Citrus Sinensis ID: 008944

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55

MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVHALRNNPQNASHSTTNTDEEWEKTAAKDDRKSLKKQISQMKIKDEEFPKNVKLIKKNNKSSKSGLQLLPSRSRRIFDKLWIVGKGHGENRSSETSGSSQSPTSLAPGDTKSSGSSSRHRRHSIS

cccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccEccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHEHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHccHHHHcccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccc

mnivdfpggpkAFEICAKFcygmtvtfSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTksllpwsedlKIIGRSVdsiasktsvdpanvtwsytynrklsapdriveegvfgeriesvpkdwwvedICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCllptdksvgcscSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVkdlliparssqtacyDVELVQCIVNEylmhekpsralgdvgwnekgpddfvlghGSLLAVGKLINGYLaeiahdpnltlaSFIDlsqsipesarpiHDGLYKAIDSYlkehpdltKAERKKICGLMDVRKLTMDASVhaaqndrlplRVVVQVLFFEQVRAASEVHAlrnnpqnashsttntdeeWEKTAAKDDRKSLKKQISQMkikdeefpkNVKLIkknnkssksglqllpsrsrriFDKLWIvgkghgenrssetsgssqsptslapgdtkssgsssrhrrhsis

mnivdfpggpKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTtksllpwseDLKIIGRsvdsiasktsvdpanvtwsytynrklsapdriveegvfgeriesvpkdwwveDICELDIDLYKRVMIAVkskgrmdgsviGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKlheasvkdlliparssqtaCYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVhaaqndrlplRVVVQVLFFEQVRAASEvhalrnnpqnashsttntdeewektaakddrksLKKQisqmkikdeefpknvklikknnkssksglqllpsrsrriFDKLWIVGKghgenrssetsgssqsptslapgdtkssgsssrhrrhsis

MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVgcscsfllkllkvsvlvgvDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVHALRNNPQNASHSTTNTDEEWEKTAAKDDRKSLKKQISQMKIKDEEFPknvklikknnkssksGLQLLPSRSRRIFDKLWIVGKGHGENRssetsgssqsptsLAPGDTKssgsssrhrrhsis

*****FPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAAS***************************************************************************RIFDKLWIVG*****************************************

MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDP***********************************WWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSI********TLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEY*******************************AVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEH******ERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFF********************************************************************************************************************************RH***

MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVHALRN********************************SQMKIKDEEFPKNVKLIKKNNKSSKSGLQLLPSRSRRIFDKLWIVGKG***************************************

MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYT**********************SVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDA**SDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEK*********************HGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVH********************************KK*ISQMKIKDEEFPK***************************************************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVHALRNNPQNASHSTTNTDEEWExxxxxxxxxxxxxxxxxxxxxDEEFPKNVKLIKKNNKSSKSGLQLLPSRSRRIFDKLWIVGKGHGENRSSETSGSSQSPTSLAPGDTKSSGSSSRHRRHSIS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		548	2.2.26 [Sep-21-2011]
Q8H1D3		571	BTB/POZ domain-containing	yes	no	0.854	0.819	0.578	1e-162
O80970		634	BTB/POZ domain-containing	no	no	0.852	0.736	0.483	1e-128
Q0WL52		580	BTB/POZ domain-containing	no	no	0.830	0.784	0.445	1e-112
Q9FN09		579	BTB/POZ domain-containing	no	no	0.888	0.841	0.436	1e-110
Q9C9V6		631	BTB/POZ domain-containing	no	no	0.917	0.797	0.387	1e-106
O64814		481	BTB/POZ domain-containing	no	no	0.687	0.783	0.475	1e-106
Q9LIM6		588	BTB/POZ domain-containing	no	no	0.764	0.712	0.422	2e-93
Q9FIK1		559	BTB/POZ domain-containing	no	no	0.720	0.706	0.386	4e-87
Q5KS50		762	Coleoptile phototropism p	no	no	0.874	0.628	0.343	4e-84
Q9LYW0		592	BTB/POZ domain-containing	no	no	0.762	0.706	0.389	2e-81

>sp\|Q8H1D3\|NPY1_ARATH BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1	Back alignment and function desciption

 Score =  572 bits (1473), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 301/520 (57%), Positives = 382/520 (73%), Gaps = 52/520 (10%)

