A~~l~i~~L~~~C~~~L  125 (125)
T 3ohu_A          101 NIREVIRCAEFLRMHNLEDSCFSFL  125 (125)
T ss_dssp             THHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHhC
Confidence            9999999999999999999997653

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.86  E-value=1.5e-22  Score=165.99  Aligned_cols=103  Identities=23%  Similarity=0.361  Sum_probs=90.0

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecC-CCCHHHHHHHHHHHhcCccccchH
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLD  449 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~  449 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.++    ....|.++ ++++++|+.+++|+|||+++++.+
T Consensus        24 l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~   99 (129)
T 3ga1_A           24 LNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVG   99 (129)
T ss_dssp             HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTT
T ss_pred             HHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCHH
Confidence            4567889999999999999999999999999999999999876    56689996 999999999999999999999999


Q ss_pred             hHHHHHHHHHHhChHhHHHHHHHHHHhc
Q 008940          450 IAQDLLRAADQYLLEGLKRLCEYTIAQD  477 (548)
Q Consensus       450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~~  477 (548)
                      ++.+++.+|++|+++.|++.|+++|.+.
T Consensus       100 ~~~~ll~~A~~~~i~~l~~~C~~~L~~~  127 (129)
T 3ga1_A          100 DQDLLMYTAGFLQIQEIMEKGTEFFLKV  127 (129)
T ss_dssp             THHHHHHHHHHTTBTTSSCC--------
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999864

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.86  E-value=6.8e-23  Score=166.62  Aligned_cols=103  Identities=23%  Similarity=0.379  Sum_probs=93.3

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceec-CCCCHHHHHHHHHHHhcCccccchH
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLD  449 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Yt~~~~~~~~  449 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.+++.|+  ..|.+ +++++++|+.+|+|+|||+++++.+
T Consensus        20 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~   97 (124)
T 2ihc_A           20 LNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSKE   97 (124)
T ss_dssp             HHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEETT
T ss_pred             HHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCHH
Confidence            45678899999999999999999999999999999999999988765  47888 4899999999999999999999999


Q ss_pred             hHHHHHHHHHHhChHhHHHHHHHHHH
Q 008940          450 IAQDLLRAADQYLLEGLKRLCEYTIA  475 (548)
Q Consensus       450 ~~~~ll~~a~~~~~~~l~~~c~~~l~  475 (548)
                      ++.+++.+|++|+++.|++.|+++|.
T Consensus        98 ~v~~ll~~A~~~~~~~L~~~C~~~l~  123 (124)
T 2ihc_A           98 NVDEVCKCVEFLSVHNIEESCFQFLK  123 (124)
T ss_dssp             THHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence            99999999999999999999998764

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.86  E-value=8.5e-21  Score=194.62  Aligned_cols=305  Identities=15%  Similarity=0.123  Sum_probs=237.7

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhc-CChHHHHHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILM   88 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~l   88 (548)
                      +.++..|+-+|..+..........+.  ...+.+.++|.+++...+..|++.|..++. +++.++.+++. |.++.|+.+
T Consensus       308 ~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~l  384 (778)
T 3opb_A          308 EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTM  384 (778)
T ss_dssp             GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHH
Confidence            46788888888888743322221121  245667777777776679999999999997 68888888865 669999999


Q ss_pred             hcc-CChHHHHHHHHHHHHhhcCChh--------------------------------------HHHHHHhcCChHHHHH
Q 008940           89 LRS-EDSAIHYEAVGVIGNLVHSSPN--------------------------------------IKKEVLAAGALQPVIG  129 (548)
Q Consensus        89 l~~-~~~~v~~~a~~~L~~l~~~~~~--------------------------------------~~~~~~~~g~i~~L~~  129 (548)
                      +++ ++..+...++.+|.|++...+.                                      .+..+.+.|++|.|+.
T Consensus       385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~  464 (778)
T 3opb_A          385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKR  464 (778)
T ss_dssp             HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred             HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHH
Confidence            995 7888999999999999874331                                      3456678899999999


Q ss_pred             hhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHH---HHHHHHHHHHHhhcCCcchhhhH---h
Q 008940          130 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ---LREMSAFALGRLAQDMHNQAGIA---H  203 (548)
Q Consensus       130 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~---~  203 (548)
                      ++.+.++.++..++++|.+++. ++++|..+++.|+++.|+.++.++...   .+..|+.+|.++....+....+.   -
T Consensus       465 Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~  543 (778)
T 3opb_A          465 EMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA  543 (778)
T ss_dssp             HGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS
T ss_pred             HHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc
Confidence            9999999999999999999974 589999999999999999999987544   89999999999996654433221   1


Q ss_pred             cCChHHHHHhhcC-CC-h------------hHHHHHHHHHHhcccCCcc-----hHHHHHhcCcccccccchhhhhhhHH
Q 008940          204 NGGLVPLLKLLDS-KN-G------------SLQHNAAFALYGLADNEDN-----VADFIRVGGVQKLQDGEFIVQATKDC  264 (548)
Q Consensus       204 ~~~l~~L~~ll~~-~~-~------------~v~~~a~~~L~~l~~~~~~-----~~~~~~~g~i~~L~~~~~~~~~~~~~  264 (548)
                      .|++++|+.+|.. +. .            --+..|+.+|.||+..+++     +..+++.                   
T Consensus       544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-------------------  604 (778)
T 3opb_A          544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-------------------  604 (778)
T ss_dssp             TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-------------------
T ss_pred             ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-------------------
Confidence            3789999999983 21 1            1266899999999987633     3333221                   


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc-eeeecCC------chHHHHHhhcCCCCccc
Q 008940          265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFIDGG------GLELLLGLLGSTNPKQQ  337 (548)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~-~~~~~~~------~i~~L~~ll~~~~~~v~  337 (548)
                                   .++++.|..+|.+.+..+|.+|+++++||+.+++.. +.+.+.+      .++.|+.++++++.++|
T Consensus       605 -------------~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r  671 (778)
T 3opb_A          605 -------------KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQ  671 (778)
T ss_dssp             -------------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHH
T ss_pred             -------------cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHH
Confidence                         358899999999999999999999999999888763 2333222      37899999999999999


Q ss_pred             hhhHHHHHHHhhh
Q 008940          338 LDGAVALFKLANK  350 (548)
Q Consensus       338 ~~a~~~L~~l~~~  350 (548)
                      ++|+++|.+++..
T Consensus       672 ~AAagALAnLts~  684 (778)
T 3opb_A          672 RAVAAIFANIATT  684 (778)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999999653

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.84  E-value=2.3e-21  Score=155.32  Aligned_cols=93  Identities=20%  Similarity=0.232  Sum_probs=86.3

Q ss_pred             hcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHhHHHH
Q 008940          375 VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDL  454 (548)
Q Consensus       375 ~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~l  454 (548)
                      +.++.+||+++.++|+.|+|||.||+++|+||++         ....|.++++++++|+.+++|+|||++.++.+++.++
T Consensus        25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~l   95 (119)
T 3m5b_A           25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPL   95 (119)
T ss_dssp             HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHH
T ss_pred             HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHH
Confidence            5779999999999999999999999999999985         2457999999999999999999999999999999999


Q ss_pred             HHHHHHhChHhHHHHHHHHHHh
Q 008940          455 LRAADQYLLEGLKRLCEYTIAQ  476 (548)
Q Consensus       455 l~~a~~~~~~~l~~~c~~~l~~  476 (548)
                      +.+|++|+++.|++.|++++.+
T Consensus        96 l~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           96 QEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             HHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHHHHhCCHHHHHHHHHHHhh
Confidence            9999999999999999998764

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.83  E-value=1.6e-20  Score=150.28  Aligned_cols=93  Identities=27%  Similarity=0.450  Sum_probs=87.1

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCcc-ccchH
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSV-DVTLD  449 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~-~~~~~  449 (548)
                      .++++.++.+||+++.++|+.|+|||.||+++|+||++||.++     ...|.++++++++|+.+++|+|||++ .++.+
T Consensus        22 l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~   96 (116)
T 3fkc_A           22 LNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSD   96 (116)
T ss_dssp             HHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHH
T ss_pred             HHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHH
Confidence            4567889999999999999999999999999999999999864     56899999999999999999999999 79999


Q ss_pred             hHHHHHHHHHHhChHhHHH
Q 008940          450 IAQDLLRAADQYLLEGLKR  468 (548)
Q Consensus       450 ~~~~ll~~a~~~~~~~l~~  468 (548)
                      ++.+++.+|++|+++.|++
T Consensus        97 ~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           97 LLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             HHHHHHHHHHHHTCHHHHT
T ss_pred             HHHHHHHHHHHhCccccCc
Confidence            9999999999999999875

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.63  E-value=3.6e-14  Score=133.64  Aligned_cols=231  Identities=15%  Similarity=0.074  Sum_probs=180.4

Q ss_pred             HHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh
Q 008940           34 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN  113 (548)
Q Consensus        34 i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~  113 (548)
                      ....+.++.|++.|+++++.+|..|+++|+++..           .+.++.|+.++.++++.+|..++++|+.+......
T Consensus        19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            3445789999999999999999999999999873           23688899999999999999999999999643222


Q ss_pred             HHHHHHhcCChHHHH-HhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940          114 IKKEVLAAGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  192 (548)
Q Consensus       114 ~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  192 (548)
                      ..      ..++.+. .++.++++.++..++++|+++...++...     ...++.|...+.++++.++..++.+|+++.
T Consensus        88 ~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           88 ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            11      1234444 34677889999999999999975433222     235788999999999999999999999875


Q ss_pred             cCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHH
Q 008940          193 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL  272 (548)
Q Consensus       193 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~  272 (548)
                      .          .+.++.|..++.++++.++..++++|+.+.....                                   
T Consensus       157 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~-----------------------------------  191 (280)
T 1oyz_A          157 D----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS-----------------------------------  191 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-----------------------------------
T ss_pred             C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-----------------------------------
Confidence            3          2478899999999999999999999998853221                                   


Q ss_pred             HHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          273 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       273 ~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                            .+++.|+.++.++++.+|..|+++|+++.          ....++.|..++.++  +++..++.+|..+..
T Consensus       192 ------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          192 ------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD  250 (280)
T ss_dssp             ------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCc
Confidence                  25667778888888889999999998875          235788888888764  488888888888754

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.61  E-value=6.4e-14  Score=140.20  Aligned_cols=314  Identities=11%  Similarity=0.134  Sum_probs=233.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhcc--CCHHHHHHHHHHHHHhhccCcc--------------
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDE--------------   71 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~--------------   71 (548)
                      ...+-|+.|+..|..+++.   .+..+. .++++.|+..|+.  .|.++...++.+|.++...+++              
T Consensus        34 tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~  109 (651)
T 3grl_A           34 TLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL  109 (651)
T ss_dssp             CSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CH
T ss_pred             cchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHH
Confidence            3457799999999999853   333333 5899999999986  4688888899999887653332              


Q ss_pred             ---hhhHh-hhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh-HHHHHHh-cCChHHHHHhhhcCChHHHHHHHHH
Q 008940           72 ---NKNQI-VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLA-AGALQPVIGLLSSCCSESQREAALL  145 (548)
Q Consensus        72 ---~~~~~-~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~  145 (548)
                         +.+.+ .+.+.++.|+.+|++++..+|..++.+|..|+...++ .++.+.. .++++.|+.+|++..+.+|..++..
T Consensus       110 ~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL  189 (651)
T 3grl_A          110 GSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL  189 (651)
T ss_dssp             HHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence               12233 3457899999999999999999999999999988877 6777774 5999999999999999999999999


Q ss_pred             HHHhhcCCchhHHHHHhcCChHHHHHhhCCCCH----HHHHHHHHHHHHhhcCCc-chhhhHhcCChHHHHHhhcCCChh
Q 008940          146 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV----QLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDSKNGS  220 (548)
Q Consensus       146 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~----~v~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~  220 (548)
                      |.+++.++++.+..+.-.|+++.|+.+++.+..    .+...++.++.||...+. ++..+.+.|+++.|..+++.+++.
T Consensus       190 L~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~  269 (651)
T 3grl_A          190 LQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDEN  269 (651)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCS
T ss_pred             HHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccc
Confidence            999999999998888889999999999987443    688999999999998764 788899999999999999754321


Q ss_pred             ------HHHH---HHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 008940          221 ------LQHN---AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA  291 (548)
Q Consensus       221 ------v~~~---a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~  291 (548)
                            ...+   ++.++.-|.......                          .....+...+.+.|+++.|+.++.+.
T Consensus       270 ~~W~~Qk~~N~~~~L~iIrlLv~~~~~~--------------------------~~t~~nQ~~~~~~g~l~~Ll~ll~~~  323 (651)
T 3grl_A          270 SGWSAQKVTNLHLMLQLVRVLVSPNNPP--------------------------GATSSCQKAMFQCGLLQQLCTILMAT  323 (651)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTCTTSCH--------------------------HHHHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred             cccHHHHHHHHHHHHHHHHHHhCCCCCC--------------------------CCCHHHHHHHHHCCCHHHHHHHHccC
Confidence                  1122   333333343321110                          01223444567788899999988874


Q ss_pred             --hhhhhhhHHHHhhhccCCCc-cceeeecCC-----chHHHHH----hhcCC-CCccchhhHHHHHHHhhhc
Q 008940          292 --EKGVQRRVALALAHLCSPDD-QRTIFIDGG-----GLELLLG----LLGST-NPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       292 --~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~-----~i~~L~~----ll~~~-~~~v~~~a~~~L~~l~~~~  351 (548)
                        ...++..|+.+++.++++.. ++..+.+..     ..|.++.    ++.+. ...+|.+|+.++.....+.
T Consensus       324 ~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N  396 (651)
T 3grl_A          324 GVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN  396 (651)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence              67788999999999987644 554443322     2233444    35443 3555888888888877654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.61  E-value=5.2e-14  Score=140.82  Aligned_cols=321  Identities=15%  Similarity=0.141  Sum_probs=236.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhChh-----------------h-HHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccC
Q 008940            8 AVNSVIRRAADAITNLAHENSS-----------------I-KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN   69 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~-----------------~-~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~   69 (548)
                      ...++.+.++..|.++...++.                 + ...+.+.+.++.|+.+|++.+..+|..+++.|..++.++
T Consensus        74 ~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r  153 (651)
T 3grl_A           74 SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQL  153 (651)
T ss_dssp             TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcC
Confidence            4457888899999887643322                 1 134456688999999999999999999999999999877


Q ss_pred             cc-hhhHhhh-cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCCh----HHHHHHH
Q 008940           70 DE-NKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS----ESQREAA  143 (548)
Q Consensus        70 ~~-~~~~~~~-~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~a~  143 (548)
                      ++ .++.+.. .++++.|+.+|.+..+.+|..++.+|.+|+.+++++++.+.-+|+++.|+.++..+..    .+...|+
T Consensus       154 ~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL  233 (651)
T 3grl_A          154 GPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL  233 (651)
T ss_dssp             HHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHH
T ss_pred             cHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHH
Confidence            77 7777875 4999999999999999999999999999999999999999999999999999987554    6889999


Q ss_pred             HHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCH------HHHHH---HHHHHHHhhcCC-------cchhhhHhcCCh
Q 008940          144 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV------QLREM---SAFALGRLAQDM-------HNQAGIAHNGGL  207 (548)
Q Consensus       144 ~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~------~v~~~---a~~~L~~l~~~~-------~~~~~~~~~~~l  207 (548)
                      .++.||...++.++..+.+.|+++.|..+++.+++      ....+   +..++.-++...       .++..+.+.|++
T Consensus       234 ~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l  313 (651)
T 3grl_A          234 ILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLL  313 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCH
Confidence            99999999999999999999999999999985432      12233   556666666442       246788899999


Q ss_pred             HHHHHhhcCC--ChhHHHHHHHHHHhccc-CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHH
Q 008940          208 VPLLKLLDSK--NGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL  284 (548)
Q Consensus       208 ~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  284 (548)
                      ..|++++...  ...++..|+.+++.+.+ ++.++..+.+..+ +....                       ...++..|
T Consensus       314 ~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v-p~~~~-----------------------~p~li~lL  369 (651)
T 3grl_A          314 QQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA-PSNPP-----------------------RPAIVVLL  369 (651)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE-SSSSC-----------------------EEHHHHHH
T ss_pred             HHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC-CCCCC-----------------------cChHHHHH
Confidence            9999998865  56788899999999976 5556666654431 11000                       01133334


Q ss_pred             HHHHHh-hhhhhhhhHHHHhhhccCCCc-cceeeecC----------Cch---HHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          285 LYLMRV-AEKGVQRRVALALAHLCSPDD-QRTIFIDG----------GGL---ELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       285 ~~ll~~-~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~----------~~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                      +.++.+ ....+|.+|+.++..+..+.+ .+..+...          +.+   ..|..-+.+.++.-.-.|+.+|.++..
T Consensus       370 ~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~  449 (651)
T 3grl_A          370 MSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ  449 (651)
T ss_dssp             HHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc
Confidence            444444 457788899998888765432 22222111          111   124444555555444567888888887


Q ss_pred             hcc
Q 008940          350 KAT  352 (548)
Q Consensus       350 ~~~  352 (548)
                      +..
T Consensus       450 ~n~  452 (651)
T 3grl_A          450 ENA  452 (651)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.54  E-value=4.1e-13  Score=126.41  Aligned_cols=241  Identities=15%  Similarity=0.133  Sum_probs=183.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH-
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-   86 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv-   86 (548)
                      ..+.++..|+.+|..+..           .+.++.|+++++++++.+|..|+.+|+.+... +....     ..++.|. 
T Consensus        35 ~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~~-----~l~~~L~~   97 (280)
T 1oyz_A           35 HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCED-----NVFNILNN   97 (280)
T ss_dssp             SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHH-----HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccch-----HHHHHHHH
Confidence            456788888888887761           23567899999999999999999999998742 22111     1233444 


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      .+++++++.+|..++++|+++....+...     ...++.|..++.++++.++..++++|+++..           .+.+
T Consensus        98 ~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~  161 (280)
T 1oyz_A           98 MALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATI  161 (280)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHH
Confidence            24578899999999999999974433221     2357899999999999999999999998842           2588


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG  246 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g  246 (548)
                      +.|+.+++++++.++..++++|+.+....        ...++.|..++.++++.++..++.+|+++...           
T Consensus       162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~-----------  222 (280)
T 1oyz_A          162 PLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK-----------  222 (280)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG-----------
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCH-----------
Confidence            99999999999999999999999985322        13567899999999999999999999998621           


Q ss_pred             CcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHH
Q 008940          247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL  326 (548)
Q Consensus       247 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~  326 (548)
                                                      ..++.|+.++.+  ++++..++.+|+.+..          ...++.|.
T Consensus       223 --------------------------------~~~~~L~~~l~d--~~vr~~a~~aL~~i~~----------~~~~~~L~  258 (280)
T 1oyz_A          223 --------------------------------RVLSVLCDELKK--NTVYDDIIEAAGELGD----------KTLLPVLD  258 (280)
T ss_dssp             --------------------------------GGHHHHHHHHTS--SSCCHHHHHHHHHHCC----------GGGHHHHH
T ss_pred             --------------------------------hhHHHHHHHhcC--ccHHHHHHHHHHhcCc----------hhhhHHHH
Confidence                                            156677777765  4499999999998854          25789999


Q ss_pred             HhhcC-CCCccchhhHHHH
Q 008940          327 GLLGS-TNPKQQLDGAVAL  344 (548)
Q Consensus       327 ~ll~~-~~~~v~~~a~~~L  344 (548)
                      .++.+ ++++++..+...|
T Consensus       259 ~~l~~~~~~~~~~~~~~~l  277 (280)
T 1oyz_A          259 TMLYKFDDNEIITSAIDKL  277 (280)
T ss_dssp             HHHTTSSCCHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHh
Confidence            99874 5566666666554

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.52  E-value=8.2e-14  Score=152.40  Aligned_cols=334  Identities=14%  Similarity=0.063  Sum_probs=226.7

Q ss_pred             hhhHHHHHHHHHHHHHhhh-----ChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCCh
Q 008940            8 AVNSVIRRAADAITNLAHE-----NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL   82 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   82 (548)
                      ..+.+|..|+-.|.+....     +++.+..     +-..+++.+.++++.+|..++.++..++..+...    ...+.+
T Consensus        60 ~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~-----ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll  130 (852)
T 4fdd_A           60 EDEPTRSLSGLILKNNVKAHFQNFPNGVTDF-----IKSECLNNIGDSSPLIRATVGILITTIASKGELQ----NWPDLL  130 (852)
T ss_dssp             SCHHHHHHHHHHHHHHTTTSGGGCCHHHHHH-----HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT----TCTTHH
T ss_pred             CChHHHHHHHHHHHHHHHHccCCCCHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc----ccHHHH
Confidence            3457788888778777632     2222332     2346667778888999999999999999743211    235678


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH----hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940           83 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL----AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  158 (548)
Q Consensus        83 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  158 (548)
                      +.|+..+.++++.+++.++.+|+.++...+.....-.    -...++.+++++.+.+++++..|+++|.++....+....
T Consensus       131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~  210 (852)
T 4fdd_A          131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM  210 (852)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence            9999999999999999999999999865433211100    123577888888889999999999999988755432111


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940          159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                      . .-.++++.+...+.++++.++..++++|..++...+....-.-.+.++.++..+.+.++.++..|+..+..++.....
T Consensus       211 ~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~  289 (852)
T 4fdd_A          211 L-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC  289 (852)
T ss_dssp             T-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred             H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH
Confidence            1 112567888888999999999999999999997554321111124566778888888999999999999999876533


Q ss_pred             hHHHHH--hcCcccccccc-----------hh------------hhhhhHHHHHHHHHHHHhhhhh----hhHHHHHHHH
Q 008940          239 VADFIR--VGGVQKLQDGE-----------FI------------VQATKDCVAKTLKRLEEKIHGR----VLNHLLYLMR  289 (548)
Q Consensus       239 ~~~~~~--~g~i~~L~~~~-----------~~------------~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~ll~  289 (548)
                      ...+..  ...++.+....           .+            ......+...++..+.......    +++.+..++.
T Consensus       290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~  369 (852)
T 4fdd_A          290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF  369 (852)
T ss_dssp             HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence            221100  01222221110           00            0011233445555555544444    4455555566


Q ss_pred             hhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          290 VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       290 ~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ++++.+|..|+++|++++.+......-.-.+.++.++.++.++++.||..+++++.+++...
T Consensus       370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  431 (852)
T 4fdd_A          370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV  431 (852)
T ss_dssp             CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            68899999999999999986542211123467899999999999999999999999999753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.49  E-value=8.3e-14  Score=152.34  Aligned_cols=305  Identities=14%  Similarity=0.097  Sum_probs=214.1

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHH----hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVR----MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT   84 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~----~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   84 (548)
                      .+.+++.++.+|..++...+..-..-.    -...++.++++++++++.+|..|+.+|..+....+...... -.++++.
T Consensus       141 ~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~  219 (852)
T 4fdd_A          141 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIEN  219 (852)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHH
Confidence            457888999999999864333211000    12356777778888899999999999998886433211111 1246788


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH--h
Q 008940           85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV--Q  162 (548)
Q Consensus        85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~  162 (548)
                      ++.++.++++++|..++++|..++...++.-.... .++++.+..++.+.+++++..|+.++..++... ..+..+.  -
T Consensus       220 l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~  297 (852)
T 4fdd_A          220 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHL  297 (852)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHH
Confidence            88888899999999999999999876665322222 247788888889989999999999999998542 2222111  1


Q ss_pred             cCChHHHHHhh-----------CC-----------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChh
Q 008940          163 RGAVRPLIEML-----------QS-----------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS  220 (548)
Q Consensus       163 ~g~v~~L~~ll-----------~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  220 (548)
                      ..+++.++..+           .+           .+..++..++.+|..++...+.  .+. ...++.+.+++.+.++.
T Consensus       298 ~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~  374 (852)
T 4fdd_A          298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWV  374 (852)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHH
Confidence            23566666666           23           2235789999999999865432  221 23566677888888999


Q ss_pred             HHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHH
Q 008940          221 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA  300 (548)
Q Consensus       221 v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~  300 (548)
                      ++..|+++|++++.....  .+ +                              ..-.++++.++.++.++++.+|..++
T Consensus       375 ~R~aa~~alg~i~~~~~~--~~-~------------------------------~~l~~~l~~l~~~l~d~~~~Vr~~a~  421 (852)
T 4fdd_A          375 VKESGILVLGAIAEGCMQ--GM-I------------------------------PYLPELIPHLIQCLSDKKALVRSITC  421 (852)
T ss_dssp             HHHHHHHHHHHTTTTTHH--HH-G------------------------------GGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchH--HH-H------------------------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999999999999875431  11 0                              01134788889999999999999999


Q ss_pred             HHhhhccCCCc-cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          301 LALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       301 ~aL~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      +++++++..-. ......-.+.++.|++.+.++++.+|..|+++|.++++...
T Consensus       422 ~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~  474 (852)
T 4fdd_A          422 WTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC  474 (852)
T ss_dssp             HHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            99999986321 11111123567888999988899999999999999997643

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.48  E-value=1.2e-12  Score=117.41  Aligned_cols=189  Identities=28%  Similarity=0.312  Sum_probs=158.7

Q ss_pred             cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940           37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      .+.++.|++.|+++++.+|..|+..|+.+..           .+.++.|+.++.++++.+|..++++|+.+..       
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            4568899999999999999999999998764           2578999999999999999999999999842       


Q ss_pred             HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940          117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  196 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  196 (548)
                          .+.++.|+.++.++++.++..++++|..+..           .+.++.|+.++.++++.++..++.+|+++..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                2468899999999999999999999999842           2477899999999999999999999999843   


Q ss_pred             chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940          197 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  276 (548)
Q Consensus       197 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  276 (548)
                             ...++.|..++.++++.++..++.+|..+...                                         
T Consensus       142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------------------------------------  173 (211)
T 3ltm_A          142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE-----------------------------------------  173 (211)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-----------------------------------------
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-----------------------------------------
Confidence                   23678899999999999999999999998531                                         


Q ss_pred             hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc
Q 008940          277 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD  311 (548)
Q Consensus       277 ~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~  311 (548)
                        ..++.|..++.++++.+|..|..+|.++.....
T Consensus       174 --~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          174 --RVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             --HHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             --hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence              256778888999999999999999999976544

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.46  E-value=5.6e-13  Score=139.62  Aligned_cols=296  Identities=16%  Similarity=0.100  Sum_probs=216.5

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ...+.++..|+.+|..++...+..   ......++.+..+++++++.+|..|+.+|..++...+..   .....+++.+.
T Consensus       175 d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~  248 (588)
T 1b3u_A          175 DDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLR  248 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHH
Confidence            346788999999999988533221   122467788888888889999999999999988632221   12234778888


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchh-HHHHHhcCC
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGA  165 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~  165 (548)
                      .++.++++.+|..++.+|+.++.....   .......++.+..++.+++++++..++++|..++...... +.......+
T Consensus       249 ~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  325 (588)
T 1b3u_A          249 QAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQI  325 (588)
T ss_dssp             HHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHH
Confidence            888899999999999999999753211   1233457899999999999999999999999998654322 111233467


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHh
Q 008940          166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV  245 (548)
Q Consensus       166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  245 (548)
                      +|.+..+++++++.+|..++++|..++......  ......++.+..++++.+++++..++.++..++..-...      
T Consensus       326 ~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------  397 (588)
T 1b3u_A          326 LPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR------  397 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH------
Confidence            888999999999999999999999998543221  122346777889999889999999988888776432110      


Q ss_pred             cCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHH
Q 008940          246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELL  325 (548)
Q Consensus       246 g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L  325 (548)
                                                   .....+++.+..++.+.++.+|..++.++..++..-...  +.....++.+
T Consensus       398 -----------------------------~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l  446 (588)
T 1b3u_A          398 -----------------------------QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLC  446 (588)
T ss_dssp             -----------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHH
T ss_pred             -----------------------------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHH
Confidence                                         011236777788888888999999999999886421111  1223467888


Q ss_pred             HHhhcCCCCccchhhHHHHHHHhhh
Q 008940          326 LGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       326 ~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      .+++.+++..+|..|+.++..++..
T Consensus       447 ~~~l~d~~~~Vr~~a~~~l~~l~~~  471 (588)
T 1b3u_A          447 MAWLVDHVYAIREAATSNLKKLVEK  471 (588)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            9999999899999999999999875

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.45  E-value=3.8e-12  Score=113.23  Aligned_cols=185  Identities=28%  Similarity=0.317  Sum_probs=158.6

Q ss_pred             cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940           37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      .+..+.++++|+++++.+|..|+.+|+.+..           .+.++.|+.++.++++.+|..++++|+.+..       
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            3567889999999999999999999998774           2468999999999999999999999998842       


Q ss_pred             HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940          117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  196 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  196 (548)
                          ...++.|+.++.++++.++..++++|..+..           .+.++.|..++.++++.++..++++|+.+..   
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                2468899999999999999999999999842           2477889999999999999999999999853   


Q ss_pred             chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940          197 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  276 (548)
Q Consensus       197 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  276 (548)
                             ...++.|..++.++++.++..++.+|+.+...                                         
T Consensus       137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~-----------------------------------------  168 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE-----------------------------------------  168 (201)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-----------------------------------------
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-----------------------------------------
Confidence                   24678899999999999999999999998421                                         


Q ss_pred             hhhhhHHHHHHHHhhhhhhhhhHHHHhhhcc
Q 008940          277 HGRVLNHLLYLMRVAEKGVQRRVALALAHLC  307 (548)
Q Consensus       277 ~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~  307 (548)
                        ..++.|..++.++++.+|..|..+|..+-
T Consensus       169 --~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          169 --RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             --HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             --hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence              25677888889999999999999998874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.45  E-value=7.9e-13  Score=118.72  Aligned_cols=189  Identities=23%  Similarity=0.248  Sum_probs=158.7

Q ss_pred             cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940           79 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  158 (548)
Q Consensus        79 ~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  158 (548)
                      .+.++.|+..|.++++.+|..++..|+.+..           .+.++.|+.++.++++.++..++++|..+..       
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            4578999999999999999999999998842           2478999999999999999999999999842       


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940          159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                          .+.++.|+.++.++++.++..++.+|+.+..          .+.++.|..++.++++.++..++.+|+++...   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---  142 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---  142 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH---
Confidence                2477899999999999999999999999853          24678899999999999999999999998532   


Q ss_pred             hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec
Q 008940          239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID  318 (548)
Q Consensus       239 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~  318 (548)
                                                              ..++.|..++.++++.+|..|+.+|+.+..          
T Consensus       143 ----------------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------  172 (211)
T 3ltm_A          143 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG----------  172 (211)
T ss_dssp             ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------
T ss_pred             ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence                                                    146778888888999999999999999842          


Q ss_pred             CCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          319 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       319 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      ...++.|.+++.++++.+|..|..+|.++..+..
T Consensus       173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          173 ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            4578899999999999999999999999877543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.45  E-value=5.2e-13  Score=139.87  Aligned_cols=326  Identities=13%  Similarity=0.080  Sum_probs=221.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcc-hhhHhhhcCChHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLI   86 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv   86 (548)
                      .++.+|..++.+|..++...+.   .......++.+..+++++++.+|..|+.+|+.++..-.. .+.......+++.+.
T Consensus       254 ~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~  330 (588)
T 1b3u_A          254 KSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK  330 (588)
T ss_dssp             SSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHH
Confidence            3457888888888888742111   112335678888999999999999999999999864222 111122345778888


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      .+++++++.+|..++++|+.++.....   .......+|.+..++.+.+++++..++.++..++......   .....++
T Consensus       331 ~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~l  404 (588)
T 1b3u_A          331 ELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLL  404 (588)
T ss_dssp             HHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHH
Confidence            999999999999999999999743211   1222357889999999999999999999988887432211   1224577


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG  246 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g  246 (548)
                      |.+..++.+++..+|..++.++..++......  ......++.+..++.+++..++..++.+++.++..-...  .....
T Consensus       405 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~  480 (588)
T 1b3u_A          405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHAT  480 (588)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHH
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHH
Confidence            88889999999999999999999998532221  112234677888899999999999999999997532211  11223


Q ss_pred             Ccccccccchhhh-hhhHHHHHHHHHHHHh-----hhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCC
Q 008940          247 GVQKLQDGEFIVQ-ATKDCVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG  320 (548)
Q Consensus       247 ~i~~L~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~  320 (548)
                      +++.|........ ........++..+...     ....+++.++.++++.++.+|..++++|+.++..-...  +....
T Consensus       481 llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~  558 (588)
T 1b3u_A          481 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSE  558 (588)
T ss_dssp             THHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHH
Confidence            4444332111100 1111122222222221     22357788888888888999999999999997532211  12245


Q ss_pred             chHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940          321 GLELLLGLLGSTNPKQQLDGAVALFKLA  348 (548)
Q Consensus       321 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~  348 (548)
                      .+|.|.+++.++++++|..|+.++..+.
T Consensus       559 ~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          559 VKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            6788888888999999999999998764

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.41  E-value=2.1e-12  Score=114.99  Aligned_cols=186  Identities=24%  Similarity=0.259  Sum_probs=158.3

Q ss_pred             cCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940           79 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  158 (548)
Q Consensus        79 ~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  158 (548)
                      .+..+.+++.|+++++.+|..|++.|+.+..           .+.++.|++++.++++.++..++++|..+..       
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            3567889999999999999999999998842           2468899999999999999999999998842       


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940          159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                          .+.++.|+..+.++++.++..++++|+.+..          ...++.|..++.++++.++..++.+|+++...   
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---  137 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---  137 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH---
Confidence                2467899999999999999999999999853          23678899999999999999999999988531   


Q ss_pred             hHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec
Q 008940          239 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID  318 (548)
Q Consensus       239 ~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~  318 (548)
                                                              ..++.|..++.+.++.+|..|+++|+.+..          
T Consensus       138 ----------------------------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------  167 (201)
T 3ltj_A          138 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG----------  167 (201)
T ss_dssp             ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------
T ss_pred             ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence                                                    256778888988999999999999999832          


Q ss_pred             CCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          319 GGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       319 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                      ...++.|..++.++++.+|..|..+|.++..
T Consensus       168 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          168 ERVRAAMEKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence            3478899999999999999999999988753

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.40  E-value=1.4e-12  Score=132.27  Aligned_cols=298  Identities=12%  Similarity=0.042  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhc
Q 008940           14 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR   90 (548)
Q Consensus        14 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~   90 (548)
                      ..++.++..++........   -.+.++.|++.++++  ++.++..++.+|+.++... ++...... ..+++.++..+.
T Consensus       107 ~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~  182 (462)
T 1ibr_B          107 SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMR  182 (462)
T ss_dssp             CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhC
Confidence            3455666666643211101   135678888888888  8999999999999999632 22211111 236778888888


Q ss_pred             cC--ChHHHHHHHHHHHHhhcCChhHH-HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940           91 SE--DSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR  167 (548)
Q Consensus        91 ~~--~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  167 (548)
                      ++  +..+|..|+++++++.....+.. ......-.++.+...+.+.+++++..++.+|..++...+.........++++
T Consensus       183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~  262 (462)
T 1ibr_B          183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA  262 (462)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77  78999999999999764322111 0111111466667777888899999999999999865443211111126777


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCc------------------chhhhHh---cCChHHHHHhhcC-------CCh
Q 008940          168 PLIEMLQSPDVQLREMSAFALGRLAQDMH------------------NQAGIAH---NGGLVPLLKLLDS-------KNG  219 (548)
Q Consensus       168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------------~~~~~~~---~~~l~~L~~ll~~-------~~~  219 (548)
                      .++..+++.++.++..++..+..++....                  ....+..   ...++.+++.+..       .+.
T Consensus       263 ~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~  342 (462)
T 1ibr_B          263 ITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW  342 (462)
T ss_dssp             HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccc
Confidence            78888888899999999999999885421                  0001111   1234445555532       224


Q ss_pred             hHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940          220 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV  299 (548)
Q Consensus       220 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a  299 (548)
                      .++..|+.+|..++..-..  .+                                  -..+++.+...+.+.++.+|..|
T Consensus       343 ~~r~~a~~~L~~l~~~~~~--~~----------------------------------~~~~~~~l~~~l~~~~~~~r~aa  386 (462)
T 1ibr_B          343 NPCKAAGVCLMLLATCCED--DI----------------------------------VPHVLPFIKEHIKNPDWRYRDAA  386 (462)
T ss_dssp             SHHHHHHHHHHHHHHHTTT--TH----------------------------------HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccH--HH----------------------------------HHHHHHHHHHHhcCCChHHHHHH
Confidence            5677777777777643211  00                                  01255666667777899999999


Q ss_pred             HHHhhhccCCCc-cceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          300 ALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       300 ~~aL~~l~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      +.+|+.++.+.. ....-.-...++.+++++.++++.+|..|+++|.+++...
T Consensus       387 l~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            999999997643 1111112568999999999999999999999999999864

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.34  E-value=2.7e-12  Score=97.90  Aligned_cols=79  Identities=23%  Similarity=0.403  Sum_probs=65.0

Q ss_pred             EEEEe-CCeEEEchHHHHhcccHHHHhhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHh-----c---Cccc---cch
Q 008940          383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIY-----T---GSVD---VTL  448 (548)
Q Consensus       383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----t---~~~~---~~~  448 (548)
                      +++.. ||+.|.+||.+ +..|+||++||.+  ++.|+.+..|+++++++.+++.+++|+|     +   +.++   ++.
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~   82 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   82 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence            34443 68999999999 9999999999986  6778888899999999999999999999     5   6777   899


Q ss_pred             HhHHHHHHHHHHhC
Q 008940          449 DIAQDLLRAADQYL  462 (548)
Q Consensus       449 ~~~~~ll~~a~~~~  462 (548)
                      +++.+|+.||++|+
T Consensus        83 ~~l~eLl~AAnyL~   96 (97)
T 4ajy_C           83 EIALELLMAANFLD   96 (97)
T ss_dssp             GGHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhC
Confidence            99999999999997

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.34  E-value=1.4e-11  Score=128.31  Aligned_cols=316  Identities=15%  Similarity=0.093  Sum_probs=216.9

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +.+|.++..|+++|+++.  .++...     ..++.+.+++.++++.+|..|+.++.++...+++..   .+.+.++.+.
T Consensus        97 ~~n~~ir~~AL~~L~~i~--~~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~  166 (591)
T 2vgl_B           97 DPNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLR  166 (591)
T ss_dssp             SSSHHHHHHHHHHHHTCC--SGGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCC--hHHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHH
Confidence            456777878877777775  333222     245678899999999999999999999998655533   2346789999


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      .+|.++++.++..|+.+|..++..+++.+......+.++.|+..+.+.++..+...+.++..++..++...     ...+
T Consensus       167 ~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l  241 (591)
T 2vgl_B          167 DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSIC  241 (591)
T ss_dssp             HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHH
T ss_pred             HHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHH
Confidence            99999999999999999999987765321000011235677777777888888888888888874433221     2467


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCC---cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDM---HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI  243 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  243 (548)
                      +.+..++++.++.++..|++++.++....   +...........+.|+.++ +++++++..++.+|..+....+.     
T Consensus       242 ~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-----  315 (591)
T 2vgl_B          242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-----  315 (591)
T ss_dssp             HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-----
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-----
Confidence            88888899999999999999999997432   1111112234556677666 47899999999999999763221     


Q ss_pred             HhcCcccccccchh-hhhhhHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeec
Q 008940          244 RVGGVQKLQDGEFI-VQATKDCVAKTLKRLEEKIHGR----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID  318 (548)
Q Consensus       244 ~~g~i~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~  318 (548)
                         .+.......+. ..........+++.+..+.+..    +++.|..++.+.+.++|..++++++.++..-..    ..
T Consensus       316 ---~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~~  388 (591)
T 2vgl_B          316 ---ILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----SA  388 (591)
T ss_dssp             ---TTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----HH
T ss_pred             ---HHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----HH
Confidence               11111111011 0111222334455554454433    566666777778999999999999999865321    11


Q ss_pred             CCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          319 GGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       319 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      ...++.|++++.+....++..+..++.++...
T Consensus       389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~  420 (591)
T 2vgl_B          389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK  420 (591)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence            34689999999998888888888899998875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.31  E-value=4e-11  Score=124.93  Aligned_cols=259  Identities=14%  Similarity=0.095  Sum_probs=194.0

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      +.+.+++++++++..++..+..++..++..+++...     -++..+.+-+.++++.+|..|+++|+++.  .++..+. 
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-  121 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-  121 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-
Confidence            456788899999999999999999998864444322     24667778888999999999999999995  3444333 


Q ss_pred             HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940          119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  198 (548)
Q Consensus       119 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  198 (548)
                          .++.+.+++.+.++.+++.|+.++.+++..+++..   .+.++++.+..+|.++++.++..|+.+|..++...+..
T Consensus       122 ----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~  194 (591)
T 2vgl_B          122 ----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS  194 (591)
T ss_dssp             ----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred             ----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence                46789999999999999999999999987665532   23578899999999999999999999999999765432


Q ss_pred             h-hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhh
Q 008940          199 A-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH  277 (548)
Q Consensus       199 ~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (548)
                      . .-...+.+..|+..+.+.++..+...+.++..++..++..                                     .
T Consensus       195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~-------------------------------------~  237 (591)
T 2vgl_B          195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE-------------------------------------A  237 (591)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH-------------------------------------H
T ss_pred             cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH-------------------------------------H
Confidence            1 1111233556777777788888888888888887543210                                     1