Query: 1   MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVF 60
           + I+D PGG KAFEICAKFCYGMTVT +AYN+ A RCAAEYLEMTED D+ NLI+K+EVF
Sbjct: 69  ITILDMPGGYKAFEICAKFCYGMTVTLNAYNITAVRCAAEYLEMTEDADRGNLIYKIEVF 128

Query: 61  LNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKL 120
           LNS IFRSWKDSIIVLQTT+SLLPWSEDLK++GR +DS+++K  V+P  +TWSYT+NRKL
Sbjct: 129 LNSGIFRSWKDSIIVLQTTRSLLPWSEDLKLVGRCIDSVSAKILVNPETITWSYTFNRKL 188

Query: 121 SAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRI 180
           S PD+IVE          +PKDWWVED+CEL+ID++KRV+  VKS GRM+  VI EALR 
Sbjct: 189 SGPDKIVEYHREKREENVIPKDWWVEDVCELEIDMFKRVISVVKSSGRMNNGVIAEALRY 248

Query: 181 YAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLP-TDKSVG-CSCSFLLKLLKVSVLVGV 238
           Y  RWLP+S+++L S+A +  NK LVET+V LLP  ++++   SCSFLLKLLKVS+LVG 
Sbjct: 249 YVARWLPESMESLTSEASS--NKDLVETVVFLLPKVNRAMSYSSCSFLLKLLKVSILVGA 306

Query: 239 DNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGD 298
           D + REDLV+ +SLKLHEASVKDLLI         ++VELV  IV++++  EK  R   D
Sbjct: 307 DETVREDLVENVSLKLHEASVKDLLI---------HEVELVHRIVDQFMADEK--RVSED 355

Query: 299 VGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDG 358
             + E     FVLG+G LL+VG+LI+ YL   A +  LTL+SF++LS+ +PESARPIHDG
Sbjct: 356 DRYKE-----FVLGNGILLSVGRLIDAYL---ALNSELTLSSFVELSELVPESARPIHDG 407

Query: 359 LYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQV 418
           LYKAID+++KEHP+LTK+E+K++CGLMDVRKLT +AS HAAQN+RLPLRVVVQVL+FEQ+
Sbjct: 408 LYKAIDTFMKEHPELTKSEKKRLCGLMDVRKLTNEASTHAAQNERLPLRVVVQVLYFEQL 467

Query: 419 RAASEVHALRNNPQNASHSTTNTDEEWEKTAAKDDRKSLKKQISQMKIKDEEFPKNVKLI 478
           RA    H+   +   +SHS     EE                      K EE  K V+L 
Sbjct: 468 RAN---HSPVASVAASSHSPVEKTEE---------------------NKGEEATKKVELS 503

Query: 479 KKN--NKSSKS--GLQLLPSRSRRIFDKLWIVGKGHGENR 514
           KK+  +KS++S  G QL+PSRSRRIF+K+W  GKG   N+
Sbjct: 504 KKSRGSKSTRSGGGAQLMPSRSRRIFEKIW-PGKGEISNK 542

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Coregulates with PID the auxin-mediated plant organogenesis. Regulates cotyledon development through control of PIN1 polarity. May play an essential role in root gravitropic responses.
Arabidopsis thaliana (taxid: 3702)

>sp\|O80970\|NPY2_ARATH BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1	Back alignment and function description

>sp\|Q0WL52\|NPY5_ARATH BTB/POZ domain-containing protein NPY5 OS=Arabidopsis thaliana GN=NPY5 PE=2 SV=2	Back alignment and function description

>sp\|Q9FN09\|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1	Back alignment and function description

>sp\|Q9C9V6\|Y1790_ARATH BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1	Back alignment and function description

>sp\|O64814\|NPY4_ARATH BTB/POZ domain-containing protein NPY4 OS=Arabidopsis thaliana GN=NPY4 PE=2 SV=1	Back alignment and function description

>sp\|Q9LIM6\|Y3649_ARATH BTB/POZ domain-containing protein At3g26490 OS=Arabidopsis thaliana GN=At3g26490 PE=1 SV=1	Back alignment and function description

>sp\|Q9FIK1\|Y5780_ARATH BTB/POZ domain-containing protein At5g47800 OS=Arabidopsis thaliana GN=At5g47800 PE=2 SV=1	Back alignment and function description

>sp\|Q5KS50\|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1	Back alignment and function description

>sp\|Q9LYW0\|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		548
224143314		594	predicted protein [Populus trichocarpa]	0.952	0.878	0.770	0.0
255548736		617	protein binding protein, putative [Ricin	0.968	0.860	0.786	0.0
359475882		620	PREDICTED: BTB/POZ domain-containing pro	0.974	0.861	0.771	0.0
225430484		624	PREDICTED: BTB/POZ domain-containing pro	0.974	0.855	0.771	0.0
147852215		734	hypothetical protein VITISV_036489 [Viti	0.974	0.727	0.767	0.0
296082137		597	unnamed protein product [Vitis vinifera]	0.937	0.860	0.758	0.0
356564003		616	PREDICTED: BTB/POZ domain-containing pro	0.990	0.881	0.735	0.0
449524176		591	PREDICTED: BTB/POZ domain-containing pro	0.990	0.918	0.704	0.0
449441862		612	PREDICTED: BTB/POZ domain-containing pro	0.990	0.887	0.704	0.0
356552414		615	PREDICTED: BTB/POZ domain-containing pro	0.989	0.881	0.735	0.0

>gi\|224143314\|ref\|XP_002324913.1\| predicted protein [Populus trichocarpa] gi\|222866347\|gb\|EEF03478.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/553 (77%), Positives = 476/553 (86%), Gaps = 31/553 (5%)

Query: 1   MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVF 60
           +++VDFPGGPKAFEICAKFCYGM VT +AYNVVAARCAAEYLEMTEDVD+ NLIFK+EVF
Sbjct: 68  IDMVDFPGGPKAFEICAKFCYGMIVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVF 127

Query: 61  LNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKL 120
           LNSSIFRSWKDSIIVLQTTKSLLPWSEDLKI+GR +DSIASKTSVDPA++TWSYTYNRKL
Sbjct: 128 LNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCIDSIASKTSVDPASITWSYTYNRKL 187

Query: 121 SAPDRIVEEGV-FGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALR 179
           S PD IVEEG+ F E+IESVPKDWWVEDICELDIDLYKRVMI VKSKGRMDG VIGEAL+
Sbjct: 188 SVPDNIVEEGINFREKIESVPKDWWVEDICELDIDLYKRVMITVKSKGRMDGKVIGEALK 247

Query: 180 IYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVD 239
            YAVRWLPDS D  VSDA+T R K LVET++CLLP DK VGCSCSFLLKLLK ++LVGV+
Sbjct: 248 TYAVRWLPDSFDDSVSDARTWRYKYLVETLICLLPPDKGVGCSCSFLLKLLKFAILVGVN 307

Query: 240 NSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDV 299
           +S REDLVKRISLKLHEASVKDLL+PAR  Q   YDVEL+QCIVN YLMHEK ++     
Sbjct: 308 DSPREDLVKRISLKLHEASVKDLLVPARPPQNTLYDVELIQCIVNRYLMHEKYNQ----- 362

Query: 300 GWNEKGP--DDFVLGHG--SLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPI 355
             +EK     DF+LGH   +L+ +GKLI+GYLAEIAHDPNLT+ASFIDLS+SIP+SARPI
Sbjct: 363 --DEKNQTNGDFILGHEHVTLMNLGKLIDGYLAEIAHDPNLTIASFIDLSRSIPDSARPI 420

Query: 356 HDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFF 415
            DGLYKAID YLKEH  LTKAE+KKICGLMDV+KLTM+AS+HAAQN+RLPLRVVVQVLFF
Sbjct: 421 QDGLYKAIDIYLKEHLSLTKAEKKKICGLMDVKKLTMEASMHAAQNERLPLRVVVQVLFF 480

Query: 416 EQVRAASEVHALRNNPQNASHSTTNTDEEWEKTAAKDDRKSLKKQISQMKIKDEEFPKNV 475
           EQVRAAS V AL NN ++ S+STTNTDEE                   MKIKDE+F KN 
Sbjct: 481 EQVRAASGVQALNNNARDTSNSTTNTDEE-------------------MKIKDEDFRKNG 521