Q ss_pred             hhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC----CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          278 GRVLNHLLYLMRVAEKGVQRRVALALAHLCSP----DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       278 ~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~----~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ..+++.+..++++.++.++.+|++++.++...    ++..+.+ -....+.|+.++. +++++|..|+.+|..+....
T Consensus       238 ~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~  313 (591)
T 2vgl_B          238 QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKR  313 (591)
T ss_dssp             HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhC
Confidence            23566777778889999999999999999752    2221111 1245677777664 78899999999999998763

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.26  E-value=2.4e-11  Score=99.57  Aligned_cols=100  Identities=15%  Similarity=0.209  Sum_probs=85.2

Q ss_pred             EEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCc------------------
Q 008940          383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------  443 (548)
Q Consensus       383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------------  443 (548)
                      +++.. +|+.|.+|+.+ +..|++|++||...   + ...|+++++++.+++.+++|+|...                  
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~---~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~   78 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL---G-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD   78 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT---C-CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc---C-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence            55665 68999999998 88999999999753   1 5589999999999999999999876                  


Q ss_pred             --------cccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHHH
Q 008940          444 --------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMY  487 (548)
Q Consensus       444 --------~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~~  487 (548)
                              +.++.+++.+|+.||++|+++.|.++|+.++...+...+.-++.
T Consensus        79 i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR  130 (141)
T 1fs1_B           79 IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIR  130 (141)
T ss_dssp             --HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             hhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence                    56788899999999999999999999999998777665554443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.19  E-value=1.1e-10  Score=121.93  Aligned_cols=306  Identities=13%  Similarity=0.140  Sum_probs=208.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +.+|.++..|+++|+++..  ++.    . ...++.+.++++++++.+|..|+.++.++...+++...     +.++.+.
T Consensus       118 ~~n~~vr~lAL~~L~~i~~--~~~----~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~  185 (618)
T 1w63_A          118 HSTQFVQGLALCTLGCMGS--SEM----C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATK  185 (618)
T ss_dssp             CSSSHHHHHHHHHHHHHCC--HHH----H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTT
T ss_pred             CCCHhHHHHHHHHHHhcCC--HHH----H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHH
Confidence            4567888888999988872  332    1 24567889999999999999999999999986665433     5778888


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc---------------CChHHHHHHHHHHHHhhc
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS---------------CCSESQREAALLLGQFAA  151 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~  151 (548)
                      .++.+.++.++..|+.+|..++..+++....+  ...+|.++.+|.+               .++-.+...+.+|..++.
T Consensus       186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~  263 (618)
T 1w63_A          186 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR  263 (618)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence            89999999999999999999987655532222  2578888887763               367778888899999986


Q ss_pred             CCchhHHHHHhcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHH
Q 008940          152 TDSDCKVHIVQRGAVRPLIEMLQ------SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA  225 (548)
Q Consensus       152 ~~~~~~~~~~~~g~v~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a  225 (548)
                      .++...     ....+.|..+++      +.+..+...++.++..+...+    .+. ..++..|..++.+++++++..|
T Consensus       264 ~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~a  333 (618)
T 1w63_A          264 NDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVA  333 (618)
T ss_dssp             TCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHH
T ss_pred             CCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHH
Confidence            654322     234455555542      234578888888888875422    111 1356778888988899999999


Q ss_pred             HHHHHhcccCCcchHHHHHh---cCcccccccchhhhhhhHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhhhhhhhh
Q 008940          226 AFALYGLADNEDNVADFIRV---GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR----VLNHLLYLMRVAEKGVQRR  298 (548)
Q Consensus       226 ~~~L~~l~~~~~~~~~~~~~---g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~ll~~~~~~~~~~  298 (548)
                      +.+|..++.....   +++.   .++..+-      +........+++.+..+.+..    ++..++..+.+.+.+++..
T Consensus       334 L~~L~~i~~~~p~---~~~~~~~~i~~~l~------d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~  404 (618)
T 1w63_A          334 LTSLLKTVQTDHN---AVQRHRSTIVDCLK------DLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKAD  404 (618)
T ss_dssp             HHHHHHHHHHHHH---HHGGGHHHHHHGGG------SSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHhhCHH---HHHHHHHHHHHHcc------CCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHH
Confidence            9999998754211   1110   0111111      111222334444444444432    6777777787788888888


Q ss_pred             HHHHhhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          299 VALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       299 a~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      ++.+|+.++.. ++..     ...++.|++++......++..+...+..+..+
T Consensus       405 ~v~~I~~la~k~~~~~-----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~  452 (618)
T 1w63_A          405 CASGIFLAAEKYAPSK-----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN  452 (618)
T ss_dssp             HHHHHHHHHHSSCCCH-----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccH-----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence            88888888753 1211     12467888888877677777788888887765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.16  E-value=1.4e-09  Score=113.75  Aligned_cols=309  Identities=12%  Similarity=0.109  Sum_probs=209.8

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +.+|.++..|+.++.++...+|+...     +.++.+.+++.+.++.++..|+.+|..++..+++....+  ...++.++
T Consensus       153 ~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~  225 (618)
T 1w63_A          153 TSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLV  225 (618)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHH
Confidence            45689999999999999987776332     678888999999999999999999999997544432222  24678888


Q ss_pred             HHhcc---------------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc------CChHHHHHHHHH
Q 008940           87 LMLRS---------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS------CCSESQREAALL  145 (548)
Q Consensus        87 ~ll~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~a~~~  145 (548)
                      .+|.+               .++-.+...+++|+.++..++...+     ...+.|..++..      .+..+...|+++
T Consensus       226 ~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~  300 (618)
T 1w63_A          226 RILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLT  300 (618)
T ss_dssp             HHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            77753               4778888999999999877665432     345555555532      235688888888


Q ss_pred             HHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHH
Q 008940          146 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA  225 (548)
Q Consensus       146 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a  225 (548)
                      +..+.. .+..+     ..+++.|..++.++++.++..++.+|..++...+.   ... .....++..+.+++..++..+
T Consensus       301 i~~l~~-~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~-~~~~~i~~~l~d~d~~Ir~~a  370 (618)
T 1w63_A          301 IMDIKS-ESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ-RHRSTIVDCLKDLDVSIKRRA  370 (618)
T ss_dssp             HHHSCC-CHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG-GGHHHHHHGGGSSCHHHHHHH
T ss_pred             HHhcCC-CHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH-HHHHHHHHHccCCChhHHHHH
Confidence            888743 22211     13567888889988999999999999999865332   222 245678888999999999999


Q ss_pred             HHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHH---HHHHHHHHhh---hhhhhHHHHHHHHhhhhhhhhhH
Q 008940          226 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVA---KTLKRLEEKI---HGRVLNHLLYLMRVAEKGVQRRV  299 (548)
Q Consensus       226 ~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~L~~ll~~~~~~~~~~a  299 (548)
                      +.+|..++..... ..++     +.|.....  ........   ..+..+....   ...+++.++.++......++..+
T Consensus       371 lelL~~l~~~~nv-~~iv-----~eL~~~l~--~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~  442 (618)
T 1w63_A          371 MELSFALVNGNNI-RGMM-----KELLYFLD--SCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDA  442 (618)
T ss_dssp             HHHHHHHCCSSST-HHHH-----HHHHHHHH--HCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSH
T ss_pred             HHHHHHHcccccH-HHHH-----HHHHHHHH--hCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHH
Confidence            9999999875543 2222     11111000  01111122   2233333322   12378889999998777788888


Q ss_pred             HHHhhhccC-CCccceeeecCCchHHHHHhhcC--CCCccchhhHHHHHHHhhh
Q 008940          300 ALALAHLCS-PDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       300 ~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~  350 (548)
                      ...+..+.. .++.+.     .+++.|+..+.+  .+......++|.|+..+..
T Consensus       443 ~~~l~~ii~~~p~l~~-----~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~  491 (618)
T 1w63_A          443 VPNLIQLITNSVEMHA-----YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL  491 (618)
T ss_dssp             HHHHHHHHHHSCSTHH-----HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcChhHHH-----HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence            888888864 343332     356778888774  3344556789999988764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.16  E-value=4.3e-10  Score=123.50  Aligned_cols=306  Identities=13%  Similarity=0.090  Sum_probs=206.7

Q ss_pred             hhHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccCcchhh-HhhhcCChHH
Q 008940            9 VNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPT   84 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~   84 (548)
                      ++.++..++.++..++..- ++.-.. .-...++.+...+.++  +..+|..|+.++..++..-..+.. ......+++.
T Consensus       143 ~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~  221 (876)
T 1qgr_A          143 TEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV  221 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            5688999999999998542 221111 1124566677777776  689999999999998753222111 1111125667


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch---------
Q 008940           85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD---------  155 (548)
Q Consensus        85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---------  155 (548)
                      +...+.+++.+++..++.+|..++...+..-...+...+++.+...+.+.++.++..++..+.+++.....         
T Consensus       222 l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~  301 (876)
T 1qgr_A          222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA  301 (876)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhcccc
Confidence            77777788999999999999999876554323333346788888888888899999999988888743100         


Q ss_pred             -----------hHHHHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC
Q 008940          156 -----------CKVHIVQRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK  217 (548)
Q Consensus       156 -----------~~~~~~~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~  217 (548)
                                 ....-.-..+++.++..+..       ++..+|..+..+|..++.....  .+. ...++.+...+.+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~  378 (876)
T 1qgr_A          302 EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNP  378 (876)
T ss_dssp             HHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCS
T ss_pred             ccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCC
Confidence                       00000012356677777752       3567999999999999865431  121 23455566777888


Q ss_pred             ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhh
Q 008940          218 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQR  297 (548)
Q Consensus       218 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~  297 (548)
                      ++.++..++.+++.++..... ..+                              . ..-..+++.++..+.++++.+|.
T Consensus       379 ~~~~r~~a~~~l~~i~~~~~~-~~~------------------------------~-~~~~~~l~~l~~~l~d~~~~vr~  426 (876)
T 1qgr_A          379 DWRYRDAAVMAFGCILEGPEP-SQL------------------------------K-PLVIQAMPTLIELMKDPSVVVRD  426 (876)
T ss_dssp             SHHHHHHHHHHHHHTSSSSCH-HHH------------------------------H-HHHHHHHHHHHHHHTCSSHHHHH
T ss_pred             ChHHHHHHHHHHHHHHcCCCH-HHH------------------------------H-HHHHHHHHHHHHHhCCCCHHHHH
Confidence            999999999999999865321 000                              0 01123688888999889999999


Q ss_pred             hHHHHhhhccCCCccc--eeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          298 RVALALAHLCSPDDQR--TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       298 ~a~~aL~~l~~~~~~~--~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      .|+++|++++..-...  ..-.-...++.|+..+.++ +.++..++++|.+++...
T Consensus       427 ~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~  481 (876)
T 1qgr_A          427 TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAA  481 (876)
T ss_dssp             HHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence            9999999997642211  0001125677888888774 888999999999999764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.12  E-value=5.8e-10  Score=122.26  Aligned_cols=335  Identities=14%  Similarity=0.119  Sum_probs=208.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhh-----------------HHHHHhcCCchHHHHhhcc-------CCHHHHHHHHHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSI-----------------KTRVRMEGGIPPLVELLEF-------TDTKVQRAAAGALR   63 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~-----------------~~~i~~~g~i~~L~~ll~~-------~~~~v~~~a~~~L~   63 (548)
                      ..++++..|+..+..++......                 -.... ..+++.++..+..       ++..++..+..+|.
T Consensus       278 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~  356 (861)
T 2bpt_A          278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQ  356 (861)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHH
Confidence            34688999999999888532110                 01111 3456777777764       23579999999999


Q ss_pred             HhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhhhcCChHHHHHH
Q 008940           64 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREA  142 (548)
Q Consensus        64 ~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a  142 (548)
                      .++....   ..+. ..+++.+...+.++++.+|+.++.+++.++.... ..-.... ..+++.++..+.++++.++..+
T Consensus       357 ~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a  431 (861)
T 2bpt_A          357 LFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETT  431 (861)
T ss_dssp             HHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHH
Confidence            9986322   1111 1245666677778899999999999999987643 2212222 2478889999999999999999


Q ss_pred             HHHHHHhhcCCchhH-HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc----c-hhhhHhcCChHHHHHhhcC
Q 008940          143 ALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH----N-QAGIAHNGGLVPLLKLLDS  216 (548)
Q Consensus       143 ~~~L~~l~~~~~~~~-~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~-~~~~~~~~~l~~L~~ll~~  216 (548)
                      +++++.++....... ..-.-..+++.++..+.++ +.++..++++|.+++....    . -.... ...++.++..+.+
T Consensus       432 ~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~  509 (861)
T 2bpt_A          432 AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANR  509 (861)
T ss_dssp             HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhC
Confidence            999999985421100 0001124677888888776 8999999999999986432    1 11111 2345667778875


Q ss_pred             CC--hhHHHHHHHHHHhcccCCcc-hHHHHHhcCcccccccchhh-------------hhhhHH---HHHHHHHHHHhhh
Q 008940          217 KN--GSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGEFIV-------------QATKDC---VAKTLKRLEEKIH  277 (548)
Q Consensus       217 ~~--~~v~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~~~~~~-------------~~~~~~---~~~~~~~~~~~~~  277 (548)
                      .+  +.++..++.++..++..... ...... ..++.+.+.....             ......   ...++..+.....
T Consensus       510 ~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~  588 (861)
T 2bpt_A          510 IDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP  588 (861)
T ss_dssp             SCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             cCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            43  78899999999999753322 111111 1222222111000             000111   1122222222211


Q ss_pred             -------hhhhHHHHHHHHhhhh-hhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          278 -------GRVLNHLLYLMRVAEK-GVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       278 -------~~~~~~L~~ll~~~~~-~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                             ..+++.++..+.+.+. .++..++.+++.++........-.-...++.|...+.++++.++..++.++..++.
T Consensus       589 ~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~  668 (861)
T 2bpt_A          589 SSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN  668 (861)
T ss_dssp             GGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence                   2356667777777666 89999999999987542211111112467888888888888999999999998887


Q ss_pred             hc
Q 008940          350 KA  351 (548)
Q Consensus       350 ~~  351 (548)
                      ..
T Consensus       669 ~~  670 (861)
T 2bpt_A          669 SL  670 (861)
T ss_dssp             HT
T ss_pred             Hh
Confidence            53

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=99.11  E-value=2.7e-11  Score=101.72  Aligned_cols=108  Identities=15%  Similarity=0.279  Sum_probs=60.7

Q ss_pred             EEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCc------------------
Q 008940          383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------  443 (548)
Q Consensus       383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------------  443 (548)
                      +++.. +|+.|.+|+.+ +..|++|++||...   +....|+++++++.+++.+++|+|+..                  
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~---~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~   81 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD---CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDD   81 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----------------------
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc---CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccc
Confidence            44443 68999999998 88999999999764   234589999999999999999999876                  


Q ss_pred             ---------cccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcC---CHhhHHHHHHHHHHcC
Q 008940          444 ---------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSEAFH  494 (548)
Q Consensus       444 ---------~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l---~~~n~~~~~~~a~~~~  494 (548)
                               +.++.+++.+|+.||++|+++.|.++|+.++...+   +++.+-.++.....+.
T Consensus        82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t  144 (160)
T 2p1m_A           82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT  144 (160)
T ss_dssp             -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCC
T ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence                     35677889999999999999999999999999888   6666666555544443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.10  E-value=2.8e-10  Score=120.21  Aligned_cols=194  Identities=15%  Similarity=0.164  Sum_probs=152.2

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH-HHhccCChHHHHHHHHHHHHhhcC-ChhHH
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHS-SPNIK  115 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv-~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~  115 (548)
                      ..+.++++.|+++++..|..|+.+|.+++. ++..+..+...|++..++ .+|.+++.++|..|+++|+||+.+ .++.+
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            456678888999999999999999999997 789999999999988765 578899999999999999999865 47888


Q ss_pred             HHHHhcCChHHHHHhhhcCC---------------------hHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC
Q 008940          116 KEVLAAGALQPVIGLLSSCC---------------------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ  174 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~~~~---------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~  174 (548)
                      ..+...|+++.|..++....                     .++...++.+|++||..+......+...+.++.|+..|.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            99999999999999886410                     124456778999999888888888888899999999985


Q ss_pred             C---CCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHH---HHHhhcCCChhHHHHHHHHHHhcc
Q 008940          175 S---PDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVP---LLKLLDSKNGSLQHNAAFALYGLA  233 (548)
Q Consensus       175 ~---~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~---L~~ll~~~~~~v~~~a~~~L~~l~  233 (548)
                      +   ...+++..++.+|.+++.+... ...+...+....   +..+ ...+...+..++++|.|+.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence            4   2467999999999999987655 344445444332   2222 2334445667888888873

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.09  E-value=8.4e-10  Score=120.97  Aligned_cols=335  Identities=13%  Similarity=0.146  Sum_probs=205.4

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcc-----------------
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-----------------   71 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----------------   71 (548)
                      .++++..++.+|..++...+..-.......+++.+...+.+.+..++..|+..+..++.....                 
T Consensus       237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (861)
T 2bpt_A          237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN  316 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence            467888999999999864433211122125566677778888899999999999998863110                 


Q ss_pred             hhhHhhhcCChHHHHHHhcc-------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHH
Q 008940           72 NKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL  144 (548)
Q Consensus        72 ~~~~~~~~g~i~~Lv~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~  144 (548)
                      ...... ..+++.++..+.+       +++.++..+..+|..++...++   .+. ...++.+...+.+.+..+++.+++
T Consensus       317 ~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~  391 (861)
T 2bpt_A          317 FALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAVM  391 (861)
T ss_dssp             HHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHHH
Confidence            001111 2356777777763       2357999999999999753221   111 134667777778888999999999


Q ss_pred             HHHHhhcCCc-hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch--hhhHhcCChHHHHHhhcCCChhH
Q 008940          145 LLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSL  221 (548)
Q Consensus       145 ~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~v  221 (548)
                      +++.++.+.. ....... ..+++.++..+.++++.+|..+++++++++......  ..-.-...++.++..+.+. +.+
T Consensus       392 ~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v  469 (861)
T 2bpt_A          392 AFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKV  469 (861)
T ss_dssp             HHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHH
T ss_pred             HHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHH
Confidence            9999986543 2222222 357888999999999999999999999998543211  0001123466777777765 899


Q ss_pred             HHHHHHHHHhcccCC-----cchHHHHHhcCcccccccchhhh---hhhHHHHHHHHHHHHhhh-------hhhhHHHHH
Q 008940          222 QHNAAFALYGLADNE-----DNVADFIRVGGVQKLQDGEFIVQ---ATKDCVAKTLKRLEEKIH-------GRVLNHLLY  286 (548)
Q Consensus       222 ~~~a~~~L~~l~~~~-----~~~~~~~~~g~i~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~L~~  286 (548)
                      +..++++|.+++..-     ....... ..+++.|.......+   ........++..+.....       ..+++.++.
T Consensus       470 ~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~  548 (861)
T 2bpt_A          470 ATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMD  548 (861)
T ss_dssp             HHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHH
Confidence            999999999987531     1111111 111222221111001   011112222222222211       134555666


Q ss_pred             HHHhh---------------hhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCC-ccchhhHHHHHHHhhh
Q 008940          287 LMRVA---------------EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNP-KQQLDGAVALFKLANK  350 (548)
Q Consensus       287 ll~~~---------------~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~  350 (548)
                      .+...               ...++..++.+|.+++..-...-.-.-...++.+.+.+++.+. .++..+..++..++..
T Consensus       549 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~  628 (861)
T 2bpt_A          549 KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS  628 (861)
T ss_dssp             HHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHH
Confidence            66532               4567888999999987532211111112467778888888777 8899999999998875


Q ss_pred             c
Q 008940          351 A  351 (548)
Q Consensus       351 ~  351 (548)
                      .
T Consensus       629 ~  629 (861)
T 2bpt_A          629 L  629 (861)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.09  E-value=4.3e-10  Score=123.55  Aligned_cols=298  Identities=12%  Similarity=0.047  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhc
Q 008940           14 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR   90 (548)
Q Consensus        14 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~   90 (548)
                      ..++.++..++........   -...++.|++.+.++  ++.++..++.++..++... ++..... -..+++.+...+.
T Consensus       107 ~~~~~~l~~i~~~~~~~~~---w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~  182 (876)
T 1qgr_A          107 SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMR  182 (876)
T ss_dssp             CHHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhCcccc---cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH-HHHHHHHHHHhhc
Confidence            5666667776643111000   124567888888888  8999999999999998632 2211111 1235666777777


Q ss_pred             cC--ChHHHHHHHHHHHHhhcCChhH-HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940           91 SE--DSAIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR  167 (548)
Q Consensus        91 ~~--~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  167 (548)
                      ++  +..+|..++.++.+++..-... .........++.+...+.+.+.+++..++.+|..++...+..........+++
T Consensus       183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~  262 (876)
T 1qgr_A          183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA  262 (876)
T ss_dssp             TTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            66  6899999999999987542221 11111112567777778888899999999999999866554433334447888


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCcc----------------h--hhhH---hcCChHHHHHhhcC-------CCh
Q 008940          168 PLIEMLQSPDVQLREMSAFALGRLAQDMHN----------------Q--AGIA---HNGGLVPLLKLLDS-------KNG  219 (548)
Q Consensus       168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------------~--~~~~---~~~~l~~L~~ll~~-------~~~  219 (548)
                      .++..+.+.++.++..++..+.+++.....                +  ....   -...++.+++.+..       .+.
T Consensus       263 ~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~  342 (876)
T 1qgr_A          263 ITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW  342 (876)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccccc
Confidence            888888888999999999999988754210                0  0000   01223445555532       234


Q ss_pred             hHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940          220 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV  299 (548)
Q Consensus       220 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a  299 (548)
                      .++..+..+|..++.....                                    ..-..+++.+...+.+.++.+|..|
T Consensus       343 ~~r~~a~~~l~~l~~~~~~------------------------------------~~~~~~l~~l~~~l~~~~~~~r~~a  386 (876)
T 1qgr_A          343 NPCKAAGVCLMLLATCCED------------------------------------DIVPHVLPFIKEHIKNPDWRYRDAA  386 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHGG------------------------------------GGHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcH------------------------------------hhHHHHHHHHHHHccCCChHHHHHH
Confidence            5666666666665432110                                    0001245556666677889999999


Q ss_pred             HHHhhhccCCCc-c-ceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          300 ALALAHLCSPDD-Q-RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       300 ~~aL~~l~~~~~-~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      +++++.++.+.. . -.. .-.+.++.++..+.++++.+|..|++++.+++....
T Consensus       387 ~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          387 VMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence            999999987543 1 111 113578899999999999999999999999998643

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.04  E-value=1.4e-09  Score=110.02  Aligned_cols=265  Identities=12%  Similarity=0.087  Sum_probs=179.1

Q ss_pred             hhHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccCcchhh-HhhhcCChHH
Q 008940            9 VNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPT   84 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~   84 (548)
                      ++.++..|+.+|..++... +..-.... ..+++.+...++++  ++.+|..|+.++.++...-.++.. .....-+++.
T Consensus       143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~  221 (462)
T 1ibr_B          143 TEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV  221 (462)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            5678999999999999643 22211111 24667888888887  799999999999987642111111 0011113556


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchh--------
Q 008940           85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC--------  156 (548)
Q Consensus        85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--------  156 (548)
                      +...+.+++++++..++++|..++...+..-......++++.++..+.+.+++++..++..+..++......        
T Consensus       222 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~  301 (462)
T 1ibr_B          222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA  301 (462)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            666777889999999999999998655432111111156777788888888999999999998887431000        


Q ss_pred             ---------HHHHH---hcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC
Q 008940          157 ---------KVHIV---QRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK  217 (548)
Q Consensus       157 ---------~~~~~---~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~  217 (548)
                               ...+.   -..++|.++..+..       ++..++..|+.+|..++...+.  .+. ...++.+...+.+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~  378 (462)
T 1ibr_B          302 EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNP  378 (462)
T ss_dssp             CSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCS
T ss_pred             ccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCC
Confidence                     00011   12356667677753       2457899999999999865541  222 24566677888889


Q ss_pred             ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhh
Q 008940          218 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQR  297 (548)
Q Consensus       218 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~  297 (548)
                      ++.++..++.+|+.++......       .+..                         .-..+++.++.++.++++.+|.
T Consensus       379 ~~~~r~aal~~l~~l~~~~~~~-------~~~~-------------------------~l~~~~~~l~~~l~d~~~~Vr~  426 (462)
T 1ibr_B          379 DWRYRDAAVMAFGCILEGPEPS-------QLKP-------------------------LVIQAMPTLIELMKDPSVVVRD  426 (462)
T ss_dssp             SHHHHHHHHHHHHHTSSSSCTT-------TTCT-------------------------TTTTHHHHHHHGGGCSCHHHHH
T ss_pred             ChHHHHHHHHHHHHHhcCCcHH-------HHHH-------------------------HHHHHHHHHHHHhcCCCHHHHH
Confidence            9999999999999998643210       0000                         0134788899999999999999


Q ss_pred             hHHHHhhhccCC
Q 008940          298 RVALALAHLCSP  309 (548)
Q Consensus       298 ~a~~aL~~l~~~  309 (548)
                      .|+++|++++..
T Consensus       427 ~a~~~l~~~~~~  438 (462)
T 1ibr_B          427 TAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.00  E-value=4.3e-09  Score=119.68  Aligned_cols=271  Identities=14%  Similarity=0.095  Sum_probs=190.6

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      ++.|++-+.++|+.+|..|...|.+....+......-....+++.+++.+.++++.+|..|+.+|+.++...++  ..  
T Consensus         8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~--   83 (1230)
T 1u6g_C            8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ--   83 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH--
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH--
Confidence            45677778889999999999999887653211111111124677888889999999999999999999865443  11  


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH-----HHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhc
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-----VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~  193 (548)
                      ...+++.++..+.++++.+|..++.+|..++.......     ..-.-..++|.|+..+. ++++.++..++.++..++.
T Consensus        84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~  163 (1230)
T 1u6g_C           84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  163 (1230)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            12357788888888889999999999999885433220     11122457899999998 5888999999999999985


Q ss_pred             CCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHH
Q 008940          194 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE  273 (548)
Q Consensus       194 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~  273 (548)
                      .....-.-.....++.+...+.++++.++..++.+|..++......  +     +                         
T Consensus       164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-----~-------------------------  211 (1230)
T 1u6g_C          164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-----F-------------------------  211 (1230)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----------C-------------------------
T ss_pred             HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-----H-------------------------
Confidence            3221100011235666778888888999999999999998643221  0     0                         


Q ss_pred             HhhhhhhhHHHHHHHHhh-hhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          274 EKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       274 ~~~~~~~~~~L~~ll~~~-~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                          ..+++.++..+.+. +..+|..++.+++.++.....+..-.-...++.+++.+.+.++.+|..++.++..++..
T Consensus       212 ----~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          212 ----VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             ----TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence                12566777777664 35788899999999875322111112246889999999999999999999999998875

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.90  E-value=5.2e-09  Score=110.51  Aligned_cols=184  Identities=15%  Similarity=0.100  Sum_probs=147.1

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHH-HhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPT   84 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~   84 (548)
                      +..++.|..||.+|.+++ .++..+..+...|++..++ .+|.+++.+||..|+.+|++|+.. .++....+...|++++
T Consensus        45 S~~~~~r~~A~~al~~l~-~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~  123 (684)
T 4gmo_A           45 SPDAKSRTTAAGAIANIV-QDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTA  123 (684)
T ss_dssp             SSCCSHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH-cCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHH
Confidence            355788999999999999 5889999999999998765 578889999999999999999963 4677888999999999


Q ss_pred             HHHHhccCC---------------------hHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC---ChHHHH
Q 008940           85 LILMLRSED---------------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---CSESQR  140 (548)
Q Consensus        85 Lv~ll~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~  140 (548)
                      |..+++...                     .++...++.+|++|+..+.+..+.+...++++.++..+.+.   ..+++.
T Consensus       124 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~  203 (684)
T 4gmo_A          124 IEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYE  203 (684)
T ss_dssp             HHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHH
T ss_pred             HHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHH
Confidence            998885211                     13455678899999988888888888999999999988543   357999


Q ss_pred             HHHHHHHHhhcCCchhHHHHHhcCChH---HHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940          141 EAALLLGQFAATDSDCKVHIVQRGAVR---PLIEMLQSPDVQLREMSAFALGRLA  192 (548)
Q Consensus       141 ~a~~~L~~l~~~~~~~~~~~~~~g~v~---~L~~ll~~~~~~v~~~a~~~L~~l~  192 (548)
                      .++.+|..++.+++.....+.+.+...   .++.+.++ +...+..+++.|.|+.
T Consensus       204 ~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          204 EAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence            999999999998888888787766543   33333333 3345777889999975

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.87  E-value=8.2e-08  Score=100.01  Aligned_cols=290  Identities=13%  Similarity=0.087  Sum_probs=194.3

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      .+....++++.+++...+..+.-++..++..+++....     ++..+.+-+.++++.++..|+++|+++..  ++..+ 
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-  145 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-  145 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-
Confidence            35677888999999999999999999999765543322     35567777889999999999999999953  44322 


Q ss_pred             HHhcCChHHHHHhh--hcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940          118 VLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       118 ~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  195 (548)
                          ..++.+.+++  .+.++-+++.|+.++.++...+++..   ...+.++.+..+|.+.++.++..|+.++..++...
T Consensus       146 ----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          146 ----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             ----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence                4678899999  88899999999999999987655432   22489999999999999999999999999998654


Q ss_pred             cchhhhHhcCChHHHH----HhhcCC-------------ChhHHHHHHHHHHhcccCC--cchHHHHHhcCcccccccch
Q 008940          196 HNQAGIAHNGGLVPLL----KLLDSK-------------NGSLQHNAAFALYGLADNE--DNVADFIRVGGVQKLQDGEF  256 (548)
Q Consensus       196 ~~~~~~~~~~~l~~L~----~ll~~~-------------~~~v~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~~~~  256 (548)
                      +..  +  ...++.++    +++..+             ++-.+...+..|..++..+  +....+.+  .++.++....
T Consensus       219 ~~~--~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~  292 (621)
T 2vgl_A          219 PEE--F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQ  292 (621)
T ss_dssp             HHH--H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHH
T ss_pred             hHH--H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhc
Confidence            321  1  12233333    333221             5678888888888887532  22222221  1111110000


Q ss_pred             ------hhhh---hhHHHHHHHHHHHHhh-----hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCch
Q 008940          257 ------IVQA---TKDCVAKTLKRLEEKI-----HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL  322 (548)
Q Consensus       257 ------~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i  322 (548)
                            ..+.   .....-++...+-...     -..++..|..++.++++++|..|+.+|..++........+  ....
T Consensus       293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~~~  370 (621)
T 2vgl_A          293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KTHI  370 (621)
T ss_dssp             SCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HTTH
T ss_pred             cCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HHHH
Confidence                  0000   0011111221111111     1236677778888889999999999999998654211112  2346


Q ss_pred             HHHHHhhc-CCCCccchhhHHHHHHHhhh
Q 008940          323 ELLLGLLG-STNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       323 ~~L~~ll~-~~~~~v~~~a~~~L~~l~~~  350 (548)
                      ..++..+. +++..++..+...|..++..
T Consensus       371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          371 ETVINALKTERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence            77778888 88888999999999999865

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.84  E-value=1.6e-07  Score=80.76  Aligned_cols=187  Identities=20%  Similarity=0.155  Sum_probs=148.4

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      .+..|..+|.+.|+.++..++.+|..+...-+.......-...++.++.++.++|..+...|+++|..|-.+.+-..+.+
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y  113 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF  113 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence            45678999999999999999999999997433433333334589999999999999999999999999987765433333


Q ss_pred             HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940          119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  198 (548)
Q Consensus       119 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  198 (548)
                      ..  .+..+..++.++++-.+..++..++.+-.. ...+      +++..+..++.+.+++++..+..+|.+++......
T Consensus       114 ~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~-~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          114 LK--AAKTLVSLLESPDDMMRIETIDVLSKLQPL-EDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             HH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS-CCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             HH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcc-cchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            33  466888889999999999999999999322 2222      36688999999999999999999999999765443


Q ss_pred             hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940          199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  236 (548)
                      ..+  .+.+..+-.++++.|+.++..|+.++..+...+
T Consensus       185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            322  246667889999999999999999999997754

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.77  E-value=2.2e-07  Score=90.00  Aligned_cols=312  Identities=14%  Similarity=0.172  Sum_probs=193.5

Q ss_pred             cCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCc---chhhHhhhcCC-hHHHHH-HhccCChHHHHHHHHHHHHhhcC
Q 008940           37 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKND---ENKNQIVECNA-LPTLIL-MLRSEDSAIHYEAVGVIGNLVHS  110 (548)
Q Consensus        37 ~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~-i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~  110 (548)
                      ..++..++.+|+. .+.++....+..+..+...++   .....+.+..- ...+.. ++..+++-....+..++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            3456788898875 568899999999999988655   33333333322 222333 33344455556666666666433


Q ss_pred             ChhHHHHHHhcCChH--HHHHhhhcC-ChHHHHHHHHHHHHhhcCCchhHHHHHhcC--ChHHHHHhhCC----------
Q 008940          111 SPNIKKEVLAAGALQ--PVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRG--AVRPLIEMLQS----------  175 (548)
Q Consensus       111 ~~~~~~~~~~~g~i~--~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~v~~L~~ll~~----------  175 (548)
                      .+...+..  ...+.  .++..+... +...+..++.+|..|... +..|..+.+.+  .++.++..++.          
T Consensus       156 ~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          156 GLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             CCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            22211110  11122  345555553 345566788889888765 67787776532  46666543321          


Q ss_pred             -----C--CHHHHHHHHHHHHHhhcCCcchhhhHhcCCh--HHHHHhhcC-CChhHHHHHHHHHHhcccCCc-c----hH
Q 008940          176 -----P--DVQLREMSAFALGRLAQDMHNQAGIAHNGGL--VPLLKLLDS-KNGSLQHNAAFALYGLADNED-N----VA  240 (548)
Q Consensus       176 -----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l--~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-~----~~  240 (548)
                           +  ..+++..++.++|-|+..++....+...+..  +.|+..++. ..+++.+-++.+|.|+..... .    ..
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                 1  3467899999999999988776666655532  345666664 468899999999999976541 1    12


Q ss_pred             H-HHHhcCcccccc---cchh---hhhhh--------------------------------------HHHHHHHHHHHHh
Q 008940          241 D-FIRVGGVQKLQD---GEFI---VQATK--------------------------------------DCVAKTLKRLEEK  275 (548)
Q Consensus       241 ~-~~~~g~i~~L~~---~~~~---~~~~~--------------------------------------~~~~~~~~~~~~~  275 (548)
                      . +...++++.+..   ..+.   +..+-                                      .-|.++..++.+ 
T Consensus       313 ~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e-  391 (480)
T 1ho8_A          313 QLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK-  391 (480)
T ss_dssp             HHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS-
T ss_pred             HHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh-
Confidence            2 222333332211   0010   00000                                      001111111111 


Q ss_pred             hhhhhhHHHHHHHHh----------hhhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHH
Q 008940          276 IHGRVLNHLLYLMRV----------AEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL  344 (548)
Q Consensus       276 ~~~~~~~~L~~ll~~----------~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  344 (548)
                      -+..++..|+.+|.+          .++.+..-||.-|+.+++ .|.+|..+-+.|+-..+.+|+.++|++||..|..++
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av  471 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT  471 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence            223488999999984          478889999999999987 477888888889999999999999999999999999


Q ss_pred             HHHhhhcc
Q 008940          345 FKLANKAT  352 (548)
Q Consensus       345 ~~l~~~~~  352 (548)
                      ..+..+.|
T Consensus       472 Qklm~~~~  479 (480)
T 1ho8_A          472 QAIIGYTF  479 (480)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhcC
Confidence            99876643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.77  E-value=2.2e-07  Score=96.73  Aligned_cols=287  Identities=17%  Similarity=0.215  Sum_probs=195.9

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      .+.+|-++..|+-++.++.+.+|+...   ..+.++.+.++|.+.++.++..|+.++..++..++........ ..++.|
T Consensus       158 ~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~-~~~~~L  233 (621)
T 2vgl_A          158 GDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS-LAVSRL  233 (621)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHH-HHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHH
Confidence            355789999999999999987665332   2478899999999999999999999999999755542111111 122333


Q ss_pred             HHHhccC-------------ChHHHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhhh---------cCC--hHHHH
Q 008940           86 ILMLRSE-------------DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLS---------SCC--SESQR  140 (548)
Q Consensus        86 v~ll~~~-------------~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~---------~~~--~~~~~  140 (548)
                      -+++..+             ++-.+...+++|..++.. +++.++.+.+  .++.++..+.         +.+  ..+..
T Consensus       234 ~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~  311 (621)
T 2vgl_A          234 SRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLF  311 (621)
T ss_dssp             HHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHH
Confidence            3343321             567888899999998763 3455444433  3333333221         112  26778


Q ss_pred             HHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc-CCCh
Q 008940          141 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNG  219 (548)
Q Consensus       141 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~  219 (548)
                      .++.++..+. ..++...     .+++.|..++.++++.++..++.+|..++...+....+  ......++..+. +++.
T Consensus       312 ea~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~~~~~i~~~L~~d~d~  383 (621)
T 2vgl_A          312 EAISLIIHHD-SEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KTHIETVINALKTERDV  383 (621)
T ss_dssp             HHHHHHHHHC-CCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HTTHHHHHHHHTTCCCH
T ss_pred             HHHHHHHhcC-CcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HHHHHHHHHHhccCCCH
Confidence            8888888884 2222222     35678888999899999999999999998765422222  245667888888 8899


Q ss_pred             hHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940          220 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV  299 (548)
Q Consensus       220 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a  299 (548)
                      .++..++.+|..++... +..                                      .++..|...+.+.+.+++..+
T Consensus       384 ~Ir~~aL~lL~~l~~~~-Nv~--------------------------------------~Iv~eL~~yl~~~d~~~~~~~  424 (621)
T 2vgl_A          384 SVRQRAVDLLYAMCDRS-NAQ--------------------------------------QIVAEMLSYLETADYSIREEI  424 (621)
T ss_dssp             HHHHHHHHHHHHHCCHH-HHH--------------------------------------HHHHHHHHHHHHCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHcChh-hHH--------------------------------------HHHHHHHHHHHhcCHHHHHHH
Confidence            99999999999998543 222                                      256677788888888899999


Q ss_pred             HHHhhhccCC-CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          300 ALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       300 ~~aL~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      ..+++.++.. +...     .-.+..|++++......+...+...+..+...
T Consensus       425 v~~I~~la~k~~~~~-----~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~  471 (621)
T 2vgl_A          425 VLKVAILAEKYAVDY-----TWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN  471 (621)
T ss_dssp             HHHHHHHHHHHCSST-----HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhcCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence            9999888742 1111     23467778888765556767777777777654

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.76  E-value=3.6e-08  Score=74.90  Aligned_cols=79  Identities=19%  Similarity=0.376  Sum_probs=67.5

Q ss_pred             EEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCc--------------cccc
Q 008940          383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS--------------VDVT  447 (548)
Q Consensus       383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~--------------~~~~  447 (548)
                      +++.. +|+.|.+++.+ +..|++++.|+..++ ++....|+++++++.+++.+++|+|...              ..++
T Consensus         6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd   83 (99)
T 1hv2_A            6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP   83 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred             EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCC
Confidence            55555 78999999997 889999999998766 5666789999999999999999998643              2467


Q ss_pred             hHhHHHHHHHHHHhCh
Q 008940          448 LDIAQDLLRAADQYLL  463 (548)
Q Consensus       448 ~~~~~~ll~~a~~~~~  463 (548)
                      .+.+.+|+.||+++++
T Consensus        84 ~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           84 TEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            8899999999999975

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.75  E-value=3.1e-07  Score=79.00  Aligned_cols=189  Identities=14%  Similarity=0.117  Sum_probs=150.7

Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHH
Q 008940           80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH  159 (548)
Q Consensus        80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  159 (548)
                      +.+..|..+|.+.|+.++..++.+|..+....+.......-...++.++.++.+.+..+.-.|..+|..+..+.+-....
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            46888999999999999999999999998765554444444568999999999999999999999999999877666665


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcch
Q 008940          160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV  239 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  239 (548)
                      +..  ++..+.+++.++++-++..++..++.+--....+      ..+..+.+++.+.+..++..+..++.+++...+..
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            554  7788999999999999999999999993222222      23567888999999999999999999998654321


Q ss_pred             HHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc
Q 008940          240 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD  311 (548)
Q Consensus       240 ~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~  311 (548)
                      ..      +                             .+++..+-.++++.|+.++..|+.++-.+...+-
T Consensus       185 ~i------~-----------------------------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi  221 (265)
T 3b2a_A          185 GH------L-----------------------------TLILDEIPSLLQNDNEFIVELALDVLEKALSFPL  221 (265)
T ss_dssp             CC------G-----------------------------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCC
T ss_pred             HH------H-----------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcc
Confidence            11      1                             1245556688899999999999999999987643

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.73  E-value=2.3e-07  Score=105.49  Aligned_cols=303  Identities=15%  Similarity=0.100  Sum_probs=197.1

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcc----------------hh
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE----------------NK   73 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------------~~   73 (548)
                      ..+++.|+.++..++...++.-..+. ...++.++..+.+.++.+|..++.++..+......                ..
T Consensus       347 ~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  425 (1230)
T 1u6g_C          347 WKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPL  425 (1230)
T ss_dssp             THHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHH
T ss_pred             HHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchH
Confidence            46788999999999864332222222 35678888888888899999999998877642100                01