Query: 476 KLIKKNNKSSKSGLQLLPSRSRRIFDKLWIVGKGHGENRSSETSGSSQSPTSLAPGDTKS 535
           KL+KKN+KS+KSG+QLLPSRSRRIFD+LW+VG+GH ENRSSETSGSSQSPTS+APGDTKS
Sbjct: 522 KLLKKNSKSTKSGVQLLPSRSRRIFDRLWVVGRGHVENRSSETSGSSQSPTSVAPGDTKS 581

Query: 536 SGSSSRHRRHSIS 548
            GSSSR RRHSIS
Sbjct: 582 FGSSSRQRRHSIS 594

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255548736\|ref\|XP_002515424.1\| protein binding protein, putative [Ricinus communis] gi\|223545368\|gb\|EEF46873.1\| protein binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359475882\|ref\|XP_002285522.2\| PREDICTED: BTB/POZ domain-containing protein NPY1-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225430484\|ref\|XP_002285523.1\| PREDICTED: BTB/POZ domain-containing protein NPY1-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147852215\|emb\|CAN82247.1\| hypothetical protein VITISV_036489 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296082137\|emb\|CBI21142.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356564003\|ref\|XP_003550246.1\| PREDICTED: BTB/POZ domain-containing protein NPY1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449524176\|ref\|XP_004169099.1\| PREDICTED: BTB/POZ domain-containing protein NPY1-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449441862\|ref\|XP_004138701.1\| PREDICTED: BTB/POZ domain-containing protein NPY1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356552414\|ref\|XP_003544563.1\| PREDICTED: BTB/POZ domain-containing protein NPY1-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		548
TAIR\|locus:2046961		634	NPY2 "NAKED PINS IN YUC MUTANT	0.916	0.791	0.447	7.8e-110
TAIR\|locus:2158182		579	NPY3 "NAKED PINS IN YUC MUTANT	0.786	0.744	0.457	1.2e-100
TAIR\|locus:2116752		571	ENP "ENHANCER OF PINOID" [Arab	0.565	0.542	0.566	6e-99
TAIR\|locus:2120125		580	NPY5 "NAKED PINS IN YUC MUTANT	0.587	0.555	0.417	2e-96
TAIR\|locus:2200286		631	AT1G67900 [Arabidopsis thalian	0.520	0.451	0.426	5.4e-96
TAIR\|locus:2045314		481	NPY4 "NAKED PINS IN YUC MUTANT	0.454	0.517	0.481	7.9e-93
TAIR\|locus:2079296		588	AT3G26490 [Arabidopsis thalian	0.516	0.481	0.401	2.8e-82
TAIR\|locus:2173418		746	NPH3 "NON-PHOTOTROPIC HYPOCOTY	0.337	0.247	0.422	1.9e-77
TAIR\|locus:2160877		559	AT5G47800 [Arabidopsis thalian	0.764	0.749	0.377	1.1e-76
TAIR\|locus:2143558		592	AT5G03250 [Arabidopsis thalian	0.762	0.706	0.380	7.7e-71

TAIR\|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 239/534 (44%), Positives = 329/534 (61%)

Query:     1 MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVF 60
             ++I   PGGP AFE CAKFCYGMTVT SAYNVVA RCAAEYL M E V+K NLI+K++VF
Sbjct:    69 IDISGIPGGPTAFETCAKFCYGMTVTLSAYNVVATRCAAEYLGMHETVEKGNLIYKIDVF 128

Query:    61 LNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKL 120
             L+SS+FRSWKDSIIVLQTTK  LP SEDLK++   +D+IA+K  VD ++V WSYTYN+K 
Sbjct:   129 LSSSLFRSWKDSIIVLQTTKPFLPLSEDLKLVSLCIDAIATKACVDVSHVEWSYTYNKKK 188

Query:   121 SAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRI 180
              A +     G    +   VP DWWVED+CEL+ID YKRV++ +K+K  + G VIGEAL+ 
Sbjct:   189 LAEEN---NGADSIKARDVPHDWWVEDLCELEIDYYKRVIMNIKTKCILGGEVIGEALKA 245

Query:   181 YAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVXXXXXXXXXXXXXXXXXXXDN 240
             Y  R L      ++     +++K ++ET+V LLP +K+                    + 
Sbjct:   246 YGYRRLSGFNKGVMEQGDLVKHKTIIETLVWLLPAEKNSVSCGFLLKLLKAVTMVNSGE- 304

Query:   241 SAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVG 300
               +E LV+RI  +L EAS+ +LLI +       YDV+LVQ IV E++  +K S    +V 
Sbjct:   305 VVKEQLVRRIGQQLEEASMAELLIKSHQGSETLYDVDLVQKIVMEFMRRDKNSEI--EVQ 362

Query:   301 WNEKGPD-------DFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESAR 353
              +E G +         +L   S L V K+I+ YL EIA DPNL  + FID+++S+    R
Sbjct:   363 DDEDGFEVQEVRKLPGILSEASKLMVAKVIDSYLTEIAKDPNLPASKFIDVAESVTSIPR 422

Query:   354 PIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVL 413
             P HD LY+AID +LKEHP +TK E+K++C LMD RKL+++A +HA QNDRLPLRVVVQVL
Sbjct:   423 PAHDALYRAIDMFLKEHPGITKGEKKRMCKLMDCRKLSVEACMHAVQNDRLPLRVVVQVL 482

Query:   414 FFEQVRAASEVHA------------LRN-NPQNASHST-TNTDEEWEKTAAKDDRKSLKK 459
             FFEQVRAA+   +            LR+     +S S  T  ++EWE  A +++ ++LK 
Sbjct:   483 FFEQVRAAASSGSSTPDLPRGMGRELRSCGTYGSSRSVPTVMEDEWEAVATEEEMRALKS 542

Query:   460 QISQMKIKDEEFPXXXXXXXXXXXXXXXGLQLLPSRSRRIFDK-LWIVGKGHGE 512
             +I+ +K+++E                   L +    S++IF K + +  KG GE
Sbjct:   543 EIAALKLQEESGRKSMDRAGVTAISKIRSLIM----SKKIFGKKVQLQSKGGGE 592

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

GO:0009958 "positive gravitropism" evidence=IGI

GO:0071944 "cell periphery" evidence=IDA

TAIR\|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2116752 ENP "ENHANCER OF PINOID" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2120125 NPY5 "NAKED PINS IN YUC MUTANTS 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2045314 NPY4 "NAKED PINS IN YUC MUTANTS 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2079296 AT3G26490 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2160877 AT5G47800 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1D3	NPY1_ARATH	No assigned EC number	0.5788	0.8540	0.8196	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XVIII0493	hypothetical protein (594 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		548
pfam03000		249	pfam03000, NPH3, NPH3 family	1e-109

>gnl\|CDD\|217312 pfam03000, NPH3, NPH3 family	Back alignment and domain information

 Score =  325 bits (836), Expect = e-109
 Identities = 120/257 (46%), Positives = 174/257 (67%), Gaps = 10/257 (3%)

Query: 141 KDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSD-AQT 199
           +DWW ED+ EL IDL+KRV+ A+KS+G +   VIGEAL  YA +WLP    +  S+    
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRG-VKPEVIGEALMHYAKKWLPGLSRSGSSEEDSE 59

Query: 200 LRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASV 259
              + L+ETIV LLP++K    SCSFL KLL+ ++++G   S RE+L +RI L+L +A++
Sbjct: 60  EEQRALLETIVSLLPSEKGS-VSCSFLFKLLRAAIILGASESCREELERRIGLQLDQATL 118

Query: 260 KDLLIPARSS-QTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLA 318
            DLLIP+  S +   YDV+LVQ I+  +L  +  +++  D         +      SLL 
Sbjct: 119 DDLLIPSGYSGEETLYDVDLVQRILEVFLSRDAATQSSDDED------SEASPSSSSLLK 172

Query: 319 VGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAER 378
           V KL++GYLAEIA DPNL L+ FI L++++P+SARP HDGLY+AID YLK HP+L+++E+
Sbjct: 173 VAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNLSESEK 232