Q ss_pred             hHh--hhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCCh--HHHHHHHHHHHHh
Q 008940           74 NQI--VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQF  149 (548)
Q Consensus        74 ~~~--~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l  149 (548)
                      ..+  .-..+++.+.+.++++++.+|..++.+|+.++...+..-.. .-..+++.+...+.+..+  .++..++..+..+
T Consensus       426 ~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~  504 (1230)
T 1u6g_C          426 TMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVI  504 (1230)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence            111  11224555666688999999999999999987653321111 012457788888887764  7888888888888


Q ss_pred             hcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-------hhhhHhcCChHHHHHhh--cCCChh
Q 008940          150 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-------QAGIAHNGGLVPLLKLL--DSKNGS  220 (548)
Q Consensus       150 ~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~l~~L~~ll--~~~~~~  220 (548)
                      ..........-.-..+++.++..+.+.+..++..++.++..++.....       .-.-.....++.++..+  .+.++.
T Consensus       505 ~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~  584 (1230)
T 1u6g_C          505 LCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQE  584 (1230)
T ss_dssp             HHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHH
T ss_pred             HHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHH
Confidence            643222111112247899999999998888988899999988843111       00001123456677777  556788


Q ss_pred             HHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh--hhhhhhhh
Q 008940          221 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRR  298 (548)
Q Consensus       221 v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~  298 (548)
                      ++..++.+++.++......           +                          ...++.++.++..  .++..|..
T Consensus       585 vr~~a~~~lg~L~~~~g~~-----------~--------------------------~~~~~~~l~~L~~~l~~e~~r~~  627 (1230)
T 1u6g_C          585 VKERAISCMGQIICNLGDN-----------L--------------------------GSDLPNTLQIFLERLKNEITRLT  627 (1230)
T ss_dssp             HHHHHHHHHHHHHHHTGGG-----------C--------------------------CTHHHHHHHHHHHHTTSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHhCch-----------h--------------------------hhhHHHHHHHHHHHhccchhHHH
Confidence            9999999999987532210           0                          0123334444433  34557888


Q ss_pred             HHHHhhhccCCCcc-ceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          299 VALALAHLCSPDDQ-RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       299 a~~aL~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ++.++..++..... .....-...++.|...+.+.+..+|..++.++..++...
T Consensus       628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~  681 (1230)
T 1u6g_C          628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY  681 (1230)
T ss_dssp             HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence            99999988764321 111122356788888888888899999999999998865

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.72  E-value=5.3e-07  Score=85.51  Aligned_cols=246  Identities=11%  Similarity=0.075  Sum_probs=161.9

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      ...+++++.++|..++....-.+.+++...++    +.  =++..|.+=++++++-+|-.|+++|+++..  ++.-+.  
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e----~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~--  139 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED----VI--IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA--  139 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC----GG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH--
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH----HH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH--
Confidence            34567899999999999999999998874222    11  257788889999999999999999999964  333222  


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchh
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA  199 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  199 (548)
                         ..+.+.+.+.+.++-+++.|+.+...+....++.    ++ ++++.+-+++.+.++-++.+|+.+|..+...+..  
T Consensus       140 ---l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--  209 (355)
T 3tjz_B          140 ---IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--  209 (355)
T ss_dssp             ---HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred             ---HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence               4567888999999999999999999998665553    22 6899999999999999999999999999865321  


Q ss_pred             hhHhcCChHHHHHhhcCC---ChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940          200 GIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  276 (548)
Q Consensus       200 ~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  276 (548)
                            .+..++..+..+   ++-.+...+..+..++..++..                                    .
T Consensus       210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~------------------------------------~  247 (355)
T 3tjz_B          210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS------------------------------------R  247 (355)
T ss_dssp             ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------------------------------
T ss_pred             ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh------------------------------------h
Confidence                  233444444442   3444444455555555433100                                    0


Q ss_pred             hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          277 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       277 ~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ....++.+..+|++.++.|..+|+.++..+...+..  .+  ..++..|..++.++++++|..|...|..++...
T Consensus       248 ~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~  318 (355)
T 3tjz_B          248 DSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH  318 (355)
T ss_dssp             ---------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence            112445555667788899999999999998552221  11  245667778888999999999998888887653

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.70  E-value=3.1e-08  Score=74.86  Aligned_cols=80  Identities=21%  Similarity=0.356  Sum_probs=63.0

Q ss_pred             EEEEe-CCeEEEchHHHHhcccHHHHhhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHhcCc-----------cccch
Q 008940          383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL  448 (548)
Q Consensus       383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~-----------~~~~~  448 (548)
                      +++.. +|+.|.+++.+ +..|++++.|+..  .+.|+....|+++++++.+++.+++|+|...           ..++.
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~   81 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   81 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence            34444 78999999997 8899999999974  3356666799999999999999999998643           35778


Q ss_pred             HhHHHHHHHHHHhCh
Q 008940          449 DIAQDLLRAADQYLL  463 (548)
Q Consensus       449 ~~~~~ll~~a~~~~~  463 (548)
                      +.+.+|+.||+++++
T Consensus        82 ~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           82 EIALELLMAANFLDC   96 (96)
T ss_dssp             TTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            899999999999975

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.70  E-value=1.2e-07  Score=86.65  Aligned_cols=186  Identities=12%  Similarity=0.085  Sum_probs=139.3

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      +.+.+.+++.++..|..|+..|..+..+.+.....-. ..+++.|...+. +.+..++..|+.+++.++..-...-.. .
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~   95 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y   95 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence            4588899999999999999999999875333211111 235777888884 899999999999999998532211011 1


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-ch
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQ  198 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~  198 (548)
                      ...++|.++..+.+.+..++..+..+|.+++...+ .      ..+++.+...+++.++.++..++..|..+..... ..
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            23478999999999999999999999999985432 1      1367888999999999999999999999764432 11


Q ss_pred             -hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC
Q 008940          199 -AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       199 -~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~  235 (548)
                       ..-.-...++.+..++.+.++++|..|..+++.++..
T Consensus       169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence             1111124677899999999999999999999998753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.69  E-value=7e-07  Score=94.25  Aligned_cols=259  Identities=14%  Similarity=0.092  Sum_probs=176.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC--------HHHHHHHHHHHHHhhccCcchhhHhhhc
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--------TKVQRAAAGALRTLAFKNDENKNQIVEC   79 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--------~~v~~~a~~~L~~l~~~~~~~~~~~~~~   79 (548)
                      .++.++..|+-+|.-+..+...  .      ++..|...|.+++        +.++..|+..|+....++..       .
T Consensus       407 ~~~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------e  471 (963)
T 4ady_A          407 SSRFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------I  471 (963)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------H
T ss_pred             CcHHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------H
Confidence            3467888888888888744321  1      3456777776655        67899999999987654221       1


Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh-hcCChHHHHHHHHHHHHhhcCCchhHH
Q 008940           80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKV  158 (548)
Q Consensus        80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~  158 (548)
                      .+++.|.+++.+++..++..|+.+|+.+..+..+.       .++..|++.+ .+.+..+++.++.+|+.+..+.++   
T Consensus       472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---  541 (963)
T 4ady_A          472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---  541 (963)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---
Confidence            25777888898888878888998998874332221       1244555543 455688999999999988766544   


Q ss_pred             HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhh-cCCChhHHHHHHHHHHhcccCC
Q 008940          159 HIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       159 ~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~  236 (548)
                            .++.++..|. +.++.+|..++.+++--.....+..      .++.|+..+ .+.++.+++.|+.+|+.+....
T Consensus       542 ------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~  609 (963)
T 4ady_A          542 ------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD  609 (963)
T ss_dssp             ------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred             ------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence                  4566666665 5788889888888876555544432      355455444 4567889999999999876443


Q ss_pred             cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHH-HHHhhhhhhhhhHHHHhhhccCCCcccee
Q 008940          237 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVALALAHLCSPDDQRTI  315 (548)
Q Consensus       237 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~~~~~a~~aL~~l~~~~~~~~~  315 (548)
                      +.                                         .+++++. ++++.++.+|..|+.+|+.++.+....  
T Consensus       610 ~e-----------------------------------------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--  646 (963)
T 4ady_A          610 YT-----------------------------------------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--  646 (963)
T ss_dssp             CS-----------------------------------------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--
T ss_pred             HH-----------------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--
Confidence            21                                         1233344 334578888888888888887655432  


Q ss_pred             eecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          316 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       316 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                          .++..|..+.++++..||..|+.+|..+...
T Consensus       647 ----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          647 ----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred             ----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence                3567788888888888888888888888654

>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.6e-08  Score=78.33  Aligned_cols=57  Identities=14%  Similarity=0.201  Sum_probs=51.5

Q ss_pred             HhcCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhhCcchhHhchhhcHHHHH
Q 008940          475 AQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH  531 (548)
Q Consensus       475 ~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~~  531 (548)
                      .+.++++||+.++.+|+.|+++.|.+.|..||.+||.++.++++|.+||.+.+.+++
T Consensus         5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL   61 (105)
T 2eqx_A            5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDII   61 (105)
T ss_dssp             CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999776554444

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=98.60  E-value=2.3e-07  Score=78.22  Aligned_cols=97  Identities=18%  Similarity=0.260  Sum_probs=75.0

Q ss_pred             cEEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCc-------------
Q 008940          382 DVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGS-------------  443 (548)
Q Consensus       382 Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~-------------  443 (548)
                      -+++.. +|+.|.+++.+ +..|.+++.|+.....    +.....|++++++..++..+++|+|...             
T Consensus         8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~   86 (169)
T 3v7d_A            8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR   86 (169)
T ss_dssp             EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred             eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence            345544 58999999997 7789999999975322    2233689999999999999999997643             


Q ss_pred             ------------cccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCC
Q 008940          444 ------------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS  479 (548)
Q Consensus       444 ------------~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~  479 (548)
                                  +.++.+.+.+|+.||++|+++.|..+|+..+...+.
T Consensus        87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik  134 (169)
T 3v7d_A           87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR  134 (169)
T ss_dssp             -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence                        235668899999999999999999999998855443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.59  E-value=7.1e-09  Score=84.71  Aligned_cols=121  Identities=22%  Similarity=0.221  Sum_probs=94.1

Q ss_pred             cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940           37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      ...++.++.+|+++++.+|..|+.+|+.+...            .++.|+.+|+++++.+|..|+++|+++..  +    
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~----   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E----   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence            46678899999999999999999998877531            26889999999999999999999999852  2    


Q ss_pred             HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008940          117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  191 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l  191 (548)
                           ..++.|..++.++++.++..++++|.++.  +         .+.++.|..+++++++.++..++.+|.++
T Consensus        73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~---------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIG--G---------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--S---------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 24889999999999999999999999984  1         13578899999999999999999988753

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=98.56  E-value=4.5e-07  Score=70.10  Aligned_cols=94  Identities=17%  Similarity=0.256  Sum_probs=77.2

Q ss_pred             cEEEEeCCeEEEchHHHHhccc-HHHHhhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCccccchHh-HHHHH
Q 008940          382 DVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQDLL  455 (548)
Q Consensus       382 Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~ll  455 (548)
                      -|.+.|||..|..++..|.... .+|..||.++..    ....+.+-+ |-+|..|+.+|+|+.+|++.++.+. ...++
T Consensus         7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~   85 (107)
T 3drz_A            7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL   85 (107)
T ss_dssp             EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred             EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHH
Confidence            5788999999999999999875 478999876521    123445666 5799999999999999999876543 57899


Q ss_pred             HHHHHhChHhHHHHHHHHHHh
Q 008940          456 RAADQYLLEGLKRLCEYTIAQ  476 (548)
Q Consensus       456 ~~a~~~~~~~l~~~c~~~l~~  476 (548)
                      +-|.+|+++.|++.|++.+.+
T Consensus        86 ~Ea~fy~l~~L~~~l~~~i~~  106 (107)
T 3drz_A           86 EEAEFYNITSLIKLVKDKIRE  106 (107)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHhc
Confidence            999999999999999988764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.56  E-value=8.9e-07  Score=84.00  Aligned_cols=242  Identities=14%  Similarity=0.020  Sum_probs=134.4

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      +..|.+-++++++-+|-.|+++|.++..  ++-.+.     +.+.+-+.+.+.++-+|..|+-+..++....++..    
T Consensus       106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----  174 (355)
T 3tjz_B          106 TSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----  174 (355)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----
T ss_pred             HHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----
Confidence            4566777788999999999999999985  443332     45667788889999999999999999988877743    


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC---CHHHHHHHHHHHHHhhcCCc
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP---DVQLREMSAFALGRLAQDMH  196 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~  196 (548)
                       .++++.+-+++.+.++-+...|..+|..+...+..         .+..++..+...   ++-.+...+..+..++..++
T Consensus       175 -~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~  244 (355)
T 3tjz_B          175 -KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED  244 (355)
T ss_dssp             -HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred             -HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence             26899999999999999999999999999754422         223344444332   34444444555545443321


Q ss_pred             chhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940          197 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  276 (548)
Q Consensus       197 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  276 (548)
                      .   -.....++.+...|++.++.|...|+.++..+...+..  .+                                  
T Consensus       245 ~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~~----------------------------------  285 (355)
T 3tjz_B          245 G---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--EL----------------------------------  285 (355)
T ss_dssp             ---------------CCCCCSSHHHHHHHHHHHTC---------------------------------------------
T ss_pred             h---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--HH----------------------------------
Confidence            1   11234566788888999999999999999998653211  00                                  


Q ss_pred             hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHH
Q 008940          277 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK  346 (548)
Q Consensus       277 ~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  346 (548)
                       ..++..|..++.++++.+|..|++.|..++...+..-  .  ..-..+.+++.++|..+...|..+|.+
T Consensus       286 -~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v--~--~~n~~ie~li~d~n~sI~t~Aittllk  350 (355)
T 3tjz_B          286 -APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV--T--ACNLDLENLVTDANRSIATLAITTLLK  350 (355)
T ss_dssp             ---CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred             -HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH--H--HHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence             1134455577888999999999999999876543221  1  134457788999999998888777665

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.55  E-value=3.7e-07  Score=83.30  Aligned_cols=177  Identities=16%  Similarity=0.217  Sum_probs=130.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      .+...|..|+..|..+....+....... ...++.|...+. +.+..++..|+.+++.++..-........ ..+++.++
T Consensus        27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-~~ilp~ll  104 (242)
T 2qk2_A           27 KKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-SACVPSLL  104 (242)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHH
Confidence            3457789999999999866333211000 134567777884 88999999999999999963211111222 23788999


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC-ch--hHHHHHhc
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SD--CKVHIVQR  163 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~--~~~~~~~~  163 (548)
                      ..+.+++..+|..+..+|..++...+ .      ..+++.+...+++.++.++..++.+|..+.... +.  ....+  .
T Consensus       105 ~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~  175 (242)
T 2qk2_A          105 EKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--K  175 (242)
T ss_dssp             HGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--H
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--H
Confidence            99999999999999999999976432 1      125778889999999999999999999965443 22  11222  3


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940          164 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       164 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  195 (548)
                      .+++.+..++.+.++++|..|..+++.++..-
T Consensus       176 ~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          176 LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            58899999999999999999999999998543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.55  E-value=3.9e-06  Score=69.01  Aligned_cols=215  Identities=18%  Similarity=0.184  Sum_probs=162.9

Q ss_pred             hcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchh
Q 008940           78 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDC  156 (548)
Q Consensus        78 ~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~  156 (548)
                      +..++..++.+|.++-+.++..|+.++..++...++..+.+     +..|+.+++. ..-......+.+++.++...|+.
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            34578899999999999999999999999998888876554     3466666554 44556677888999998665554


Q ss_pred             HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940          157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       157 ~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  236 (548)
                      ..     +++|.+..-.+-+++.++.....+|..++...+.-.    .+.+..+..++.+++..-+..|+..+..+..+.
T Consensus       105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence            32     577888888888999999999999999986654321    134566889999988777778888888887654


Q ss_pred             cchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc-ccee
Q 008940          237 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTI  315 (548)
Q Consensus       237 ~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~-~~~~  315 (548)
                      ..                                     .-..++|+|..+|.+.+.-+|..|..+|.+++...+ .|+.
T Consensus       176 ~~-------------------------------------yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki  218 (253)
T 2db0_A          176 FK-------------------------------------YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV  218 (253)
T ss_dssp             HH-------------------------------------HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             cc-------------------------------------ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH
Confidence            21                                     113478999999999999999999999999987543 4433


Q ss_pred             eecCCchHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          316 FIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       316 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                            +...++=+.+.+..++...-.+|..++-
T Consensus       219 ------i~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          219 ------VIKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             ------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence                  3344555667777788887777777753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.51  E-value=1.2e-06  Score=79.91  Aligned_cols=192  Identities=7%  Similarity=0.025  Sum_probs=138.1

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHH-hhccCcchhhHhhh-cCChHHHHHHh-ccCChHHHHHHHHHHHHhhcCCh--hHHH
Q 008940           42 PLVELLEFTDTKVQRAAAGALRT-LAFKNDENKNQIVE-CNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSP--NIKK  116 (548)
Q Consensus        42 ~L~~ll~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~Lv~ll-~~~~~~v~~~a~~~L~~l~~~~~--~~~~  116 (548)
                      .+.+.+++.++..|..|+..|.. ++.++++....-.+ ..+++.|.+.+ ++.+..++..|+.+|+.++.+-.  ....
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            45677889999999999999999 88644432210111 13577788888 68899999999999999985321  1110


Q ss_pred             HHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940          117 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  196 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  196 (548)
                      . ....++|.++..+.+....++..+..++..++...+.......-..+++.|...++++++.+++.++.+|..++....
T Consensus       100 ~-y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          100 D-YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             H-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             H-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            1 112368899999999889999999999988885432110000011366788889999999999999999999996554


Q ss_pred             ch-hhh--Hh-cCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940          197 NQ-AGI--AH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  234 (548)
Q Consensus       197 ~~-~~~--~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  234 (548)
                      .. ..+  .- ...++.+.+++.+.++++|..|..+++.++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            31 111  12 4677889999999999999999999998864

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.50  E-value=1.2e-08  Score=83.29  Aligned_cols=120  Identities=17%  Similarity=0.157  Sum_probs=92.5

Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHH
Q 008940          163 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF  242 (548)
Q Consensus       163 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  242 (548)
                      ...++.+..+|+++++.+|..|+++|+++..           ..++.|..+++++++.++..++++|+++...       
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-------   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-------   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH-------
Confidence            4577889999999999999999888887632           1268899999999999999999999998631       


Q ss_pred             HHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCch
Q 008940          243 IRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL  322 (548)
Q Consensus       243 ~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i  322 (548)
                                                          ..++.|+.+++++++.+|..|+++|+++..          ...+
T Consensus        73 ------------------------------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~  106 (131)
T 1te4_A           73 ------------------------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVR  106 (131)
T ss_dssp             ------------------------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHH
T ss_pred             ------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHH
Confidence                                                146788888999999999999999998852          3568


Q ss_pred             HHHHHhhcCCCCccchhhHHHHHH
Q 008940          323 ELLLGLLGSTNPKQQLDGAVALFK  346 (548)
Q Consensus       323 ~~L~~ll~~~~~~v~~~a~~~L~~  346 (548)
                      +.|..+++++++.+|..|+.+|.+
T Consensus       107 ~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A          107 AAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHh
Confidence            999999999999999999988764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.39  E-value=2.8e-05  Score=64.03  Aligned_cols=182  Identities=18%  Similarity=0.198  Sum_probs=139.8

Q ss_pred             hcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChhH
Q 008940           36 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNI  114 (548)
Q Consensus        36 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~~  114 (548)
                      +...+..++.+|.++-+.||..|+..+..++..-++..+.+     +..|+.+++ ++.-.+-....++++.++...|+.
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            34567788999998889999999999999998666655443     445666665 556667677889999999887775


Q ss_pred             HHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940          115 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       115 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  194 (548)
                      -+.     .+|.+..=..-.+++++.+...+|..++..+|....     +++.-+..++.++|..=+..++..+..+..+
T Consensus       105 v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          105 VKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             HHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             HHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence            332     466777767778999999999999999977765433     4667899999998877777777777766543


Q ss_pred             CcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCC
Q 008940          195 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       195 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  236 (548)
                      .   ... -...+|.|..+|.+++.-++..+..+|.+++...
T Consensus       175 ~---~~y-v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n  212 (253)
T 2db0_A          175 S---FKY-VNPFLPRIINLLHDGDEIVRASAVEALVHLATLN  212 (253)
T ss_dssp             T---HHH-HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC
T ss_pred             C---ccc-cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC
Confidence            2   222 2256888999999999999999999999998744

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.34  E-value=4.2e-06  Score=76.19  Aligned_cols=185  Identities=8%  Similarity=0.056  Sum_probs=129.1

Q ss_pred             hhHHHHHHHHHHHH-HhhhChhhHHHHHh-cCCchHHHHhh-ccCCHHHHHHHHHHHHHhhccCc-chhh-HhhhcCChH
Q 008940            9 VNSVIRRAADAITN-LAHENSSIKTRVRM-EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKND-ENKN-QIVECNALP   83 (548)
Q Consensus         9 ~~~~~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~-~~~~-~~~~~g~i~   83 (548)
                      ....|..|+..|.. +..+.+.......+ ...+..|.+.+ ++.+..++..|+.+|+.++.+-. .... .... -+++
T Consensus        29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp  107 (249)
T 2qk1_A           29 KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFT  107 (249)
T ss_dssp             SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHH
Confidence            34668889999999 87554432210001 12356677778 68899999999999999996422 1111 2222 2688


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH---HH
Q 008940           84 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV---HI  160 (548)
Q Consensus        84 ~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~  160 (548)
                      .++..+++....++..+..++-.++...+.......-...++.+...+++.++.++..++.+|..++...+....   ..
T Consensus       108 ~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~  187 (249)
T 2qk1_A          108 PLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY  187 (249)
T ss_dssp             HHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence            899999999999999999998888753311000000012567888889999999999999999999865443111   12


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940          161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       161 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  194 (548)
                      +...++|.+..++.+.++++|..|..+++.++..
T Consensus       188 l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            2257999999999999999999999999999743

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=98.32  E-value=1.4e-06  Score=67.41  Aligned_cols=80  Identities=21%  Similarity=0.356  Sum_probs=62.3

Q ss_pred             EEEE-eCCeEEEchHHHHhcccHHHHhhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHhcCc-----------cccch
Q 008940          383 VTFL-VEGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL  448 (548)
Q Consensus       383 v~~~-~~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~-----------~~~~~  448 (548)
                      +++. -+|..|.+++.+ +..|+.++.|+..  .+.|+....|++++++..+++.+++|+|...           ..++.
T Consensus        19 v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~   97 (112)
T 1vcb_B           19 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   97 (112)
T ss_dssp             EEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCH
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCH
Confidence            5555 368999999994 6799999999974  3455556789999999999999999997643           35778


Q ss_pred             HhHHHHHHHHHHhCh
Q 008940          449 DIAQDLLRAADQYLL  463 (548)
Q Consensus       449 ~~~~~ll~~a~~~~~  463 (548)
                      +.+.+|+.||++|++
T Consensus        98 ~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           98 EIALELLMAANFLDC  112 (112)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            899999999999975

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.25  E-value=0.00012  Score=77.56  Aligned_cols=259  Identities=15%  Similarity=0.076  Sum_probs=166.3

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhc--cCcchhhHhhhcCChHHHHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLIL   87 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      +.++..|+-.|.-..-+.. .      ..+++.|..++.+++..++..|+.+|+.+-.  ++.+         ++..|+.
T Consensus       451 ~~ir~gAaLGLGla~~GS~-~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~---------ai~~LL~  514 (963)
T 4ady_A          451 DVLLHGASLGIGLAAMGSA-N------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE---------AIHDMFT  514 (963)
T ss_dssp             HHHHHHHHHHHHHHSTTCC-C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH---------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCC-C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH---------HHHHHHH
Confidence            4566666666666542211 0      1234567888888777778888888887733  2222         3455555


Q ss_pred             Hh-ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           88 ML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        88 ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                      .+ .+.+..+++.++..|+.+..+.++         .++.+++.|. +.++-++..++.+++.-+.+. .+.      ..
T Consensus       515 ~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGT-Gn~------~a  578 (963)
T 4ady_A          515 YSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGT-GNN------SA  578 (963)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS-CCH------HH
T ss_pred             HHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CCH------HH
Confidence            44 456889999999999998766555         4677777775 466778888888776554442 222      13


Q ss_pred             hHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHh-hcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940          166 VRPLIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFI  243 (548)
Q Consensus       166 v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  243 (548)
                      ++.|+..+ .+.+..+|..|+.+|+.+....+        ..++.++.+ +++.++.+|..++.+|+.++......    
T Consensus       579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~----  646 (963)
T 4ady_A          579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ----  646 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH----
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH----
Confidence            45455554 35677899999999999876543        245566654 45688999999999999997654332    


Q ss_pred             HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchH
Q 008940          244 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE  323 (548)
Q Consensus       244 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~  323 (548)
                                                         .++..|..++++.+..||..|+.+|+.+..+..+...-.-.+...
T Consensus       647 -----------------------------------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~  691 (963)
T 4ady_A          647 -----------------------------------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINK  691 (963)
T ss_dssp             -----------------------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred             -----------------------------------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence                                               245666777788999999999999999976543321000012334


Q ss_pred             HHHHhhcC--CCCccchhhHHHHHHH
Q 008940          324 LLLGLLGS--TNPKQQLDGAVALFKL  347 (548)
Q Consensus       324 ~L~~ll~~--~~~~v~~~a~~~L~~l  347 (548)
                      .|.....+  .++..+..+..+.+-+
T Consensus       692 ~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          692 NFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             HHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHH
Confidence            44555543  3344555555444444

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.10  E-value=9.3e-05  Score=68.20  Aligned_cols=156  Identities=15%  Similarity=0.132  Sum_probs=124.8

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh
Q 008940           41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA  120 (548)
Q Consensus        41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  120 (548)
                      ..+++.|.+++...+..++..|..+-..+......+++.+|+..|+....+.+...+..++++|.++..........+..
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            35677777888888999999999954457899999999999999999999999999999999999998765555444445


Q ss_pred             cCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--------c--CChHHHHHhhC---CCCHHHHHHHHHH
Q 008940          121 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--------R--GAVRPLIEMLQ---SPDVQLREMSAFA  187 (548)
Q Consensus       121 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~--g~v~~L~~ll~---~~~~~v~~~a~~~  187 (548)
                      ...|..+..++.+....+.+.|+..|..++..++.+...+.+        .  .-++.|+.+|+   +.+.+++.++...
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL  280 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL  280 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            678899999999888899999999999998776544443322        1  24778999997   6788999998877


Q ss_pred             HHHhhcCCc
Q 008940          188 LGRLAQDMH  196 (548)
Q Consensus       188 L~~l~~~~~  196 (548)
                      +..+....+
T Consensus       281 IN~lL~~ap  289 (339)
T 3dad_A          281 INKTLAALP  289 (339)
T ss_dssp             HHHHHHHCS
T ss_pred             HHHHHhcCC
Confidence            776665544

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.92  E-value=0.00041  Score=67.40  Aligned_cols=220  Identities=15%  Similarity=0.204  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhcCC--chHHHHhhcc---------------C--CHHHHHHHHHHHHHhhccCcc
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRMEGG--IPPLVELLEF---------------T--DTKVQRAAAGALRTLAFKNDE   71 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~--i~~L~~ll~~---------------~--~~~v~~~a~~~L~~l~~~~~~   71 (548)
                      +.+.-++.+|..+. ..++.|..+.+.++  ++.++..++.               +  ..+++..++-+++.++. +++
T Consensus       183 ~~~~i~v~~L~~Ll-~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~  260 (480)
T 1ho8_A          183 DTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPV  260 (480)
T ss_dssp             HHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHH
T ss_pred             chHHHHHHHHHHHh-cchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHH
Confidence            33556888888888 56888887765543  5666544331               1  36778999999999998 577


Q ss_pred             hhhHhhhcCCh--HHHHHHhc-cCChHHHHHHHHHHHHhhcCCh----h-HHHHHHhcCChHHHHHhhhc---CChHHHH
Q 008940           72 NKNQIVECNAL--PTLILMLR-SEDSAIHYEAVGVIGNLVHSSP----N-IKKEVLAAGALQPVIGLLSS---CCSESQR  140 (548)
Q Consensus        72 ~~~~~~~~g~i--~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~----~-~~~~~~~~g~i~~L~~ll~~---~~~~~~~  140 (548)
                      ..+.+...++.  ..|+..++ +..+.+.+.++.+|.|+....+    . ..+.++..++ +.+++.|+.   .|+++..
T Consensus       261 ~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e  339 (480)
T 1ho8_A          261 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ  339 (480)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence            77777766643  56667676 4578899999999999987652    1 2223333444 445555544   3454443


Q ss_pred             HHHHH-------HHHhh--------------cCCchhHH---------HHHh--cCChHHHHHhhCC----------CCH
Q 008940          141 EAALL-------LGQFA--------------ATDSDCKV---------HIVQ--RGAVRPLIEMLQS----------PDV  178 (548)
Q Consensus       141 ~a~~~-------L~~l~--------------~~~~~~~~---------~~~~--~g~v~~L~~ll~~----------~~~  178 (548)
                      ..-..       ...++              ..+|..+.         .+.+  ..++..|+++|.+          .|+
T Consensus       340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~  419 (480)
T 1ho8_A          340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK  419 (480)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence            32221       12222              11222211         1111  1357788888873          367


Q ss_pred             HHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 008940          179 QLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA  233 (548)
Q Consensus       179 ~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~  233 (548)
                      .+...||.=++.++...+. +..+.+-|+=..+++++.++|++|+.+|+.++..+.
T Consensus       420 ~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          420 IIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8888999999999966554 555566677777999999999999999999988764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.80  E-value=0.00048  Score=63.52  Aligned_cols=172  Identities=17%  Similarity=0.153  Sum_probs=124.2

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhh-hcCChHHHHHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILM   88 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~Lv~l   88 (548)
                      .+.+++++..|..+-..+......++..+|+..|+......+...+..+++++.++-.+ ......++ ....+..+..+
T Consensus       132 ~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~~~fI~~lysl  210 (339)
T 3dad_A          132 GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVVAHSDTIQWLYTL  210 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHG
T ss_pred             cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchhCCHHHHHHHHHH
Confidence            45678888888885547888888899999999999999999999999999999999874 44444444 44678888999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHHHHh--------c--CChHHHHHhhh---cCChHHHHHHHHHHHHhhcCCch
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--------A--GALQPVIGLLS---SCCSESQREAALLLGQFAATDSD  155 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~--g~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~  155 (548)
                      +.+.+..+.+.|+.+|..++..++.....+.+        .  ..++.++.+|+   +.+.+++.++...+-.+...-++
T Consensus       211 v~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd  290 (339)
T 3dad_A          211 CASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD  290 (339)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence            99888999999999999998776544333222        1  23778999997   67788888887766655544332


Q ss_pred             h--HH----HHHhcCChHHHHHhhCCC--CHHHHH
Q 008940          156 C--KV----HIVQRGAVRPLIEMLQSP--DVQLRE  182 (548)
Q Consensus       156 ~--~~----~~~~~g~v~~L~~ll~~~--~~~v~~  182 (548)
                      .  +.    .+.+.|.=..+...++..  ++++++
T Consensus       291 ~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          291 QDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             hhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            1  11    223344444555556654  555554

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=97.77  E-value=4.8e-05  Score=64.70  Aligned_cols=95  Identities=17%  Similarity=0.253  Sum_probs=76.2

Q ss_pred             ccEEEEeCCeEEEchHHHHhccc-HHHHhhhcCCCC----CCCCCceecCCCCHHHHHHHHHHHhcCccccchHh-HHHH
Q 008940          381 SDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQDL  454 (548)
Q Consensus       381 ~Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~l  454 (548)
                      .-|.+.|||..|...+..|.... .+|..||.+...    ....+.+-+ |-+|..|+.+|+|+-+|++.++.+. ...+
T Consensus        12 ~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l   90 (202)
T 3drx_A           12 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGV   90 (202)
T ss_dssp             CEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHH
T ss_pred             CEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHH
Confidence            35788999999999999998764 478889876421    112345666 4599999999999999999876543 4689


Q ss_pred             HHHHHHhChHhHHHHHHHHHHh
Q 008940          455 LRAADQYLLEGLKRLCEYTIAQ  476 (548)
Q Consensus       455 l~~a~~~~~~~l~~~c~~~l~~  476 (548)
                      ++-|.+|+++.|.+.|++.+.+
T Consensus        91 ~eEA~FygL~~Lv~~l~~~i~e  112 (202)
T 3drx_A           91 LEEAEFYNITSLIKLVKDKIRE  112 (202)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcHHHHHHHHHHHHH
Confidence            9999999999999999998854

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.52  E-value=0.0039  Score=68.78  Aligned_cols=332  Identities=13%  Similarity=0.072  Sum_probs=175.6

Q ss_pred             hhHHHHHHHHHHHHHhhh-----------ChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhh
Q 008940            9 VNSVIRRAADAITNLAHE-----------NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV   77 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~-----------~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   77 (548)
                      .+.+|.-|+-.|.+....           +++.+..+.     ..|+..+.+++..+|...+.++..++..+-..    .
T Consensus        50 ~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik-----~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~----~  120 (960)
T 1wa5_C           50 PLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK-----KEIVPLMISLPNNLQVQIGEAISSIADSDFPD----R  120 (960)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH-----HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT----T
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH-----HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc----c
Confidence            357788888888877632           122333333     24566555566899999999999998731111    2


Q ss_pred             hcCChHHHHHHhccCChHHHHHHHHHHHHhhcCC------hhHHHHHH--hcCChHHHHHh-------hhcCCh------
Q 008940           78 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS------PNIKKEVL--AAGALQPVIGL-------LSSCCS------  136 (548)
Q Consensus        78 ~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~--~~g~i~~L~~l-------l~~~~~------  136 (548)
                      ..+.++.|+..+.+++...+..++.+|..++...      ++.+..+.  -....+.++++       +.+...      
T Consensus       121 Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~  200 (960)
T 1wa5_C          121 WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN  200 (960)
T ss_dssp             CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH
T ss_pred             hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            3567888999998888888999999999998632      12222111  11223433333       433321      


Q ss_pred             ---HHHHHHHHHHHHhhcCC-chhHHHHHhcCChHHHHHhhCCC------C---------HHHHHHHHHHHHHhhcCCcc
Q 008940          137 ---ESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSP------D---------VQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       137 ---~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~ll~~~------~---------~~v~~~a~~~L~~l~~~~~~  197 (548)
                         ++...++.++..+...+ +....... ...++.+..++...      +         ..++..++.+|..+......
T Consensus       201 ~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~  279 (960)
T 1wa5_C          201 ILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYED  279 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence               22233555666554221 21111000 12334555555321      1         24677888888887743322


Q ss_pred             hhhhHhcCChHHHHHhhc-----CCChhHHHHHHHHHHhcccCCcc---------hHHHHHhcCccccc--ccc---h--
Q 008940          198 QAGIAHNGGLVPLLKLLD-----SKNGSLQHNAAFALYGLADNEDN---------VADFIRVGGVQKLQ--DGE---F--  256 (548)
Q Consensus       198 ~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~---------~~~~~~~g~i~~L~--~~~---~--  256 (548)
                      .-.-.-...+...+.++.     ..++.+...++..+..++..+..         ...+++.-+++.+.  +.+   +  
T Consensus       280 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~  359 (960)
T 1wa5_C          280 VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFED  359 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhc
Confidence            110001123334444443     23467777888888777654322         22222222222211  000   0  


Q ss_pred             -------------hhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHH----H------hhhhhhhhhHHHHhhhccCCCccc
Q 008940          257 -------------IVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM----R------VAEKGVQRRVALALAHLCSPDDQR  313 (548)
Q Consensus       257 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll----~------~~~~~~~~~a~~aL~~l~~~~~~~  313 (548)
                                   .......|....+..+.......+++.++.++    .      +.++..|..|..+++.++.+....
T Consensus       360 dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~  439 (960)
T 1wa5_C          360 DPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNIT  439 (960)
T ss_dssp             CHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCB
T ss_pred             CHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccc
Confidence                         01122345555566666555555666666554    3      345678889999999997542111


Q ss_pred             eeeecC-----CchHH----HHHhhcCC---CCccchhhHHHHHHHhhh
Q 008940          314 TIFIDG-----GGLEL----LLGLLGST---NPKQQLDGAVALFKLANK  350 (548)
Q Consensus       314 ~~~~~~-----~~i~~----L~~ll~~~---~~~v~~~a~~~L~~l~~~  350 (548)
                      ..-...     ...+.    ++..+.++   ++.+|..|+|++..+++.
T Consensus       440 ~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~  488 (960)
T 1wa5_C          440 NAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ  488 (960)
T ss_dssp             TTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG
T ss_pred             cCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh
Confidence            100000     23333    34445665   778899999999999874

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.50  E-value=0.0013  Score=72.69  Aligned_cols=330  Identities=9%  Similarity=0.025  Sum_probs=177.7

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc-----cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT   84 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   84 (548)
                      ..++..++.++..+....++.-.... ...++..++.+.     ..+..++..++..+..++. .+..+..+...+.++.
T Consensus       260 ~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~  337 (960)
T 1wa5_C          260 IKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNN  337 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHH
Confidence            35678889999888854443211111 234455555554     3457889999999999886 3333333221123333


Q ss_pred             HH-----HHhc----c-------------------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh----
Q 008940           85 LI-----LMLR----S-------------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS----  132 (548)
Q Consensus        85 Lv-----~ll~----~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----  132 (548)
                      ++     +.+.    +                   .....|..|..+|..++...++   .+. ...++.+.+.+.    
T Consensus       338 li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~  413 (960)
T 1wa5_C          338 ITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMS  413 (960)
T ss_dssp             HHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC
T ss_pred             HHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhcc
Confidence            33     3331    0                   1124677888888888755331   111 113344444454    


Q ss_pred             --cCChHHHHHHHHHHHHhhcCCchhHHHHHhc-----CChH----HHHHhhCCC---CHHHHHHHHHHHHHhhcCCcch
Q 008940          133 --SCCSESQREAALLLGQFAATDSDCKVHIVQR-----GAVR----PLIEMLQSP---DVQLREMSAFALGRLAQDMHNQ  198 (548)
Q Consensus       133 --~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----g~v~----~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~  198 (548)
                        +.+...++.|..+++.++.+...... ....     .+.+    .++..+.++   ++.+|..++++++.++..-. .
T Consensus       414 ~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~  491 (960)
T 1wa5_C          414 DPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-K  491 (960)
T ss_dssp             ----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-H
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-H
Confidence              45567888899999999753211100 0000     1112    233344555   88999999999999986532 1


Q ss_pred             hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCc---------chHHHHHhcCcccccccchhh-hh--------
Q 008940          199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED---------NVADFIRVGGVQKLQDGEFIV-QA--------  260 (548)
Q Consensus       199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~g~i~~L~~~~~~~-~~--------  260 (548)
                       .. -...++.+++.+.+.++.|+..|+.+|.+++...+         ....+.  ..++.++...+.. ..        
T Consensus       492 -~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~--p~l~~ll~~L~~ll~~~~~~~~~~  567 (960)
T 1wa5_C          492 -AQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS--NSTEILLKNLIALILKHGSSPEKL  567 (960)
T ss_dssp             -HH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT--TTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             -HH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhh--hhHHHHHHHHHHHHHhccCCCCcc
Confidence             11 22356677788888889999999999999986421         111111  1112222211111 00        


Q ss_pred             -hhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHh-----hhhhhhhhHHHHhhhccCC-CccceeeecCCchHHHH
Q 008940          261 -TKDCVAKTLKRLEEKIHG-------RVLNHLLYLMRV-----AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLL  326 (548)
Q Consensus       261 -~~~~~~~~~~~~~~~~~~-------~~~~~L~~ll~~-----~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~~L~  326 (548)
                       ...-...++..+......       .+++.|...+..     .++..+..++.+|+.++.. ......-.....+|.+.
T Consensus       568 ~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~  647 (960)
T 1wa5_C          568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFL  647 (960)
T ss_dssp             TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence             111222233322222111       244555555543     2445666678888877654 11111223345678888


Q ss_pred             HhhcCCCCccchhhHHHHHHHhhhc
Q 008940          327 GLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       327 ~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ..+.....+....+...+..+....
T Consensus       648 ~iL~~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          648 TVFSEDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhHhhHHHHHHHHHHHHHhc
Confidence            8888766677777777777777653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.48  E-value=0.0028  Score=68.10  Aligned_cols=242  Identities=14%  Similarity=0.139  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHhhhC---hhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHh
Q 008940           14 RRAADAITNLAHEN---SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILML   89 (548)
Q Consensus        14 ~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll   89 (548)
                      +.|+.++..+|...   +.....+.  +.++.++..+.+....||..|-.++..+... +++..     ..+++.|+..+
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~  142 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAI  142 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHh
Confidence            78888999998432   12222222  6778888888888889998888888877752 23222     23688888888


Q ss_pred             ccC-ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHH
Q 008940           90 RSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  168 (548)
Q Consensus        90 ~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  168 (548)
                      .+. .+..+..|+.++..++...++. -...-..+||.+...+-+..+++...|..++..+|.. -.+++   -...+|.
T Consensus       143 ~~~~kw~~k~~~l~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~-~~n~d---~~~~~~~  217 (986)
T 2iw3_A          143 VETNKWQEKIAILAAFSAMVDAAKDQ-VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET-VDNKD---IERFIPS  217 (986)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG-CCCTT---TGGGHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHhHHH-HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc-CCCcc---hhhhHHH
Confidence            754 6999999999999998765432 2222246899999999999999999999999888843 12221   1357899