Query: 379 KKICGLMDVRKLTMDAS 395
           K++C LMD +KL+ +A 
Sbjct: 233 KRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		548
PF03000		258	NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr	100.0
PF00651		111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	96.37
smart00225		90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	96.18
PHA03098		534	kelch-like protein; Provisional	95.93
PHA02790		480	Kelch-like protein; Provisional	89.76
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	89.22
PHA02713		557	hypothetical protein; Provisional	88.06
PF11822		317	DUF3342: Domain of unknown function (DUF3342); Int	81.29

>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana	Back alignment and domain information

Probab=100.00  E-value=3e-91  Score=700.06  Aligned_cols=249  Identities=47%  Similarity=0.817  Sum_probs=222.9

Q ss_pred             CCchhhhhcccChhHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHcCCccc--------ccccchhhhhhHHHHHHHHhh
Q 008944          141 KDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSID--------ALVSDAQTLRNKCLVETIVCL  212 (548)
Q Consensus       141 ~dWW~eDL~~L~idl~~rvi~amks~g~~~~~~I~~~L~~Ya~r~Lp~~~~--------~~~~~~~~~~~r~llEtiV~L  212 (548)
                      +|||||||+.|++|+|+|||.+|+++| |++++||++|++||+||||+...        .........+||.+||+||+|
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~-~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~l   79 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKG-MKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSL   79 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHh
Confidence            589999999999999999999999997 99999999999999999999721        112234567899999999999


Q ss_pred             cCCCCCCccchhHHHHHHHHhhhcCCCHHHHHHHHHHHhccccccCccccccccC-CCCCccccHHHHHHHHHHHHcccC
Q 008944          213 LPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPAR-SSQTACYDVELVQCIVNEYLMHEK  291 (548)
Q Consensus       213 LP~ek~s~vsc~FL~~LLR~A~~l~as~~cr~~Le~RIg~qLd~AtldDLLIPs~-~~~~tlYDVd~V~ril~~Fl~~~~  291 (548)
                      ||.++++ +||+|||+|||+|+++++++.||.+||+|||.|||||||+|||||+. +..+|+||||+|+|||++||.+++
T Consensus        80 LP~e~~s-vsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~  158 (258)
T PF03000_consen   80 LPPEKGS-VSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEE  158 (258)
T ss_pred             CCCCCCc-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccc
Confidence            9999988 99999999999999999999999999999999999999999999993 334599999999999999999865


Q ss_pred             CCcccCCCCCCCCCCCCcccCchhHHHHHhhhhhhhhhhcCCCCCChhHHHHHHhhcCCCCcccchhhHHHHHHHHhhCC
Q 008944          292 PSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHP  371 (548)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEIA~D~nL~~sKF~~LAe~lPd~AR~~hDgLYRAIDiYLKaHP  371 (548)
                      ...    ....+........+..++.+||||||+||+|||+||||+|+||++|||+||++||++|||||||||||||+||
T Consensus       159 ~~~----~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp  234 (258)
T PF03000_consen  159 EAG----EEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP  234 (258)
T ss_pred             ccc----cccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence            322    0111111223345678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHhhhhcccccCCCCHHHh
Q 008944          372 DLTKAERKKICGLMDVRKLTMDAS  395 (548)
Q Consensus       372 ~Lse~Er~~lCr~mdc~KLS~EAc  395 (548)
                      +||++||++||++|||||||+|||
T Consensus       235 ~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  235 GLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             cCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins	Back alignment and domain information

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		548
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 61.0 bits (147), Expect = 8e-10
 Identities = 73/524 (13%), Positives = 138/524 (26%), Gaps = 174/524 (33%)

Query: 44  MTEDVDKKNLIFK--LEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIAS 101
           M  +  +    +K  L VF ++  F    D   V    KS+L   E++  I      I S
Sbjct: 7   MDFETGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILS-KEEIDHI------IMS 57

Query: 102 KTSVDPAN-VTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVM 160
           K +V     + W+      LS  + +V++  F E +  +   + +  I            
Sbjct: 58  KDAVSGTLRLFWTL-----LSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 161 IAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRN-------------K-CLV 206
           + ++ + R+      +    Y V         L      LR              K  + 
Sbjct: 111 MYIEQRDRLYNDN--QVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 207 ETIVCLLPTDKSVGCSCSFLLKLLKVS-VLVGVDNSAREDLVKRISLKLHEASVKDLLIP 265
              VCL      V C   F     K+  + +   NS    L   +  KL      +    
Sbjct: 168 LD-VCL---SYKVQCKMDF-----KIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSR 216

Query: 266 ARSSQTACYDVELVQCIVNEYLMHEKPSRAL---GDVGWNEKGPDDFVLGHGSLL----- 317
           +  S      +  +Q  +   L  +     L    +V  N K  + F L    LL     
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFK 275

Query: 318 ----AVGKLINGYLAEIAHDPNLT-------LASFIDLS-QSIPESARPIHDGLYKAIDS 365
                +      +++   H   LT       L  ++D   Q +P      +         
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--------- 326

Query: 366 YLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVH 425
                                                  P    + ++      A S   
Sbjct: 327 ---------------------------------------PR--RLSII------AES--- 336

Query: 426 ALRNNPQNASHSTTNTDEEWEKTAAKDDRKSLKKQISQMKIKDEE--------FPKNVK- 476
            +R+           T + W+          ++  ++ ++  +          FP +   
Sbjct: 337 -IRDGL--------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 477 ----------------------------LIKKNNKSSKSGLQLL 492
                                       L++K  K S   +  +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		548
3i3n_A		279	Kelch-like protein 11; structural genomics, BTB, K	97.99
1buo_A		121	POZ domain, protein (promyelocytic leukemia zinc f	97.48
3b84_A		119	Zinc finger and BTB domain-containing protein 48;	97.38
2vkp_A		109	BTB/POZ domain-containing protein 6; protein-bindi	97.37
2yy9_A		135	Zinc finger and BTB domain-containing protein 48;	97.33
3m5b_A		119	Zinc finger and BTB domain-containing protein 32;	97.28
2vpk_A		116	Myoneurin; transcription regulation, transcription	97.21
2q81_A		119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	97.2
2if5_A		120	Zinc finger and BTB domain-containing protein 7A;	97.17
2ppi_A		144	Gigaxonin; BTB domain, protein degradation, struct	97.09
3ga1_A		129	Nucleus accumbens-associated protein 1; BTB/POZ do	97.08
2z8h_A		138	Transcription regulator protein BACH1; BTB, POZ, d	97.08
3htm_A		172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	97.04
3hve_A		256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	96.99
4eoz_A		145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	96.98
1r29_A		127	B-cell lymphoma 6 protein; BTB domain, transcripti	96.98
3ohu_A		125	Transcription regulator protein BACH2; BTB/POZ dom	96.42
3fkc_A		116	Transcriptional regulator kaiso; zinc finger and B	96.41
3hqi_A		312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	96.21
2ihc_A		124	Transcription regulator protein BACH1; BRIC-A-BRAC	96.02
4ajy_C		97	Transcription elongation factor B polypeptide 1; E	85.4

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A	Back alignment and structure

Probab=97.99  E-value=1.1e-05  Score=79.62  Aligned_cols=171  Identities=15%  Similarity=0.156  Sum_probs=114.5

Q ss_pred             CChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhcccCChHHHHHHHhhccccccchh
Q 008944            8 GGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSE   87 (548)
Q Consensus         8 GG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~vl~sW~dsi~vLqsce~llp~aE   87 (548)
                      -.+++|+...+|+|+.++++++.||..+-.||.+|+|.+      |....+.||.+.+-.  .       .|-.++-+|+
T Consensus        88 v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l~~--~-------n~~~i~~~A~  152 (279)
T 3i3n_A           88 PEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKLHL--S-------NCVAIHSLAH  152 (279)
T ss_dssp             SCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHCCT--T-------THHHHHHHHH
T ss_pred             CCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcCCc--c-------hHHHHHHHHH
Confidence            468999999999999999999999999999999999975      899999999875432  2       3334444555