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCcchh-hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcC
Q 008940          169 LIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG  247 (548)
Q Consensus       169 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~  247 (548)
                      |+..+.+++.  ...+...|+.-+...+.-. .+.  =.+|.|.+-|......+++.++-++.|+|.--+.-...     
T Consensus       218 ~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~-----  288 (986)
T 2iw3_A          218 LIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVI-----  288 (986)
T ss_dssp             HHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHH-----
T ss_pred             HHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHH-----
Confidence            9999998743  3333344444333332211 111  12455666777778889999999999998743332211     


Q ss_pred             cccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-----hhhhhhhhHHHHhhhc
Q 008940          248 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-----AEKGVQRRVALALAHL  306 (548)
Q Consensus       248 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~~~~~a~~aL~~l  306 (548)
                                                    ..++|.|+.-++.     .+|++|..+..++..|
T Consensus       289 ------------------------------~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          289 ------------------------------APFLGKLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             ------------------------------HHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             ------------------------------hhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence                                          1244455554443     6788888887777776

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.46  E-value=0.00024  Score=69.31  Aligned_cols=240  Identities=13%  Similarity=0.104  Sum_probs=147.4

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc--------c--C---ChHHHHHHHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--------S--E---DSAIHYEAVGVIGN  106 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~--------~--~---~~~v~~~a~~~L~~  106 (548)
                      ...|+.-|-++.+++|..|+.+|+.+..............+. +..++++.        +  .   -..||+.++.+|+.
T Consensus       176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            345555566789999999999999998643211111111111 33333332        1  1   24689999999988


Q ss_pred             hhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHH
Q 008940          107 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF  186 (548)
Q Consensus       107 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~  186 (548)
                      + ..-+.-      ..++..++..+..+..+++..+...|..+.   +-.. .  -.++++.++..|++.+.+|+..|+.
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~-~--Ld~Vv~aVL~GL~D~DDDVRAVAAe  321 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVE-D--KDGLCRKLVSLLSSPDEDIKLLSAE  321 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCC-C--HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHH-H--HHHHHHHHHhhcCCcccHHHHHHHH
Confidence            8 544432      344455555557777889988888888882   1111 1  2457788888889999999999999


Q ss_pred             HHHHhhcCCcchhhhHhcCChHHHHHhhcCCC--hhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHH
Q 008940          187 ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC  264 (548)
Q Consensus       187 ~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~  264 (548)
                      +|.-++ .++...     ..+..+...|.+-+  ..-.......|+.|+..+..      ..                  
T Consensus       322 tLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~------a~------------------  371 (800)
T 3oc3_A          322 LLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE------LS------------------  371 (800)
T ss_dssp             HHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT------CC------------------
T ss_pred             Hhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc------cc------------------
Confidence            999888 211111     22344555554432  12233455567777665521      00                  


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHH-hhcCCCCccchhhHHH
Q 008940          265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG-LLGSTNPKQQLDGAVA  343 (548)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~  343 (548)
                                 .+...+|+|..++++.-+.||.+++.+|..+.          ....+..+.+ ++-..+++++..+..+
T Consensus       372 -----------~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~V  430 (800)
T 3oc3_A          372 -----------IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKL  430 (800)
T ss_dssp             -----------CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             -----------cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence                       11247889999999999999999999998887          2223444433 4556677776655544


Q ss_pred             H
Q 008940          344 L  344 (548)
Q Consensus       344 L  344 (548)
                      -
T Consensus       431 W  431 (800)
T 3oc3_A          431 L  431 (800)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.38  E-value=0.0027  Score=68.25  Aligned_cols=287  Identities=14%  Similarity=0.110  Sum_probs=177.6

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChh--HHHHHHh
Q 008940           43 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKKEVLA  120 (548)
Q Consensus        43 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~  120 (548)
                      +.+-+...+..-+..++..+..+..++...  .....+++..|.+.+.+....  +.|+.++..|+.....  ..+... 
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~-   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI-   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH-
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch-
Confidence            444444444455567777777776532111  111235777788888765444  8899999999854321  112222 


Q ss_pred             cCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcchh
Q 008940          121 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQA  199 (548)
Q Consensus       121 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~  199 (548)
                      -+.+|.++..+.+....++..|..++..+...-+....    ..++|.|+..|.+. ....+..|+.++..|+...+.+-
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~  169 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV  169 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence            26789999999998899998888777777644333221    34778898888754 68999999999999997664444


Q ss_pred             hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc---CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHH---
Q 008940          200 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD---NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE---  273 (548)
Q Consensus       200 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~---  273 (548)
                      ...-...+|.+...+.+..+++...|..++..+|.   |.+...      .+|.|++..........|    ...+.   
T Consensus       170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~------~~~~~~~~~~~p~~~~~~----~~~l~~~t  239 (986)
T 2iw3_A          170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER------FIPSLIQCIADPTEVPET----VHLLGATT  239 (986)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG------GHHHHHHHHHCTTHHHHH----HHHHTTCC
T ss_pred             HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh------hHHHHHHHhcChhhhHHH----HHHhhcCe
Confidence            44444578888889999999999999888888875   333221      123333222222222222    22221   


Q ss_pred             --HhhhhhhhHHHHHHHHh----hhhhhhhhHHHHhhhccCC---CccceeeecCCchHHHHHhhc-CCCCccchhhHHH
Q 008940          274 --EKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSP---DDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVA  343 (548)
Q Consensus       274 --~~~~~~~~~~L~~ll~~----~~~~~~~~a~~aL~~l~~~---~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~  343 (548)
                        ..++...+..++.+|..    .+..++..++-++.|+|.-   +.....|+ ...+|.+.+... ..+|++|..|..+
T Consensus       240 fv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a  318 (986)
T 2iw3_A          240 FVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRA  318 (986)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred             eEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHH
Confidence              11334455556666654    4777888899999998763   22222222 244555555544 4788888887777


Q ss_pred             HHHHhh
Q 008940          344 LFKLAN  349 (548)
Q Consensus       344 L~~l~~  349 (548)
                      +..|-+
T Consensus       319 ~~~l~~  324 (986)
T 2iw3_A          319 LKTLRR  324 (986)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776643

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.34  E-value=0.00016  Score=64.90  Aligned_cols=44  Identities=27%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             HHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHH
Q 008940          283 HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL  344 (548)
Q Consensus       283 ~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  344 (548)
                      .|..++.++++.||..++..++                 .+.|..| .+++..|+..++..|
T Consensus       198 ~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          198 DLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             HHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence            4556677788888888888753                 3566666 888888887776543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.0069  Score=55.93  Aligned_cols=189  Identities=11%  Similarity=0.074  Sum_probs=125.1

Q ss_pred             CchHHHHhhccCCHHHHHHHHHHHHHhhccCcchh--hHhh-hc-CChHHHHHHhccCChHHHHHHHHHHHHhhcCChh-
Q 008940           39 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIV-EC-NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-  113 (548)
Q Consensus        39 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~-~~-g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~-  113 (548)
                      -+| |-+-|.+.++..|..|+..|..+....+...  .... .. ...+.+-..+.+.|..++..++.++..++..... 
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            355 6688999999999999999988875322211  1111 11 3455667788899999999999999988753211 


Q ss_pred             ----HHHHHHhcCChHHHHH-hhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 008940          114 ----IKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL  188 (548)
Q Consensus       114 ----~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L  188 (548)
                          ......-..+++.|+. .+.+....++..+..++..++.......      .+++.+...+.+.+|.++..++..|
T Consensus        90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~Knpkv~~~~l~~l  163 (278)
T 4ffb_C           90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKKLPKLIAAAANCV  163 (278)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhccCHHHHHHHHHHH
Confidence                1111222345676765 4777778888888888877764322111      1346677788899999999999999


Q ss_pred             HHhhcCCcch---hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940          189 GRLAQDMHNQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD  234 (548)
Q Consensus       189 ~~l~~~~~~~---~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  234 (548)
                      ..+.......   ....-...++.+..++.+.++.||..|..++..+-.
T Consensus       164 ~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          164 YELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            8876432211   111111245567788899999999999999888754

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.20  E-value=0.022  Score=50.04  Aligned_cols=218  Identities=14%  Similarity=0.192  Sum_probs=142.4

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhc-CCchHHHH-hhc------cCC--H---HHHHHHHHHHHHhhccCcchhhH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVE-LLE------FTD--T---KVQRAAAGALRTLAFKNDENKNQ   75 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~-ll~------~~~--~---~v~~~a~~~L~~l~~~~~~~~~~   75 (548)
                      .|+.++.|+..|+.--..-++....+=.. |.+..|++ .++      .+.  .   .-...|+..|..+++ +++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            45667887766665443334443333333 54555543 222      111  1   222455556666776 7999999


Q ss_pred             hhhcCChHHHHHHhccCC-----hHHHHHHHHHHHHhhc-CChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHh
Q 008940           76 IVECNALPTLILMLRSED-----SAIHYEAVGVIGNLVH-SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF  149 (548)
Q Consensus        76 ~~~~g~i~~Lv~ll~~~~-----~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l  149 (548)
                      +.+.++.-.|.++|+..+     +-+|..++++++.+.. ++++.-..+.+.+++|..++.++.+++-.+..|..++..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            999999999999998543     5788999999999875 3456667777889999999999999998888899988888


Q ss_pred             hcCCchhHHHHHh--------cCChHH-HHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhc-------CChHHHHHh
Q 008940          150 AATDSDCKVHIVQ--------RGAVRP-LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN-------GGLVPLLKL  213 (548)
Q Consensus       150 ~~~~~~~~~~~~~--------~g~v~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~~l~~L~~l  213 (548)
                      ..++.. ...+..        ..++.. +..+.+++++.+.++..++-..|+.++..+..+...       |.+.   .+
T Consensus       173 L~dd~G-L~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~---~~  248 (268)
T 2fv2_A          173 LLDDTG-LAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFA---QV  248 (268)
T ss_dssp             HHSHHH-HHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTH---HH
T ss_pred             hccchh-HHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHH---HH
Confidence            755322 111111        123332 233445678899999999999999988877665531       2221   22


Q ss_pred             hcCCChhHHHHHHHHHHhc
Q 008940          214 LDSKNGSLQHNAAFALYGL  232 (548)
Q Consensus       214 l~~~~~~v~~~a~~~L~~l  232 (548)
                      + .+|+..++.-...+.|+
T Consensus       249 l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          249 L-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             H-TSCHHHHHHHHHHHHHS
T ss_pred             H-hcCHHHHHHHHHHHHhc
Confidence            2 35666776666666655

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.05  E-value=0.012  Score=52.99  Aligned_cols=166  Identities=11%  Similarity=0.078  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhh----ccCCHHHHHHHHHHHHHhhcc----CcchhhHhhhcCCh
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL----EFTDTKVQRAAAGALRTLAFK----NDENKNQIVECNAL   82 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i   82 (548)
                      .-+..|+..|......+++.   +.  ..+..+++.+    .+.+..+...++..|..+...    +......-. .-++
T Consensus        61 k~~~~ale~L~~~l~~~~~~---~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~l  134 (266)
T 2of3_A           61 KQHLAALDSLVRLADTSPRS---LL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFV  134 (266)
T ss_dssp             HHHHHHHHHHHHHHHHCHHH---HH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHhhhChHH---HH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHH
Confidence            44556666666665444332   11  1222334433    367899999999888887531    111111111 1268


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh
Q 008940           83 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ  162 (548)
Q Consensus        83 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  162 (548)
                      |.|+.-+.++.+.+|..+-.++..+....+.       ....+.++..+.+.+..++..++..+..+....-..     .
T Consensus       135 P~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~  202 (266)
T 2of3_A          135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-----P  202 (266)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----G
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----c
Confidence            8999999999999999999888777542221       235677888889999999999998888886432111     2


Q ss_pred             cCCh---HHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940          163 RGAV---RPLIEMLQSPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       163 ~g~v---~~L~~ll~~~~~~v~~~a~~~L~~l~~~  194 (548)
                      ...+   +.+..++.+.|..||..|..++..+-..
T Consensus       203 ~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          203 LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            3468   9999999999999999999999877543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.04  E-value=0.01  Score=52.14  Aligned_cols=172  Identities=11%  Similarity=0.094  Sum_probs=122.4

Q ss_pred             HHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCC-----HHHHHHHHHHHHHhhc-cCcchhhHhhhcCChHHHHHH
Q 008940           15 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILM   88 (548)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~Lv~l   88 (548)
                      .|+..+..++ .+|+.|..+.++++.-.|-.+|+..+     +.+|..++.+++.+.. ++++....+.+.++++..++.
T Consensus        75 naLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri  153 (268)
T 2fv2_A           75 NALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI  153 (268)
T ss_dssp             HHHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence            5555667777 78999999999998888888887544     6789999999999986 345666677788999999999


Q ss_pred             hccCChHHHHHHHHHHHHhhcCChhHHHH------HHh-cCChHHHHH-hhhcCChHHHHHHHHHHHHhhcCCchhHHHH
Q 008940           89 LRSEDSAIHYEAVGVIGNLVHSSPNIKKE------VLA-AGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHI  160 (548)
Q Consensus        89 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~------~~~-~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  160 (548)
                      ++.+++-.+..|..++.++-.++......      +.. ...+..++. +.+.+++.+.+..+++-..|+ +++..+..+
T Consensus       154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs-dn~rar~aL  232 (268)
T 2fv2_A          154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS-DNPRAREAL  232 (268)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TSHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh-cCHHHHHHH
Confidence            99999999999999999998775543211      111 122333333 345677889999999999996 556666655


Q ss_pred             HhcCChHH------HHHhhCCCCHHHHHHHHHHHHHh
Q 008940          161 VQRGAVRP------LIEMLQSPDVQLREMSAFALGRL  191 (548)
Q Consensus       161 ~~~g~v~~------L~~ll~~~~~~v~~~a~~~L~~l  191 (548)
                      .+  ++|.      +..++ .+|+.++.+-...+.|+
T Consensus       233 ~~--~LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          233 RQ--CLPDQLKDTTFAQVL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HH--HSCGGGTSSTTHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             HH--hCcHHhhChHHHHHH-hcCHHHHHHHHHHHHhc
Confidence            43  1121      11222 25777777777666665

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.00  E-value=0.013  Score=52.86  Aligned_cols=178  Identities=12%  Similarity=0.075  Sum_probs=123.7

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc----cCChHHHHHHHHHHHHhhcC----C
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLVHS----S  111 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~----~~~~~v~~~a~~~L~~l~~~----~  111 (548)
                      =+.+...+-+.|...+..|+..|......+++   .+..  .++.+++.+.    +.+..+...++.+|..+...    +
T Consensus        48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~  122 (266)
T 2of3_A           48 KVSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE  122 (266)
T ss_dssp             CHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            34566666677888899999988887653332   2211  3444555443    77889999998888887421    1


Q ss_pred             hhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 008940          112 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  191 (548)
Q Consensus       112 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l  191 (548)
                      ....+. ...-.+|.|+.-+.++...++..+-.++..++...+.       ..+++.++.-+++.+..+|..++..+..+
T Consensus       123 y~~~~~-ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~l  194 (266)
T 2of3_A          123 TPMSQE-EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYY  194 (266)
T ss_dssp             CCCCHH-HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             ccchHH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            111000 0123678999988888888988888888777643222       23567788889999999999999999998


Q ss_pred             hcCCcchhhhHhcCCh---HHHHHhhcCCChhHHHHHHHHHHhccc
Q 008940          192 AQDMHNQAGIAHNGGL---VPLLKLLDSKNGSLQHNAAFALYGLAD  234 (548)
Q Consensus       192 ~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~v~~~a~~~L~~l~~  234 (548)
                      -......    ...++   +.+..++.+.|..|+..|..++..+-.
T Consensus       195 i~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          195 ITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            7443322    12467   889999999999999999999887754

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.95  E-value=0.0019  Score=63.17  Aligned_cols=215  Identities=16%  Similarity=0.087  Sum_probs=129.4

Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhc--CChHHHHHhhh-c------C---ChHHHHHHHHHHHH
Q 008940           81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLS-S------C---CSESQREAALLLGQ  148 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~-~------~---~~~~~~~a~~~L~~  148 (548)
                      ..+.|+.-|-++.+++|.-|+.+|+.+..............  ...-.++-++. +      +   -..||+.|+.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            34566666678999999999999999864322110000000  11122222221 1      1   25699999999999


Q ss_pred             hhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHH
Q 008940          149 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA  228 (548)
Q Consensus       149 l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  228 (548)
                      + ..-+..      ..++..++..+..+..+++..++-.|..+.   +-...  -.+.++.++..|.+.+++|+..|+.+
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence            8 554443      344555555557788999999999999991   11111  23557778888899999999999999


Q ss_pred             HHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh-hhhh-hhhHHHHhhhc
Q 008940          229 LYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGV-QRRVALALAHL  306 (548)
Q Consensus       229 L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~-~~~a~~aL~~l  306 (548)
                      |.-++ .++....                                      ++..+...|.+- |-.. -......|+.|
T Consensus       323 LiPIA-~p~~l~~--------------------------------------LL~iLWd~L~~LDDLSASTgSVMdLLAkL  363 (800)
T 3oc3_A          323 LCHFP-ITDSLDL--------------------------------------VLEKCWKNIESEELISVSKTSNLSLLTKI  363 (800)
T ss_dssp             HTTSC-CSSTHHH--------------------------------------HHHHHHHHHHTCCSCCTTHHHHHHHHHHH
T ss_pred             hhhhc-chhhHHH--------------------------------------HHHHHHHHhhhhcccchhhHHHHHHHHHH
Confidence            99999 3322222                                      233444444432 1111 11112233333


Q ss_pred             cCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940          307 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA  348 (548)
Q Consensus       307 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  348 (548)
                      +..+...  -.....+|.|...+.|+-+.||..+..+|..+.
T Consensus       364 ~s~p~~a--~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          364 YRENPEL--SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             HHHCTTC--CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred             HcCCccc--ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence            3222211  112378999999999999999998887766543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.92  E-value=0.0012  Score=59.11  Aligned_cols=103  Identities=16%  Similarity=0.065  Sum_probs=54.3

Q ss_pred             hhhhHHHHHHHHH-----HHHHhh-hChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcC
Q 008940            7 RAVNSVIRRAADA-----ITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN   80 (548)
Q Consensus         7 ~~~~~~~~~a~~~-----L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   80 (548)
                      ...+.++..++..     +..+.. .++..|......-..+.|..+++++++.||..++..+                  
T Consensus        61 d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l------------------  122 (244)
T 1lrv_A           61 DPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRL------------------  122 (244)
T ss_dssp             CSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS------------------
T ss_pred             CCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhC------------------
Confidence            3345566655532     222221 2333344333333334455555566666665555532                  


Q ss_pred             ChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHH
Q 008940           81 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL  145 (548)
Q Consensus        81 ~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  145 (548)
                      ..+.+..+++++++.+|..++.-   +.               .+.+..+++++++.|+..++..
T Consensus       123 ~~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~aa~~  169 (244)
T 1lrv_A          123 PLEQLEQMAADRDYLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVAKR  169 (244)
T ss_dssp             CTGGGGGGTTCSSHHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHHHHc
Confidence            12345566788889999888763   21               1234455666677777666653

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.88  E-value=0.27  Score=45.37  Aligned_cols=206  Identities=15%  Similarity=0.178  Sum_probs=149.5

Q ss_pred             HHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhc--CChHHHHHHhc-cCChHHHHHHHHHHHHhh
Q 008940           32 TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLR-SEDSAIHYEAVGVIGNLV  108 (548)
Q Consensus        32 ~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~  108 (548)
                      ..+...+.+..|+..|..=+.+.|..+..+..++.+.....+...++.  .-.+.+..++. -+++++-..+-..|+...
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLReci  151 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence            345556788888888888888999999999998887544332222110  11223333333 235666666777777776


Q ss_pred             cCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhc---CChHHHHHhhCCCCHHHHHHHH
Q 008940          109 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMSA  185 (548)
Q Consensus       109 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---g~v~~L~~ll~~~~~~v~~~a~  185 (548)
                      .+ +.+...+...+.+-.+.+.++.++-++...|..++..+...+..........   ......-.++.+++--++..++
T Consensus       152 r~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          152 RH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             TS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             Hh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            55 6667778888888899999999999999999999988876655544444443   3466677889999999999999


Q ss_pred             HHHHHhhcCCcchhhh----HhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940          186 FALGRLAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       186 ~~L~~l~~~~~~~~~~----~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                      ..|+.+-.+..+...+    .+..-+..++.+|++....++..|..+.--+..++.-
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K  287 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  287 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence            9999999887775433    3445577899999999999999999988888766543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.014  Score=53.86  Aligned_cols=178  Identities=13%  Similarity=0.070  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHhhhChhhH--H-HHHhcC-CchHHHHhhccCCHHHHHHHHHHHHHhhccCcc-----hhhHhhhcCC
Q 008940           11 SVIRRAADAITNLAHENSSIK--T-RVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-----NKNQIVECNA   81 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~--~-~i~~~g-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~g~   81 (548)
                      ..|..|+..|..+....+...  . .+...+ ..+.+...+.+.|..++..++.++..++..-..     ......-..+
T Consensus        24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~  103 (278)
T 4ffb_C           24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTW  103 (278)
T ss_dssp             HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHH
Confidence            457888888888775433211  1 111122 345566788899999999999999988752111     1111112235


Q ss_pred             hHHHHH-HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCC-ch-hHH
Q 008940           82 LPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SD-CKV  158 (548)
Q Consensus        82 i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~-~~~  158 (548)
                      ++.|+. .+.+....++..+..++..++...... ..     .++.+...+.+.++.++..++..|..+.... .. ...
T Consensus       104 l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~  177 (278)
T 4ffb_C          104 TPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNV  177 (278)
T ss_dssp             HHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCc
Confidence            666765 477888899999988887776432211 11     2456677788899999999888888775321 11 001


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940          159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       159 ~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  194 (548)
                      ...-..+++.+..++.+.++.||..|..++..+-..
T Consensus       178 k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          178 QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            111123566788889999999999999999988643

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=96.71  E-value=0.00065  Score=52.70  Aligned_cols=96  Identities=14%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             cEEEEeCCeEEEchHHHHhcccH-HHHhhhcCCC-CCCCCCceecCCCCHHHHHHHHHHHhcCccccchH-hHHHHHHHH
Q 008940          382 DVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGY-REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRAA  458 (548)
Q Consensus       382 Dv~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~-~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll~~a  458 (548)
                      -|.+.|||..|...+..|..... ++..|+.+.. .....+.+-+ |=+|..|+.+|+|+-+|++.++.+ ....+++-|
T Consensus         6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea   84 (115)
T 3kvt_A            6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL   84 (115)
T ss_dssp             EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred             EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence            47889999999999999987643 4556665422 1223446666 458999999999999999987754 467999999


Q ss_pred             HHhChHhHH--HHHHHHHHhcC
Q 008940          459 DQYLLEGLK--RLCEYTIAQDI  478 (548)
Q Consensus       459 ~~~~~~~l~--~~c~~~l~~~l  478 (548)
                      .+|+++...  .-|...+.++-
T Consensus        85 ~fy~i~~~~l~~CC~~~~~~~~  106 (115)
T 3kvt_A           85 EFWGLDSNQVEPCCWMTYTAHR  106 (115)
T ss_dssp             HHHTCCGGGBCGGGSHHHHSCC
T ss_pred             HHhCCChHHHHHHHHHHHHhcc
Confidence            999998744  33555554433

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.61  E-value=0.022  Score=62.91  Aligned_cols=295  Identities=10%  Similarity=-0.005  Sum_probs=154.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhCh--hhHHHHHhcCCchHHHHh-------hccCCH---HHHHHHHHHHHHhhccCcchhh-
Q 008940            8 AVNSVIRRAADAITNLAHENS--SIKTRVRMEGGIPPLVEL-------LEFTDT---KVQRAAAGALRTLAFKNDENKN-   74 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~l-------l~~~~~---~v~~~a~~~L~~l~~~~~~~~~-   74 (548)
                      ..|++++.|+.++..+....+  +....+.  ..++.++.+       +...+.   +.....++.+..++........ 
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~  333 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF--VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLS  333 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH--HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH--HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999985322  1111111  123333332       123342   6666777777777642221100 


Q ss_pred             Hh---------hhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhhcCC---------hhHHHHHHh--cCChHHHHH
Q 008940           75 QI---------VECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSS---------PNIKKEVLA--AGALQPVIG  129 (548)
Q Consensus        75 ~~---------~~~g~i~~Lv~ll~~-----~~~~v~~~a~~~L~~l~~~~---------~~~~~~~~~--~g~i~~L~~  129 (548)
                      .+         .-...++.++.+...     .++++...++..+..++...         ......+..  ...++.++.
T Consensus       334 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~  413 (971)
T 2x1g_F          334 GITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR  413 (971)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            00         001345555555543     47788999999888876411         111111111  133444444


Q ss_pred             hhhcCCh---------------HHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHH
Q 008940          130 LLSSCCS---------------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALG  189 (548)
Q Consensus       130 ll~~~~~---------------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-----~~~~v~~~a~~~L~  189 (548)
                      .+.-++.               ..|+.+..+|..++...+.....    -+++.+...+.+     .+...++.++.+++
T Consensus       414 ~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          414 KSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILE----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            4432111               24455666776666433311111    122333333332     56778999999999


Q ss_pred             HhhcCCcchhhhHhcCChHHHHHhh---c--CCChhHHHHHHHHHHhcccCC-cchHHHHHhcCcccccccchhhhhhhH
Q 008940          190 RLAQDMHNQAGIAHNGGLVPLLKLL---D--SKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFIVQATKD  263 (548)
Q Consensus       190 ~l~~~~~~~~~~~~~~~l~~L~~ll---~--~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~~~~~~~~~~~  263 (548)
                      .++.......    ...++.++.++   .  +.++.++..++++++.++..- .....                      
T Consensus       490 ~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~----------------------  543 (971)
T 2x1g_F          490 SVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY----------------------  543 (971)
T ss_dssp             HTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C----------------------
T ss_pred             HHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH----------------------
Confidence            9986644321    12233333333   3  347889999999999997421 11000                      


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCC--CCccchhhH
Q 008940          264 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST--NPKQQLDGA  341 (548)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~  341 (548)
                                   -..+++.++..| +  +.++..|++++.+++..-...-.-.-...+..|.+++..+  +...+..+.
T Consensus       544 -------------l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~  607 (971)
T 2x1g_F          544 -------------IPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLM  607 (971)
T ss_dssp             -------------HHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence                         012566667666 2  8899999999999984321110001123445556666653  345577777


Q ss_pred             HHHHHHhhh
Q 008940          342 VALFKLANK  350 (548)
Q Consensus       342 ~~L~~l~~~  350 (548)
                      .++..++..
T Consensus       608 ~ai~~i~~~  616 (971)
T 2x1g_F          608 FSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            777777753

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=96.57  E-value=0.0046  Score=48.58  Aligned_cols=91  Identities=19%  Similarity=0.203  Sum_probs=66.2

Q ss_pred             ccEEEEeCCeEEEchHHHHhcccHHHHhhhcCC----CCCCCCCceecCCCCHHHHHHHHHHHhcCccccchH-hHHHHH
Q 008940          381 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLL  455 (548)
Q Consensus       381 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll  455 (548)
                      .-|.+.|||..|...+..|.....   .+|...    +.....+.+-++ =++..|+.+|+|+-+|++.++.+ .+..++
T Consensus        13 ~~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~FiD-Rdp~~F~~ILnflR~G~l~~p~~~~~~~l~   88 (124)
T 1s1g_A           13 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFFD-RDPEVFRCVLNFYRTGKLHYPRYECISAYD   88 (124)
T ss_dssp             CEEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEEC-SCHHHHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred             CEEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEEc-CChHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence            358889999999999999976532   233321    112234466664 49999999999999999987754 478999


Q ss_pred             HHHHHhChHhHH--HHHHHHHH
Q 008940          456 RAADQYLLEGLK--RLCEYTIA  475 (548)
Q Consensus       456 ~~a~~~~~~~l~--~~c~~~l~  475 (548)
                      +-|++|+++.+.  ..|.....
T Consensus        89 ~Ea~fy~i~~l~l~~cC~~~~~  110 (124)
T 1s1g_A           89 DELAFYGILPEIIGDCCYEEYK  110 (124)
T ss_dssp             HHHHHTTCCGGGBCHHHHHHHH
T ss_pred             HHHHHcCCChHHHHHHHHHHHH
Confidence            999999999873  44444443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.43  E-value=0.081  Score=57.94  Aligned_cols=307  Identities=12%  Similarity=0.082  Sum_probs=157.3

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc--chhhHhhhcCChHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND--ENKNQIVECNALPTLI   86 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~Lv   86 (548)
                      +++++..++.+|......-+.  ..+...+.++.+.++|..  ++++..|+.+|..+.....  +.+..++..=.+...+
T Consensus       206 ~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~  281 (980)
T 3ibv_A          206 NYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF  281 (980)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence            456777888888887753222  344556677777777764  7999999999999986422  2333332220111112


Q ss_pred             HHhc--cCChHHHHHHHHHHHHhhc------CCh-----hHHHHH--HhcCChHHHHHhhhcCChHHHHHHHHHHHHhhc
Q 008940           87 LMLR--SEDSAIHYEAVGVIGNLVH------SSP-----NIKKEV--LAAGALQPVIGLLSSCCSESQREAALLLGQFAA  151 (548)
Q Consensus        87 ~ll~--~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~~--~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  151 (548)
                      ..+.  .+|.++.+..++.+..++.      ..+     +.+...  .-.+.++.++.++.+++.++...+...+..+..
T Consensus       282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~  361 (980)
T 3ibv_A          282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV  361 (980)
T ss_dssp             CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence            2222  4566776655555544421      111     111111  113588899999998888887777666555542


Q ss_pred             CCch------hHHHH--HhcCChHHHHHhhCCC------C----------HHHHHHHHHHHHHhhcCCcchhhhH-hcCC
Q 008940          152 TDSD------CKVHI--VQRGAVRPLIEMLQSP------D----------VQLREMSAFALGRLAQDMHNQAGIA-HNGG  206 (548)
Q Consensus       152 ~~~~------~~~~~--~~~g~v~~L~~ll~~~------~----------~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~  206 (548)
                      ....      .....  .-..+++.++..++-+      +          .+.|.... .+...+..-.....+. -...
T Consensus       362 ~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~  440 (980)
T 3ibv_A          362 SLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSA  440 (980)
T ss_dssp             HHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHH
Confidence            1100      00100  0012334444444321      1          02444444 3333221111100000 0001


Q ss_pred             hHH-HHHhhc---CCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhH
Q 008940          207 LVP-LLKLLD---SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN  282 (548)
Q Consensus       207 l~~-L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (548)
                      +.. +.+.+.   +.+....+.++.+|..++..-....... .+.-+.+                          ..+++
T Consensus       441 i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~l--------------------------p~l~~  493 (980)
T 3ibv_A          441 ITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSP--------------------------TVLSQ  493 (980)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCB--------------------------CHHHH
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-Ccccchh--------------------------HHHHH
Confidence            212 223332   2346677888888888876422100000 0000000                          11345


Q ss_pred             HHHHHHH-----hhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHH------hhcCCCCccchhhHHHHHHHhhhc
Q 008940          283 HLLYLMR-----VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG------LLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       283 ~L~~ll~-----~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~------ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      .+..++.     ...+.+|..++++++..+..-...     ...++.+++      -+.++++.++.+|+.++.++++..
T Consensus       494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~  568 (980)
T 3ibv_A          494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI  568 (980)
T ss_dssp             HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence            5555655     467889999999999987643321     123444444      333577889999999999999876


Q ss_pred             c
Q 008940          352 T  352 (548)
Q Consensus       352 ~  352 (548)
                      .
T Consensus       569 ~  569 (980)
T 3ibv_A          569 K  569 (980)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=96.41  E-value=0.0024  Score=48.64  Aligned_cols=80  Identities=14%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             EEEEeCCeEEEchHHHHhcccHHHHhhhcCCC----CCCCCCceecCCCCHHHHHHHHHHHhcCccccchH-hHHHHHHH
Q 008940          383 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGY----REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRA  457 (548)
Q Consensus       383 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~----~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll~~  457 (548)
                      |.+.|||..|...+..|.....   .|+....    .....+.+-++ =+|..|+.+|+|+-+|++.++.+ .+..+.+-
T Consensus         2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~FiD-Rdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E   77 (105)
T 1nn7_A            2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFFD-RDPDIFRHILNFYRTGKLHYPRHECISAYDEE   77 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEEC-SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEEe-CCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence            6789999999999999976542   2333210    11233456664 49999999999999999987654 37889999


Q ss_pred             HHHhChHhH
Q 008940          458 ADQYLLEGL  466 (548)
Q Consensus       458 a~~~~~~~l  466 (548)
                      |++|+++.+
T Consensus        78 a~fy~i~~l   86 (105)
T 1nn7_A           78 LAFFGLIPE   86 (105)
T ss_dssp             HHHHTCCSC
T ss_pred             HHHcCCCHH
Confidence            999999886

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.40  E-value=0.018  Score=53.08  Aligned_cols=202  Identities=12%  Similarity=0.132  Sum_probs=147.9

Q ss_pred             HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH----HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 008940          116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK----VHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGR  190 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~  190 (548)
                      +.+...+.+..|+..+..-+-+.++.++.++.++.+.....+    .-+..  --+.+..++.. +++++...+-..|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence            455667889999999999999999999999999986654322    12221  22222222322 356777777888888


Q ss_pred             hhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc-cCCcchHHHHHhcCcccccccchhhhhhhHHHHHHH
Q 008940          191 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL  269 (548)
Q Consensus       191 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~  269 (548)
                      +.........+...+.+..+.+..+.++-++...|..++..+- .++.....+....                       
T Consensus       150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n-----------------------  206 (341)
T 1upk_A          150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH-----------------------  206 (341)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT-----------------------
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh-----------------------
Confidence            8888777777888888888999999999999999999888774 4444433332221                       


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc----eeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940          270 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVALF  345 (548)
Q Consensus       270 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  345 (548)
                            . ..+....-.+|.+++.-.|..++..|+.+..+..+.    +.+-+..-+..+..+|+++...+|..|..+.-
T Consensus       207 ------y-d~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK  279 (341)
T 1upk_A          207 ------Y-DRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  279 (341)
T ss_dssp             ------H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ------H-HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence                  1 136667778899999999999999999998776544    45555667889999999999999999988766


Q ss_pred             HHhh
Q 008940          346 KLAN  349 (548)
Q Consensus       346 ~l~~  349 (548)
                      -..-
T Consensus       280 vFVA  283 (341)
T 1upk_A          280 VFVA  283 (341)
T ss_dssp             HHHH
T ss_pred             eeee
Confidence            5544

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.32  E-value=0.071  Score=58.82  Aligned_cols=290  Identities=10%  Similarity=0.072  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHHHhh--hChhhHHHHHhcCCchHHHHhhc----------------cCCHHHHHHHHHHHHHhhccCc-c
Q 008940           11 SVIRRAADAITNLAH--ENSSIKTRVRMEGGIPPLVELLE----------------FTDTKVQRAAAGALRTLAFKND-E   71 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~ll~----------------~~~~~v~~~a~~~L~~l~~~~~-~   71 (548)
                      +++..++.++.....  .-|..    .....++.+.. |.                +++++++..|+.++..+....+ .
T Consensus       204 ~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~  278 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCH  278 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred             hHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccc
Confidence            566777777766553  22222    22334444554 31                1457899999999999987322 1


Q ss_pred             hhhHhhhcCChHHHHHH-------hccCC---hHHHHHHHHHHHHhhcCChhH-HHH---------HHhcCChHHHHHhh
Q 008940           72 NKNQIVECNALPTLILM-------LRSED---SAIHYEAVGVIGNLVHSSPNI-KKE---------VLAAGALQPVIGLL  131 (548)
Q Consensus        72 ~~~~~~~~g~i~~Lv~l-------l~~~~---~~v~~~a~~~L~~l~~~~~~~-~~~---------~~~~g~i~~L~~ll  131 (548)
                      ........ .++.++.+       +.+++   .+.....++++..++...... .+.         -.-...++.++.+.
T Consensus       279 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~  357 (971)
T 2x1g_F          279 NYPKTAFV-LIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCT  357 (971)
T ss_dssp             GCHHHHHH-HHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHH-HHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHH
Confidence            11111111 23333332       23334   367777788887776432221 100         00113455555555


Q ss_pred             hc-----CChHHHHHHHHHHHHhhcCC---------chhHHHH--HhcCChHHHHHhhCCC--------CH-------HH
Q 008940          132 SS-----CCSESQREAALLLGQFAATD---------SDCKVHI--VQRGAVRPLIEMLQSP--------DV-------QL  180 (548)
Q Consensus       132 ~~-----~~~~~~~~a~~~L~~l~~~~---------~~~~~~~--~~~g~v~~L~~ll~~~--------~~-------~v  180 (548)
                      ..     .++++...+++.+..++...         +.....+  .-..+++.++..+..+        ++       ..
T Consensus       358 ~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~  437 (971)
T 2x1g_F          358 DKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCY  437 (971)
T ss_dssp             HCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHH
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHH
Confidence            33     46778889998887776410         1111111  1123455555555321        11       35


Q ss_pred             HHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcC-----CChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccc
Q 008940          181 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-----KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGE  255 (548)
Q Consensus       181 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~  255 (548)
                      |..+..+|..++...+.  .+.. -.++.+...+.+     .+...++.++.+++.++.......               
T Consensus       438 R~~~~~~l~~~~~~~~~--~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~---------------  499 (971)
T 2x1g_F          438 RQDISDTFMYCYDVLND--YILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE---------------  499 (971)
T ss_dssp             HHHHHHHHHHHHTTCTT--HHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------------------
T ss_pred             HHHHHHHHHHHHHHHhH--HHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh---------------
Confidence            66677777777654331  1110 112222333332     466788888999999876432100               


Q ss_pred             hhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHH---H--hhhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHHHHhh
Q 008940          256 FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM---R--VAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLL  329 (548)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll---~--~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L~~ll  329 (548)
                                            ...++.++.++   .  +.++.+|..++++++.++..- .+.+. + ...++.|+..+
T Consensus       500 ----------------------~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~-l-~~vl~~l~~~l  555 (971)
T 2x1g_F          500 ----------------------KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY-I-PPAINLLVRGL  555 (971)
T ss_dssp             -----------------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C-H-HHHHHHHHHHH
T ss_pred             ----------------------hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH-H-HHHHHHHHHHh
Confidence                                  01222333322   2  237889999999999987531 11111 1 24567777777


Q ss_pred             cCCCCccchhhHHHHHHHhhhc
Q 008940          330 GSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       330 ~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      +   +.++..|+.++.++++..
T Consensus       556 ~---~~v~~~A~~al~~l~~~~  574 (971)
T 2x1g_F          556 N---SSMSAQATLGLKELCRDC  574 (971)
T ss_dssp             H---SSCHHHHHHHHHHHHHHC
T ss_pred             C---hHHHHHHHHHHHHHHHHH
Confidence            3   789999999999999764

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=96.05  E-value=0.007  Score=48.60  Aligned_cols=84  Identities=19%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             CCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCC----CCCCCCCceecCCCCHHHHHHHHHHHhcCccccchH-hHHH
Q 008940          379 TLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQD  453 (548)
Q Consensus       379 ~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~  453 (548)
                      ...-|.+.|||..|...+..|.....   .|+...    ......+.+-++ =++..|+.+|+|+-+|++.++.+ .+..
T Consensus        33 ~~~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFiD-Rdp~~F~~ILnflR~G~l~~p~~~~~~~  108 (140)
T 2nz0_B           33 QDELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFFD-RDPEVFRCVLNFYRTGKLHYPRYECISA  108 (140)
T ss_dssp             CCCEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEEC-SCHHHHHHHHHHHHHSSBCCCTTSCHHH
T ss_pred             CCCEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEEe-CCcHHHHHHHHHHhcCCcCCCCCcCHHH
Confidence            34568899999999999999976532   344321    111234466664 59999999999999999987654 4789


Q ss_pred             HHHHHHHhChHhH
Q 008940          454 LLRAADQYLLEGL  466 (548)
Q Consensus       454 ll~~a~~~~~~~l  466 (548)
                      +++-|++|+++.+
T Consensus       109 l~eEa~fy~i~~l  121 (140)
T 2nz0_B          109 YDDELAFYGILPE  121 (140)
T ss_dssp             HHHHHHHHTCCGG
T ss_pred             HHHHHHHcCCChH
Confidence            9999999999886

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=95.76  E-value=0.16  Score=55.59  Aligned_cols=332  Identities=10%  Similarity=-0.006  Sum_probs=171.7

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCH-HHHHHHHHHHHHhhcc--Ccc--------h-----h
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFK--NDE--------N-----K   73 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~--~~~--------~-----~   73 (548)
                      +-++.+.+.++..+.........    .+.++.++.+++.++. ......+++|..+.+.  +..        .     +
T Consensus       104 ~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lk  179 (980)
T 3ibv_A          104 AYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVK  179 (980)
T ss_dssp             THHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHH
Confidence            46777777777777743211111    2456677777776544 3445556666644331  100        1     2


Q ss_pred             hHhhhcC---ChHHHHHHhc----cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHH
Q 008940           74 NQIVECN---ALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL  146 (548)
Q Consensus        74 ~~~~~~g---~i~~Lv~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  146 (548)
                      +.+.+..   +.+....+|.    ..++.++..++.++......-+-  ..+.+.+.++.+.+++.+  ++++..|+.+|
T Consensus       180 d~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL  255 (980)
T 3ibv_A          180 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI--EELRCAACETM  255 (980)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS--HHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC--hHHHHHHHHHH
Confidence            2222211   1333344443    36888999999999998765332  455666788888888876  78999999999


Q ss_pred             HHhhcCCch--hHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhc------CCcc--------hhhhHhcCChH
Q 008940          147 GQFAATDSD--CKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQ------DMHN--------QAGIAHNGGLV  208 (548)
Q Consensus       147 ~~l~~~~~~--~~~~~~~~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~------~~~~--------~~~~~~~~~l~  208 (548)
                      ..+.+....  .+..++..=.+...+..+.  .+|.+..+..++.+..++.      ..+.        +..-.-.+.++
T Consensus       256 ~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~  335 (980)
T 3ibv_A          256 TEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFP  335 (980)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHH
T ss_pred             HHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHH
Confidence            998865432  2222222101111222222  4566666555544443321      1110        00011125677


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHhcccC----Cc---chHH-------HHHhcCccccc---ccchhh----------hhh
Q 008940          209 PLLKLLDSKNGSLQHNAAFALYGLADN----ED---NVAD-------FIRVGGVQKLQ---DGEFIV----------QAT  261 (548)
Q Consensus       209 ~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~---~~~~-------~~~~g~i~~L~---~~~~~~----------~~~  261 (548)
                      .++.++.+++.++...++..+..+...    +.   ....       ++.. .+..+.   +..+..          ..-
T Consensus       336 ~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~-li~k~~yp~d~~~~~~~d~ed~~~F~e~  414 (980)
T 3ibv_A          336 YLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEA-IIKKMKYDESQEWDDDPDSEEEAEFQEM  414 (980)
T ss_dssp             HHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH-HHHTTSCCTTCCCCCCSSSSTHHHHHHH
T ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHH-HHHHccCCCccccccccchhHHHHHHHH
Confidence            788888888888777666665554321    10   1111       1110 111110   001110          011


Q ss_pred             hHHHHHHHHHHHHhhhhhhhH----HHHHHHH-------hhhhhhhhhHHHHhhhccCCCc--ccee----eecCCchHH
Q 008940          262 KDCVAKTLKRLEEKIHGRVLN----HLLYLMR-------VAEKGVQRRVALALAHLCSPDD--QRTI----FIDGGGLEL  324 (548)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~----~L~~ll~-------~~~~~~~~~a~~aL~~l~~~~~--~~~~----~~~~~~i~~  324 (548)
                      ..+.....+.+..+....++.    .+..++.       +.++..++.++.+|+.++.+-.  ....    -.-...++.
T Consensus       415 Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~l  494 (980)
T 3ibv_A          415 RKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQI  494 (980)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHH
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Confidence            122222223333333333444    4444332       3467788999999999987522  1111    011124566


Q ss_pred             HHHhhc-----CCCCccchhhHHHHHHHhhh
Q 008940          325 LLGLLG-----STNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       325 L~~ll~-----~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +..++.     .+++.|+..+++++.+.++-
T Consensus       495 l~~ll~s~i~~~~hp~V~~~~~~~l~rys~~  525 (980)
T 3ibv_A          495 LALVTTSQVCRHPHPLVQLLYMEILVRYASF  525 (980)
T ss_dssp             HHHHHHSSTTTCCCHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            666665     67788899999999998764

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.68  E-value=0.23  Score=54.62  Aligned_cols=293  Identities=12%  Similarity=0.074  Sum_probs=153.6

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh--cCChHHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLI   86 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv   86 (548)
                      .|.++..+++++...+..-..... .. ...++.|+..+++  +.++..|+.++.+++....   ..+..  ..++..+.
T Consensus       502 ~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~---~~l~p~~~~il~~l~  574 (963)
T 2x19_B          502 NVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECK---YDLPPYAANIVAVSQ  574 (963)
T ss_dssp             SHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG---GGCTTTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHH
Confidence            567899999999998852122222 22 3678888888854  8899999999999996322   22221  12344455


Q ss_pred             HHhcc--CChHHHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhhh----cC-ChHHHHH---HHHHHHHhhcCC--
Q 008940           87 LMLRS--EDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLS----SC-CSESQRE---AALLLGQFAATD--  153 (548)
Q Consensus        87 ~ll~~--~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~----~~-~~~~~~~---a~~~L~~l~~~~--  153 (548)
                      .++..  .+...+..+..+++.++...+ +...... ...++.+...+.    .. +++.+..   ...+|+.+...-  
T Consensus       575 ~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~  653 (963)
T 2x19_B          575 DVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDI  653 (963)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            55554  356889999999999876443 3222222 224444444332    22 3444433   233333333210  


Q ss_pred             --ch-----------------hHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHH
Q 008940          154 --SD-----------------CKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK  212 (548)
Q Consensus       154 --~~-----------------~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~  212 (548)
                        +.                 .........+++.+..++..  .++.+.+.++.++..+...-...  +  ...++.++.
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~--~--~~~l~~~~~  729 (963)
T 2x19_B          654 SHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD--F--APMVPQLCE  729 (963)
T ss_dssp             SCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST--T--GGGHHHHHH
T ss_pred             CcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc--c--cccHHHHHH
Confidence              00                 00111223455555555542  46788999999999886432211  0  112444333


Q ss_pred             hh----cC-CChhHHHHHHHHHHhccc----CCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHH
Q 008940          213 LL----DS-KNGSLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH  283 (548)
Q Consensus       213 ll----~~-~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (548)
                      .+    .. ..+.    .+..+..+..    ++.....+.+                               .-..++..
T Consensus       730 ~l~~~~~~~~~~~----~l~l~~~li~~f~~~~~~~~~~~~-------------------------------~l~~~~~~  774 (963)
T 2x19_B          730 MLGRMYSTIPQAS----ALDLTRQLVHIFAHEPAHFPPIEA-------------------------------LFLLVTSV  774 (963)
T ss_dssp             HHHHHHHHSCCHH----HHHHHHHHHHHHTTCTTTCHHHHH-------------------------------HHHHHHHH
T ss_pred             HHHHHHHcCCccH----HHHHHHHHHHHhCCCcchHHHHHH-------------------------------HHHHHHHH
Confidence            32    21 2222    2233333322    1111111100                               00112344


Q ss_pred             HHHHHHh---hhhhhhhhHHHHhhhccCCCccceeeecC-----CchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          284 LLYLMRV---AEKGVQRRVALALAHLCSPDDQRTIFIDG-----GGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       284 L~~ll~~---~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-----~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      .+.++..   .+++++......+..+.......  +...     ..++.+...+.+.+..+...++..+..+...
T Consensus       775 ~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          775 TLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL--FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             HHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG--GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH--HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence            4444443   35788888877777776432211  1111     2344556667788888888999999988764

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=95.66  E-value=0.0079  Score=45.18  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=60.9

Q ss_pred             EEEEeCCeEEEchHHHHhcccH-HHHhhhcC-CCCCCCCCceecCCCCHHHHHHHHHHHhc-CccccchH-hHHHHHHHH
Q 008940          383 VTFLVEGRRFYAHRICLLASSD-AFRAMFDG-GYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLLRAA  458 (548)
Q Consensus       383 v~~~~~~~~~~~h~~il~~~s~-~f~~~~~~-~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~~~-~~~~ll~~a  458 (548)
                      |.+.|||..|...+..|..... .+..|+.. .......+.+-+ |=+|..|+.+|+|+-+ |++..+.+ .+..+++-|
T Consensus         3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea   81 (100)
T 1t1d_A            3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI   81 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred             EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence            6788999999999999975422 23333322 111223456666 4589999999999998 89877644 468899999


Q ss_pred             HHhChHhHH
Q 008940          459 DQYLLEGLK  467 (548)
Q Consensus       459 ~~~~~~~l~  467 (548)
                      ++|+++++.
T Consensus        82 ~fy~i~~~~   90 (100)
T 1t1d_A           82 KFYELGENA   90 (100)
T ss_dssp             HHTTCCHHH
T ss_pred             HHcCCCHHH
Confidence            999998744

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.52  E-value=0.24  Score=43.23  Aligned_cols=143  Identities=15%  Similarity=0.104  Sum_probs=97.4

Q ss_pred             hHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHH-hhhcCChHHHHHHHHHHHHhhc-CCchhHHH
Q 008940           82 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAA-TDSDCKVH  159 (548)
Q Consensus        82 i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~  159 (548)
                      ++....+.+++..++|..|+.+|+.+ ...+         ..++.+.. +..+++-.|++.++.++..++. .+++    
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----  138 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----  138 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence            33444555677889999999999888 3211         14566665 5567778999999999999984 3333    


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccC-Ccc
Q 008940          160 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDN  238 (548)
Q Consensus       160 ~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~  238 (548)
                          ..++.+....+++++.+|..|...+.--+.....+.  .-.-.++.+-.+..+++.-|+....+.|..++.. ++.
T Consensus       139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence                267788899999999999999887754332211110  0111344455566677888999999999999974 555


Q ss_pred             hHHHHH
Q 008940          239 VADFIR  244 (548)
Q Consensus       239 ~~~~~~  244 (548)
                      ...+++
T Consensus       213 V~~~~~  218 (240)
T 3l9t_A          213 VKIELK  218 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            455443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.22  E-value=0.16  Score=44.37  Aligned_cols=132  Identities=14%  Similarity=0.066  Sum_probs=92.9

Q ss_pred             HhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH-HhccCChHHHHHHHHHHHHhhc-CChhHHHHHHhcC
Q 008940           45 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAAG  122 (548)
Q Consensus        45 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g  122 (548)
                      .+.+++..++|..|+..|+.+ .. .        ...++.+.. +-.+++..|++.++.++..++. ..++        .
T Consensus        78 ~L~~~~~deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~  139 (240)
T 3l9t_A           78 LAYQSDVYQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------K  139 (240)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------T
T ss_pred             HHHhCcchHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------H
Confidence            455667789999999988877 31 1        124555555 5557899999999999999974 3343        2


Q ss_pred             ChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940          123 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       123 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                      .++.+.....+++..+++.|...+.--+.. +....  ....+++.+-.+..+++.-|+...++.|..+++..+.
T Consensus       140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence            677888999999999999998876443322 11100  0012456666666778889999999999999987654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=95.07  E-value=0.078  Score=58.24  Aligned_cols=140  Identities=9%  Similarity=0.044  Sum_probs=88.4

Q ss_pred             CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-----CChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           92 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        92 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      .++..++.++++++.++.+..+-...-.-..+++.|+.++.+     ....++..++|+++..+..-......+  ..++
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence            579999999999999987654322222223467888888764     223355677899988764322222211  2466


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHh------cCChHHHHH----hhcCCChhHHHHHHHHHHhcccC
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH------NGGLVPLLK----LLDSKNGSLQHNAAFALYGLADN  235 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~l~~L~~----ll~~~~~~v~~~a~~~L~~l~~~  235 (548)
                      +.|+..+.++++.++..|++++.++|....  ..+..      ...++.+++    ....-++.-...+..+++.+...
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~--~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHH--HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            677777877889999999999999997533  22321      112333333    33334555566777777777654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.98  E-value=0.67  Score=42.62  Aligned_cols=179  Identities=15%  Similarity=0.222  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhc-cC
Q 008940           14 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SE   92 (548)
Q Consensus        14 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~-~~   92 (548)
                      .++-..|.-|. ++...-.-+++.+|+..+....+-++.++.+.++..|...+..  ...-..--.+.++.++..++ ++
T Consensus       261 tR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa--ksL~~t~L~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          261 IRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA--KALAKTPLENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC--GGGGTSCCTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch--HHHhhccccccchHHHHHhccCC
Confidence            34555555555 5555566678889999999999999999999999999998862  22211112346788888876 78


Q ss_pred             ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-------hHHHHHHHHHHHHhhc--------------
Q 008940           93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-------SESQREAALLLGQFAA--------------  151 (548)
Q Consensus        93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~~a~~~L~~l~~--------------  151 (548)
                      +.++.......|.|...+....++..+..|+|+.|...+....       ..-+..+|.+++|-.+              
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N  417 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN  417 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence            9999999999999999888888999999999999988876432       2234445554444321              


Q ss_pred             -----CCchhHHH---HHhcCChHHHHHhhCCCC------HHHHHHHHHHHHHhhcCC
Q 008940          152 -----TDSDCKVH---IVQRGAVRPLIEMLQSPD------VQLREMSAFALGRLAQDM  195 (548)
Q Consensus       152 -----~~~~~~~~---~~~~g~v~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~  195 (548)
                           -.+..++.   +.+..++..|+.+|+-+.      .++|...++.+.-+...+
T Consensus       418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP  475 (619)
T 3c2g_A          418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTP  475 (619)
T ss_dssp             SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCT
T ss_pred             CccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCC
Confidence                 01222222   334456777777776432      245555555555454443

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=94.88  E-value=0.095  Score=57.55  Aligned_cols=143  Identities=10%  Similarity=0.055  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-----CChHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940           50 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  124 (548)
Q Consensus        50 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  124 (548)
                      .++..++.++.+++.++.+-.+....-.-..+++.|+.++.+     +...++..++++++..+..-....+ . -...+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-L~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-HHHHH
Confidence            579999999999999997533332322223367788888763     3344566788999888643211111 1 12345


Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh------cCChH----HHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 008940          125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVR----PLIEMLQSPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~g~v~----~L~~ll~~~~~~v~~~a~~~L~~l~~~  194 (548)
                      ..++..+.++++.++..|++++.++|.   +++..+..      ...++    .+......-++.-+..+..+++.+...
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            556666666778899999999999994   44444432      11233    333444445666778888889988876


Q ss_pred             Ccc
Q 008940          195 MHN  197 (548)
Q Consensus       195 ~~~  197 (548)
                      .+.
T Consensus       620 ~~~  622 (1023)
T 4hat_C          620 ERS  622 (1023)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.63  E-value=0.84  Score=42.11  Aligned_cols=167  Identities=14%  Similarity=0.073  Sum_probs=97.5

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH----HHhc-cCChHHHHHHHHHHHHhhcCChhH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI----LMLR-SEDSAIHYEAVGVIGNLVHSSPNI  114 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv----~ll~-~~~~~v~~~a~~~L~~l~~~~~~~  114 (548)
                      +..+.++++- ..+.+.-++..++-++. ++.....+.+.+.-..++    ..+. ...+.-+..++++++|+... +..
T Consensus       105 l~~l~kil~W-P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g  181 (304)
T 3ebb_A          105 LQILWKAINC-PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG  181 (304)
T ss_dssp             HHHHHHHHTS-CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred             HHHHHHHHcC-CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence            3455566533 23456666777776665 455555554433333333    3333 23466789999999999866 545


Q ss_pred             HHHHHhc--CChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 008940          115 KKEVLAA--GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRL  191 (548)
Q Consensus       115 ~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l  191 (548)
                      ++.+...  .+++.+...+.+.+..++..++..+.|++......+..-....++..+..+++. .+++....++.+|++|
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL  261 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL  261 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            5655542  344555555556677888888889999874311100000011134444555543 6889999999999999


Q ss_pred             hcCCcchhhhHhcCChHH
Q 008940          192 AQDMHNQAGIAHNGGLVP  209 (548)
Q Consensus       192 ~~~~~~~~~~~~~~~l~~  209 (548)
                      ...+.....+.+.-++..
T Consensus       262 ~~~~~~~~~lak~l~~~~  279 (304)
T 3ebb_A          262 ISDDSNAVQLAKSLGVDS  279 (304)
T ss_dssp             HTTCHHHHHHHHHTTHHH
T ss_pred             HhCChhHHHHHHHcCHHH
Confidence            976554444444433433

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.60  E-value=0.25  Score=47.84  Aligned_cols=164  Identities=18%  Similarity=0.092  Sum_probs=107.4

Q ss_pred             cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHH
Q 008940           49 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  128 (548)
Q Consensus        49 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  128 (548)
                      .++...+..|++.+.....+=|+..+.     ++..+++++.+++..+|..|++.|..+|.+ ... .     .+...|+
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i-~-----kiaDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL-P-----RVADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH-H-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh-h-----hHHHHHH
Confidence            456899999999999998866666555     688899999999999999999999999987 332 2     2466889


Q ss_pred             HhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--cchhhhHhcCC
Q 008940          129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HNQAGIAHNGG  206 (548)
Q Consensus       129 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~  206 (548)
                      ++|+..++.-...+-.+|..+...++.        +.+..+...+..+++.+|+.++..|..=...-  +....-.+.-.
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            999988877666666777777654443        23444555555567889988877776533221  11111122223


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHhc
Q 008940          207 LVPLLKLLDSKNGSLQHNAAFALYGL  232 (548)
Q Consensus       207 l~~L~~ll~~~~~~v~~~a~~~L~~l  232 (548)
                      +..+...|++-..+=-......|..+
T Consensus       179 ~~~ikK~L~DVT~~EF~L~m~lL~~l  204 (507)
T 3u0r_A          179 LTESKKVLEDVTGEEFVLFMKILSGL  204 (507)
T ss_dssp             HHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhc
Confidence            44455556544433233344455444

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=94.42  E-value=0.76  Score=50.49  Aligned_cols=136  Identities=17%  Similarity=0.107  Sum_probs=90.4

Q ss_pred             ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh---ccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940           48 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  124 (548)
Q Consensus        48 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  124 (548)
                      .+.++..++.++.+++.++.+-.+..     ...++.+++.+   .++++.++..++++++.++..-....  -.-..++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP--VMINSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH--HHHTTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH--HHHHHHH
Confidence            45678899999999999997533311     12344455444   24578899999999999975322111  1234688


Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--cCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCC
Q 008940          125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~  195 (548)
                      +.++..+.+  +.++..|+.++.+++.....   .+..  ..+++.+..++..  -+...+..+..+++.++...
T Consensus       532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~---~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          532 PLVLHALGN--PELSVSSVSTLKKICRECKY---DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHHHHHTTC--GGGHHHHHHHHHHHHHHTGG---GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhCC--chHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            888888865  88999999999999854322   1111  2234444455554  25678889999999988644

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.35  E-value=0.72  Score=44.71  Aligned_cols=121  Identities=18%  Similarity=0.118  Sum_probs=93.1

Q ss_pred             cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHH
Q 008940           91 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI  170 (548)
Q Consensus        91 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~  170 (548)
                      .++...+..|+..+.....+.|+.++.     ++..+++++.+.+..+|..|...|..+|.+  +...     .+...|.
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHH
Confidence            357899999999999999999998766     567999999999999999999999999966  3322     3668899


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHH
Q 008940          171 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY  230 (548)
Q Consensus       171 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  230 (548)
                      ++|+.+++.-....-.+|..+...++.       +.+..+...+.++++.+++.++..|.
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dpk-------~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDAK-------GTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcChH-------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence            999998887777777777776543321       23555555555667888887777664

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.31  E-value=3.2  Score=36.56  Aligned_cols=125  Identities=14%  Similarity=0.189  Sum_probs=84.6

Q ss_pred             hhhHhhhcCChHHHHHHhcc-----------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHH
Q 008940           72 NKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR  140 (548)
Q Consensus        72 ~~~~~~~~g~i~~Lv~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~  140 (548)
                      ..+.+ ..+|+..|+..|..           .+.+.+..++.+|..+..........+...+.+..+...+.++.+.++.
T Consensus        36 Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~  114 (233)
T 2f31_A           36 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI  114 (233)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHH
T ss_pred             HHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence            34444 35677777777651           1356788899999999766555555555567899999999999999999


Q ss_pred             HHHHHHHHhhcCCc-hh-HHHH----------HhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcc
Q 008940          141 EAALLLGQFAATDS-DC-KVHI----------VQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       141 ~a~~~L~~l~~~~~-~~-~~~~----------~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                      .+...|..+|.... .. ...+          .+......++..+++ ++.+.+..+...+-.+....+.
T Consensus       115 ~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~d  184 (233)
T 2f31_A          115 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  184 (233)
T ss_dssp             HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCC
Confidence            99998888886543 12 2211          223456678888874 5566777776666666665543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=93.23  E-value=1.1  Score=41.30  Aligned_cols=130  Identities=12%  Similarity=0.064  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHHHHhhccCcchhhHhhhc--CChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHH--HHHHhcCChHH
Q 008940           51 DTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK--KEVLAAGALQP  126 (548)
Q Consensus        51 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~g~i~~  126 (548)
                      .+..+..+++++.|+-. ++..+..+...  .+++.+...+.+++..++..++.++.|++......+  +..  ...+..
T Consensus       161 ~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~  237 (304)
T 3ebb_A          161 KPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSL  237 (304)
T ss_dssp             CHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHH
T ss_pred             ChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHH
Confidence            46679999999999997 56666666543  244444555556788999999999999975321100  110  012334


Q ss_pred             HHHhhh-cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHH
Q 008940          127 VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREM  183 (548)
Q Consensus       127 L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~  183 (548)
                      +..++. ..+.+....++.+|+++...+...++.....|+-..+-..... ..+.+.+.
T Consensus       238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~  296 (304)
T 3ebb_A          238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC  296 (304)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence            444443 3568889999999999997654443333333443333333333 33444444

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=92.84  E-value=1.1  Score=49.88  Aligned_cols=176  Identities=12%  Similarity=0.086  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhc--cCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHh
Q 008940           12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML   89 (548)
Q Consensus        12 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll   89 (548)
                      .+..+..+|..++.-.+..   +. .-..+.+-+.+.  ..++..++.++.+++.++.+.......-.-..+++.++.+.
T Consensus       429 ~~~~~~~~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~  504 (1049)
T 3m1i_C          429 LYKSEREVLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT  504 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence            3445666777777433221   11 011233344443  35688999999999999864322211111112444444443


Q ss_pred             cc-----CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH---
Q 008940           90 RS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV---  161 (548)
Q Consensus        90 ~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---  161 (548)
                      ..     +.+.++..++++++..+..-....+ . -..+++.++..+.++++.++..|++++.+++..   ++..+.   
T Consensus       505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~-l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~---~~~~l~~~~  579 (1049)
T 3m1i_C          505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRTVILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQ  579 (1049)
T ss_dssp             TSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-H-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH---HTHHHHSCC
T ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHhHHH-H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHhhccc
Confidence            31     2344555688899887643211111 1 123577778888888899999999999999954   333332   


Q ss_pred             -------hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 008940          162 -------QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH  196 (548)
Q Consensus       162 -------~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  196 (548)
                             -..+++.+..++..-+.+-......+++.+....+
T Consensus       580 ~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          580 PRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             TTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence                   11233334444555444555666777777765443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.70  E-value=5.8  Score=37.90  Aligned_cols=178  Identities=15%  Similarity=0.154  Sum_probs=110.1

Q ss_pred             HHHHhhccCC-HHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhc-----------cCChHHHHHHHHHHHHhh
Q 008940           42 PLVELLEFTD-TKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR-----------SEDSAIHYEAVGVIGNLV  108 (548)
Q Consensus        42 ~L~~ll~~~~-~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~-----------~~~~~v~~~a~~~L~~l~  108 (548)
                      ..++.|.++. ..-....+..|..-.+.+ ......+. .+|+..|+.+|.           ..+...+..+++||..+.
T Consensus        70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm  148 (383)
T 3eg5_B           70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM  148 (383)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence            3455555432 222223344444333322 33445555 667888888875           124577888999999997


Q ss_pred             cCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc-hh-HHHH----------HhcCChHHHHHhhCC-
Q 008940          109 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DC-KVHI----------VQRGAVRPLIEMLQS-  175 (548)
Q Consensus       109 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~----------~~~g~v~~L~~ll~~-  175 (548)
                      .........+.....+..+...+.+..+.++..+...|..+|.... .+ ...+          .+..-...++..+++ 
T Consensus       149 N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~  228 (383)
T 3eg5_B          149 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  228 (383)
T ss_dssp             SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred             cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc
Confidence            6655555555567889999999999999999999999998886543 22 2211          233567788888887 


Q ss_pred             CCHHHHHHHHHHHHHhhcCCcc---h----hhhHhcCChHHHHHhhcCC-ChhH
Q 008940          176 PDVQLREMSAFALGRLAQDMHN---Q----AGIAHNGGLVPLLKLLDSK-NGSL  221 (548)
Q Consensus       176 ~~~~v~~~a~~~L~~l~~~~~~---~----~~~~~~~~l~~L~~ll~~~-~~~v  221 (548)
                      .+.+.+..+...+-.+....+.   |    ..+.. -|+..++.-++.. ++.+
T Consensus       229 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~-~Gl~~il~~lr~~~~~~L  281 (383)
T 3eg5_B          229 TSIALKVGCLQLINALITPAEELDFRVHIRSELMR-LGLHQVLQELREIENEDM  281 (383)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-TTHHHHHHHHTTSCCHHH
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CChHHHHHHHhcCCChhH
Confidence            5667777777777667665543   2    22334 3444544445543 4433

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=91.88  E-value=0.87  Score=50.53  Aligned_cols=102  Identities=10%  Similarity=0.105  Sum_probs=65.2

Q ss_pred             CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-----CChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           92 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        92 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      .++..++.++++++.++.......+.-.-..+++.+..+...     +.+.++..++++++..+.........+  ..++
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence            578999999999999986543321111112244445444322     223344468888888764322222222  2467


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  195 (548)
                      +.++..+.++++.++..|+.++.+++...
T Consensus       543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~  571 (1049)
T 3m1i_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC  571 (1049)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            77888888889999999999999999753

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=91.07  E-value=1.8  Score=39.85  Aligned_cols=134  Identities=10%  Similarity=0.100  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhh-c
Q 008940           55 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-S  133 (548)
Q Consensus        55 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~  133 (548)
                      ..++...|.-+- ++....+.+++.+++..+...++-++.++.+..+..|...+.. ...... --...+|.+++.+. +
T Consensus       260 vtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~t-~L~e~LPFi~~~i~~h  336 (619)
T 3c2g_A          260 IIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAKT-PLENILPFLLRLIEIH  336 (619)
T ss_dssp             HHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGTS-CCTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhhc-cccccchHHHHHhccC
Confidence            344444444444 5777888999999999999999999999999999999998533 222111 01245788887775 5


Q ss_pred             CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHh
Q 008940          134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-------PDVQLREMSAFALGRL  191 (548)
Q Consensus       134 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l  191 (548)
                      ++.++.......|+|...+....+......|.++.|-..+..       .+..-+..+|+.++|.
T Consensus       337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~  401 (619)
T 3c2g_A          337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC  401 (619)
T ss_dssp             CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence            678899999999999998887888888888999988887643       2344566666666664

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=90.01  E-value=3.4  Score=37.48  Aligned_cols=133  Identities=11%  Similarity=0.079  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHhhhChhhHHHHHh--cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhc--CChHHHH
Q 008940           11 SVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLI   86 (548)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv   86 (548)
                      +....|+..|..++ ++...-..|.+  ...+..|+ +.....+.+++.|+++|+...+.||.....+.+.  ..+..+.
T Consensus        43 ~~le~aLD~L~ElS-HDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf  120 (315)
T 3qml_C           43 ARLEDSFDRIMEFA-HDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM  120 (315)
T ss_dssp             HHHHHHHHHHGGGT-TSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHhh-hhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence            45778899999999 56666555554  22333333 3344568899999999999999999988877763  4555555


Q ss_pred             HHhcc-------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcC--ChHHHHHHHHHHHHhh
Q 008940           87 LMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFA  150 (548)
Q Consensus        87 ~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~  150 (548)
                      .-|..       ....++..-+.+|..|..+....     ...++..|.+++...  ++.++..++..+..+-
T Consensus       121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            44432       24467788888898888765322     145678888888766  7888888888777664

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.97  E-value=13  Score=35.53  Aligned_cols=148  Identities=16%  Similarity=0.220  Sum_probs=95.1

Q ss_pred             hhHhhhcCChHHHHHHhcc-----------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHH
Q 008940           73 KNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE  141 (548)
Q Consensus        73 ~~~~~~~g~i~~Lv~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~  141 (548)
                      ...+. .+|+..|+..|..           .+......+++||..+..........+...+++..+...+.+..+.++..
T Consensus        41 v~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~  119 (386)
T 2bnx_A           41 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  119 (386)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHH
T ss_pred             HHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence            33443 4567777776641           13567888999999997665666566666788999999999888999999


Q ss_pred             HHHHHHHhhcCCc-hh-HHHH----------HhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcc-------hhhh
Q 008940          142 AALLLGQFAATDS-DC-KVHI----------VQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN-------QAGI  201 (548)
Q Consensus       142 a~~~L~~l~~~~~-~~-~~~~----------~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-------~~~~  201 (548)
                      ++..|..+|.... .. ...+          .+......++..+.. .+.+.+..+...+-.+...++.       |..+
T Consensus       120 vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef  199 (386)
T 2bnx_A          120 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL  199 (386)
T ss_dssp             HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            9988888886543 12 1111          223456678888874 5666777777767667666553       2233


Q ss_pred             HhcCChHHHHHhhcC-CChhHH
Q 008940          202 AHNGGLVPLLKLLDS-KNGSLQ  222 (548)
Q Consensus       202 ~~~~~l~~L~~ll~~-~~~~v~  222 (548)
                      .. -|+..++.-++. .++.+.
T Consensus       200 ~~-~GL~~il~~Lr~~~~~~L~  220 (386)
T 2bnx_A          200 MR-LGLHQVLQELREIENEDMK  220 (386)
T ss_dssp             HH-TTHHHHHHHHTTCCCHHHH
T ss_pred             HH-CChHHHHHHHhccCChhHH
Confidence            34 445555555544 444443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=89.32  E-value=5.1  Score=35.24  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=87.3

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-ch-hhHh----------
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-EN-KNQI----------   76 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------   76 (548)
                      ..+.+..++.||..+..........+...+.+..|...|.++++.++..++..|..+|..+. +. ...+          
T Consensus        67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~  146 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  146 (233)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence            35778899999999996555666666666788899999999999999999999998886433 22 2222          


Q ss_pred             hhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChh------HHHHHHhcCChHHHHHhhhcCChHHH
Q 008940           77 VECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN------IKKEVLAAGALQPVIGLLSSCCSESQ  139 (548)
Q Consensus        77 ~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~g~i~~L~~ll~~~~~~~~  139 (548)
                      .+..-...+++.++ +.+.+.+..++..+..+....++      .|..+...|..+.+-++-...++++.
T Consensus       147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~  216 (233)
T 2f31_A          147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK  216 (233)
T ss_dssp             HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHH
T ss_pred             CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHH
Confidence            12234556777776 44667777777777777655443      35555666666555444444444443

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=88.53  E-value=5  Score=36.42  Aligned_cols=136  Identities=12%  Similarity=0.021  Sum_probs=87.7

Q ss_pred             ChHHHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--cCChHHH
Q 008940           93 DSAIHYEAVGVIGNLVHSSPNIKKEVL-AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPL  169 (548)
Q Consensus        93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~v~~L  169 (548)
                      +.+--..|+..|..++.+-.---+++- +...+..|+ +.....+.+++.++++++...+.+|.....+.+  ...+..+
T Consensus        41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            344567788888888755332223332 223344444 334455778999999999988998888776655  2344444


Q ss_pred             HHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCC--ChhHHHHHHHHHHhcc
Q 008940          170 IEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLA  233 (548)
Q Consensus       170 ~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~  233 (548)
                      +.-|..       ....++..-+.+|..|..++.   .+ ...++..|.+++...  ++.++..++..+..+-
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            433322       234677888999999988762   22 235677788887766  7888888888777664

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=87.97  E-value=8.5  Score=42.48  Aligned_cols=158  Identities=13%  Similarity=0.113  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHHhhcc----CcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChH
Q 008940           50 TDTKVQRAAAGALRTLAFK----NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ  125 (548)
Q Consensus        50 ~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  125 (548)
                      .++.++..++.+++.++..    ++......++ .+.+.+.+.+...+.+-+..++++|+|+..  +         ..++
T Consensus       407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~  474 (1056)
T 1lsh_A          407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIK  474 (1056)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC--h---------hHHH
Confidence            3466777777777777641    1111111111 123334444556678888899999999953  3         2466


Q ss_pred             HHHHhhhc-------CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCCc
Q 008940          126 PVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQLREMSAFALGRLAQDMH  196 (548)
Q Consensus       126 ~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~  196 (548)
                      .+..++..       ....++..|+++|.+++...+..        +-+.++++.  ...++++|..|+..|....  ++
T Consensus       475 ~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~--P~  544 (1056)
T 1lsh_A          475 KIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFESK--PS  544 (1056)
T ss_dssp             HHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC--CC
T ss_pred             HHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC--cC
Confidence            77777642       12468888999999997544332        225577777  4578899998887775432  21


Q ss_pred             chhhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHhcccCC
Q 008940          197 NQAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       197 ~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~  236 (548)
                       .      ..+..+...+.. .+..|.......|.+++...
T Consensus       545 -~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          545 -V------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             -H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             -H------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence             1      123344545543 56667667777777776543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=87.69  E-value=14  Score=41.50  Aligned_cols=176  Identities=11%  Similarity=0.040  Sum_probs=96.8

Q ss_pred             hhHHHHHHHHHHHHHhhh-----ChhhHHHHHhcCCchHHHHhhc---cCCHHHHHHHHHHHHHhhccC-cchhhHhhhc
Q 008940            9 VNSVIRRAADAITNLAHE-----NSSIKTRVRMEGGIPPLVELLE---FTDTKVQRAAAGALRTLAFKN-DENKNQIVEC   79 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~   79 (548)
                      .+.++..|+..|.+....     +++.+..+. ..++..+...-.   .+...++...+.++..++..+ ++     ...
T Consensus        60 ~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp  133 (1204)
T 3a6p_A           60 VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWP  133 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCT
T ss_pred             CHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cch
Confidence            456777777777776532     333344333 222222222211   135778888888888887631 21     134


Q ss_pred             CChHHHHHHhccCChHHHHHHHHHHHHhhcCC-------hh----HHHHHHhc--CChHHHHHhhhc-------------
Q 008940           80 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-------PN----IKKEVLAA--GALQPVIGLLSS-------------  133 (548)
Q Consensus        80 g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~-------~~----~~~~~~~~--g~i~~L~~ll~~-------------  133 (548)
                      +.++.|+.++.+ ++..++.++.+|..++.+.       ..    .++.+...  .+++.+..++.+             
T Consensus       134 ~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~  212 (1204)
T 3a6p_A          134 DMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTS  212 (1204)
T ss_dssp             THHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCST
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            677888888875 5566788888888886431       11    11122221  122333333332             


Q ss_pred             ------CChHHHHHHHHHHHHhhcCCchhHHHHHhcC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940          134 ------CCSESQREAALLLGQFAATDSDCKVHIVQRG--AVRPLIEMLQSPDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       134 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  195 (548)
                            .+..+...+..++.+....-+.  ..+.+..  .++.+..++.  +++++..|+.+|..+....
T Consensus       213 ~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~  278 (1204)
T 3a6p_A          213 QESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK  278 (1204)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence                  1123455556666655433221  1223322  6677776665  4679999999999999643

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=87.38  E-value=7.9  Score=36.97  Aligned_cols=129  Identities=19%  Similarity=0.233  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-ch-hhHh----------h
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-EN-KNQI----------V   77 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------~   77 (548)
                      ...+..++.||..+..........+.....+..|...+.+.++.++..++..|..+|.... ++ ...+          .
T Consensus       134 ~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~  213 (383)
T 3eg5_B          134 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  213 (383)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhC
Confidence            3677889999999986555666666777788999999999999999999999999887443 33 2222          2


Q ss_pred             hcCChHHHHHHhcc-CChHHHHHHHHHHHHhhcCChh------HHHHHHhcCChHHHHHhhhcCChHH
Q 008940           78 ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------IKKEVLAAGALQPVIGLLSSCCSES  138 (548)
Q Consensus        78 ~~g~i~~Lv~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~g~i~~L~~ll~~~~~~~  138 (548)
                      +..-...++..++. .+.+.+..++..+..+....++      .|..+...|..+.+-.+=...++++
T Consensus       214 e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L  281 (383)
T 3eg5_B          214 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  281 (383)
T ss_dssp             TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred             CCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhH
Confidence            23346778888875 5778888777777777665443      3455566676665555333334443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=85.78  E-value=4.7  Score=44.51  Aligned_cols=125  Identities=14%  Similarity=0.149  Sum_probs=86.4

Q ss_pred             HHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc-------CChHHHHHHHHHHHHhhcCChhHHH
Q 008940           44 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        44 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      .+.+...+.+.+..++++|+|+..  +         +.++.|.+++..       ....++..|+++|++++...+..  
T Consensus       446 ~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--  512 (1056)
T 1lsh_A          446 SQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--  512 (1056)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--
T ss_pred             HHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--
Confidence            344456778888999999999985  3         256677777642       24578899999999998654432  


Q ss_pred             HHHhcCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 008940          117 EVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       117 ~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~  193 (548)
                            +-+.+.++..  ..++++|..|...|..-.   |..       ..+..+...+.. ++.+|.......|.+++.
T Consensus       513 ------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~  576 (1056)
T 1lsh_A          513 ------VQEIVLPIFLNVAIKSELRIRSCIVFFESK---PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSR  576 (1056)
T ss_dssp             ------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC---cCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence                  2346777774  456888888887775432   322       234556666665 678899999999999997


Q ss_pred             CCcc
Q 008940          194 DMHN  197 (548)
Q Consensus       194 ~~~~  197 (548)
                      ....
T Consensus       577 s~~P  580 (1056)
T 1lsh_A          577 SSNP  580 (1056)
T ss_dssp             CCSG
T ss_pred             cCCc
Confidence            6644

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=84.60  E-value=15  Score=35.15  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=89.3

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-ch-hhHh----------
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-EN-KNQI----------   76 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------   76 (548)
                      ..+.+..++.||..+..........+...+++..|...+.++++.++..++..|..+|.... +. ...+          
T Consensus        71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~  150 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  150 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence            45778899999999996555666666777788999999999999999999999988887433 22 2221          


Q ss_pred             hhcCChHHHHHHhc-cCChHHHHHHHHHHHHhhcCChh------HHHHHHhcCChHHHHHhhhcCChHHH
Q 008940           77 VECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN------IKKEVLAAGALQPVIGLLSSCCSESQ  139 (548)
Q Consensus        77 ~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~g~i~~L~~ll~~~~~~~~  139 (548)
                      .+..-...++..+. +.+.+.+..++..+..+....++      +|..+...|..+.+-.+-...++++.
T Consensus       151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~  220 (386)
T 2bnx_A          151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK  220 (386)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred             CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence            12234556777776 45667787777777777665553      35566666766665544444445443

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=83.85  E-value=0.98  Score=34.24  Aligned_cols=32  Identities=9%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             CCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940          478 ISLENVSSMYELSEAFHAISLRHTCILYIMEH  509 (548)
Q Consensus       478 l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~  509 (548)
                      ++.+|+..++..|..|+.+.|++.|.+|+.++
T Consensus        77 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~  108 (109)
T 2vkp_A           77 LEADTVLATLYAAKKYIVPALAKACVNFLETS  108 (109)
T ss_dssp             CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            67799999999999999999999999999876

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=83.60  E-value=4.4  Score=44.56  Aligned_cols=104  Identities=12%  Similarity=0.129  Sum_probs=67.5

Q ss_pred             CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCC-----hHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           92 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        92 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      .++...+.++++++.++..-.+-.+.-.-..+++.|+.+.....     ..++...+++++..+..-......+  ..++
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~vl  568 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTVV  568 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHHH
Confidence            35889999999999997543322222222246777777776542     2244445577777654322222222  2467


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                      ..++..+.++++.++..|+.++..+|.....
T Consensus       569 ~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~  599 (1073)
T 3gjx_A          569 NKLFEFMHETHDGVQDMACDTFIKIAQKCRR  599 (1073)
T ss_dssp             HHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888999999999999999976543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=82.57  E-value=9.4  Score=41.96  Aligned_cols=143  Identities=13%  Similarity=0.067  Sum_probs=82.5

Q ss_pred             CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCC-----hHHHHHHHHHHHHhhcCChhHHHHHHhcCCh
Q 008940           50 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  124 (548)
Q Consensus        50 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  124 (548)
                      .++...+.++++++.++..-.+..+.-.=..+++.|+.+...+.     ..++...+++++..+..-....+ + -...+
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~-~-L~~vl  568 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK-F-LKTVV  568 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-H-HHHHH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH-H-HHHHH
Confidence            35889999999999998532222221111236777777776441     23444455777776533111111 1 12356


Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHh--cC-ChHHHHHhhC-------CCCHHHHHHHHHHHHHhhcC
Q 008940          125 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RG-AVRPLIEMLQ-------SPDVQLREMSAFALGRLAQD  194 (548)
Q Consensus       125 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g-~v~~L~~ll~-------~~~~~v~~~a~~~L~~l~~~  194 (548)
                      ..+++.+.+.++.++..|+.++..+|..+   +..++.  .| ..|.+-.+++       .-.++-......+++.+...
T Consensus       569 ~~L~~~m~~~~~~vq~aA~~af~~i~~~C---~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~  645 (1073)
T 3gjx_A          569 NKLFEFMHETHDGVQDMACDTFIKIAQKC---RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA  645 (1073)
T ss_dssp             HHHHHHTTCCSTTHHHHHHHHHHHHHHHT---GGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHH---HHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            67777778888999999999999999543   333332  11 2233333333       22455556666677777755


Q ss_pred             Ccc
Q 008940          195 MHN  197 (548)
Q Consensus       195 ~~~  197 (548)
                      .+.
T Consensus       646 ~p~  648 (1073)
T 3gjx_A          646 QTD  648 (1073)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=82.21  E-value=26  Score=39.34  Aligned_cols=223  Identities=15%  Similarity=0.103  Sum_probs=121.1

Q ss_pred             ChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh--hcCChHHHHHHHHHHHHhhcCC----chhHHHHHhcCCh
Q 008940           93 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATD----SDCKVHIVQRGAV  166 (548)
Q Consensus        93 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~g~v  166 (548)
                      +.+.|..|-..|.++-..          ..+...+...+  .+.+..++..|+..|.+.....    +......++..++
T Consensus        26 ~~~~r~~Ae~~L~~~~~~----------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll   95 (1204)
T 3a6p_A           26 TQRYRLEALKFCEEFKEK----------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM   95 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHH----------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhC----------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            667788888888776332          12344444433  3456788989998888876331    2222333444455


Q ss_pred             HHHHHhhCC---CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH
Q 008940          167 RPLIEMLQS---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI  243 (548)
Q Consensus       167 ~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  243 (548)
                      +.+......   ..+.++...+.++..++...-..   ...+.++.+++++.+ ++..+..++.+|..++.+-..     
T Consensus        96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~-----  166 (1204)
T 3a6p_A           96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT-----  166 (1204)
T ss_dssp             HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc-----
Confidence            554443221   35778888899999988543211   123567778888866 455567788888887642100     


Q ss_pred             HhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-------------------hhhhhhhhHHHHhh
Q 008940          244 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-------------------AEKGVQRRVALALA  304 (548)
Q Consensus       244 ~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-------------------~~~~~~~~a~~aL~  304 (548)
                       .+   .+..     .......    +.+... -..+++.+..++..                   .+..++..++.++.
T Consensus       167 -~~---~~~~-----~r~~~l~----~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~  232 (1204)
T 3a6p_A          167 -FQ---TLPP-----QRRRDIQ----QTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA  232 (1204)
T ss_dssp             -SC---CSCH-----HHHHHHH----HHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             -cc---chHH-----HHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence             00   0000     0000000    000000 01122223333322                   23456777888888


Q ss_pred             hccCCCccceeeecC--CchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          305 HLCSPDDQRTIFIDG--GGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       305 ~l~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ++...-.... +.+.  ..++.++.++.  +++++..|+.+|..+....
T Consensus       233 ~~l~Wi~~~~-i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~  278 (1204)
T 3a6p_A          233 GYIDWVSMSH-ITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK  278 (1204)
T ss_dssp             TTTTTSCHHH-HHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred             HHHhccCHHH-HHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence            7765433211 1222  26677776665  5788999999999998753

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=82.20  E-value=28  Score=33.02  Aligned_cols=127  Identities=13%  Similarity=0.128  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhhcc-CcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh
Q 008940           53 KVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL  131 (548)
Q Consensus        53 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll  131 (548)
                      +.+...+.-+.++..+ ++.    +. .++++.++.+-.+++.++|+..+..|...+....+..     ...++.|..++
T Consensus        40 ~~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL  109 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL  109 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            4677777777776542 232    22 3578899999999999999999999998876444432     23567888888


Q ss_pred             hcCChHHHHHHHHHHHHhhcCCchhHHHHHhcC---------------ChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 008940          132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRG---------------AVRPLIEMLQSPDVQLREMSAFALGRLA  192 (548)
Q Consensus       132 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g---------------~v~~L~~ll~~~~~~v~~~a~~~L~~l~  192 (548)
                      .+.++.+.+.++.+..++-   +..-+.+...+               +-..++.++.+.+..++..+...+-.+.
T Consensus       110 ~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            8888888888887766653   22222222222               2234555567778889988888877755

>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.64  E-value=1.7  Score=32.73  Aligned_cols=67  Identities=10%  Similarity=0.009  Sum_probs=45.0

Q ss_pred             CccccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcC------------CHhhHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 008940          442 GSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEAFHAISLRHTCILYIMEH  509 (548)
Q Consensus       442 ~~~~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l------------~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~  509 (548)
                      +.-.++++|...++.+|+.|++++|.+.|..|+.++.            +.+....++.- +..+-..+.+.+++|+..+
T Consensus         4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~s-dv~~E~~vf~av~~Wv~~d   82 (105)
T 2eqx_A            4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISD-GVPCSQNPTEAIEAWINFN   82 (105)
T ss_dssp             CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHT-CEETTSCHHHHHHHHHHTT
T ss_pred             hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcC-CCCCHHHHHHHHHHHHHcC
Confidence            3446789999999999999999999999999997653            33333333321 1112234666666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	548
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-23
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-22
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-04
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	4e-22
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	6e-22
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-17
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-15
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-12
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-09
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	2e-20
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-20
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-07
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-19
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-17
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-12
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-17
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	8e-07
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-05
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	8e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	8e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.001
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-05
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	1e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	5e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	0.004
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	7e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (250), Expect = 2e-23
 Identities = 41/313 (13%), Positives = 89/313 (28%), Gaps = 31/313 (9%)

Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
           IP  V+ L   D K Q   A  ++   F+++  K Q+ +   +  L+ +LRS +  +   
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
           A G + NLV  S   K E      ++  + LL    +   ++    L    ++  + K  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 160 IVQRG---------------AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 204
           ++                           +  D ++   +   L  L+     +  + + 
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 205 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC 264
            GL+  L        +       ++        N             +    +    +  
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN----------LSYRLDAEVPTRYRQL 233

Query: 265 VAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 324
                    EK      ++        +K +       L    +             +  
Sbjct: 234 EYNARNAYTEKSSTGCFSNKS------DKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT 287

Query: 325 LLGLLGSTNPKQQ 337
            L L+G +     
Sbjct: 288 YLNLMGKSKKDAT 300

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (242), Expect = 2e-22
 Identities = 56/381 (14%), Positives = 112/381 (29%), Gaps = 49/381 (12%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
                 A  I +   ++ S K +V   GGI  LV+LL   +  VQ+AAAGALR L F++ 
Sbjct: 17  KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76

Query: 71  ENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV----------- 118
            NK +    N +   + L+ R+ ++ I  +  G++ NL  +    ++ +           
Sbjct: 77  TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136

Query: 119 ---LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 175
               +                E    A   L   ++ D+  +      G +  L+  +Q+
Sbjct: 137 IIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196

Query: 176 PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-----------------DSKN 218
                R     ++      +HN +            +L                  +  +
Sbjct: 197 CVAASRCDDK-SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSD 255

Query: 219 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKL---------------QDGEFIVQATKD 263
             + +N    L     N            ++                   G         
Sbjct: 256 KMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315

Query: 264 CVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 323
            +  +       +  + L  +  L++     V R  A  L+++          +      
Sbjct: 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR-VMGNQVFP 374

Query: 324 LLLGLLGSTNPKQQLDGAVAL 344
            +  LL S          +  
Sbjct: 375 EVTRLLTSHTGNTSNSEDILS 395

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 1e-12
 Identities = 22/207 (10%), Positives = 54/207 (26%), Gaps = 15/207 (7%)

Query: 1   MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA--- 57
                S   + ++    D        N      +     I   + L+  +          
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305

Query: 58  ---AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 114
                         +  ++   ++   LP +  +L+S +S +      ++ N+       
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL- 364

Query: 115 KKEVLAAGALQPVIGLLSSCCS------ESQREAALLLGQFAATDSDCKVHIVQRGAVRP 168
              V+       V  LL+S         +    A   +    A+             +  
Sbjct: 365 -HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423

Query: 169 LIEMLQSPD-VQLREMSAFALGRLAQD 194
           +I + +S    +  E +   L  +   
Sbjct: 424 IINLCRSSASPKAAEAARLLLSDMWSS 450

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 278 GRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQ 336
           G  +   +  +   ++  Q   A  + H C   +  +      GG+  L+ LL S N   
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 337 QLDGAVALFKLA 348
           Q   A AL  L 
Sbjct: 61  QQAAAGALRNLV 72

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 4e-22
 Identities = 22/100 (22%), Positives = 45/100 (45%)

Query: 372 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEV 431
           ++  +   L+DV  +V   +F AH+  L+A S  F ++F    +   +     P I  E 
Sbjct: 17  NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEG 76

Query: 432 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
           F +++ F+YT  +++       ++  A    +E +   C 
Sbjct: 77  FNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCR 116

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.0 bits (237), Expect = 6e-22
 Identities = 70/365 (19%), Positives = 130/365 (35%), Gaps = 20/365 (5%)

Query: 11  SVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFK 68
               +A  A   L   E       +   G IP  V  L  TD + +Q  +A AL  +A  
Sbjct: 28  ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 87

Query: 69  NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
             E    +V+  A+P  I +L S  + I  +AV  +GN+       +  V+  GA+ P++
Sbjct: 88  TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 147

Query: 129 GLL-----SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 183
            LL     S+      R     L       +           +  L+ +L   D ++   
Sbjct: 148 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 207

Query: 184 SAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG-----------L 232
           S +A+  L    + +  +    G+VP L  L           A    G            
Sbjct: 208 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 267

Query: 233 ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE 292
             +   +A F  +    K    +       +  A    ++++ ++  ++  L+ ++  A+
Sbjct: 268 VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 327

Query: 293 KGVQRRVALALAHLCS--PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 350
              Q+  A A+ +  S    +Q    +  G +E L+ LL + + K       A+  +   
Sbjct: 328 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 387

Query: 351 ATTLS 355
           A  L 
Sbjct: 388 AEKLG 392

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (202), Expect = 2e-17
 Identities = 61/336 (18%), Positives = 137/336 (40%), Gaps = 19/336 (5%)

Query: 36  MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLI-LMLRSED 93
           +   +  +V+ +   + + Q  A  A R L  +  +   + I+    +P  +  + +++ 
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 94  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 153
           S I +E+   + N+   +    K V+  GA+   I LL+S  +    +A   LG  A   
Sbjct: 71  SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130

Query: 154 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMS-----AFALGRLAQDMHNQAGIAHNGGLV 208
           S  +  +++ GA+ PL+ +L  PD+            + L  L ++ +    +     ++
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190

Query: 209 PLL-KLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEF----------I 257
           P L +LL   +  +  ++ +A+  L D  +   + +   GV                   
Sbjct: 191 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250

Query: 258 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC-SPDDQRTIF 316
           ++A  + V  T ++ ++ I    L     L+   +  +Q+     ++++     DQ    
Sbjct: 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 310

Query: 317 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 352
           ++ G +  L+G+L   + K Q + A A+    +  T
Sbjct: 311 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 346

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.6 bits (184), Expect = 3e-15
 Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 9/262 (3%)

Query: 1   MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 60
              + S      +R     ++NL    +       +E  +P LV LL   D +V   +  
Sbjct: 151 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 210

Query: 61  ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 120
           A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  +    ++V+ 
Sbjct: 211 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 270

Query: 121 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 180
           AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+ +L   D + 
Sbjct: 271 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 330

Query: 181 REMSAFALGRLAQ--DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238
           ++ +A+A+        +     + H G + PL+ LL +K+  +      A+  +    + 
Sbjct: 331 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 390

Query: 239 VAD-------FIRVGGVQKLQD 253
           + +           GG+ K++ 
Sbjct: 391 LGETEKLSIMIEECGGLDKIEA 412

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 2e-12
 Identities = 36/185 (19%), Positives = 80/185 (43%), Gaps = 8/185 (4%)

Query: 53  KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 112
            +   A  A+  +    DE   ++++  AL     +L +  + I  EA   + N+     
Sbjct: 245 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 304

Query: 113 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA-TDSDCKVHIVQRGAVRPLIE 171
           +  ++V+  G +  ++G+LS    ++Q+EAA  +  + +    +  V++V  G + PL+ 
Sbjct: 305 DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 364

Query: 172 MLQSPDVQLREMSAFALGRLAQDMHNQAG-------IAHNGGLVPLLKLLDSKNGSLQHN 224
           +L + D ++ ++   A+  + Q              I   GGL  +  L   +N S+   
Sbjct: 365 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKA 424

Query: 225 AAFAL 229
           +   +
Sbjct: 425 SLNLI 429

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 3/137 (2%)

Query: 111 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH-IVQRGAVRPL 169
           +     +     +++ ++  ++S   ESQ +A     +  + +    +  I++ G +   
Sbjct: 2   ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 61

Query: 170 IEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAF 227
           +  L  +    ++  SA+AL  +A     Q     +GG +P    LL S +  +   A +
Sbjct: 62  VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVW 121

Query: 228 ALYGLADNEDNVADFIR 244
           AL  +A +     D + 
Sbjct: 122 ALGNIAGDGSAFRDLVI 138

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (210), Expect = 2e-20
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 372 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEV 431
           +Q     TL DV  +V+ + F+AHR  L  +S  F  +F    +        +  +  + 
Sbjct: 20  NQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQ-----HYTLDFLSPKT 74

Query: 432 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 471
           F+ ++ + YT ++    +   DLL AA+   +E L+  C 
Sbjct: 75  FQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCL 114

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (227), Expect = 2e-20
 Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 3/231 (1%)

Query: 10  NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFK 68
             V+ +AA  +  L+ + +S    +R    +  +V  ++ T D +  R  AG L  L+  
Sbjct: 31  QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-H 89

Query: 69  NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 128
           + E    I +   +P L+ ML S   ++ + A+  + NL+      K  V  AG LQ ++
Sbjct: 90  HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 149

Query: 129 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
            LL+    +        L   A  + + K+ I+  G  + L+ ++++   +    +   +
Sbjct: 150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 209

Query: 189 GRL-AQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 238
            ++ +    N+  I   GG+  L   L   +  L  N  + L  L+D    
Sbjct: 210 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (206), Expect = 7e-18
 Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 3/198 (1%)

Query: 37  EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSA 95
              IP L +LL   D  V   AA  +  L+ K       +     +  ++  ++ + D  
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75

Query: 96  IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 155
                 G + NL H        +  +G +  ++ +L S        A   L         
Sbjct: 76  TARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 156 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPL-LKLL 214
            K+ +   G ++ ++ +L   +V+   ++   L  LA        I    G     + ++
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 215 DSKNGSLQHNAAFALYGL 232
            +            +  +
Sbjct: 195 RTYTYEKLLWTTSRVLKV 212

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 4e-17
 Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 21/233 (9%)

Query: 1   MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 60
           + +     +      A   +T+   E    +  VR+  G+P +V+LL          A  
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377

Query: 61  ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 120
            L         N   + E  A+P L+ +L                               
Sbjct: 378 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ------------ 425

Query: 121 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 180
                     +     E   E         A D   ++ I     +   +++L SP   +
Sbjct: 426 ---------FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 476

Query: 181 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 233
           + ++A  L  LAQD      I   G   PL +LL S+N  +   AA  L+ ++
Sbjct: 477 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (183), Expect = 6e-15
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 1/169 (0%)

Query: 80  NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 139
            A+P L  +L  ED  +  +A  ++  L     +    + +   +  ++  + +      
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 140 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-DMHNQ 198
                      +   +  + I + G +  L++ML SP   +   +   L  L       +
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 247
             +   GGL  ++ LL+  N          L  LA         I   G
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 185

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 8e-15
 Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 119 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-D 177
           LA  A+  +  LL+        +AA+++ Q +  ++     +     V  ++  +Q+  D
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 178 VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 237
           V+    +A  L  L+        I  +GG+  L+K+L S   S+   A   L+ L  +++
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133

Query: 238 NVADFIRVGGV 248
                +R+ G 
Sbjct: 134 GAKMAVRLAGG 144

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 1e-12
 Identities = 53/351 (15%), Positives = 115/351 (32%), Gaps = 15/351 (4%)

Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
             R  A  + NL+H +      +   GGIP LV++L      V   A   L  L    + 
Sbjct: 76  TARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 72  NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
            K  +     L  ++ +L   +          +  L + +   K  +LA+G  Q ++ ++
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 132 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 191
            +   E        + +  +  S  K  IV+ G ++ L   L  P  +L +   + L  L
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 192 AQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD---------- 241
           +     Q G+    G +  L   D  N         +     + ++ +            
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314

Query: 242 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRL----EEKIHGRVLNHLLYLMRVAEKGVQR 297
              +    +    E  + A +   ++  +        ++H  +   +  L   +   + +
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374

Query: 298 RVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
                + +L           + G +  L+ LL   +   Q   ++   +  
Sbjct: 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 1e-12
 Identities = 51/245 (20%), Positives = 89/245 (36%), Gaps = 27/245 (11%)

Query: 36  MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 95
           MEG +  LV+LL   D  V   AAG L  L   N +NK  + +   +  L+  +      
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323

Query: 96  IHYE-----AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 150
                    A+  + +    +   +  V     L  V+ LL         +A + L +  
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

Query: 151 ATDSDCKVHIVQRGAVRPLIEMLQSPDV----------------------QLREMSAFAL 188
           A        + ++GA+  L+++L                           ++ E    AL
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 443

Query: 189 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 248
             LA+D+HN+  I     +   ++LL S   ++Q  AA  L  LA +++        G  
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503

Query: 249 QKLQD 253
             L +
Sbjct: 504 APLTE 508

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 2e-12
 Identities = 61/342 (17%), Positives = 113/342 (33%), Gaps = 20/342 (5%)

Query: 13  IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 72
           +      +  +    SS K  +   GG+  L   L     ++ +     LR L+   D  
Sbjct: 202 LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS---DAA 258

Query: 73  KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
             Q      L TL+ +L S+D  +   A G++ NL  ++   K  V   G ++ ++  + 
Sbjct: 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 133 SC-CSESQREAALLLGQFAATDSDCKVHIV----QRGAVRPLIEMLQSPDV-QLREMSAF 186
                E   E A+   +   +                 +  ++++L  P    L + +  
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378

Query: 187 ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 246
            +  LA    N A +   G +  L++LL   +   Q   +         E    + I  G
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438

Query: 247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 306
               L          +D   + + R         +   + L+    + +QR  A  L  L
Sbjct: 439 CTGALH------ILARDVHNRIVIRGL-----NTIPLFVQLLYSPIENIQRVAAGVLCEL 487

Query: 307 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 348
               +        G    L  LL S N       A  LF+++
Sbjct: 488 AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (144), Expect = 3e-10
 Identities = 14/93 (15%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL--KLLDSKN 218
           +   A+  L ++L   D  +   +A  + +L++   ++  I  +  +V  +   + ++ +
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 219 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 251
                  A  L+ L+ + + +    + GG+  L
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPAL 106

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 4e-07
 Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 34/153 (22%)

Query: 194 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 253
           +  + A +A    +  L KLL+ ++  + + AA  ++ L+  E +    +R   +     
Sbjct: 7   NYQDDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM----- 60

Query: 254 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDDQ 312
                                      ++ ++  M+        R  A  L +L    + 
Sbjct: 61  ---------------------------VSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93

Query: 313 RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 345
                  GG+  L+ +LGS            L 
Sbjct: 94  LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.8 bits (216), Expect = 5e-19
 Identities = 56/327 (17%), Positives = 126/327 (38%), Gaps = 14/327 (4%)

Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ-IVECNALPTLI-LMLRSEDSAIH 97
           +P + + L   D + Q +A    R +  +        +++   +P L+  M  ++   + 
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 98  YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 157
            EA   + N+   +    K V+ A A+   I LL +   E + +A   LG  A   +D +
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 197

Query: 158 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 217
            +++Q  A+ P++ +  S    L   + + L  L +    Q   +     +P L  L   
Sbjct: 198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 257

Query: 218 NGS-LQHNAAFALYGLADNEDNVADFIRVGGVQKLQ----------DGEFIVQATKDCVA 266
             +    +A +A+  L+D        +    + K                 ++A  + V 
Sbjct: 258 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 317

Query: 267 KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELL 325
               + +  I+  VL  L  L+   ++ +++     ++++ + + +Q    ID   +  L
Sbjct: 318 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 377

Query: 326 LGLLGSTNPKQQLDGAVALFKLANKAT 352
           + LL     K + +   A+   ++   
Sbjct: 378 VKLLEVAEYKTKKEACWAISNASSGGL 404

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 5e-17
 Identities = 53/259 (20%), Positives = 110/259 (42%), Gaps = 16/259 (6%)

Query: 11  SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 70
           S+IR A   ++NL            +   +P L +L+   DT+    A  A+  L+    
Sbjct: 219 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 278

Query: 71  ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 130
           E    +++      L+ +L  E + +   A+  +GN+V  +    + V+ AG L  +  L
Sbjct: 279 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 338

Query: 131 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 190
           LSS     ++EA   +    A +++    ++    + PL+++L+  + + ++ + +A+  
Sbjct: 339 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 398

Query: 191 LAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-----------N 235
            +     +  I       G + PL  LL+  +  +      AL  +             N
Sbjct: 399 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 458

Query: 236 EDNVADFI-RVGGVQKLQD 253
            +  ADFI + GG++K+ +
Sbjct: 459 INENADFIEKAGGMEKIFN 477

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 2e-12
 Identities = 50/233 (21%), Positives = 92/233 (39%), Gaps = 15/233 (6%)

Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
            +  A  AI+ L+         V        LVELL    T VQ  A  A+  +   ND 
Sbjct: 262 TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL 321

Query: 72  NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 131
               ++    LP L L+L S    I  EA   I N+   +    + V+ A  + P++ LL
Sbjct: 322 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL 381

Query: 132 SSCCSESQREAALLLGQFAAT---DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 188
                ++++EA   +   ++      D   ++V +G ++PL ++L+  D ++ E++  AL
Sbjct: 382 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 441

Query: 189 GRLAQDMHNQAG------------IAHNGGLVPLLKLLDSKNGSLQHNAAFAL 229
             + +                   I   GG+  +     ++N  +   A   +
Sbjct: 442 ENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 494

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (197), Expect = 1e-17
 Identities = 40/215 (18%), Positives = 76/215 (35%), Gaps = 4/215 (1%)

Query: 15  RAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENK 73
            A + + +L  EN           G+  LV   LE     ++  AA  + T +      +
Sbjct: 36  GALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 94

Query: 74  NQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 132
            Q++   AL  L+ +L       +  +A+  I  LV        + L       ++  + 
Sbjct: 95  EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 154

Query: 133 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 192
               + + ++A LL        + K  +   G V+ L+ ++++      E    AL  L 
Sbjct: 155 QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 214

Query: 193 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 227
            D            L  L +LL  +   LQ +  +
Sbjct: 215 TDFPQGVRECREPELG-LEELLRHRCQLLQQHEEY 248

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 8e-07
 Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 13/205 (6%)

Query: 158 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL-KLLDS 216
           + ++ +       E  Q+ D Q RE +   L  L ++M N A      G+  L+ + L++
Sbjct: 11  LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA 70

Query: 217 KNGSLQHNAAFALYGLADNEDNVAD-FIRVGGVQKL-------QDGEFIVQATKDC---V 265
               L+  AA  +   + N   + +  + +G ++KL             V+A       V
Sbjct: 71  GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 130

Query: 266 AKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLEL 324
            +    L + +     + L+  M+   + ++ + A  L +L     + +      G ++ 
Sbjct: 131 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 190

Query: 325 LLGLLGSTNPKQQLDGAVALFKLAN 349
           L+ L+ + +         AL  L  
Sbjct: 191 LVALVRTEHSPFHEHVLGALCSLVT 215

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 75  QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSS 133
           +++     PT     ++ D      A+ ++ +L  +  N   +      +  ++G  L +
Sbjct: 12  RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEA 70

Query: 134 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 192
             +  +  AA L+G  +   +  +  ++  GA+R L+ +L       +R  + FA+  L 
Sbjct: 71  GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 130

Query: 193 Q 193
           +
Sbjct: 131 R 131

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 31/228 (13%), Positives = 74/228 (32%), Gaps = 25/228 (10%)

Query: 61  ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV-----HSSPNIK 115
            +   A + ++  +Q     AL  L  +  + D+A  +  +  +  LV       +  ++
Sbjct: 17  PMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLR 76

Query: 116 KEVLA------------------AGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDC 156
                                   GAL+ ++ LL     ++ + +A   +          
Sbjct: 77  WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG 136

Query: 157 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL-AQDMHNQAGIAHNGGLVPLLKLLD 215
            +  ++      L+  +Q    +L+  SAF L  L      ++  +   G +  L+ L+ 
Sbjct: 137 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR 196

Query: 216 SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD 263
           +++     +   AL  L  +        R   +   +      Q  + 
Sbjct: 197 TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ 244

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 8e-06
 Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 17/202 (8%)

Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
           +  +++LLE  + +VQ  A   L  L  K  E + +      + TL   + S+   +   
Sbjct: 47  VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE----TIVDTLCTNMLSDKEQLRDI 102

Query: 100 AVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSSCCSES-----QREAALLLGQFAATD 153
           +   +  ++   P       LAA   + + G L+S  ++      Q EA  ++    +  
Sbjct: 103 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 162

Query: 154 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLL-- 211
               +       +  L+  L SP + +R+ +  ALG L        G      L+  L  
Sbjct: 163 GG-LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC----GNIVFVDLIEHLLS 217

Query: 212 KLLDSKNGSLQHNAAFALYGLA 233
           +L  + + S        +  ++
Sbjct: 218 ELSKNDSMSTTRTYIQCIAAIS 239

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 37/205 (18%), Positives = 66/205 (32%), Gaps = 19/205 (9%)

Query: 165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQH 223
            +  L+E + S D   R M+   L    Q    +        +V  +LKLL+ KNG +Q+
Sbjct: 4   HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 63

Query: 224 NAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 282
            A   L  L    ++   + I       +   +   +  +D  +  LK +  ++      
Sbjct: 64  LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDK---EQLRDISSIGLKTVIGELPPASSG 120

Query: 283 HLL--------------YLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 328
             L               + +  +  VQ      +A + S      +      L  LL  
Sbjct: 121 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 180

Query: 329 LGSTNPKQQLDGAVALFKLANKATT 353
           L S     +    +AL  L      
Sbjct: 181 LTSPRLAVRKRTIIALGHLVMSCGN 205

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 9/176 (5%)

Query: 46  LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG 105
                D ++  A   +      +  E+ ++     AL  L+ +L    +           
Sbjct: 282 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 341

Query: 106 NLVHSSPNIKK---EVLAAGALQPVIGLLSSCCSES---QREAALL-LGQFAATDSDCKV 158
           N   ++               +  V+  +           R+AA++  G         ++
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401

Query: 159 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 214
             +   A+  LIE+++ P V +R+ +A+ +GR+ + +   A   ++  L PLL+ L
Sbjct: 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA--INDVYLAPLLQCL 455

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 24/266 (9%)

Query: 37  EGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 93
           E G+  +++LL+ +   DT +QR     L  L              N L  ++  L+SED
Sbjct: 7   EQGLQQILQLLKESQSPDTTIQRTVQQKLEQL-------NQYPDFNNYLIFVLTKLKSED 59

Query: 94  SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 153
                 +  ++ N V +        +        +  +       +    +L+   A+  
Sbjct: 60  EPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG 119

Query: 154 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-----HNQAGIAHNGGLV 208
                       +  L  +L S D    E +  AL ++ +D       +      N  + 
Sbjct: 120 ELQNWP----DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 175

Query: 209 PLLKLLDSKNGSLQHNAA-----FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD 263
             L+     +  ++ +A      F +        ++  F          +   + +    
Sbjct: 176 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCR 235

Query: 264 CVAKTLKRLEEKIHGRVLNHLLYLMR 289
            +   L+   +++   + N + Y+++
Sbjct: 236 ALVMLLEVRMDRLLPHMHNIVEYMLQ 261

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 34/183 (18%), Positives = 55/183 (30%), Gaps = 17/183 (9%)

Query: 23  LAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL---RTLAFKNDENKNQIVEC 79
           LA      +        +  L  L+  +D  V+RA A  L   +  A   DE++   +  
Sbjct: 51  LADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITV 110

Query: 80  N---ALPTLILMLRSEDSAIHYEAVG------VIGNLVHSSPNIKKEVLAAGALQPVIGL 130
                L  L  M    D  +    V       +   +      ++K V      + +  +
Sbjct: 111 ADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLM 170

Query: 131 LSSCCSESQREAALLLGQ----FAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSA 185
                 E +R  A  L          D D  V       A    +  L  PD ++R   A
Sbjct: 171 TQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIA 230

Query: 186 FAL 188
             L
Sbjct: 231 GRL 233

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 10/142 (7%)

Query: 161 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS 220
            ++     L  +L   +   R  SA  L                  +   ++    KN  
Sbjct: 16  CKKLNDDELFRLLDDHNSLKRISSARVLQL----------RGGQDAVRLAIEFCSDKNYI 65

Query: 221 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 280
            +   AF L  +   +    +   +     L D    V+AT         +       ++
Sbjct: 66  RRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKI 125

Query: 281 LNHLLYLMRVAEKGVQRRVALA 302
           +             V+R  A A
Sbjct: 126 VEQSQITAFDKSTNVRRATAFA 147

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 21/148 (14%)

Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
              L  LL+  ++  + ++A  L+    +           +A+   I     ++      
Sbjct: 21  DDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNYIRRDI 69

Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
              ++G +                +      L+   +  +  A     Q    +      
Sbjct: 70  GAFILGQIKICKKCEDNVFNILNNM-----ALNDKSACVRATAIESTAQRCKKNP----- 119

Query: 160 IVQRGAVRPLIEMLQSPDVQLREMSAFA 187
           I     V             +R  +AFA
Sbjct: 120 IYSPKIVEQSQITAFDKSTNVRRATAFA 147

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%)

Query: 40  IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 99
               +  L      ++ AA   L+ L  K  +          +P ++ M    +      
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMT 499

Query: 100 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 159
            +  I  L        +++     L  V+ +     +  +   A  L +      +  + 
Sbjct: 500 TLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ 556

Query: 160 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 192
                 V+P++E L    DV ++  +  AL  L+
Sbjct: 557 ----SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 32/189 (16%), Positives = 67/189 (35%), Gaps = 17/189 (8%)

Query: 12  VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 71
           V+   A+ +          +    +   +PPL  L    +T V+  A  +LR ++ ++  
Sbjct: 64  VLLALAEQLGTFTTLVGGPEYVHCL---LPPLESLATVEETVVRDKAVESLRAISHEHSP 120

Query: 72  NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV--HSSPNIKKEVLAAGALQPVIG 129
           +  +         L+  L   D      +   + ++     S  +K E+      Q    
Sbjct: 121 SDLE----AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL-----RQYFRN 171

Query: 130 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 189
           L S      +R AA  LG+FA      ++  V+   +     +       +R ++  A  
Sbjct: 172 LCSDDTPMVRRAAASKLGEFA---KVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACV 228

Query: 190 RLAQDMHNQ 198
            +AQ +  +
Sbjct: 229 NIAQLLPQE 237

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	548
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.95
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.95
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.95
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.93
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.9
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.9
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.84
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.33
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.26
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.21
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.11
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.1
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.82
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.78
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.74
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.7
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.66
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.59
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.54
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.4
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.38
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.35
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.25
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.24
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.15
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	98.0
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.9
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	97.62
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	97.39
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.16
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.03
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	96.75
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.49
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	95.15
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	94.81
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	94.52
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	93.62
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	93.44
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.51
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	89.73
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.55

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.6e-27  Score=239.69  Aligned_cols=309  Identities=19%  Similarity=0.234  Sum_probs=269.4

Q ss_pred             hHHHHHHHHHHHHHhh-hChhhHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940           10 NSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      ++.+..|+..+.++.. .+......+.+.|+++.|+++++. .++.++..|+++|.+++.+++.....+...|+++.++.
T Consensus        90 ~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~  169 (503)
T d1wa5b_          90 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQ  169 (503)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHH
Confidence            4567788888888762 333334567889999999999985 46889999999999999888888889999999999999


Q ss_pred             HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940           88 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR  167 (548)
Q Consensus        88 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  167 (548)
                      +|.+++.+++..++++|++++.+++..++.+...|+++.++.++.+.++.+++.++|+|.+++.............++++
T Consensus       170 lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~  249 (503)
T d1wa5b_         170 LLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP  249 (503)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH
T ss_pred             HhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999977555555555678999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940          168 PLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG  246 (548)
Q Consensus       168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g  246 (548)
                      .+..++.+++++++..++++|.+++..... ...+.+.|+++.++.++.++++.++..++.+|++++.+.+....     
T Consensus       250 ~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~-----  324 (503)
T d1wa5b_         250 TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ-----  324 (503)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH-----
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHH-----
Confidence            999999999999999999999999976654 46678889999999999999999999999999999876544322     


Q ss_pred             CcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC-ccceeeecCCchHHH
Q 008940          247 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELL  325 (548)
Q Consensus       247 ~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~i~~L  325 (548)
                                                 .+.+.|+++.+..++++.++.++..++|+|.|++.+. .....+.+.|+++.+
T Consensus       325 ---------------------------~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~l  377 (503)
T d1wa5b_         325 ---------------------------VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL  377 (503)
T ss_dssp             ---------------------------HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred             ---------------------------hhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchh
Confidence                                       2345568889999999999999999999999998754 466778899999999


Q ss_pred             HHhhcCCCCccchhhHHHHHHHhhh
Q 008940          326 LGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       326 ~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      ++++.+++.+++..|+++|.+++.+
T Consensus       378 i~~l~~~~~~v~~~a~~~l~nl~~~  402 (503)
T d1wa5b_         378 VKLLEVAEYKTKKEACWAISNASSG  402 (503)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCChhHHHHHHHHHHHHHhc
Confidence            9999999999999999999999875

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7.7e-27  Score=233.34  Aligned_cols=312  Identities=19%  Similarity=0.271  Sum_probs=264.9

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChh-hHHHHHhcCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSS-IKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT   84 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   84 (548)
                      +.+++.+..|+.++.++...+.. ....+.+.|++|.|+++|++ +++++|..|+++|.+++.++++.+..+.+.|+++.
T Consensus        24 s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~  103 (434)
T d1q1sc_          24 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA  103 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhh
Confidence            44678999999999988632222 23567889999999999975 45889999999999999878889999999999999


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc-------------------------------
Q 008940           85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-------------------------------  133 (548)
Q Consensus        85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-------------------------------  133 (548)
                      ++.+|.+++.++++.++++|++++.+++..+..+.+.|+++.++.++..                               
T Consensus       104 l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (434)
T d1q1sc_         104 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL  183 (434)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCH
T ss_pred             hhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchh
Confidence            9999999999999999999999999888888888777777766665532                               


Q ss_pred             ----------------CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc
Q 008940          134 ----------------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       134 ----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                                      .+++++..++++|.+++...+.....+...|+++.++.++.++++.++..++.+|.+++...+.
T Consensus       184 ~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~  263 (434)
T d1q1sc_         184 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE  263 (434)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhH
Confidence                            4567778888999999877777777788899999999999999999999999999999976644


Q ss_pred             -hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhh
Q 008940          198 -QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI  276 (548)
Q Consensus       198 -~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~  276 (548)
                       ...+.+.|+++.+..++.+++++++..++++|.+++.........                                +.
T Consensus       264 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------------------------------i~  311 (434)
T d1q1sc_         264 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--------------------------------VV  311 (434)
T ss_dssp             HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH--------------------------------HH
T ss_pred             HHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHH--------------------------------Hh
Confidence             567788899999999999999999999999999998755432221                                33


Q ss_pred             hhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCC--ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          277 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD--DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       277 ~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +.++++.++.++.+.++.++..|+++|++++...  +....+.+.|+++.|++++.+++++++..++++|.++...
T Consensus       312 ~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~  387 (434)
T d1q1sc_         312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  387 (434)
T ss_dssp             HTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            4557888999999999999999999999998643  3456688899999999999999999999999999998764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.3e-27  Score=240.83  Aligned_cols=340  Identities=19%  Similarity=0.189  Sum_probs=275.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      ..+++++.|+.+|.+++ .+++.+..+.+.|+++.|+++|+++++.++..|+++|.+++.+++..+..+.+.|+++.|+.
T Consensus        72 ~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~  150 (529)
T d1jdha_          72 NDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA  150 (529)
T ss_dssp             CCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh-CCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHH
Confidence            34688999999999999 57888899999999999999999999999999999999999988888889999999999999


Q ss_pred             HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc----------------------------------
Q 008940           88 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----------------------------------  133 (548)
Q Consensus        88 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----------------------------------  133 (548)
                      ++++++.+++..++++|.+++..++..+..+...|+++.++.++..                                  
T Consensus       151 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~  230 (529)
T d1jdha_         151 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ  230 (529)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHH
T ss_pred             HHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhh
Confidence            9999999999999999999987766655555555555555444432                                  


Q ss_pred             -----------------------------------------------CChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940          134 -----------------------------------------------CCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus       134 -----------------------------------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                                                                     ++.+++..++++|++++..++..+..+.+.|++
T Consensus       231 ~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i  310 (529)
T d1jdha_         231 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI  310 (529)
T ss_dssp             HHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHH
T ss_pred             hHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhH
Confidence                                                           234455666777777777777777778888899


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHhhcCCcc----hhhhHhcCChHHHHHhhcCCC-hhHHHHHHHHHHhcccCCcch
Q 008940          167 RPLIEMLQ--SPDVQLREMSAFALGRLAQDMHN----QAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNV  239 (548)
Q Consensus       167 ~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~  239 (548)
                      +.++..+.  ++.+.+++.++++|++++.....    +..+...++++.++.++.+++ ..++..+++++++++.++++.
T Consensus       311 ~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~  390 (529)
T d1jdha_         311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH  390 (529)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH
T ss_pred             HHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhh
Confidence            99888874  45678999999999999976543    445667899999999998754 567788999999999999999


Q ss_pred             HHHHHhcCcccccccchhhhh-----------------------hhHHHHHHH-------HHHHHhhhhhhhHHHHHHHH
Q 008940          240 ADFIRVGGVQKLQDGEFIVQA-----------------------TKDCVAKTL-------KRLEEKIHGRVLNHLLYLMR  289 (548)
Q Consensus       240 ~~~~~~g~i~~L~~~~~~~~~-----------------------~~~~~~~~~-------~~~~~~~~~~~~~~L~~ll~  289 (548)
                      ..+.+.|+++.|++.......                       .......++       .+.....+.++++.|+.+|.
T Consensus       391 ~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~  470 (529)
T d1jdha_         391 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY  470 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred             hhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhC
Confidence            999999999877652211100                       001111111       22233456788999999999


Q ss_pred             hhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940          290 VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA  348 (548)
Q Consensus       290 ~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  348 (548)
                      ++++.++..++++|.+|+.+++.++.+.+.|+++.|+++++++++.++..|+.+|.+|+
T Consensus       471 ~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         471 SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999998888889999999999999999999999999999999874

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-26  Score=236.03  Aligned_cols=309  Identities=18%  Similarity=0.223  Sum_probs=272.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL   87 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~   87 (548)
                      ..++++..|+++|.+++..++.....+.+.|+++.++.+|++++.+++..|+++|++++..+++.+..+.+.|+++.|+.
T Consensus       132 ~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~  211 (503)
T d1wa5b_         132 QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG  211 (503)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchh
Confidence            34678999999999999888888888999999999999999999999999999999999878899999999999999999


Q ss_pred             HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChH
Q 008940           88 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR  167 (548)
Q Consensus        88 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  167 (548)
                      ++.+.+..++..++++|.+++.............++++.++.++.+.+++++..++|+|.+++...+.....+.+.|+++
T Consensus       212 ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  291 (503)
T d1wa5b_         212 LFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK  291 (503)
T ss_dssp             GGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             hcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhh
Confidence            99999999999999999999976555445555678999999999999999999999999999988777778899999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc-hHHHHHh
Q 008940          168 PLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VADFIRV  245 (548)
Q Consensus       168 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~  245 (548)
                      .++.++.++++.++..++.++++++...+. ...+.+.|+++.+..++.++++.++..++++|+|++.+... ...    
T Consensus       292 ~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~----  367 (503)
T d1wa5b_         292 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA----  367 (503)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH----
T ss_pred             hhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHH----
Confidence            999999999999999999999999977655 34566778899999999999999999999999999875432 222    


Q ss_pred             cCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCc----cceeeecCCc
Q 008940          246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD----QRTIFIDGGG  321 (548)
Q Consensus       246 g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~----~~~~~~~~~~  321 (548)
                                                   +.+.++++.++.++.+.+..++..|+|+|.|++.+..    ....+.+.|+
T Consensus       368 -----------------------------i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~  418 (503)
T d1wa5b_         368 -----------------------------VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC  418 (503)
T ss_dssp             -----------------------------HHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC
T ss_pred             -----------------------------HHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCc
Confidence                                         3456688899999999999999999999999975432    3356778999


Q ss_pred             hHHHHHhhcCCCCccchhhHHHHHHHhh
Q 008940          322 LELLLGLLGSTNPKQQLDGAVALFKLAN  349 (548)
Q Consensus       322 i~~L~~ll~~~~~~v~~~a~~~L~~l~~  349 (548)
                      ++.|+.++.+.++++...+..+|.++..
T Consensus       419 l~~l~~~L~~~d~~~~~~~L~~l~~ll~  446 (503)
T d1wa5b_         419 IKPLCDLLEIADNRIIEVTLDALENILK  446 (503)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999988888999888875

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-26  Score=235.41  Aligned_cols=306  Identities=21%  Similarity=0.261  Sum_probs=268.8

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHh-cCCchHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      .++.++..|+.++.+++. ++..+..+.. .|+++.|+++|++ ++++++..|+.+|.+++. +++.+..+.+.|+++.|
T Consensus        29 ~~~~v~~~A~~~l~~l~~-~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L  106 (529)
T d1jdha_          29 EDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPAL  106 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHh-ccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHH
Confidence            446799999999999995 4555554544 4678999999976 568999999999999997 78999999999999999


Q ss_pred             HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                      +.+|++++++++..|+++|++++.+++..+..+.+.|+++.|+.++++++++++..++++|.+++..++..+..+...|+
T Consensus       107 i~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  186 (529)
T d1jdha_         107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG  186 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhccc
Confidence            99999999999999999999999998988999999999999999999999999999999999999888888888999999


Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHH
Q 008940          166 VRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR  244 (548)
Q Consensus       166 v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  244 (548)
                      ++.++.++++ +.+.++..+++++.+++.+.+++..+.+.|+++.|..++.+++.+++..+++++.+++......     
T Consensus       187 ~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~-----  261 (529)
T d1jdha_         187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-----  261 (529)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-----
T ss_pred             chHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch-----
Confidence            9999999975 4567899999999999999999999999999999999999999999999999999997543321     


Q ss_pred             hcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC-CccceeeecCCchH
Q 008940          245 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLE  323 (548)
Q Consensus       245 ~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~i~  323 (548)
                                                    ....++++.|+.++.++++.++..++++|++++.+ ++++..+.+.++++
T Consensus       262 ------------------------------~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~  311 (529)
T d1jdha_         262 ------------------------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE  311 (529)
T ss_dssp             ------------------------------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHH
T ss_pred             ------------------------------hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHH
Confidence                                          11245789999999999999999999999999865 45777888999999


Q ss_pred             HHHHhhc--CCCCccchhhHHHHHHHhhh
Q 008940          324 LLLGLLG--STNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       324 ~L~~ll~--~~~~~v~~~a~~~L~~l~~~  350 (548)
                      .|+.++.  +++++++..++.+|.+++..
T Consensus       312 ~Li~~l~~~~~~~~~~~~a~~aL~~l~~~  340 (529)
T d1jdha_         312 ALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence            9999885  45567888999999999864

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.1e-24  Score=217.63  Aligned_cols=310  Identities=16%  Similarity=0.240  Sum_probs=260.6

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ...++++..|+++|.+++..+++.+..+.+.|+++.++.+|++++.++++.|+++|.+++..++..+..+.+.|+++.++
T Consensus        68 ~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~  147 (434)
T d1q1sc_          68 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL  147 (434)
T ss_dssp             GGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHH
Confidence            34568999999999999988888899999999999999999999999999999999999976666666565555555444


Q ss_pred             H-----------------------------------------------HhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           87 L-----------------------------------------------MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        87 ~-----------------------------------------------ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      .                                               ++.+++++++..++++|++++...++....+.
T Consensus       148 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  227 (434)
T d1q1sc_         148 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV  227 (434)
T ss_dssp             HHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHh
Confidence            3                                               33445677888999999999888777778888


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcc-h
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-Q  198 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~  198 (548)
                      ..|+++.++.++.+++.+++..++.+|.+++..++.....+.+.|+++.+..++++++++++..++++|.+++..... .
T Consensus       228 ~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  307 (434)
T d1q1sc_         228 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI  307 (434)
T ss_dssp             TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhH
Confidence            899999999999999999999999999999988888888899999999999999999999999999999999976654 5


Q ss_pred             hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhh
Q 008940          199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG  278 (548)
Q Consensus       199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (548)
                      ..+.+.|+++.++.++.+++.+++..++++|.+++.......                               +..+.+.
T Consensus       308 ~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~-------------------------------~~~l~~~  356 (434)
T d1q1sc_         308 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ-------------------------------IVYLVHC  356 (434)
T ss_dssp             HHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH-------------------------------HHHHHHT
T ss_pred             HHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHH-------------------------------HHHHHHC
Confidence            667788999999999999999999999999999986443211                               1123455


Q ss_pred             hhhHHHHHHHHhhhhhhhhhHHHHhhhccCC----C---ccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHH
Q 008940          279 RVLNHLLYLMRVAEKGVQRRVALALAHLCSP----D---DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL  347 (548)
Q Consensus       279 ~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~----~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  347 (548)
                      |+++.|+.++++.+++++..++++|.++...    .   ..+..+.+.|+++.|..+..+++++++..|...|-+.
T Consensus       357 ~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         357 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  432 (434)
T ss_dssp             TCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            6788899999999999999999999988531    1   1345677889999999999999999999988877543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.6e-24  Score=210.87  Aligned_cols=311  Identities=21%  Similarity=0.220  Sum_probs=240.9

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ++.+|+++..|+.+|.++|.++++++..+.+.|++|.|+++|+++++++|..|+.+|.+++.++++++..+.+.|+++.+
T Consensus        12 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~l   91 (457)
T d1xm9a1          12 SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREA   91 (457)
T ss_dssp             HSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHH
Confidence            45679999999999999999899999999999999999999999999999999999999998789999999999999999


Q ss_pred             HHHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhh---------------hcCChHHHHHHHHHHHHh
Q 008940           86 ILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL---------------SSCCSESQREAALLLGQF  149 (548)
Q Consensus        86 v~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---------------~~~~~~~~~~a~~~L~~l  149 (548)
                      +.++. ..+.+++..++++|.+++..... +......|+.+.+..++               ...+..++..+++++.++
T Consensus        92 i~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~  170 (457)
T d1xm9a1          92 VSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL  170 (457)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHH
Confidence            99986 46788999999999999876443 34444444333333222               224567888888888888


Q ss_pred             hcCCchhHHHH-HhcCChHHHHHhh-------------------------------------------------------
Q 008940          150 AATDSDCKVHI-VQRGAVRPLIEML-------------------------------------------------------  173 (548)
Q Consensus       150 ~~~~~~~~~~~-~~~g~v~~L~~ll-------------------------------------------------------  173 (548)
                      +... ..+... ...|+++.++.++                                                       
T Consensus       171 ~~~~-~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (457)
T d1xm9a1         171 SSAD-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC  249 (457)
T ss_dssp             TTSH-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------------
T ss_pred             hcCc-hHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhh
Confidence            7543 333322 2234445444433                                                       


Q ss_pred             -------------------------------------------C-CCCHHHHHHHHHHHHHhhcCCcc------hhhhHh
Q 008940          174 -------------------------------------------Q-SPDVQLREMSAFALGRLAQDMHN------QAGIAH  203 (548)
Q Consensus       174 -------------------------------------------~-~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~  203 (548)
                                                                 . ..++.++..+.+++.+++.....      +..+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  329 (457)
T d1xm9a1         250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK  329 (457)
T ss_dssp             ----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTT
T ss_pred             hhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence                                                       1 12345667778888888755432      344557


Q ss_pred             cCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHH
Q 008940          204 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH  283 (548)
Q Consensus       204 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (548)
                      .|+++.|++++.++++.++..++++|++++.+++++..+.+                                  +.++.
T Consensus       330 ~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~----------------------------------~~i~~  375 (457)
T d1xm9a1         330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN----------------------------------QVFPE  375 (457)
T ss_dssp             SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH----------------------------------HTHHH
T ss_pred             cCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH----------------------------------hhHHH
Confidence            78999999999999999999999999999998877665533                                  24566


Q ss_pred             HHHHHHh------hhhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCC-CCccchhhHHHHHHHhhhcc
Q 008940          284 LLYLMRV------AEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       284 L~~ll~~------~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~  352 (548)
                      ++.++..      .+++++..++.+|.+++. ++++++.+.+.|+++.|++++.+. ++.+++.|+.+|.+|+.+..
T Consensus       376 li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            6666653      346789999999999975 466888899999999999999764 56789999999999976544

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.5e-24  Score=171.19  Aligned_cols=106  Identities=22%  Similarity=0.330  Sum_probs=101.1

Q ss_pred             hHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh
Q 008940          371 GDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI  450 (548)
Q Consensus       371 ~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~  450 (548)
                      .+.+++++.+||+++.++|+.|+|||.||+++|+||++||.+++.++.+..+.+++++++.|..+++|+|||++.++.++
T Consensus        16 l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~   95 (122)
T d1r29a_          16 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGN   95 (122)
T ss_dssp             HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred             HHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCchhh
Confidence            46688999999999999999999999999999999999999999998887888899999999999999999999999999


Q ss_pred             HHHHHHHHHHhChHhHHHHHHHHHHh
Q 008940          451 AQDLLRAADQYLLEGLKRLCEYTIAQ  476 (548)
Q Consensus       451 ~~~ll~~a~~~~~~~l~~~c~~~l~~  476 (548)
                      +.+++.+|++|+++.|++.|+++|..
T Consensus        96 v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          96 IMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            99999999999999999999999975

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.2e-24  Score=169.40  Aligned_cols=102  Identities=25%  Similarity=0.413  Sum_probs=95.4

Q ss_pred             chHhhhcCCCCccEEEEeCCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchH
Q 008940          370 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD  449 (548)
Q Consensus       370 ~~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~  449 (548)
                      ..++++.++.+||+++.++|++|+|||.||+++|+||++||.++     ...+.++++++++|+.+++|+|||++.++.+
T Consensus        18 ~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~-----~~~i~~~~v~~~~f~~ll~~~Ytg~i~l~~~   92 (121)
T d1buoa_          18 KANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAE   92 (121)
T ss_dssp             HHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGG
T ss_pred             HHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc-----cceeecCCCCHHHHHHHHHheEccccCCcHH
Confidence            34678899999999999999999999999999999999999754     3479999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhChHhHHHHHHHHHHh
Q 008940          450 IAQDLLRAADQYLLEGLKRLCEYTIAQ  476 (548)
Q Consensus       450 ~~~~ll~~a~~~~~~~l~~~c~~~l~~  476 (548)
                      ++.+++.+|++|++++|++.|+++|..
T Consensus        93 ~v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          93 DLDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             GHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            999999999999999999999999864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.3e-19  Score=166.97  Aligned_cols=190  Identities=18%  Similarity=0.193  Sum_probs=175.9

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHH-hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ...+.+..|+.+|.+++ ++.+++..+...|++++++. +++++++++|..|+.+|++++.+++..+..+.+.|+++.|+
T Consensus        29 ~~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          29 ADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            34577889999999999 67888888999999999886 78899999999999999999998889999999999999999


Q ss_pred             HHhc-cCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           87 LMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        87 ~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                      .++. +.++.++..++++|++++.+++..+..+...|+++.|++++.+.+..++..++++|.+++..++..+..+.+.|+
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence            9996 567899999999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcch
Q 008940          166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ  198 (548)
Q Consensus       166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  198 (548)
                      ++.|+.+++++++.+++.++++|++|+...+..
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~  220 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG  220 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            999999999999999999999999999776543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.1e-20  Score=184.14  Aligned_cols=310  Identities=18%  Similarity=0.178  Sum_probs=217.4

Q ss_pred             CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHH
Q 008940           38 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  117 (548)
Q Consensus        38 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  117 (548)
                      +.||.|+++|++++++++..|+.+|+++|.++++++..+.+.|+++.|+++|++++++++..|+++|++|+.++++.+..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            35799999999999999999999999999888999999999999999999999999999999999999999888999999


Q ss_pred             HHhcCChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhh----------------CCCCHHH
Q 008940          118 VLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML----------------QSPDVQL  180 (548)
Q Consensus       118 ~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll----------------~~~~~~v  180 (548)
                      +.+.|+++.++.++.+ .+++++..++++|.+++... .........|+ +.++..+                ...++.+
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHH-HHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh-hhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            9999999999998865 56789999999999998764 33444444333 3333332                3357789


Q ss_pred             HHHHHHHHHHhhcCCcchhhhHh-cCChHHHHHhhcCC------ChhHHHHHHHHHHhccc-------------------
Q 008940          181 REMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSK------NGSLQHNAAFALYGLAD-------------------  234 (548)
Q Consensus       181 ~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~------~~~v~~~a~~~L~~l~~-------------------  234 (548)
                      +..+++++.+++...+++..... .|+++.++.++.+.      .......+...+.....                   
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999988877665554 45577788877532      11112222222211110                   


Q ss_pred             --------------------------------CCcchHHHHHhcCcccccccchhhh--hhhHHHHHHH-----------
Q 008940          235 --------------------------------NEDNVADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTL-----------  269 (548)
Q Consensus       235 --------------------------------~~~~~~~~~~~g~i~~L~~~~~~~~--~~~~~~~~~~-----------  269 (548)
                                                      .......+...++++.|........  ..........           
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                            0000000001111111110000000  0000001111           


Q ss_pred             --HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCC------CccchhhH
Q 008940          270 --KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN------PKQQLDGA  341 (548)
Q Consensus       270 --~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~v~~~a~  341 (548)
                        .......+.++++.|+.+++++++.++..+++++++++.+++++..+. .++++.++.++....      ++++..++
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~a~  398 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHHHH
Confidence              112233456789999999999999999999999999999888876655 478999999986432      34678899


Q ss_pred             HHHHHHhhh
Q 008940          342 VALFKLANK  350 (548)
Q Consensus       342 ~~L~~l~~~  350 (548)
                      .+|.+++.+
T Consensus       399 ~~L~~l~~~  407 (457)
T d1xm9a1         399 YTVRNLMAS  407 (457)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhcC
Confidence            999999864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2e-19  Score=165.80  Aligned_cols=194  Identities=19%  Similarity=0.273  Sum_probs=175.6

Q ss_pred             HHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHH-HhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcC
Q 008940           44 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG  122 (548)
Q Consensus        44 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  122 (548)
                      ....+..+.+.+..|+.+|.+++. +.+++..+...|+++.++. +++++++++|..|+++|++++.+++..+..+.+.|
T Consensus        23 ~~~~~~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  101 (264)
T d1xqra1          23 GEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG  101 (264)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            334445678899999999999996 7889999999999999886 77889999999999999999999999999999999


Q ss_pred             ChHHHHHhhhc-CChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-Ccchhh
Q 008940          123 ALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD-MHNQAG  200 (548)
Q Consensus       123 ~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~  200 (548)
                      ++|.|+.++.+ .++.++..++++|.+++.+++..+..+...|+++.|+.+++++++.++..++++|++++.. +..+..
T Consensus       102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  181 (264)
T d1xqra1         102 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT  181 (264)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHH
Confidence            99999999964 5688999999999999999999999999999999999999999999999999999999865 456788


Q ss_pred             hHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940          201 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       201 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                      +.+.|+++.|+.++.+++++++..++++|++|+.+.+.
T Consensus       182 ~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~  219 (264)
T d1xqra1         182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ  219 (264)
T ss_dssp             HHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH
Confidence            88999999999999999999999999999999876544

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.5e-12  Score=129.53  Aligned_cols=326  Identities=13%  Similarity=0.090  Sum_probs=218.4

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLI   86 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv   86 (548)
                      .++.++..++.+|..++..-+   ........++.+..+++++++++|..|+..+..++..- ...........+++.+.
T Consensus       254 ~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~  330 (588)
T d1b3ua_         254 KSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK  330 (588)
T ss_dssp             SSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHH
T ss_pred             ccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence            345788888888888874211   11233456788889999999999999999999888632 22333333345788888


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCCh
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  166 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  166 (548)
                      ..+.+.++.+|..++.++..++..   ..........+|.+..++.+++++++..+..++..+......  . -.....+
T Consensus       331 ~~~~d~~~~vr~~~~~~l~~~~~~---~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll  404 (588)
T d1b3ua_         331 ELVSDANQHVKSALASVIMGLSPI---LGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLL  404 (588)
T ss_dssp             HHHTCSCHHHHHHHHTTGGGGHHH---HCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHH
T ss_pred             HhhcCCChHHHHHHHHHHhhhhhc---cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHH
Confidence            888999999999999888887632   111222344789999999999999999988887777532111  1 1223567


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhc
Q 008940          167 RPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG  246 (548)
Q Consensus       167 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g  246 (548)
                      +.+...+.+.++.+|..++.++..++.....  ........+.+..++.++...++..|+.+|+.++..-..  ......
T Consensus       405 ~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~--~~~~~~  480 (588)
T d1b3ua_         405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHAT  480 (588)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHH
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHcCh--HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc--HHHHHH
Confidence            8889999999999999999999998753221  111223355577888888999999999999999753211  111222


Q ss_pred             CcccccccchhhhhhhHH-HHHHHHHH-----HHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCC
Q 008940          247 GVQKLQDGEFIVQATKDC-VAKTLKRL-----EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGG  320 (548)
Q Consensus       247 ~i~~L~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~  320 (548)
                      +++.+...........+. ...++..+     .......+++.++.++.++.+.||..++.+|..+...-+.+  .....
T Consensus       481 i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~--~~~~~  558 (588)
T d1b3ua_         481 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSE  558 (588)
T ss_dssp             THHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH--hHHHH
Confidence            333332211111111110 11112111     11233557888999888889999999999999996543322  12234


Q ss_pred             chHHHHHhhcCCCCccchhhHHHHHHHh
Q 008940          321 GLELLLGLLGSTNPKQQLDGAVALFKLA  348 (548)
Q Consensus       321 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~  348 (548)
                      ..+.|.+++++++.+||..|..++..|+
T Consensus       559 i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         559 VKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            5688888888999999999999998775

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.8e-11  Score=124.23  Aligned_cols=297  Identities=16%  Similarity=0.128  Sum_probs=214.0

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHH
Q 008940            6 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL   85 (548)
Q Consensus         6 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   85 (548)
                      ....|.+|+.++.++..++..-+.   .......++.+..+++++++.+|..|+.++..++...+..   .....+++.+
T Consensus       174 ~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l  247 (588)
T d1b3ua_         174 SDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTL  247 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH---HHHHHHHHHH
Confidence            445688999999999999853221   1223456677888889999999999999999988632221   1122367888


Q ss_pred             HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCc-hhHHHHHhcC
Q 008940           86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRG  164 (548)
Q Consensus        86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g  164 (548)
                      ..+++++++.+|..++.+|++++....   ........++.+..++.+.+++++..++.++..++..-. .......-..
T Consensus       248 ~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~  324 (588)
T d1b3ua_         248 RQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ  324 (588)
T ss_dssp             HHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHT
T ss_pred             HHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence            889999999999999999999874311   223345678999999999999999999999998875432 2233333456


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHH
Q 008940          165 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR  244 (548)
Q Consensus       165 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  244 (548)
                      +++.+...+.+.++.++..++.++..++..-....  .....++.+..++.+.+++++..+...+..+...-...     
T Consensus       325 i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~-----  397 (588)
T d1b3ua_         325 ILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-----  397 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-----
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhH--HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchh-----
Confidence            88889999999999999999988888764322211  22245778888999999999988777666554321110     


Q ss_pred             hcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHH
Q 008940          245 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL  324 (548)
Q Consensus       245 ~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~  324 (548)
                                                    .....+++.+..++.+.++.+|..++.++..++..-..  ........+.
T Consensus       398 ------------------------------~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~  445 (588)
T d1b3ua_         398 ------------------------------QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSL  445 (588)
T ss_dssp             ------------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHH
T ss_pred             ------------------------------hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh--HhHHHHHHHH
Confidence                                          01123567778888888999999999999988642111  1123345778


Q ss_pred             HHHhhcCCCCccchhhHHHHHHHhhh
Q 008940          325 LLGLLGSTNPKQQLDGAVALFKLANK  350 (548)
Q Consensus       325 L~~ll~~~~~~v~~~a~~~L~~l~~~  350 (548)
                      +..++.++...+|..|+.+|..++..
T Consensus       446 l~~~l~D~~~~VR~~A~~~L~~l~~~  471 (588)
T d1b3ua_         446 CMAWLVDHVYAIREAATSNLKKLVEK  471 (588)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccCCchhHHHHHHHHHHHHHHH
Confidence            88899999999999999999999864

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=2.9e-09  Score=97.20  Aligned_cols=254  Identities=17%  Similarity=0.123  Sum_probs=179.2

Q ss_pred             cCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHH
Q 008940           37 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  116 (548)
Q Consensus        37 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  116 (548)
                      ....+.|+++|+++++.+|..|+.+|+.+..           ...++.|+.+++++++.+|..|+.+|+.+....... .
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~-~   85 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-D   85 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-H
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-c
Confidence            3455679999999999999999999988763           135799999999999999999999999996432221 1


Q ss_pred             HHHhcCChHHH-HHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940          117 EVLAAGALQPV-IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       117 ~~~~~g~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  195 (548)
                      .     .++.+ ..++.++++.++..++.+|.+++...+....     ..++.+...+.+.++.++..++.+++...   
T Consensus        86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~---  152 (276)
T d1oyza_          86 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIN---  152 (276)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhcc---
Confidence            1     12233 3456788899999999999999865443222     35678888888999999998888887653   


Q ss_pred             cchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHH-HHHhcCcccccccchhhhhhhHHHHHHHHHHHH
Q 008940          196 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD-FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE  274 (548)
Q Consensus       196 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~  274 (548)
                             ....++.+..++.+.+..++..+..++............ +...     +.      ................
T Consensus       153 -------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~al~~  214 (276)
T d1oyza_         153 -------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEM-----LQ------DKNEEVRIEAIIGLSY  214 (276)
T ss_dssp             ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHH-----TT------CSCHHHHHHHHHHHHH
T ss_pred             -------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhh-----hh------hhhhhhhhhhccccch
Confidence                   234567788888888888888888888777554332211 1111     10      0111112223333444


Q ss_pred             hhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcC-CCCccchhhHHHHH
Q 008940          275 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALF  345 (548)
Q Consensus       275 ~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~  345 (548)
                      ..+..+++.|+..+.  ++.+|..++++|+.+.          +.+.++.|.+++.. ++.+++..|..+|.
T Consensus       215 ~~~~~~~~~L~~~l~--d~~vr~~a~~aL~~ig----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         215 RKDKRVLSVLCDELK--KNTVYDDIIEAAGELG----------DKTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             TTCGGGHHHHHHHHT--SSSCCHHHHHHHHHHC----------CGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHhC--ChHHHHHHHHHHHHcC----------CHHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            556678888888876  4679999999999874          24578999998875 56788888887653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=8.5e-09  Score=110.73  Aligned_cols=305  Identities=13%  Similarity=0.053  Sum_probs=174.9

Q ss_pred             hhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCc-chhhHhhhcCChHHHH
Q 008940            8 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLI   86 (548)
Q Consensus         8 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv   86 (548)
                      .++..|+.|+.+++.++.+..+.-.... ..+++.|+..++++++.+|..++++|+.++.... ...... -...++.++
T Consensus       407 ~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll  484 (888)
T d1qbkb_         407 HEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELL  484 (888)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHH
T ss_pred             chhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHH
Confidence            3457888899999988854433222111 2456788888899999999999999999885221 112222 234788888


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCch--hHHHHHhcC
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD--CKVHIVQRG  164 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g  164 (548)
                      ..+.++++.++..|+++|.+++......-.... ...++.++..+.....+....+..++..++.....  ...... ..
T Consensus       485 ~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~  562 (888)
T d1qbkb_         485 KRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QM  562 (888)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HH
Confidence            889999999999999999999743111000000 12345666666666655555555555554421000  000000 00


Q ss_pred             ChHHHHHhhC------------------------------------------------------------CCCHHHHHHH
Q 008940          165 AVRPLIEMLQ------------------------------------------------------------SPDVQLREMS  184 (548)
Q Consensus       165 ~v~~L~~ll~------------------------------------------------------------~~~~~v~~~a  184 (548)
                      +++.+.....                                                            ..+......+
T Consensus       563 l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  642 (888)
T d1qbkb_         563 LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA  642 (888)
T ss_dssp             HHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            1111111110                                                            0122233333


Q ss_pred             HHHHHHhhcCCcc--hhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhh
Q 008940          185 AFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK  262 (548)
Q Consensus       185 ~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~  262 (548)
                      +.++..+...-..  ...+.....++.+...+.+.++.++..+..+++.++..-...       ..+             
T Consensus       643 l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~-------~~~-------------  702 (888)
T d1qbkb_         643 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH-------VKP-------------  702 (888)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG-------TGG-------------
T ss_pred             HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHH-------HHH-------------
Confidence            3344444321111  111122233455666777778888888888887776432110       000             


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCC--CccceeeecCCchHHHHHhhcCCCCc--cch
Q 008940          263 DCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPK--QQL  338 (548)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~--v~~  338 (548)
                                   .-..+++.++.-+.+..+.++.+|+|+++.++..  .+.+.. + ...++.|++++++++..  ++.
T Consensus       703 -------------~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py-~-~~il~~L~~il~~~~~~~~v~~  767 (888)
T d1qbkb_         703 -------------CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPY-I-PMVLHQLVEIINRPNTPKTLLE  767 (888)
T ss_dssp             -------------GHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGG-S-HHHHHHHHHHHTCTTCCHHHHH
T ss_pred             -------------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhh-H-HHHHHHHHHHHcCCCccHHHHH
Confidence                         0012556666666777889999999999999753  222222 1 35788899999865433  678


Q ss_pred             hhHHHHHHHhhhc
Q 008940          339 DGAVALFKLANKA  351 (548)
Q Consensus       339 ~a~~~L~~l~~~~  351 (548)
                      +++.+++.|+...
T Consensus       768 n~~~~lgrl~~~~  780 (888)
T d1qbkb_         768 NTAITIGRLGYVC  780 (888)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHC
Confidence            8999999998753

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=3.2e-07  Score=83.09  Aligned_cols=243  Identities=12%  Similarity=0.111  Sum_probs=169.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      ..+|.++..|+.+|.....           ...++.|+++++++++.+|..|+.+|+.+... ......     .++.+.
T Consensus        30 d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-~~~~~~-----~~~~l~   92 (276)
T d1oyza_          30 DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDN-----VFNILN   92 (276)
T ss_dssp             CSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHH-----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccccc-----hHHHHH
Confidence            4567899999998887652           13468899999999999999999999998752 222221     123333


Q ss_pred             -HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCC
Q 008940           87 -LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA  165 (548)
Q Consensus        87 -~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  165 (548)
                       .+++++++.++..++.+|+++....+....     ..++.+...+.+.++.++..++.++....           ....
T Consensus        93 ~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-----------~~~~  156 (276)
T d1oyza_          93 NMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIN-----------DKAT  156 (276)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CC
T ss_pred             HHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhcc-----------hHHH
Confidence             356789999999999999999765443322     24667888888888999988888877653           2356


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHh
Q 008940          166 VRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV  245 (548)
Q Consensus       166 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  245 (548)
                      ++.+..++...+..++..+..++........        ...+.+...+.+.+..++..+..++..+.... ....+.+.
T Consensus       157 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~~L~~~  227 (276)
T d1oyza_         157 IPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR-VLSVLCDE  227 (276)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG-GHHHHHHH
T ss_pred             HHHHHHhcccccchhhhhHHHHHHhhhcccc--------ccchhhhhhhhhhhhhhhhhhccccchhhhhh-hHHHHHHH
Confidence            7888889999888999888888887764432        13445677788888889888888888775322 22222211


Q ss_pred             cCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhh
Q 008940          246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALA  304 (548)
Q Consensus       246 g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~  304 (548)
                           +.+        ......+...+..+.+.+.++.|..++.. ++..++..|+.+|.
T Consensus       228 -----l~d--------~~vr~~a~~aL~~ig~~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         228 -----LKK--------NTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             -----HTS--------SSCCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             -----hCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence                 100        01112233444555677899999998887 57889999988874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=9.8e-08  Score=93.39  Aligned_cols=273  Identities=13%  Similarity=0.017  Sum_probs=166.4

Q ss_pred             CchHHHHhhcc--CCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc--CChHHHHHHHHHHHHhhcCChhH
Q 008940           39 GIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNI  114 (548)
Q Consensus        39 ~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~--~~~~v~~~a~~~L~~l~~~~~~~  114 (548)
                      .++.+.+.+.+  .+...+..++.++..++..............+++.++..+.+  .+.+++..++.++..+.......
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  207 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  207 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh
Confidence            45566666654  346677788888888875333322222223356777777764  45789999999999997654432


Q ss_pred             H-HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940          115 K-KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       115 ~-~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  193 (548)
                      . .........+.+..++.+++++++..++.+|..++...+............+.+...+.+.++.++..++..+..++.
T Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         208 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            1 112223356677788888999999999999999986554332212222233445556677888999999988888874


Q ss_pred             CCcchhhhHh---------------------cCChHHHHHhhcC-------CChhHHHHHHHHHHhcccCCcchHHHHHh
Q 008940          194 DMHNQAGIAH---------------------NGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFIRV  245 (548)
Q Consensus       194 ~~~~~~~~~~---------------------~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  245 (548)
                      ..........                     ....+.+...+.+       .+..++..+..++..++            
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~------------  355 (458)
T d1ibrb_         288 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA------------  355 (458)
T ss_dssp             HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHH------------
Confidence            3211100000                     0001111111111       11123333333333333            


Q ss_pred             cCcccccccchhhhhhhHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc-eeeecCC
Q 008940          246 GGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR----VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFIDGG  320 (548)
Q Consensus       246 g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~-~~~~~~~  320 (548)
                                                  ......    +++.+...+.++++.+|..|+.+|+.++.+.... ..-.-..
T Consensus       356 ----------------------------~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~  407 (458)
T d1ibrb_         356 ----------------------------TCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ  407 (458)
T ss_dssp             ----------------------------HHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTT
T ss_pred             ----------------------------HhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHH
Confidence                                        222222    3444555566688999999999999998654321 1112246


Q ss_pred             chHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          321 GLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       321 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      .++.+++.++++++.||..|+++|+++++..
T Consensus       408 i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~  438 (458)
T d1ibrb_         408 AMPTLIELMKDPSVVVRDTAAWTVGRICELL  438 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999998753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1.3e-07  Score=89.16  Aligned_cols=333  Identities=11%  Similarity=0.118  Sum_probs=209.4

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHH---HHHhcCC--chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh-cCCh
Q 008940            9 VNSVIRRAADAITNLAHENSSIKT---RVRMEGG--IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNAL   82 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~---~i~~~g~--i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i   82 (548)
                      .+++.++.+..+..+..+++....   .+.+...  -+++..++..++.-+...+...+..++..........-. ....
T Consensus        88 k~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~  167 (477)
T d1ho8a_          88 NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNN  167 (477)
T ss_dssp             CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCH
T ss_pred             cHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhh
Confidence            457888888888888765543222   2222121  134455566666777888888888887643333322111 1122


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhhhc-----------------CChHHHHHHH
Q 008940           83 PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSS-----------------CCSESQREAA  143 (548)
Q Consensus        83 ~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~-----------------~~~~~~~~a~  143 (548)
                      ..+-.+.+..+.+.+..++.++..+... +..|..+..  ...++.+++.+..                 .+.++...++
T Consensus       168 ~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~l  246 (477)
T d1ho8a_         168 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  246 (477)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHH
Confidence            3333344567888999999999988765 666776643  3456666666643                 1246789999


Q ss_pred             HHHHHhhcCCchhHHHHHhc--CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCcc------hhhhHhcCChHHHHHhh
Q 008940          144 LLLGQFAATDSDCKVHIVQR--GAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHN------QAGIAHNGGLVPLLKLL  214 (548)
Q Consensus       144 ~~L~~l~~~~~~~~~~~~~~--g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~l~~L~~ll  214 (548)
                      .+++-|+. +++....+.+.  +.++.++.+++. ..+.+.+.++.+|.|++.....      ...++..+++ +++..|
T Consensus       247 l~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L  324 (477)
T d1ho8a_         247 LLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSL  324 (477)
T ss_dssp             HHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHH
T ss_pred             HHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHH
Confidence            99999975 46666666554  358888888864 5677888999999999865432      1234444444 445555


Q ss_pred             cCC---ChhHHHHHHH-------HHHhcccCCcchHHHHHhcCcccccccchhhhh-hhHHHHHHHHHHHHhhhhhhhHH
Q 008940          215 DSK---NGSLQHNAAF-------ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA-TKDCVAKTLKRLEEKIHGRVLNH  283 (548)
Q Consensus       215 ~~~---~~~v~~~a~~-------~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  283 (548)
                      ...   |+++....-.       .+..++.-++....+ ..|-+.      .++.. ...-+.++..++ +--+..++..
T Consensus       325 ~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev-~Sg~L~------WSP~H~se~FW~EN~~kf-~e~~~~llk~  396 (477)
T d1ho8a_         325 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAEL-DSKLLC------WSPPHVDNGFWSDNIDEF-KKDNYKIFRQ  396 (477)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH-HHTCCC------CCGGGGCHHHHHHHSGGG-SSGGGHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH-hcCCCC------CCCCcCChhHHHHHHHhh-cccchHHHHH
Confidence            432   5555433221       122233333333333 223221      11111 122333333332 1223458899


Q ss_pred             HHHHHH----------hhhhhhhhhHHHHhhhccC-CCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          284 LLYLMR----------VAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       284 L~~ll~----------~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      |+.+|.          +.|+.+..-||.=++.+++ .|.+|..+-+.|+-..+.+++.++|++||.+|..++..+-.+.|
T Consensus       397 L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~nw  476 (477)
T d1ho8a_         397 LIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTF  476 (477)
T ss_dssp             HHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence            999997          4578888999999999997 47788888888999999999999999999999999999877654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.8e-07  Score=103.59  Aligned_cols=272  Identities=14%  Similarity=0.098  Sum_probs=181.9

Q ss_pred             chHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHH
Q 008940           40 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  119 (548)
Q Consensus        40 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  119 (548)
                      +..|++.++++|+++|..|+.-|.+....+.-....-....+++.++++|.+++++||..|+.+|+.++...++.   ..
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~---~~   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QV   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---HH
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh---hH
Confidence            346778889999999999998888765422211111112247889999999999999999999999998665432   11


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH-----HHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-----VHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~  193 (548)
                       ...++.|+..+.+++...+..+..+|..+...-+...     ....-...++.+...+.. .++.++..++.+|..+..
T Consensus        82 -~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          82 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence             2356778888888888888888888877653221110     111112244445554444 577899999999998875


Q ss_pred             CCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHH
Q 008940          194 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE  273 (548)
Q Consensus       194 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~  273 (548)
                      ..+..-.-.....++.++..+.++++.++..|+.+|+.++..-...                                  
T Consensus       161 ~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----------------------------------  206 (1207)
T d1u6gc_         161 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----------------------------------  206 (1207)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------------------------------------
T ss_pred             HhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----------------------------------
Confidence            4432111111234666778888899999999999999997643210                                  


Q ss_pred             HhhhhhhhHHHHHHHHh-hhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          274 EKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       274 ~~~~~~~~~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                        .-..+++.++..+.. .+...+..++.+++.++.....+..-.-...++.+.+.+.+.++++|..+..++..+....
T Consensus       207 --~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~  283 (1207)
T d1u6gc_         207 --VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  283 (1207)
T ss_dssp             ---CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence              001245556655544 5677788888999888764332211122467899999999999999999999999887754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=7.4e-08  Score=103.26  Aligned_cols=331  Identities=14%  Similarity=0.074  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhcc
Q 008940           12 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS   91 (548)
Q Consensus        12 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~   91 (548)
                      ++..+..+|..++...++   .+. .-.++.+.+.++++++..|+.|+.+++.++.+..+....... .+++.++..+.+
T Consensus       373 ~r~~a~~~L~~l~~~~~~---~il-~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d  447 (888)
T d1qbkb_         373 LRKCSAAALDVLANVYRD---ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSD  447 (888)
T ss_dssp             SHHHHHHHSTTTTTTCCS---SSH-HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhHhhhhHH---HHH-HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccC
Confidence            455566666666532111   011 012344556667888999999999999999764443333222 367888899999


Q ss_pred             CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHH
Q 008940           92 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE  171 (548)
Q Consensus        92 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~  171 (548)
                      +++.+|..++++|+.++.........-.-...++.++..+.++++.++..|+++|.+++......... .-..+++.++.
T Consensus       448 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p-~~~~il~~l~~  526 (888)
T d1qbkb_         448 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVF  526 (888)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGG-GHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHH
Confidence            99999999999999987532111111123467888889899999999999999999997432111000 11235667777


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhcCCcc---hhhhHhcCChHHHHHhhcC--CChhHHHHHHHHHHhccc--CCcchH---H
Q 008940          172 MLQSPDVQLREMSAFALGRLAQDMHN---QAGIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLAD--NEDNVA---D  241 (548)
Q Consensus       172 ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~--~~~~~~---~  241 (548)
                      .+...+...+..+..++..++.....   ...+.. ..++.+......  .+.........++..++.  ......   .
T Consensus       527 ~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~  605 (888)
T d1qbkb_         527 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP  605 (888)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence            78877777777777777777643211   111111 122333333321  112222334444444432  111110   0


Q ss_pred             HHHh--cCccc-c--------cccchh-hhh-hhHHHHHHHHHHHH---------hhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940          242 FIRV--GGVQK-L--------QDGEFI-VQA-TKDCVAKTLKRLEE---------KIHGRVLNHLLYLMRVAEKGVQRRV  299 (548)
Q Consensus       242 ~~~~--g~i~~-L--------~~~~~~-~~~-~~~~~~~~~~~~~~---------~~~~~~~~~L~~ll~~~~~~~~~~a  299 (548)
                      +.+.  +.+.. +        ...... ... ...+....+..+..         +....+++.++..+.+.++.+|..|
T Consensus       606 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a  685 (888)
T d1qbkb_         606 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS  685 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHH
Confidence            0000  00000 0        000000 000 00111111111111         1123466777788888899999999


Q ss_pred             HHHhhhccCC--CccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          300 ALALAHLCSP--DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       300 ~~aL~~l~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ..+++.++..  +..+.. . ...++.|..-+.++...++..|+++++.++...
T Consensus       686 ~~llgdl~~~~~~~~~~~-l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~  737 (888)
T d1qbkb_         686 FALLGDLTKACFQHVKPC-I-ADFMPILGTNLNPEFISVCNNATWAIGEISIQM  737 (888)
T ss_dssp             HHHHHHHHHHCGGGTGGG-H-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhHHHHHH-H-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence            9999988653  222222 1 246677777787777888999999999998753

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.1e-07  Score=88.82  Aligned_cols=264  Identities=12%  Similarity=0.094  Sum_probs=167.4

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccCcchhh-HhhhcCChHHHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLI   86 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv   86 (548)
                      +..+..++.++..++.........-.....++.++..+.++  +..++..++.++..+......... ........+.+.
T Consensus       143 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  222 (458)
T d1ibrb_         143 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC  222 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHH
Confidence            45677788888888753332222122234567777777653  578999999999999864332221 122223566777


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhH---------
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK---------  157 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---------  157 (548)
                      .++.+++++++..++.+|..++...+..-.........+.+.....+.+++++..++..+..++.......         
T Consensus       223 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~  302 (458)
T d1ibrb_         223 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ  302 (458)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence            78888999999999999999986555431111222233445566677888888888888888763211100         


Q ss_pred             -----------HHHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCCh
Q 008940          158 -----------VHIVQRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG  219 (548)
Q Consensus       158 -----------~~~~~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~  219 (548)
                                 ........++.+...+.+       ++..++..+..++..++...+..  +. ...++.+.+.+.++++
T Consensus       303 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~l~~~i~~~l~s~~~  379 (458)
T d1ibrb_         303 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDW  379 (458)
T ss_dssp             SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HH-HHHHHHHHHHTTCSSH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh--hh-hHHHHHHHHHhcCCCH
Confidence                       001111233444444432       23458888899999888554322  11 1245567778888999


Q ss_pred             hHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhH
Q 008940          220 SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRV  299 (548)
Q Consensus       220 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a  299 (548)
                      .++..++.+|+.++......       .+..                         .-..+++.++..++++++.+|..|
T Consensus       380 ~~r~aal~~l~~i~~~~~~~-------~~~~-------------------------~l~~i~~~l~~~l~d~~~~VR~~a  427 (458)
T d1ibrb_         380 RYRDAAVMAFGCILEGPEPS-------QLKP-------------------------LVIQAMPTLIELMKDPSVVVRDTA  427 (458)
T ss_dssp             HHHHHHHHHHHHTSSSSCTT-------TTCT-------------------------TTTTHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHh-------HHHH-------------------------HHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999998543210       0000                         012367888999999999999999


Q ss_pred             HHHhhhccC
Q 008940          300 ALALAHLCS  308 (548)
Q Consensus       300 ~~aL~~l~~  308 (548)
                      +++|+.++.
T Consensus       428 ~~~l~~i~~  436 (458)
T d1ibrb_         428 AWTVGRICE  436 (458)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999975

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.40  E-value=2.4e-08  Score=76.88  Aligned_cols=109  Identities=23%  Similarity=0.224  Sum_probs=88.4

Q ss_pred             hccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHH
Q 008940           47 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP  126 (548)
Q Consensus        47 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  126 (548)
                      |+++++.+|..|+.+|+.+..            ..++.|+..|.++++.+|..|+++|+++..  +         +.++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHH
Confidence            456677788778777766532            357889999999999999999999998742  2         25789


Q ss_pred             HHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 008940          127 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  189 (548)
Q Consensus       127 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~  189 (548)
                      |..++.++++.++..++++|+.+.  ++         +.++.|..+++++++.++..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~--~~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhC--cc---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999999883  12         35688889999999999999988774

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.1e-07  Score=99.29  Aligned_cols=337  Identities=12%  Similarity=0.044  Sum_probs=167.6

Q ss_pred             hhhhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHH
Q 008940            7 RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI   86 (548)
Q Consensus         7 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv   86 (548)
                      +..|++|-.|+.-|.+....+......-....+++.|+++|++++++||..|+.+|+.++...++..   . ..+++.|+
T Consensus        14 ~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~---~-~~l~~~L~   89 (1207)
T d1u6gc_          14 SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---V-ETIVDTLC   89 (1207)
T ss_dssp             CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---H-HHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh---H-HHHHHHHH
Confidence            3457889899887777653211110001112467889999999999999999999999986433221   1 12455566


Q ss_pred             HHhccCChHHHHHHHHHHHHhhcCChh------------------------------HHH--------HHHh--------
Q 008940           87 LMLRSEDSAIHYEAVGVIGNLVHSSPN------------------------------IKK--------EVLA--------  120 (548)
Q Consensus        87 ~ll~~~~~~v~~~a~~~L~~l~~~~~~------------------------------~~~--------~~~~--------  120 (548)
                      ..+.+++...+..+..+|..+...-+.                              .+.        .+..        
T Consensus        90 ~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~  169 (1207)
T d1u6gc_          90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF  169 (1207)
T ss_dssp             HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT
T ss_pred             HHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH
Confidence            666566666666665555544321100                              000        0000        


Q ss_pred             -cCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCcch
Q 008940          121 -AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQ  198 (548)
Q Consensus       121 -~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~  198 (548)
                       ...++.++..+.++++.++..|+.+|+.++...+..   . -...++.++..+. +.+...+..++.+++.++...+.+
T Consensus       170 ~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~  245 (1207)
T d1u6gc_         170 HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR  245 (1207)
T ss_dssp             HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchh
Confidence             012333444444555556666666666665332211   0 1123444444332 233334444555555555433221


Q ss_pred             hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc-hHHHHHhcCcccccc---cchhhhh-hhHHHHHHHHHHH
Q 008940          199 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQD---GEFIVQA-TKDCVAKTLKRLE  273 (548)
Q Consensus       199 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~---~~~~~~~-~~~~~~~~~~~~~  273 (548)
                      ..-.-...++.++..+.+.++++++.++.++..+...... ..... ..+++.+..   ....... .............
T Consensus       246 ~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~  324 (1207)
T d1u6gc_         246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADG  324 (1207)
T ss_dssp             GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-------------------
T ss_pred             hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhc
Confidence            1111123466677888888899999999988888653221 11110 111111110   0000000 0000000000000


Q ss_pred             HhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          274 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       274 ~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      ........+....-.....+.+|..++.+|..++........-.-...++.|+..+.+.++.+|..+..++..+.....
T Consensus       325 ~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~  403 (1207)
T d1u6gc_         325 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR  403 (1207)
T ss_dssp             -----------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred             cchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc
Confidence            0001112222233344567789999999999987653322111224578999999999999999999999988876543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.35  E-value=3.2e-08  Score=76.20  Aligned_cols=108  Identities=18%  Similarity=0.189  Sum_probs=87.0

Q ss_pred             hCCCCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHHHHHhcCccccc
Q 008940          173 LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQ  252 (548)
Q Consensus       173 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~  252 (548)
                      |.++++.+|..|+++|+.+.           ...++.|+..+.++++.++..++++|+++...                 
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-----------------   52 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------------   52 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------------
T ss_pred             CCCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcchh-----------------
Confidence            35667777877777776542           13578899999999999999999999876521                 


Q ss_pred             ccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccceeeecCCchHHHHHhhcCC
Q 008940          253 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST  332 (548)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~i~~L~~ll~~~  332 (548)
                                                +.++.|..+++++++.+|..|+++|+.+..          .+.++.|..++.++
T Consensus        53 --------------------------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~   96 (111)
T d1te4a_          53 --------------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG   96 (111)
T ss_dssp             --------------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC
T ss_pred             --------------------------hhHHHHHhhhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCC
Confidence                                      256788899999999999999999998732          35688999999999


Q ss_pred             CCccchhhHHHH
Q 008940          333 NPKQQLDGAVAL  344 (548)
Q Consensus       333 ~~~v~~~a~~~L  344 (548)
                      ++.+|..|+.+|
T Consensus        97 ~~~vr~~A~~aL  108 (111)
T d1te4a_          97 TGFARKVAVNYL  108 (111)
T ss_dssp             CTHHHHHHHHHG
T ss_pred             CHHHHHHHHHHH
Confidence            999999988776

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=2e-05  Score=74.06  Aligned_cols=261  Identities=14%  Similarity=0.134  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHHhhhChhhHHHHHhc-CCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhh--cCChHHHHHH
Q 008940           12 VIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILM   88 (548)
Q Consensus        12 ~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv~l   88 (548)
                      +...++..+..++............. .....+-.+...++...+.-|++++..+.. .++.|..+..  ...++.+++.
T Consensus       138 ~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~i  216 (477)
T d1ho8a_         138 VLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKI  216 (477)
T ss_dssp             HHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHH
Confidence            45566666677764332222211111 122233334466778888889999999997 6888877754  3456677776


Q ss_pred             hcc-----------------CChHHHHHHHHHHHHhhcCChhHHHHHHhc--CChHHHHHhhhc-CChHHHHHHHHHHHH
Q 008940           89 LRS-----------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLSS-CCSESQREAALLLGQ  148 (548)
Q Consensus        89 l~~-----------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~-~~~~~~~~a~~~L~~  148 (548)
                      |+.                 ....++..++.+++-|+.+ ++....+.+.  +.++.++++++. ..+++.+.++.+|.|
T Consensus       217 l~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~N  295 (477)
T d1ho8a_         217 LQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQ  295 (477)
T ss_dssp             HHHHHC-------------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            652                 1236788999999999764 6666777665  348888988865 458899999999999


Q ss_pred             hhcCCch-----hHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHH-------HHHhh---------------cCCcch-
Q 008940          149 FAATDSD-----CKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFA-------LGRLA---------------QDMHNQ-  198 (548)
Q Consensus       149 l~~~~~~-----~~~~~~~~g~v~~L~~ll~~--~~~~v~~~a~~~-------L~~l~---------------~~~~~~-  198 (548)
                      ++.....     ....++..++++.+-.+...  .|+++.+..-..       +..++               -.+..+ 
T Consensus       296 ll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~s  375 (477)
T d1ho8a_         296 CCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVD  375 (477)
T ss_dssp             TTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGC
T ss_pred             HhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCC
Confidence            9864322     12234555555554443333  466654432211       11111               111111 


Q ss_pred             hhhHh--------c--CChHHHHHhhc----------CCChhHHHHHHHHHHhcccC-CcchHHHHHhcCcccccccchh
Q 008940          199 AGIAH--------N--GGLVPLLKLLD----------SKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFI  257 (548)
Q Consensus       199 ~~~~~--------~--~~l~~L~~ll~----------~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~~~~~  257 (548)
                      ..+..        .  ..+..|+.+|+          +.++.+..-||.=|+.++++ +..+..+.+.|           
T Consensus       376 e~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg-----------  444 (477)
T d1ho8a_         376 NGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG-----------  444 (477)
T ss_dssp             HHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS-----------
T ss_pred             hhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcC-----------
Confidence            12221        1  22556888885          23566778889999999885 44444443333           


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhcc
Q 008940          258 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC  307 (548)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~  307 (548)
                                            +=..++.+|.++|++||.+|+.|+..+.
T Consensus       445 ----------------------~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         445 ----------------------GKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             ----------------------HHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ----------------------cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                                  5567889999999999999999998764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=1.8e-05  Score=83.38  Aligned_cols=306  Identities=11%  Similarity=0.076  Sum_probs=181.4

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccC-cchhhHhhhcCChHHHHHHhccC-ChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           41 PPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      ..+++.+.++++.+|..++.++..++... +.+.    ....++.|+..+.++ +..++..++.+|..++.......+.+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~----wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            45667778889999999999999988631 1111    123566677777654 45678889999999875433211111


Q ss_pred             Hh--cCChHHHHHhhh--cCChHHHHHHHHHHHHhhcCCchhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 008940          119 LA--AGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  193 (548)
Q Consensus       119 ~~--~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  193 (548)
                      ..  ...+..+.+.+.  ..+..++..+..++.++....+.... .......++.+...+++++++++..++.++..++.
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  253 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            10  012233333333  34477889999999988755433211 11223466778888899999999999999999985


Q ss_pred             CCcch-hhhHhcCChHH-HHHhhcCCChhHHHHHHHHHHhcccCCcchHHHH-Hhc----------------Ccccccc-
Q 008940          194 DMHNQ-AGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI-RVG----------------GVQKLQD-  253 (548)
Q Consensus       194 ~~~~~-~~~~~~~~l~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~g----------------~i~~L~~-  253 (548)
                      ..... ..... ..+.. +....++.++.++..++..+..++.......... ...                .++.+.. 
T Consensus       254 ~~~~~~~~~l~-~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~  332 (861)
T d2bpta1         254 KYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL  332 (861)
T ss_dssp             HHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            43321 11111 12333 3445567788898888888877764321111111 100                0111100 


Q ss_pred             ---c----chhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHH----hhhhhhhhhHHHHhhhccCCCccc-eeeecCCc
Q 008940          254 ---G----EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR----VAEKGVQRRVALALAHLCSPDDQR-TIFIDGGG  321 (548)
Q Consensus       254 ---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~----~~~~~~~~~a~~aL~~l~~~~~~~-~~~~~~~~  321 (548)
                         .    .............++..+.......+++.+...+.    +.++..+..++.+++.++...... ....-...
T Consensus       333 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~  412 (861)
T d2bpta1         333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQA  412 (861)
T ss_dssp             TTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred             HHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence               0    00000111222334444444455556666555444    367788899999999988654321 11112346


Q ss_pred             hHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          322 LELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       322 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      ++.+.+.+.++++.+|..+++++..++...
T Consensus       413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  442 (861)
T d2bpta1         413 LPSILNLMNDQSLQVKETTAWCIGRIADSV  442 (861)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHh
Confidence            788999999999999999999999998754

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3.8e-05  Score=81.09  Aligned_cols=307  Identities=11%  Similarity=0.031  Sum_probs=181.3

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccC--ChHHHHHHHHHHHHhhcCChhHHHHH
Q 008940           41 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEV  118 (548)
Q Consensus        41 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~  118 (548)
                      ..+++.+.+++. ++..++.++..++.. +....  ...+.++.|++.+.++  ...++..++.+|..++.........-
T Consensus        93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~-~~p~~--~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~  168 (876)
T d1qgra_          93 NYVLHTLGTETY-RPSSASQCVAGIACA-EIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD  168 (876)
T ss_dssp             HHHHHHTTTCCS-SSCHHHHHHHHHHHH-HGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG
T ss_pred             HHHHHHhcCCcH-HHHHHHHHHHHHHHH-HCCcc--ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            456677776554 455677788887752 11000  1246788888888755  46788889999999875322111111


Q ss_pred             HhcCChHHHHHhhhcC--ChHHHHHHHHHHHHhhcCCchhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 008940          119 LAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM  195 (548)
Q Consensus       119 ~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  195 (548)
                      .....++.++..+.+.  +.+++..+..++.+.......... .....-+++.+...+.+++++++..++.++..+....
T Consensus       169 ~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~  248 (876)
T d1qgra_         169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY  248 (876)
T ss_dssp             GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            1123567777777654  357888888888877643322111 1111235667778888899999999999999998654


Q ss_pred             cch-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcchHH----HHHhc-----------------Ccccccc
Q 008940          196 HNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD----FIRVG-----------------GVQKLQD  253 (548)
Q Consensus       196 ~~~-~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~g-----------------~i~~L~~  253 (548)
                      ... ...........+...+.+.+++++..++..+..++........    ....+                 .++.+..
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  328 (876)
T d1qgra_         249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ  328 (876)
T ss_dssp             GGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHH
Confidence            332 1122222333455666677788888777776666542111000    00000                 0010000


Q ss_pred             ----c----chhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHh----hhhhhhhhHHHHhhhccCCCccc-eeeecCC
Q 008940          254 ----G----EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDDQR-TIFIDGG  320 (548)
Q Consensus       254 ----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~~~~~a~~aL~~l~~~~~~~-~~~~~~~  320 (548)
                          .    .............++..+.......+++.++.++..    .++..|..++.+++.++.+.... ..-....
T Consensus       329 ~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~  408 (876)
T d1qgra_         329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ  408 (876)
T ss_dssp             HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHH
T ss_pred             HHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence                0    000001122233445555555555666666666554    66778888999998887654322 1112235


Q ss_pred             chHHHHHhhcCCCCccchhhHHHHHHHhhhc
Q 008940          321 GLELLLGLLGSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       321 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      .++.+...+.++++.+|..+++++..+++..
T Consensus       409 ~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  439 (876)
T d1qgra_         409 AMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (876)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHHHHc
Confidence            6788899999999999999999999998753

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.9e-05  Score=80.22  Aligned_cols=308  Identities=13%  Similarity=0.088  Sum_probs=186.2

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccC--CHHHHHHHHHHHHHhhccCcchhh-HhhhcCChHHH
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTL   85 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~L   85 (548)
                      .+.++..++.+|..++..-......-.....++.++..+.++  +..++..++.++.+.......... .....-+++.+
T Consensus       143 ~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l  222 (876)
T d1qgra_         143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV  222 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            356778889999999853222111111124567778877654  478999999999887753222111 11111245666


Q ss_pred             HHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH-------
Q 008940           86 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-------  158 (548)
Q Consensus        86 v~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-------  158 (548)
                      ...+.+++++++..++.+|..++...++.-.........+.+...+.+..++++..+...+..++........       
T Consensus       223 ~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  302 (876)
T d1qgra_         223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE  302 (876)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            7777889999999999999999876655433334444555666677777788888888777777632111100       


Q ss_pred             -------------HHHhcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCC
Q 008940          159 -------------HIVQRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN  218 (548)
Q Consensus       159 -------------~~~~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~  218 (548)
                                   .......++.+...+..       ++..++..+..++..++......  +. ...++.+.+.+.+.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~~~~~i~~~l~~~~  379 (876)
T d1qgra_         303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPD  379 (876)
T ss_dssp             HSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG--GH-HHHHHHHHHHTTCSS
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh--hh-hhhHHHHHHhhccch
Confidence                         01111233444444432       23347888888888877443221  11 112344556667788


Q ss_pred             hhHHHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhh
Q 008940          219 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRR  298 (548)
Q Consensus       219 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~  298 (548)
                      ...++.++.+++.+........ +                               .-.-..+++.++..+.++++.+|..
T Consensus       380 ~~~r~~~~~~l~~~~~~~~~~~-~-------------------------------~~~~~~~~~~l~~~l~d~~~~vr~~  427 (876)
T d1qgra_         380 WRYRDAAVMAFGCILEGPEPSQ-L-------------------------------KPLVIQAMPTLIELMKDPSVVVRDT  427 (876)
T ss_dssp             HHHHHHHHHHHHHTSSSSCHHH-H-------------------------------HHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhHHH-H-------------------------------HHHHHHHHHHHHHhhcCCccHHHHH
Confidence            8888888888888765432211 0                               0011236778888888899999999


Q ss_pred             HHHHhhhccCCCcc--ceeeecCCchHHHHHhhcCCCCccchhhHHHHHHHhhhcc
Q 008940          299 VALALAHLCSPDDQ--RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT  352 (548)
Q Consensus       299 a~~aL~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  352 (548)
                      ++++++.++..-..  .....-...++.+...+. +++.++..+++++.++.....
T Consensus       428 a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~  482 (876)
T d1qgra_         428 AAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             HHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHH
Confidence            99999998753211  110001123444444444 467888899999999987543

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=7e-06  Score=59.93  Aligned_cols=74  Identities=22%  Similarity=0.371  Sum_probs=55.7

Q ss_pred             CCeEEEchHHHHhcccHHHHhhhcC--CCCCCCCCceecCCCCHHHHHHHHHHHhc-----C------ccccchHhHHHH
Q 008940          388 EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYT-----G------SVDVTLDIAQDL  454 (548)
Q Consensus       388 ~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-----~------~~~~~~~~~~~l  454 (548)
                      +|..|.+.+.+ |..|+.++.|+..  ++.++....|++++++..+++.+++|++-     +      ..+++.+.+.+|
T Consensus         9 Dg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~~~~l~eL   87 (96)
T d2c9wc1           9 DGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEL   87 (96)
T ss_dssp             TCCEEEEEHHH-HTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCCHHHHHHH
T ss_pred             CCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCCHHHHHHH
Confidence            67899999998 7799999999964  34666777999999999999999999952     1      234778889999


Q ss_pred             HHHHHHhC
Q 008940          455 LRAADQYL  462 (548)
Q Consensus       455 l~~a~~~~  462 (548)
                      +.||++++
T Consensus        88 i~AAnyLd   95 (96)
T d2c9wc1          88 LMAANFLD   95 (96)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHhhhc
Confidence            99999986

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=2.3e-05  Score=57.54  Aligned_cols=79  Identities=22%  Similarity=0.404  Sum_probs=64.0

Q ss_pred             EEEEe-CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhc--------------Cccccc
Q 008940          383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT--------------GSVDVT  447 (548)
Q Consensus       383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt--------------~~~~~~  447 (548)
                      +++.- +|..|.+.+.+ +..|+.++.|+.+.+.++ +..|++++++..+++.+++|++-              ...+++
T Consensus         6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~-~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd   83 (99)
T d1hv2a_           6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRES-KGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP   83 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTC-TTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCC-cCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCCCCCC
Confidence            44444 57899999998 668999999998766554 45799999999999999999962              134467


Q ss_pred             hHhHHHHHHHHHHhCh
Q 008940          448 LDIAQDLLRAADQYLL  463 (548)
Q Consensus       448 ~~~~~~ll~~a~~~~~  463 (548)
                      .+.+.+|+.||+++++
T Consensus        84 ~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          84 TEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhhhCC
Confidence            8889999999999975

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=0.00019  Score=75.33  Aligned_cols=305  Identities=15%  Similarity=0.119  Sum_probs=175.9

Q ss_pred             hHHHHHHHHHHHHHhhhChhhHHHHHh--cCCchHHHHhhc--cCCHHHHHHHHHHHHHhhccCcchhh-HhhhcCChHH
Q 008940           10 NSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKN-QIVECNALPT   84 (548)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~   84 (548)
                      +.++..|+.++..++...+.....+..  ...+..++..+.  ..+..++..++.++.++...-..+.. .......++.
T Consensus       149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  228 (861)
T d2bpta1         149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV  228 (861)
T ss_dssp             HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHh
Confidence            456777888888887532221111110  012233333332  34588999999999988764332221 1112235667


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHH---
Q 008940           85 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV---  161 (548)
Q Consensus        85 Lv~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---  161 (548)
                      +...+.+++++++..+..++..++...+..-......-....+.....+.+++++..+...+..++...........   
T Consensus       229 l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~  308 (861)
T d2bpta1         229 VCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFP  308 (861)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77888899999999999999999765443212222221222334455667788998888888877633111111111   


Q ss_pred             -------------hcCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhcCCChhH
Q 008940          162 -------------QRGAVRPLIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL  221 (548)
Q Consensus       162 -------------~~g~v~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v  221 (548)
                                   -...++.+...+..       ++...+..+..++..++...+..  +. ....+.+...+.+.+...
T Consensus       309 ~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~  385 (861)
T d2bpta1         309 QSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH--IL-EPVLEFVEQNITADNWRN  385 (861)
T ss_dssp             TCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG--GH-HHHHHHHHHHTTCSSHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh--hh-hhhcchhhhhhhhHHHHH
Confidence                         11234555555543       23357777777777776543321  11 011233455666778888


Q ss_pred             HHHHHHHHHhcccCCcchHHHHHhcCcccccccchhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHH
Q 008940          222 QHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVAL  301 (548)
Q Consensus       222 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~  301 (548)
                      +..++.++..++.........                                ..-..+++.++..+.+.++.+|..+++
T Consensus       386 ~~~a~~~l~~i~~~~~~~~~~--------------------------------~~l~~~l~~l~~~l~d~~~~vr~~a~~  433 (861)
T d2bpta1         386 REAAVMAFGSIMDGPDKVQRT--------------------------------YYVHQALPSILNLMNDQSLQVKETTAW  433 (861)
T ss_dssp             HHHHHHHHHHTSSSSCHHHHH--------------------------------HHHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcchhhHH--------------------------------HHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence            889999998887644321100                                011235777888888899999999999


Q ss_pred             HhhhccCCCccceeeecCCchHHHHHhh---cCCCCccchhhHHHHHHHhhhc
Q 008940          302 ALAHLCSPDDQRTIFIDGGGLELLLGLL---GSTNPKQQLDGAVALFKLANKA  351 (548)
Q Consensus       302 aL~~l~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~  351 (548)
                      +++.++..-...  +.....++.++..+   ...++.++..+++++..+....
T Consensus       434 ~l~~l~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~  484 (861)
T d2bpta1         434 CIGRIADSVAES--IDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQL  484 (861)
T ss_dssp             HHHHHHHHHGGG--SCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhchh--hhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHh
Confidence            999987532111  11223333333322   1445677788888888887653

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=1.8e-05  Score=58.72  Aligned_cols=91  Identities=13%  Similarity=0.107  Sum_probs=68.4

Q ss_pred             EEEEeCCeEEEchHHHHhcccH-HHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhcCccccchHh-HHHHHHHHHH
Q 008940          383 VTFLVEGRRFYAHRICLLASSD-AFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQDLLRAADQ  460 (548)
Q Consensus       383 v~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~ll~~a~~  460 (548)
                      |++.|||+.|...+..|..... ++..++...+.....+.+-++ =+|..|+.+|+|+.+|++.++++. ...++.-|++
T Consensus         2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~FiD-Rdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea~f   80 (105)
T d1nn7a_           2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFD-RDPDIFRHILNFYRTGKLHYPRHECISAYDEELAF   80 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEEC-SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEEe-CCHHHHHHHHHHHhcCccccCCCccHHHHHHHHHH
Confidence            6789999999999999976543 445555544444555677775 499999999999999998876543 6788888999


Q ss_pred             hChHhH--HHHHHHHH
Q 008940          461 YLLEGL--KRLCEYTI  474 (548)
Q Consensus       461 ~~~~~l--~~~c~~~l  474 (548)
                      |+++.+  ...|.+.+
T Consensus        81 ygi~~~~l~~cc~~~~   96 (105)
T d1nn7a_          81 FGLIPEIIGDCCYEEY   96 (105)
T ss_dssp             HTCCSCCBCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHH
Confidence            999763  34555544

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=97.39  E-value=2.8e-05  Score=57.37  Aligned_cols=88  Identities=14%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             cEEEEeCCeEEEchHHHHhcccH-HHHhhhcCCCC-CCCCCceecCCCCHHHHHHHHHHHhcCccccchH-hHHHHHHHH
Q 008940          382 DVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGYR-EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRAA  458 (548)
Q Consensus       382 Dv~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~~-e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll~~a  458 (548)
                      -|.+.|||..|...+..|..... +|..++.+.+. ....+.+-+ |=+|+.|+.+|+|+.+|++.++.+ ....++.-|
T Consensus         3 rI~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~~Ea   81 (103)
T d3kvta_           3 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL   81 (103)
T ss_dssp             EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred             EEEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEe-cCCHHHHHHHHHHHccCCcccccccCHHHHHHHH
Confidence            37889999999999999987543 55556554332 233446666 569999999999999999987755 467788899


Q ss_pred             HHhChHh-HHHHH
Q 008940          459 DQYLLEG-LKRLC  470 (548)
Q Consensus       459 ~~~~~~~-l~~~c  470 (548)
                      ++|+|+. +.+.|
T Consensus        82 ~yygi~~~~l~~C   94 (103)
T d3kvta_          82 EFWGLDSNQVEPC   94 (103)
T ss_dssp             HHHTCCGGGBCGG
T ss_pred             HHcCCCHHHHHHH
Confidence            9999964 45555

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.16  E-value=0.00024  Score=61.02  Aligned_cols=116  Identities=18%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             hHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHH-----Hhhc-cCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHH
Q 008940           30 IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR-----TLAF-KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGV  103 (548)
Q Consensus        30 ~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~-----~l~~-~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~  103 (548)
                      .+....+.-.+..|..+++++++.||..++..|.     .+.. .+.+.+......-..+.|..+++++++.++..++..
T Consensus        58 ~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~  137 (233)
T d1lrva_          58 RRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQR  137 (233)
T ss_dssp             HHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhc
Confidence            3433344445677788888888888888876542     2322 122233333333335566777778888888777653


Q ss_pred             -----HHHhhcC-ChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHH
Q 008940          104 -----IGNLVHS-SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL  145 (548)
Q Consensus       104 -----L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~  145 (548)
                           |..+..+ ++..+..+...-..+.+..++++.++.++..++..
T Consensus       138 ~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         138 IPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             SCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             cchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence                 3333322 34455555555566777777777777777776654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.039  Score=48.14  Aligned_cols=203  Identities=15%  Similarity=0.170  Sum_probs=152.7

Q ss_pred             HHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccCcchhh----HhhhcCChHHHHHHhc-cCChHHHHHHHHHHHHh
Q 008940           33 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN----QIVECNALPTLILMLR-SEDSAIHYEAVGVIGNL  107 (548)
Q Consensus        33 ~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~g~i~~Lv~ll~-~~~~~v~~~a~~~L~~l  107 (548)
                      .+...+.+..|+..|..-+.+.|..+..+..++.+.....+.    .+...  .+.+..++. -+++++-..+-..|+..
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            345557888888888888999999999999999875444442    22221  233333443 23566777777777777


Q ss_pred             hcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHHHHHhcC---ChHHHHHhhCCCCHHHHHHH
Q 008940          108 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG---AVRPLIEMLQSPDVQLREMS  184 (548)
Q Consensus       108 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g---~v~~L~~ll~~~~~~v~~~a  184 (548)
                      ... +.....+.....+..+.+.++.++-++...|..++..+...++.........+   .+..+-.+|.+++--++..+
T Consensus       142 ik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS  220 (330)
T d1upka_         142 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  220 (330)
T ss_dssp             HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             Hhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence            665 66678888888899999999999999999999999988876665555554433   55667788999999999999


Q ss_pred             HHHHHHhhcCCcchhhh----HhcCChHHHHHhhcCCChhHHHHHHHHHHhcccCCcc
Q 008940          185 AFALGRLAQDMHNQAGI----AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN  238 (548)
Q Consensus       185 ~~~L~~l~~~~~~~~~~----~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  238 (548)
                      +..|+.+-.+..+...+    .+...+..++.+|++.+..++..|-.+..-+..++.-
T Consensus       221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnK  278 (330)
T d1upka_         221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  278 (330)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCC
Confidence            99999999888775443    3344577899999999999999999998888776643

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.75  E-value=0.00065  Score=49.36  Aligned_cols=82  Identities=13%  Similarity=0.095  Sum_probs=62.4

Q ss_pred             EEEEeCCeEEEchHHHHhcc-cHHHHhhhcCCC-CCCCCCceecCCCCHHHHHHHHHHHhcC-ccccchH-hHHHHHHHH
Q 008940          383 VTFLVEGRRFYAHRICLLAS-SDAFRAMFDGGY-REKDARDIEIPNIRWEVFELMMRFIYTG-SVDVTLD-IAQDLLRAA  458 (548)
Q Consensus       383 v~~~~~~~~~~~h~~il~~~-s~~f~~~~~~~~-~e~~~~~i~l~~~~~~~~~~~l~~~Yt~-~~~~~~~-~~~~ll~~a  458 (548)
                      |.+.|||+.|...+..|... +.+|..|+...+ ....++.+-++ =+|+.|+.+|+|+-+| .+..+.+ ....+.+-|
T Consensus         3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~FiD-Rdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~Ea   81 (100)
T d1t1da_           3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD-RNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI   81 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC-SCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEEe-cCHHHHHHHHHHHhcCCCcCCCCcccHHHHHHHH
Confidence            68899999999999999875 456777775332 23445577775 4999999999999884 5555433 367889999


Q ss_pred             HHhChHh
Q 008940          459 DQYLLEG  465 (548)
Q Consensus       459 ~~~~~~~  465 (548)
                      ++|+|++
T Consensus        82 ~y~gi~~   88 (100)
T d1t1da_          82 KFYELGE   88 (100)
T ss_dssp             HHTTCCH
T ss_pred             HHcCCCH
Confidence            9999976

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0051  Score=53.86  Aligned_cols=203  Identities=12%  Similarity=0.133  Sum_probs=149.6

Q ss_pred             HHHHhcCChHHHHHhhhcCChHHHHHHHHHHHHhhcCCchhHH----HHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 008940          116 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV----HIVQRGAVRPLIEMLQS-PDVQLREMSAFALGR  190 (548)
Q Consensus       116 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~  190 (548)
                      +.+...+.+..|+..|..-+-+.++.++.+..++.+.....+.    -+..  --+.+..+++. +++++...+-..|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            4455677888999999999999999999999999866443332    2222  11333333332 466788888888999


Q ss_pred             hhcCCcchhhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc-cCCcchHHHHHhcCcccccccchhhhhhhHHHHHHH
Q 008940          191 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL  269 (548)
Q Consensus       191 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~i~~L~~~~~~~~~~~~~~~~~~  269 (548)
                      +.....-...+.....+..+.++...++-++...|..++..+- .++.....+....                       
T Consensus       141 cik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~N-----------------------  197 (330)
T d1upka_         141 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH-----------------------  197 (330)
T ss_dssp             HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT-----------------------
T ss_pred             HHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHh-----------------------
Confidence            8888888888888888999999999999999999999998774 4544444443221                       


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhhhhhhhHHHHhhhccCCCccc----eeeecCCchHHHHHhhcCCCCccchhhHHHHH
Q 008940          270 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR----TIFIDGGGLELLLGLLGSTNPKQQLDGAVALF  345 (548)
Q Consensus       270 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  345 (548)
                             -..++...-.+|.+++.-+|..++..|+.+..+..+.    +.+-+..-+..+..+|+++...+|..|.....
T Consensus       198 -------yd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFK  270 (330)
T d1upka_         198 -------YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  270 (330)
T ss_dssp             -------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhh
Confidence                   1225566678899999999999999999998776654    34445566888999999999999999987666


Q ss_pred             HHhhh
Q 008940          346 KLANK  350 (548)
Q Consensus       346 ~l~~~  350 (548)
                      -..-+
T Consensus       271 vFVAN  275 (330)
T d1upka_         271 VFVAN  275 (330)
T ss_dssp             HHHHC
T ss_pred             hhhcC
Confidence            55543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.49  E-value=0.0062  Score=51.93  Aligned_cols=125  Identities=15%  Similarity=0.125  Sum_probs=64.8

Q ss_pred             hhccCCHHHHHHHHHHHHHhhccCcchhhHhhhcCChHHHHHHhccCChHHHHHHHHHH-----HHhhcCC-hhHHHHHH
Q 008940           46 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI-----GNLVHSS-PNIKKEVL  119 (548)
Q Consensus        46 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~v~~~a~~~L-----~~l~~~~-~~~~~~~~  119 (548)
                      .|.++..++|..|++.                  -.+..|..++++++++||..++..|     ..+..+. ...|....
T Consensus        50 ~l~~p~~e~Ra~Aa~~------------------a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa  111 (233)
T d1lrva_          50 YLADPFWERRAIAVRY------------------SPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVA  111 (233)
T ss_dssp             GTTCSSHHHHHHHHTT------------------SCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHhc------------------CCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHH
Confidence            6667778888666531                  1233344444444444444444332     1221111 12233333


Q ss_pred             hcCChHHHHHhhhcCChHHHHHHHHH-----HHHhhcC-CchhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 008940          120 AAGALQPVIGLLSSCCSESQREAALL-----LGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL  188 (548)
Q Consensus       120 ~~g~i~~L~~ll~~~~~~~~~~a~~~-----L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~v~~~a~~~L  188 (548)
                      ..-..+.|..++.+++..++..++..     |..+..+ ++..+..+...-..+.|..+++++++.++..++..|
T Consensus       112 ~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         112 DRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             HHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             hccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence            22234556666666666666665542     2222221 234444444445567788888888999988877653

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.027  Score=37.67  Aligned_cols=58  Identities=19%  Similarity=0.327  Sum_probs=41.2

Q ss_pred             EEEEe-CCeEEEchHHHHhcccHHHHhhhcCCC----CCCCCCceecCCCCHHHHHHHHHHHhc
Q 008940          383 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGY----REKDARDIEIPNIRWEVFELMMRFIYT  441 (548)
Q Consensus       383 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~----~e~~~~~i~l~~~~~~~~~~~l~~~Yt  441 (548)
                      +++.- +|..|.+.+.+ +..|...+.|+....    .+.....|.+++++..+++.+++|++-
T Consensus         3 I~L~SsDg~~F~v~~~~-a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~   65 (72)
T d1nexa2           3 VVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEH   65 (72)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCEEEecHHH-HHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHH
Confidence            44444 57899999985 558999999996432    223345799999999999999999964

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.025  Score=35.27  Aligned_cols=42  Identities=21%  Similarity=0.186  Sum_probs=33.7

Q ss_pred             ccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHH
Q 008940          445 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM  486 (548)
Q Consensus       445 ~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~  486 (548)
                      .+....+.+|+.||++++++.|.++|++.+...+...+.-++
T Consensus         9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~eei   50 (55)
T d1fs1b1           9 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI   50 (55)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHHH
Confidence            456778999999999999999999999998776654444443

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.031  Score=35.86  Aligned_cols=53  Identities=11%  Similarity=0.268  Sum_probs=42.4

Q ss_pred             EEEe-CCeEEEchHHHHhcccHHHHhhhcCCCCCCCCCceecCCCCHHHHHHHHHHHhc
Q 008940          384 TFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT  441 (548)
Q Consensus       384 ~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt  441 (548)
                      ++.. +|..|.+.+. .+..|...+.|+...    ....|++++++..+++.+++|++-
T Consensus         4 ~L~SsDg~~f~v~~~-~a~~S~tI~~ml~~~----~~~~Ipl~~V~s~iL~kVieyc~~   57 (61)
T d1fs1b2           4 KLQSSDGEIFEVDVE-IAKQSVTIKTMLEDL----GMDPVPLPNVNAAILKKVIQWCTH   57 (61)
T ss_dssp             EEECTTSCEEEEEGG-GGGTCHHHHHHHHHT----CCSSEECTTCCHHHHHHHHHHHHH
T ss_pred             EEEecCCCEEEecHH-HHHHhHHHHHHHhcC----CCCCcccCCcCHHHHHHHHHHHHH
Confidence            3443 5788999888 456899999999643    234799999999999999999964

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.62  E-value=0.053  Score=35.71  Aligned_cols=42  Identities=14%  Similarity=0.119  Sum_probs=33.5

Q ss_pred             ccchHhHHHHHHHHHHhChHhHHHHHHHHHHhcCCHhhHHHH
Q 008940          445 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM  486 (548)
Q Consensus       445 ~~~~~~~~~ll~~a~~~~~~~l~~~c~~~l~~~l~~~n~~~~  486 (548)
                      .+....+.+|+.||++++++.|..+|+..+...+...+.-.+
T Consensus        10 ~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eei   51 (70)
T d1nexa1          10 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEI   51 (70)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             hcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHH
Confidence            356788999999999999999999999998765554444444

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=93.44  E-value=1.5  Score=38.91  Aligned_cols=162  Identities=17%  Similarity=0.128  Sum_probs=102.8

Q ss_pred             HHHHhhcc----CCHHHHHHHHHHHHHhhcc----CcchhhHhhhcCChHHHHHHh----ccCChHHHHHHHHHHHHhhc
Q 008940           42 PLVELLEF----TDTKVQRAAAGALRTLAFK----NDENKNQIVECNALPTLILML----RSEDSAIHYEAVGVIGNLVH  109 (548)
Q Consensus        42 ~L~~ll~~----~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~~Lv~ll----~~~~~~v~~~a~~~L~~l~~  109 (548)
                      .+.+++++    .++.++..+.-+++.++..    ++...     ...++.+...+    ..++.+-+..++.+|+|+- 
T Consensus       127 ~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-  200 (336)
T d1lsha1         127 YARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG-  200 (336)
T ss_dssp             HHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC-
Confidence            44555553    4577788888888877741    11111     22344444444    4667777888899999994 


Q ss_pred             CChhHHHHHHhcCChHHHHHhhhcC-------ChHHHHHHHHHHHHhhcCCchhHHHHHhcCChHHHHHhhCC--CCHHH
Q 008940          110 SSPNIKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQL  180 (548)
Q Consensus       110 ~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~--~~~~v  180 (548)
                       .+.         .++.+..++.+.       ...++..|+++|.+++...+..        +.+.+++++.+  .++++
T Consensus       201 -~p~---------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~l~~i~~n~~e~~Ev  262 (336)
T d1lsha1         201 -QPN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSEL  262 (336)
T ss_dssp             -CGG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHH
T ss_pred             -CHh---------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHHHHHHHcCCCCChHH
Confidence             232         467777777542       3568999999999998665432        22445555544  57889


Q ss_pred             HHHHHHHHHHhhcCCcchhhhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhcccCC
Q 008940          181 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNE  236 (548)
Q Consensus       181 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~  236 (548)
                      |..|..+|-..  .+..       ..+..+...+. +++..|.......|.+++...
T Consensus       263 RiaA~~~lm~t--~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~  310 (336)
T d1lsha1         263 RIRSCIVFFES--KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  310 (336)
T ss_dssp             HHHHHHHHHHT--CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhc--CCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC
Confidence            98887777553  2211       12445666564 467788888888999997643

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.51  E-value=4.3  Score=35.91  Aligned_cols=142  Identities=17%  Similarity=0.242  Sum_probs=95.6

Q ss_pred             cCChHHHHHHhc----c-------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhcCChHHHHHHHHHHH
Q 008940           79 CNALPTLILMLR----S-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG  147 (548)
Q Consensus        79 ~g~i~~Lv~ll~----~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  147 (548)
                      .+|+..|+.+|.    .       .+......+++||..+..........+...+++..++..+.++...++..|...|.
T Consensus        44 ~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~  123 (343)
T d2bnxa1          44 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  123 (343)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            446666776663    1       12457788999999998776666666677889999999999999999999999999


Q ss_pred             HhhcCCc--hhHH----------HHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCcc-------hhhhHhcCCh
Q 008940          148 QFAATDS--DCKV----------HIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHN-------QAGIAHNGGL  207 (548)
Q Consensus       148 ~l~~~~~--~~~~----------~~~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~l  207 (548)
                      .+|....  ..-.          ...+.+-...++..++.+ +.+.+..++..+-.+....+.       |..+... |+
T Consensus       124 ~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~-Gl  202 (343)
T d2bnxa1         124 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-GL  202 (343)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT-TH
T ss_pred             HHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHC-Ch
Confidence            9885421  1111          123346678888888764 567777777777777766554       2334444 44


Q ss_pred             HHHHHhhcC-CChhH
Q 008940          208 VPLLKLLDS-KNGSL  221 (548)
Q Consensus       208 ~~L~~ll~~-~~~~v  221 (548)
                      ..++.-++. .++.+
T Consensus       203 ~~il~~l~~~~~~~L  217 (343)
T d2bnxa1         203 HQVLQELREIENEDM  217 (343)
T ss_dssp             HHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHccCChHH
Confidence            455555554 34443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=89.73  E-value=1.5  Score=39.05  Aligned_cols=155  Identities=15%  Similarity=0.175  Sum_probs=97.0

Q ss_pred             hhHHHHHHHHHHHHHhh----hChhhHHHHHhcCCchHHHHhh----ccCCHHHHHHHHHHHHHhhccCcchhhHhhhcC
Q 008940            9 VNSVIRRAADAITNLAH----ENSSIKTRVRMEGGIPPLVELL----EFTDTKVQRAAAGALRTLAFKNDENKNQIVECN   80 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~----~~~~~~~~i~~~g~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   80 (548)
                      .|.++..+.-+++++.+    .++...     ...++.+...+    +..+.+.+..++.+|+|+..  +         +
T Consensus       140 ~~~l~~~a~La~gslv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~  203 (336)
T d1lsha1         140 RPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------N  203 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------G
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------h
Confidence            34555566666666653    222211     12344444443    45677778888999999974  2         3


Q ss_pred             ChHHHHHHhcc-------CChHHHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhhhc--CChHHHHHHHHHHHHhhc
Q 008940           81 ALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAA  151 (548)
Q Consensus        81 ~i~~Lv~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~  151 (548)
                      .++.|.+++.+       .+..+|..|+++|++++...+..        +.+.+..++.+  .++++|..|...|..-  
T Consensus       204 ~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t--  273 (336)
T d1lsha1         204 SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFES--  273 (336)
T ss_dssp             GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHHHHHHHcCCCCChHHHHHHHHHHHhc--
Confidence            56777777753       25689999999999998765532        23355555544  4577887777776553  


Q ss_pred             CCchhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCcc
Q 008940          152 TDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHN  197 (548)
Q Consensus       152 ~~~~~~~~~~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~  197 (548)
                       .|..       ..+..+...+. +++.+|.......|.+++.....
T Consensus       274 -~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P  312 (336)
T d1lsha1         274 -KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  312 (336)
T ss_dssp             -CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             -CCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence             1321       13455666664 46788999999999999865543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.55  E-value=4.2  Score=35.99  Aligned_cols=130  Identities=18%  Similarity=0.212  Sum_probs=91.1

Q ss_pred             hhHHHHHHHHHHHHHhhhChhhHHHHHhcCCchHHHHhhccCCHHHHHHHHHHHHHhhccC--cchhh----------Hh
Q 008940            9 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN--DENKN----------QI   76 (548)
Q Consensus         9 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~----------~~   76 (548)
                      .+..+..++.||..+....+.....+...+++..|+..+.++...++..|+..|..+|...  +....          ..
T Consensus        69 d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~  148 (343)
T d2bnxa1          69 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  148 (343)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            3567888999999999766667777788888999999999999999999999999988521  12121          22


Q ss_pred             hhcCChHHHHHHhccC-ChHHHHHHHHHHHHhhcCChh------HHHHHHhcCChHHHHHhhhcCChHH
Q 008940           77 VECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPN------IKKEVLAAGALQPVIGLLSSCCSES  138 (548)
Q Consensus        77 ~~~g~i~~Lv~ll~~~-~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~g~i~~L~~ll~~~~~~~  138 (548)
                      .+.+-...++..+..+ +.+.+..++..+..+....++      +|..+...|..+.+-++=...++.+
T Consensus       149 ~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L  217 (343)
T d2bnxa1         149 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  217 (343)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             cCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHH
Confidence            2335567778777644 678888888888888766554      3556666776655544433344443