Q ss_pred             hhc---hHHHHHHHHHHhhcCCCCCcccccccCCCCCCCccccccCccccccccCCCCchhhhhcccChhHHHHHHHHHH
Q 008944           88 DLK---IIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVK  164 (548)
Q Consensus        88 ~l~---Iv~RCidsiA~ka~~dp~~~~ws~t~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDL~~L~idl~~rvi~amk  164 (548)
                      ..+   +...|.+-|+.....    +                                +--++...|+.+....++.   
T Consensus       153 ~~~~~~L~~~~~~~i~~~f~~----v--------------------------------~~~~~f~~L~~~~l~~lL~---  193 (279)
T 3i3n_A          153 MYTLSQLALKAADMIRRNFHK----V--------------------------------IQDEEFYTLPFHLIRDWLS---  193 (279)
T ss_dssp             HTTCHHHHHHHHHHHHHTHHH----H--------------------------------TTSSGGGGSCHHHHHHHHT---
T ss_pred             HcCcHHHHHHHHHHHHHHHHH----H--------------------------------hcCcChhcCCHHHHHHHhc---
Confidence            443   567888777655421    0                                0114556788888776663   


Q ss_pred             hcC-CCC-chhHHHHHHHHHHHHcCCcccccccchhhhhhHHHHHHHHhhcCCCCCCccchhHHHHHHHHhhhcCCCHHH
Q 008944          165 SKG-RMD-GSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSA  242 (548)
Q Consensus       165 s~g-~~~-~~~I~~~L~~Ya~r~Lp~~~~~~~~~~~~~~~r~llEtiV~LLP~ek~s~vsc~FL~~LLR~A~~l~as~~c  242 (548)
                      +.. .++ .+.|-++++    +|+..       +  ....+..+..   ||..-+-..+|..+|..+++..-++..++.|
T Consensus       194 ~d~L~v~sE~~vf~av~----~W~~~-------~--~~~r~~~~~~---ll~~VRf~l~~~~~L~~~v~~~~l~~~~~~c  257 (279)
T 3i3n_A          194 DLEITVDSEEVLFETVL----KWVQR-------N--AEERERYFEE---LFKLLRLSQMKPTYLTRHVKPERLVANNEVC  257 (279)
T ss_dssp             CSSCCCSCHHHHHHHHH----HHHHT-------T--HHHHTTTHHH---HHTTSCGGGSCHHHHHHTTTTSHHHHTCHHH
T ss_pred             CcCCCCCCHHHHHHHHH----HHHHc-------C--HHHHHHHHHH---HHHhcCCCCCCHHHHHHHhhccchhcCCHHH
Confidence            222 233 334555555    45431       0  0111233333   3433343348999999999988889999999


Q ss_pred             HHHHHH
Q 008944          243 REDLVK  248 (548)
Q Consensus       243 r~~Le~  248 (548)
                      +.-|..
T Consensus       258 ~~~l~e  263 (279)
T 3i3n_A          258 VKLVAD  263 (279)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

PyMOL of 3i3n

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A	Back alignment and structure

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}	Back alignment and structure

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}	Back alignment and structure

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}	Back alignment and structure

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0	Back alignment and structure

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}	Back alignment and structure

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A	Back alignment and structure

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A	Back alignment and structure

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}	Back alignment and structure

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}	Back alignment and structure

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}	Back alignment and structure

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}	Back alignment and structure

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B	Back alignment and structure

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}	Back alignment and structure

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A	Back alignment and structure

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A	Back alignment and structure

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A	Back alignment and structure

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A	Back alignment and structure

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}	Back alignment and structure

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		548
d1buoa_		121	Promyelocytic leukaemia zinc finger (PLZF) protein	97.57
d1r29a_		122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	97.55

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2e-05  Score=67.56  Aligned_cols=55  Identities=24%  Similarity=0.243  Sum_probs=49.1

Q ss_pred             ccCCCCCChHHHHHHHHhhcCccccccchhHHHHHhhhhhhcCCcccCCCChHHHHHHHhhhc
Q 008944            2 NIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSS   64 (548)
Q Consensus         2 ~l~dfPGG~eaFEl~AkFCYG~~v~lt~~NVv~lRCAAeyLeMtE~~~~gNLi~ktE~FL~~~   64 (548)
                      .+++++  |++|+...+|+|..+++++..||..+..||+||+|.+      |....+.||.++
T Consensus        66 ~~~~v~--~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~~~L~~i  120 (121)
T d1buoa_          66 TLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLKMLETI  120 (121)
T ss_dssp             EECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHHHHHHH
T ss_pred             ecCCCC--HHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHH------HHHHHHHHHHhC
Confidence            455654  8999999999999999999999999999999999986      888999999763

PyMOL of d1buoa_

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure