Citrus Sinensis ID: 008957

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
Protein Sequence
MLSTSSNRSDDVVDVDQNSQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHEEEcHHHHHHHHHHHHHHcccccccccccccccccccHHcHccHccccccccccHcHHccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccHHccccccc
Coil and Loop (DISEMBL)
mlstssnrsddvvdvdqnsqpnlpiqqsksqslshrppplaeAEMAtrslsedspptpswftpkrLLVIFCVINMLnyvdrgaiasngvngsqrtcddkgictsgsgiqgdfklnnfqdgvlSSAFMVGLLVASPIFAslakshnpfrliGVGLSVWTFatagcgssfdFWSIAICRMLVGVGEasfislaapfiddnapvpqktAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIkplqlkgfapaesgkAQVVASVSegseasnlndhvsedisdqasERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGaysywgpkagyniyhmsnadmmFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLvfatqapvnyVCLHSVKPSLRALSMAISTVSIhifgdvpssplvgvlQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKfnedgenqisldskanmkpllegngdnl
Flexible Loop (DISEMBL)
mlstssnrsddvvdvdqnsqpnlpiqqsksqslshrpPPLAEAEMATRslsedspptpswftpKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEgseasnlndhvsedisdqaSERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENqisldskanmkpllegngdnl
Low Complexity Region (SEG)
MLSTSSNRSddvvdvdQNSQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTgvalgyvyggvvgSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQvvasvsegseasNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFggvtivcgivgtisggFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Disordered region (IsUnstruct)
***********************************************************WFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA*************************************************QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKF***************************
Disordered Region (DISOPRED)
*************************************************************TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDK****************************
Disordered Region (DISEMBL)
*************DVDQNSQPNLP*********************************PSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS*********RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Disordered Region (DISPRO)
**********************************************************SWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL***************************************************LNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKF***************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSTSSNRSDDVVDVDQNSQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	547	2.2.26 [Sep-21-2011]
F4IKF6	510	Probable sphingolipid tra	yes	no	0.906	0.972	0.642	0.0
Q9FLG8	484	Probable sphingolipid tra	no	no	0.839	0.948	0.679	0.0
Q6NMN6	492	Probable sphingolipid tra	no	no	0.831	0.924	0.601	1e-168
A8WGF7	526	Protein spinster homolog	yes	no	0.669	0.695	0.266	4e-29
Q5XGK0	526	Protein spinster homolog	N/A	no	0.670	0.697	0.273	5e-29
Q9GQQ0	605	Protein spinster OS=Droso	yes	no	0.659	0.596	0.268	3e-28
A2SWM2	504	Protein spinster homolog	yes	no	0.707	0.767	0.248	3e-25
Q8IVW8	549	Protein spinster homolog	yes	no	0.711	0.708	0.241	4e-25
B0JZE1	513	Protein spinster homolog	no	no	0.829	0.884	0.244	6e-25
Q91VM4	549	Protein spinster homolog	yes	no	0.711	0.708	0.235	3e-24

>sp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/521 (64%), Positives = 396/521 (76%), Gaps = 25/521 (4%)

Query: 12  VVDVDQNSQPNLPIQQSKSQSLS-HRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIF 70
           +V  +++  P  P+ ++ S+  S     PLAE E   RSL  +   + S  +P  LLVIF
Sbjct: 1   MVTKEEDCLP--PVTETTSRCYSTSSSTPLAELE-TVRSL--EIVESSSSLSPVWLLVIF 55

Query: 71  CVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGL 130
           C+IN+LNY+DRGAIASNGVNGS R+C+DKG CT  +GIQG F L+NF+DGVLSS+FMVGL
Sbjct: 56  CIINLLNYMDRGAIASNGVNGSTRSCNDKGKCTLATGIQGHFNLSNFEDGVLSSSFMVGL 115

Query: 131 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL 190
           L+ASPIFASLAK     RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISL
Sbjct: 116 LIASPIFASLAK-----RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISL 170

Query: 191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA 250
           AAPFIDDNAP  QK AWL +FYMCIP+GVALGYVYGG VG H +WRYAFWGEA+LM PFA
Sbjct: 171 AAPFIDDNAPQEQKAAWLGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFA 230

Query: 251 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGES 310
           VL F++KPLQLKG            +   + +    +++ +  D  + + E S  S   +
Sbjct: 231 VLGFLMKPLQLKG------------SETLKNNNRLQVDNEIEHDQFEVSIETSKSSYANA 278

Query: 311 RFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF 370
            F    + F++D KVL +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+F
Sbjct: 279 VF-KSFTGFAKDMKVLYKEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIF 337

Query: 371 GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF 430
           G VTI+CGIVGT+SGGFILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF
Sbjct: 338 GAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALF 397

Query: 431 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW 490
            +GELLVFATQAPVNYVCLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++QDH+N+W
Sbjct: 398 ALGELLVFATQAPVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHINSW 457

Query: 491 RKTTLALTSIFFLAAGIWFVG-IFLKSIDKFNEDGENQISL 530
           RKTTL LTSI FLAA IWF+G I L S    +E    QI L
Sbjct: 458 RKTTLILTSILFLAAAIWFIGKINLNSFYSNDESFLVQIKL 498

Probable sphingolipid transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/490 (67%), Positives = 384/490 (78%), Gaps = 31/490 (6%)

Query: 52  EDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGD 111
           +D    PSWFTPK+LL +FCV+N++NY+DRGAIASNG+NGS+ +C   G C+SGSGIQGD
Sbjct: 24  KDPISEPSWFTPKKLLFVFCVVNLINYIDRGAIASNGINGSRGSCTSSGTCSSGSGIQGD 83

Query: 112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW 171
           F L+NF+DGVLSSAFMVGLLVASPIFASLAKS NPFRLIGVGLS+WT A  GCG SFDFW
Sbjct: 84  FNLSNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIGCGLSFDFW 143

Query: 172 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS 231
           SI ICRM VGVGEASF+SLAAPFIDDNAP  QK+AWL++FYMCIPTG A GYVYGGVVGS
Sbjct: 144 SITICRMFVGVGEASFVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGVVGS 203

Query: 232 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV 291
            L WR AFWGEAILMLPFAVL FVIKPL LKGFAP ++GK +            NLN   
Sbjct: 204 VLPWRAAFWGEAILMLPFAVLGFVIKPLHLKGFAPDDTGKPR----------TDNLN--- 250

Query: 292 SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY 351
                       +  +G        S   +D K+LL +KVYV N+LGYIAYNFV+GAYSY
Sbjct: 251 ------------VLPVGYG-----FSAVMKDLKLLLVDKVYVTNILGYIAYNFVLGAYSY 293

Query: 352 WGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA 411
           WGPKAGYNIY M NADM+FGGVT+VCGIVGT+SGG ILD M ATISNAFK+LS +TF+GA
Sbjct: 294 WGPKAGYNIYKMENADMIFGGVTVVCGIVGTLSGGVILDYMDATISNAFKVLSVSTFIGA 353

Query: 412 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIF 471
           I C  AFC  S+Y FLALF VGELLVFATQ PVN++ LH VKPSLR L+MA+STVSIHIF
Sbjct: 354 IFCFAAFCFKSMYAFLALFAVGELLVFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIF 413

Query: 472 GDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLD 531
           GDVPSSPLVGVLQD+VNNWR T+L LT + F AA IW +GIFL S+D++NED E   ++ 
Sbjct: 414 GDVPSSPLVGVLQDYVNNWRVTSLVLTFVLFPAAAIWSIGIFLNSVDRYNEDSEPD-AVT 472

Query: 532 SKANMKPLLE 541
            ++   PLL+
Sbjct: 473 RESTAAPLLQ 482

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1

 Score =  593 bits (1528), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/474 (60%), Positives = 357/474 (75%), Gaps = 19/474 (4%)

Query: 51  SEDSPPT--PSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGI 108
            E++PP     + TP R + I C+IN++NYVDRG IASNGVNGS + CD KG+C++G+GI
Sbjct: 12  KEEAPPATKKRFLTPGRFVTILCIINLINYVDRGVIASNGVNGSSKVCDAKGVCSAGTGI 71

Query: 109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 168
           QG+F L NF+DG+LSSAFMVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S+
Sbjct: 72  QGEFNLTNFEDGLLSSAFMVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSY 131

Query: 169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228
           +FW IA+ RM VGVGEASFISLAAP+IDD+APV +K  WL +FYMCIP GVALGYV+GG 
Sbjct: 132 NFWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGY 191

Query: 229 VGSHLNWRYAFWGEAILMLPFAVLAFVIKP-LQLKGFAPAESGKAQVVASVSEGSEASNL 287
           +G+HL WR+AF+ EAI M  F +L+F IKP  QLKGFA  +S K          ++A   
Sbjct: 192 IGNHLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKGFADKDSKKPSTSIETVAPTDAE-- 249

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
                   + Q   ++ KS       N +  F +D K L  EKV++VNVLGYI YNFVIG
Sbjct: 250 --------ASQIKTKTPKS------KNLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIG 295

Query: 348 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
           AYSYWGPKAG+ IY M NADM+FGG+TI+CGI+GT+ G ++LD++ AT+SN FKLL+A+T
Sbjct: 296 AYSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAAST 355

Query: 408 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS 467
            LGA  C TAF + ++Y F+ALF VGE+L+FA QAPVN+VCLH V+P+LR LSMA STV 
Sbjct: 356 LLGAAFCFTAFLMKNMYAFIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVL 415

Query: 468 IHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFN 521
           IHI GDVPSSPL G +QDH+ NWRK+TL +TSI FLAA IW +GIF+ S+D+ N
Sbjct: 416 IHILGDVPSSPLYGKMQDHLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDRSN 469

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|A8WGF7|SPNS1_XENTR Protein spinster homolog 1 OS=Xenopus tropicalis GN=spns1 PE=2 SV=2

 Score =  130 bits (326), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 193/443 (43%), Gaps = 77/443 (17%)

Query: 66  LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
           +++I   IN+LNY+DR  +A              G+    S I+ D+ +++   G++ + 
Sbjct: 61  IVIILFYINLLNYMDRFTVA--------------GVL---SDIKEDYHISDSNSGLVQTV 103

Query: 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVG 183
           F+   +  +P+F  L   +N   ++ +G+S W+  T  +   S   FW   + R LVGVG
Sbjct: 104 FICSYMFLAPVFGYLGDRYNRKLIMCIGISFWSLVTLLSSFVSKQYFWLFLLTRGLVGVG 163

Query: 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGE 242
           EAS+ ++A   I D     Q++  LS FY   P G  LGY+ G  V S   +W +A    
Sbjct: 164 EASYSTIAPTIIADLFLADQRSRMLSFFYFATPVGCGLGYIAGSKVTSTAGDWHWAL--- 220

Query: 243 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASER 302
                                         +V   +   +    +   V+++    A ER
Sbjct: 221 ------------------------------RVTPGLGLVAVLLLI--FVAKEPPRGALER 248

Query: 303 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGY 358
                   R L   S FS D K LL+   ++++  G+    FV GA + WGP    ++  
Sbjct: 249 K-----SDRPLTNTSWFS-DVKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRR 302

Query: 359 NIYH-------MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL 409
            IY        + N D  M+FGG+T V G++G ++G  I  +   T   A  L+ A   +
Sbjct: 303 VIYKTEPCQGGICNYDDSMIFGGITCVTGVLGVLTGVEISKRYRKTNPRADPLVCAVGMI 362

Query: 410 GAISCL---TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV 466
            +   L    AF  +SL    A   +GE L+    A V  + L+ V P+ R+ + A+  V
Sbjct: 363 SSAPFLYLSLAFADTSLVATYAFIFIGETLLSLNWALVADILLYVVIPTRRSTAEALQIV 422

Query: 467 SIHIFGDVPSSPLVGVLQDHVNN 489
             H+ GD  S  L+GV+ D +  
Sbjct: 423 VSHLLGDAGSPYLIGVISDQIQK 445

Sphingolipid transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q5XGK0|SPNS1_XENLA Protein spinster homolog 1 OS=Xenopus laevis GN=spns1 PE=2 SV=1

 Score =  129 bits (325), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 192/442 (43%), Gaps = 75/442 (16%)

Query: 66  LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
           +++I   IN+LNY+DR  +A              G+      I+  F +++   G++ + 
Sbjct: 61  IVIILFYINLLNYMDRFTVA--------------GVLPD---IKKAFNISDSNSGLVQTV 103

Query: 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVG 183
           F+   +  +P+F  L   +N   ++ VG+S W+  T  +   S+  FW   I R LVGVG
Sbjct: 104 FICSYMFLAPVFGYLGDRYNRKLIMCVGISFWSLVTLLSSFVSNQYFWLFLITRGLVGVG 163

Query: 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA 243
           EAS+ ++A   I D     Q+T  LS FY   P G  LGY    +VGS +      W  A
Sbjct: 164 EASYSTIAPTIIADLFLADQRTRMLSFFYFATPVGCGLGY----IVGSEMTSAAGDWHWA 219

Query: 244 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS 303
           + + P   L  V+  +                               V+E+    A ER 
Sbjct: 220 LRVTPGLGLLAVLLLI------------------------------FVAEEPPRGALERK 249

Query: 304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGYN 359
                  R L   S +S D K LL+   ++++  G+    FV GA + WGP    ++   
Sbjct: 250 -----TDRPLTNTS-WSSDMKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRMV 303

Query: 360 IYH-------MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG 410
           IY        + N D  M+FGG+T + GI+G ++G  I  +   T   A  L+ A   + 
Sbjct: 304 IYKSKPCEGGICNYDDSMIFGGITCITGILGVLTGVEISKRYRKTNPRADPLVCAVGMIS 363

Query: 411 AISCL---TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS 467
           +   L    AF  +SL        +GE L+    A V  + L+ V P+ R+ + A+  V 
Sbjct: 364 SAPFLFLSLAFADTSLVATYVFIFIGETLLSLNWALVADILLYVVIPTRRSTAEALQIVV 423

Query: 468 IHIFGDVPSSPLVGVLQDHVNN 489
            H+ GD  S  L+GV+ D +  
Sbjct: 424 SHLLGDAGSPYLIGVISDQIQK 445

Sphingolipid transporter.

Xenopus laevis (taxid: 8355)

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 194/443 (43%), Gaps = 82/443 (18%)

Query: 60  WFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQD 119
           WFT    + + C +N++NY+DR  IA              G+ T    ++ DF + N   
Sbjct: 114 WFT----VTVLCFVNLINYMDRFTIA--------------GVLTD---VRNDFDIGNDSA 152

Query: 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF-WSIAICRM 178
           G+L + F++  +V +PIF  L   ++   ++ VG+ +W+  T        F W IA  R 
Sbjct: 153 GLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFMKQFGWFIAF-RA 211

Query: 179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWR 236
           LVG+GEAS+ ++A   I D      ++  L++FY  IP G  LGY+ G    +HL  +WR
Sbjct: 212 LVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKT-AHLANDWR 270

Query: 237 YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDIS 296
           +A     IL +    L  +IK                 V   SEGS   NL         
Sbjct: 271 WALRVTPILGIVAVFLILLIK---------------DPVRGHSEGSH--NL--------- 304

Query: 297 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA 356
                             + + + QD K L++ + ++++  G+    FV GA ++WGP  
Sbjct: 305 ------------------EATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSF 346

Query: 357 GYNIYHMS--NADMM-------FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
            Y    M   N +++       FG +T++ G++G   G F+   +      A  ++ A  
Sbjct: 347 IYLGMKMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADPVICAFG 406

Query: 408 FLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS 464
            L +   LT  CL   S+  G  AL   G+L +    A V  + L+ V P+ R+ + A  
Sbjct: 407 LLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADILLYVVVPTRRSTAEAFQ 466

Query: 465 TVSIHIFGDVPSSPLVGVLQDHV 487
            +  H  GD  S  LVG + + +
Sbjct: 467 ILISHALGDAGSPYLVGAISEAI 489

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.

Drosophila melanogaster (taxid: 7227)

>sp|A2SWM2|SPNS2_DANRE Protein spinster homolog 2 OS=Danio rerio GN=spns2 PE=1 SV=2

 Score =  117 bits (292), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 198/490 (40%), Gaps = 103/490 (21%)

Query: 74  NMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVA 133
           N+LNY+DR  +A   ++                 IQ  FK+ +   G+L + F+   +VA
Sbjct: 65  NVLNYMDRYTVAGVLLD-----------------IQKQFKVGDSSAGLLQTVFICSFMVA 107

Query: 134 SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFIS 189
           +PIF  L    N   ++  G+  W+  T    SSF     +W + + R LVG+GE+S+ S
Sbjct: 108 APIFGYLGDRFNRKIILSCGIFFWSAVTLL--SSFITKEYYWLLVLSRCLVGIGESSYSS 165

Query: 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV---VGSHLNWRYAFWGEAILM 246
           ++   I D     ++T  LS+FY+ IP G  LGY+ G +    G H  W +A     +L 
Sbjct: 166 ISPTIIGDLFTNNKRTVMLSVFYLAIPLGSGLGYILGSIAKDAGGH--WYWALRVSPMLG 223

Query: 247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 306
           L    L  +                      VSE    S          +DQ   R    
Sbjct: 224 LTAGTLILIF---------------------VSEPKRGS----------ADQPGGR---- 248

Query: 307 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK----------- 355
                 L   + +  D K L + + YV + L   A +F  GA+  W P+           
Sbjct: 249 ------LKTRTSWVCDMKALAKNRSYVFSSLASAAVSFATGAFGIWIPQYLVRAQVVQKS 302

Query: 356 AGYNIYH--MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA-- 411
           A    Y    S   ++FG +T V G++G + G             A  L+ A + LG+  
Sbjct: 303 AESCTYQPCSSRDSLIFGAITCVTGLLGVVIGAVTTRLCRQKTERADPLVCAVSMLGSAI 362

Query: 412 -ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI 470
            I  +      S+ G      +GE L+F   A    + ++ V P+ RA ++A    + H+
Sbjct: 363 FICLIFVVAKKSIVGAYICIFIGETLLFLNWAITADILMYVVIPTRRATAVAFQGFTSHL 422

Query: 471 FGDVPSSPLVGVLQDHVNN-------WRKTTLA-----------LTSIFFLAAGIWFVGI 512
            GD  S  L+G++ D +         W+  +L            L  +FFLA  ++F+  
Sbjct: 423 LGDAGSPYLIGLISDSLQESYATSEIWQFLSLGYALMLCPFVIVLGGMFFLATALFFLDD 482

Query: 513 FLKSIDKFNE 522
             K+  + N+
Sbjct: 483 RDKAAKQVNQ 492

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Danio rerio (taxid: 7955)

>sp|Q8IVW8|SPNS2_HUMAN Protein spinster homolog 2 OS=Homo sapiens GN=SPNS2 PE=1 SV=2

 Score =  116 bits (291), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 118/488 (24%), Positives = 194/488 (39%), Gaps = 99/488 (20%)

Query: 74  NMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVA 133
           N+LNY+DR  +A   ++                 IQ  F + +   G+L S F+   +VA
Sbjct: 112 NVLNYLDRYTVAGVLLD-----------------IQQHFGVKDRGAGLLQSVFICSFMVA 154

Query: 134 SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFIS 189
           +PIF  L    N   ++  G+  W+  T    SSF     FW + + R LVG+GEAS+ +
Sbjct: 155 APIFGYLGDRFNRKVILSCGIFFWSAVTFS--SSFIPQQYFWLLVLSRGLVGIGEASYST 212

Query: 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLP 248
           +A   I D      +T  LS+FY  IP G  LGY+ G  V     +W +A     +L + 
Sbjct: 213 IAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHWALRVSPVLGMI 272

Query: 249 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG 308
              L  ++ P   +G A                           + + DQ   R      
Sbjct: 273 TGTLILILVPATKRGHA---------------------------DQLGDQLKAR------ 299

Query: 309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-- 366
                   + + +D K L++ + YV + L   A +F  GA   W P   +    +     
Sbjct: 300 --------TSWLRDMKALIRNRSYVFSSLATSAVSFATGALGMWIPLYLHRAQVVQKTAE 351

Query: 367 -----------DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA---I 412
                       ++FG +T   G +G ++G             A  L+ A   LG+   I
Sbjct: 352 TCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRLKTQRADPLVCAVGMLGSAIFI 411

Query: 413 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG 472
             +     SS+ G      VGE L+F+  A    + ++ V P+ RA ++A+ + + H+ G
Sbjct: 412 CLIFVAAKSSIVGAYICIFVGETLLFSNWAITADILMYVVIPTRRATAVALQSFTSHLLG 471

Query: 473 DVPSSPLVGVLQDHVNN-------WRKTTLA-----------LTSIFFLAAGIWFVGIFL 514
           D  S  L+G + D +         W   +L            L  +FFLA  ++FV    
Sbjct: 472 DAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPFVVVLGGMFFLATALFFVSDRA 531

Query: 515 KSIDKFNE 522
           ++  + N+
Sbjct: 532 RAEQQVNQ 539

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Homo sapiens (taxid: 9606)

>sp|B0JZE1|SPNS2_XENTR Protein spinster homolog 2 OS=Xenopus tropicalis GN=spns2 PE=2 SV=1

 Score =  115 bits (289), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 141/577 (24%), Positives = 226/577 (39%), Gaps = 123/577 (21%)

Query: 11  DVVDVDQNSQPNLPIQQSKS-QSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLV- 68
           D V    NSQ  +P  + +  ++L  R  P +    A    S  S P  + +  KR  V 
Sbjct: 6   DGVGTVSNSQGCIPGAEERGLETLPGRMNPTSLDVKAVELESSSSKPDKA-YNWKRASVA 64

Query: 69  ---IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
              I  V N+LNY+DR  +A   ++                 IQ  F++ +   G+L + 
Sbjct: 65  AAGILSVGNVLNYLDRYTVAGVLLD-----------------IQQHFEVKDSGAGLLQTV 107

Query: 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVW---TFATAGCGSSFDFWSIAICRMLVGV 182
           F+   +VA+PIF  L    N   ++  G+  W   TF+++     + FW + + R LVG+
Sbjct: 108 FICSFMVAAPIFGYLGDRFNRKVILSSGIFFWSAITFSSSFIPKKY-FWLLVLSRGLVGI 166

Query: 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWG 241
           GEAS+ ++A   I D      +T  LS+FY  IP G  LGY+ G  V     +WR+A   
Sbjct: 167 GEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQVAGDWRWALRV 226

Query: 242 EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE 301
             +L +    L  +  P   +G A    G                               
Sbjct: 227 SPVLGVITGTLLLIFVPTAKRGHAEQLKG------------------------------- 255

Query: 302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY--- 358
                          S + +D + L++ + YV + L     +F  GA   W P   Y   
Sbjct: 256 ---------------SSWIRDMRGLIKNRSYVFSSLATSTVSFATGALGMWIPLYLYRAQ 300

Query: 359 ---------NIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF 408
                    NI   S  D ++FG +T + G +G I G             A  L+ A   
Sbjct: 301 VVQKSVEPCNIPPCSTKDSLIFGAITCLTGFLGVIIGAGATKWCRRKTQRADPLVCAVGM 360

Query: 409 LGA--ISCLTAFCLSS--LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS 464
           LG+    CL      S  +  ++ +F  GE L+F+  A    + ++ V P+ RA ++A+ 
Sbjct: 361 LGSAIFICLVFVAAKSSIIAAYICIFA-GETLLFSNWAITADMLMYVVIPTRRATAVALQ 419

Query: 465 TVSIHIFGDVPSSPLVGVLQDHVNN-------WRKTTLA-----------LTSIFFLAAG 506
           + + H+ GD  S  L+G + D +         W   +L            L  +FFLA  
Sbjct: 420 SFTSHLLGDAGSPYLIGFISDLIQQSTTKSSLWEFLSLGYALMLCPFVVVLGGMFFLATA 479

Query: 507 IWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 543
           ++F+           ED E    L+  ++  P   GN
Sbjct: 480 LFFL-----------EDREKAEKLEPCSD--PFTVGN 503

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Xenopus tropicalis (taxid: 8364)

>sp|Q91VM4|SPNS2_MOUSE Protein spinster homolog 2 OS=Mus musculus GN=Spns2 PE=2 SV=2

 Score =  113 bits (283), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 192/488 (39%), Gaps = 99/488 (20%)

Query: 74  NMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVA 133
           N+LNY+DR  +A   ++                 IQ  F + +   G+L S F+   +VA
Sbjct: 112 NVLNYLDRYTVAGVLLD-----------------IQQHFGVKDRGAGLLQSVFICSFMVA 154

Query: 134 SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFIS 189
           +PIF  L    N   ++  G+  W+  T    SSF     FW + + R LVG+GEAS+ +
Sbjct: 155 APIFGYLGDRFNRKVILSCGIFFWSAVTFS--SSFIPQQYFWLLVLSRGLVGIGEASYST 212

Query: 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLP 248
           +A   I D      +T  LS+FY  IP G  LGY+ G  V     +W +A     +L + 
Sbjct: 213 IAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHWALRVSPVLGMI 272

Query: 249 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG 308
              L  ++ P   +G A    G+                                     
Sbjct: 273 TGTLILILVPATKRGHADQLGGQ------------------------------------- 295

Query: 309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-- 366
               L   + + +D K L++ + YV + L   A +F  GA   W P   +    +     
Sbjct: 296 ----LKARTSWLRDMKALIRNRSYVFSSLATSAVSFATGALGMWIPLYLHRAQVVQKTAE 351

Query: 367 -----------DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA---I 412
                       ++FG +T   G +G ++G             A  L+ A   LG+   I
Sbjct: 352 TCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRLRTQRADPLVCAVGMLGSAIFI 411

Query: 413 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG 472
             +     +S+ G      VGE L+F+  A    + ++ V P+ RA ++A+ + + H+ G
Sbjct: 412 CLIFVAAKTSIVGAYICIFVGETLLFSNWAITADILMYVVIPTRRATAVALQSFTSHLLG 471

Query: 473 DVPSSPLVGVLQDHVNNWRKTT------------------LALTSIFFLAAGIWFVGIFL 514
           D  S  L+G + D +    K +                  + L  +FFLA  ++F+    
Sbjct: 472 DAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPFVVVLGGMFFLATALFFLSDRA 531

Query: 515 KSIDKFNE 522
           K+  + N+
Sbjct: 532 KAEQQVNQ 539

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	547
255576025	505	transporter, putative [Ricinus communis]	0.899	0.974	0.800	0.0
297735860	534	unnamed protein product [Vitis vinifera]	0.917	0.940	0.767	0.0
359480514	510	PREDICTED: protein spinster homolog 1-li	0.901	0.966	0.777	0.0
255554517	541	transporter, putative [Ricinus communis]	0.943	0.953	0.708	0.0
357485271	497	Spinster-like protein [Medicago truncatu	0.884	0.973	0.727	0.0
356531403	496	PREDICTED: protein spinster homolog 1-li	0.882	0.973	0.735	0.0
356546730	532	PREDICTED: protein spinster homolog 1-li	0.932	0.958	0.687	0.0
356519493	530	PREDICTED: protein spinster homolog 1-li	0.932	0.962	0.687	0.0
224105833	468	sugar transporter/spinster transmembrane	0.850	0.993	0.716	0.0
218195245	596	hypothetical protein OsI_16710 [Oryza sa	0.908	0.833	0.690	0.0

>gi|255576025|ref|XP_002528908.1| transporter, putative [Ricinus communis] gi|223531662|gb|EEF33488.1| transporter, putative [Ricinus communis]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/496 (80%), Positives = 440/496 (88%), Gaps = 4/496 (0%)

Query: 48  RSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSG 107
           R+ + DS   PSWFTPKRLL++FCVINM+NYVDRGAIASNGVNGS RTCD+KGIC SGSG
Sbjct: 3   RTSTNDSSSDPSWFTPKRLLMLFCVINMINYVDRGAIASNGVNGSIRTCDEKGICNSGSG 62

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           IQGDF LNNFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSS
Sbjct: 63  IQGDFNLNNFQDGVLSSAFMVGLLLASPIFASLAKSHNPFRLIGVGLSVWTFAAAGCGSS 122

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
           FDFWSIAICRMLVGVGEASFISLAAPFIDDNAP  QKTAWL+ FYMCIPTGVALGYVYGG
Sbjct: 123 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPAAQKTAWLATFYMCIPTGVALGYVYGG 182

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL 287
            VGS+ NWRYAFWGEA+LMLPFAVL F +KPLQLKGFAPAES KA + +S+   + AS  
Sbjct: 183 FVGSNFNWRYAFWGEALLMLPFAVLGFAMKPLQLKGFAPAESKKA-LTSSIE--ANASIT 239

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
            D+ +EDIS +A + S K  GE   L+QLSQFS+D KVLL +KVYVVNVLGYI+YNFVIG
Sbjct: 240 EDNGNEDISSRAFKAS-KLKGEFTILHQLSQFSKDMKVLLVDKVYVVNVLGYISYNFVIG 298

Query: 348 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
           AYSYWGPKAGYNIYHMSNADMMFGGVTI+CGI+GT++GGFILD+M ATISNAFKLLS AT
Sbjct: 299 AYSYWGPKAGYNIYHMSNADMMFGGVTIICGILGTLAGGFILDRMNATISNAFKLLSGAT 358

Query: 408 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS 467
           FLGAI C +AFCL +LYGF+ LF+VGELLVFATQAPVNYVCLH VKP LR LSMAISTVS
Sbjct: 359 FLGAIFCFSAFCLKNLYGFIILFSVGELLVFATQAPVNYVCLHCVKPGLRPLSMAISTVS 418

Query: 468 IHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQ 527
           IHIFGDVPSSPLVGVLQDH+NNWR+T+L LT++ F+AAGIWFVG+FLK +D  NEDGENQ
Sbjct: 419 IHIFGDVPSSPLVGVLQDHINNWRETSLILTAVLFIAAGIWFVGVFLKGVDMSNEDGENQ 478

Query: 528 ISLDSKANMKPLLEGN 543
           IS + K +M+PLLE N
Sbjct: 479 ISANVKGSMEPLLEEN 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735860|emb|CBI18614.3| unnamed protein product [Vitis vinifera]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/508 (76%), Positives = 435/508 (85%), Gaps = 6/508 (1%)

Query: 43  AEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGIC 102
           +EMA   +  D    PSWFTPKRLL+IFCVINMLNYVDRGAIASNGVNGS +TC + G+C
Sbjct: 23  SEMAKTPIG-DHASNPSWFTPKRLLIIFCVINMLNYVDRGAIASNGVNGSLKTCSESGVC 81

Query: 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA 162
           T GSGIQGDF L+NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATA
Sbjct: 82  TPGSGIQGDFNLSNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATA 141

Query: 163 GCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG 222
           GCGSSFDFWSIAI RMLVGVGEASF+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALG
Sbjct: 142 GCGSSFDFWSIAIFRMLVGVGEASFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALG 201

Query: 223 YVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS 282
           YVYGG VG H NWRYAFWGEAILMLPFAVL FV+KPLQLKGFAPAES K   V   +EG 
Sbjct: 202 YVYGGFVGEHFNWRYAFWGEAILMLPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGP 260

Query: 283 EASNLNDHV---SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY 339
             SN+N  V   +E IS+ AS ++ KS G  +  NQ  +F  D K+LL +KVYVVNVLGY
Sbjct: 261 GLSNVNGGVLIRNELISNNASNKASKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGY 320

Query: 340 IAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNA 399
           ++YNFVIGAYSYWGPKAGYNIYHM+NADMMFGG+TIVCGI+GT++GG+ILD M ATISNA
Sbjct: 321 VSYNFVIGAYSYWGPKAGYNIYHMNNADMMFGGITIVCGILGTLAGGYILDCMDATISNA 380

Query: 400 FKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL 459
           FKLLS ATFLGAI C  +FCL  LYGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR L
Sbjct: 381 FKLLSGATFLGAIFCFISFCLKGLYGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPL 440

Query: 460 SMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDK 519
           SMA+STV+IHIFGDVPSSPLVG+LQDHVNNWR+TTL LTS+ FLA+GIWF+G+FL S+D+
Sbjct: 441 SMAMSTVAIHIFGDVPSSPLVGILQDHVNNWRETTLILTSVLFLASGIWFLGVFLDSVDR 500

Query: 520 FNEDGENQISLDSKANMKPLLEGNGDNL 547
           F  D ENQ S+ SKA MKPLLEG  D +
Sbjct: 501 FKLDSENQ-SVQSKATMKPLLEGEDDEM 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480514|ref|XP_002273321.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/498 (77%), Positives = 430/498 (86%), Gaps = 5/498 (1%)

Query: 53  DSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF 112
           D    PSWFTPKRLL+IFCVINMLNYVDRGAIASNGVNGS +TC + G+CT GSGIQGDF
Sbjct: 8   DHASNPSWFTPKRLLIIFCVINMLNYVDRGAIASNGVNGSLKTCSESGVCTPGSGIQGDF 67

Query: 113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS 172
            L+NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATAGCGSSFDFWS
Sbjct: 68  NLSNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSFDFWS 127

Query: 173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH 232
           IAI RMLVGVGEASF+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG VG H
Sbjct: 128 IAIFRMLVGVGEASFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGFVGEH 187

Query: 233 LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV- 291
            NWRYAFWGEAILMLPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N  V 
Sbjct: 188 FNWRYAFWGEAILMLPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVNGGVL 246

Query: 292 --SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY 349
             +E IS+ AS ++ KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFVIGAY
Sbjct: 247 IRNELISNNASNKASKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFVIGAY 306

Query: 350 SYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL 409
           SYWGPKAGYNIYHM+NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS ATFL
Sbjct: 307 SYWGPKAGYNIYHMNNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSGATFL 366

Query: 410 GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIH 469
           GAI C  +FCL  LYGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR LSMA+STV+IH
Sbjct: 367 GAIFCFISFCLKGLYGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPLSMAMSTVAIH 426

Query: 470 IFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQIS 529
           IFGDVPSSPLVG+LQDHVNNWR+TTL LTS+ FLA+GIWF+G+FL S+D+F  D ENQ S
Sbjct: 427 IFGDVPSSPLVGILQDHVNNWRETTLILTSVLFLASGIWFLGVFLDSVDRFKLDSENQ-S 485

Query: 530 LDSKANMKPLLEGNGDNL 547
           + SKA MKPLLEG  D +
Sbjct: 486 VQSKATMKPLLEGEDDEM 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554517|ref|XP_002518297.1| transporter, putative [Ricinus communis] gi|223542517|gb|EEF44057.1| transporter, putative [Ricinus communis]

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/525 (70%), Positives = 428/525 (81%), Gaps = 9/525 (1%)

Query: 26  QQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIA 85
           +Q K  S S  P P  +A+MA +  +  S P PSWFTP+RLLVIFC+IN++NYVDRGAIA
Sbjct: 8   KQVKPLSSSEEPNPSRDAQMA-KVPTPSSAPAPSWFTPRRLLVIFCIINLINYVDRGAIA 66

Query: 86  SNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145
           SNGVNG++RTC   G CTSGSGIQGDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS N
Sbjct: 67  SNGVNGNRRTCTS-GTCTSGSGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSFN 125

Query: 146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT 205
           PFRLIGVGLSVWT A  GCG S +FWSI ICRM VGVGEASFISLAAPFIDDNAPV QKT
Sbjct: 126 PFRLIGVGLSVWTLAVVGCGFSINFWSITICRMFVGVGEASFISLAAPFIDDNAPVAQKT 185

Query: 206 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265
           AWL++FYMCIP+G A GYVYGG+VG H NWR+AFWGEAILMLPF VL F++KPLQLKGFA
Sbjct: 186 AWLAIFYMCIPSGYAFGYVYGGLVGDHANWRWAFWGEAILMLPFVVLGFLMKPLQLKGFA 245

Query: 266 PAESGKA--QVVASVSE-----GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ 318
           PAES KA   V  +VSE      S     N  V E+++D++ + S  S   +  LNQ S+
Sbjct: 246 PAESKKALTSVETAVSEVQDTETSAGKGENLSVKEELNDKSPKPSCMSRYATFSLNQFSR 305

Query: 319 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCG 378
           F +D K LL EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY+M+NADM+FGG+TIVCG
Sbjct: 306 FIKDMKALLVEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYNMTNADMIFGGITIVCG 365

Query: 379 IVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVF 438
           I+GT++GG+ILD M +TI NAFKLLS ATFLGAI C +AFC  S+Y FLALF +GELLVF
Sbjct: 366 ILGTMAGGYILDYMTSTIPNAFKLLSVATFLGAIFCFSAFCFKSMYVFLALFAIGELLVF 425

Query: 439 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALT 498
           ATQ PVNY+CLH VKPS+R LSMA+S VSIHIFGDVPSSPLVGVLQD +NNWR T L LT
Sbjct: 426 ATQGPVNYICLHCVKPSMRPLSMAMSIVSIHIFGDVPSSPLVGVLQDKINNWRLTALILT 485

Query: 499 SIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 543
           +I F AA IWF+GIFLKS+DKFNE+ E+Q+++  ++N  PLLEG 
Sbjct: 486 AILFPAAFIWFIGIFLKSVDKFNEESEHQVAVTDRSNTTPLLEGK 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485271|ref|XP_003612923.1| Spinster-like protein [Medicago truncatula] gi|355514258|gb|AES95881.1| Spinster-like protein [Medicago truncatula]

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/492 (72%), Positives = 411/492 (83%), Gaps = 8/492 (1%)

Query: 55  PPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKL 114
           PP PSWFTPKRLL+IFC+IN++NYVDRGAIASNGVNG+  TC + G+CT+G+GIQGDF L
Sbjct: 8   PPNPSWFTPKRLLIIFCIINLINYVDRGAIASNGVNGTLETCTESGVCTAGTGIQGDFNL 67

Query: 115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA 174
           +NFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSSFDFWSIA
Sbjct: 68  SNFQDGVLSSAFMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTFAVAGCGSSFDFWSIA 127

Query: 175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN 234
           ICRMLVGVGEASFISLAAPFIDDNAPV QKTAWL+ FYMCIP G ALGYVYGG+VGS  N
Sbjct: 128 ICRMLVGVGEASFISLAAPFIDDNAPVAQKTAWLATFYMCIPAGTALGYVYGGLVGSQFN 187

Query: 235 WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED 294
           WR AFWGEAI MLPF +L F+IKPLQLKGF P ES + +   + +E + + N +D +  +
Sbjct: 188 WRVAFWGEAIFMLPFPILGFLIKPLQLKGFGPMESKQTR---TSNETNVSENGDDGILAE 244

Query: 295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP 354
             DQA  R  K    S+  NQ ++F  D + LL E+VYV+NVLGYIAYNFVIGAYSYWGP
Sbjct: 245 --DQAFIRGSKL--TSKLGNQFTRFLNDMQELLHERVYVINVLGYIAYNFVIGAYSYWGP 300

Query: 355 KAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 414
           KAGY+IYHMSNAD++FGG+TIVCGI GT++GG ILD+M +TISNAFK+LS ATFLGAI C
Sbjct: 301 KAGYSIYHMSNADLLFGGITIVCGIFGTLAGGLILDKMSSTISNAFKILSGATFLGAIFC 360

Query: 415 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV 474
           L AF    L+GF+ LF+VGELL+FATQAPVNYV L  VKPSLR LSMAISTVSIHIFGDV
Sbjct: 361 LVAFLFKGLFGFIILFSVGELLIFATQAPVNYVSLRCVKPSLRPLSMAISTVSIHIFGDV 420

Query: 475 PSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDS-K 533
           PS+PLVGVLQDH+N+WRKT++ LTSIFFLAAG+WF+G FLKS D FN+D E   S  + +
Sbjct: 421 PSAPLVGVLQDHINDWRKTSICLTSIFFLAAGVWFIGTFLKSDDLFNKDDEEDESTTTLR 480

Query: 534 ANMKPLLEGNGD 545
              KPLLEG  D
Sbjct: 481 GVRKPLLEGIND 492

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531403|ref|XP_003534267.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/491 (73%), Positives = 407/491 (82%), Gaps = 8/491 (1%)

Query: 56  PTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLN 115
           P PSWFTPKRLL+IFC+INMLNYVDRGAIASNGVNGS  TC D GICT GSGIQGDF LN
Sbjct: 9   PNPSWFTPKRLLMIFCLINMLNYVDRGAIASNGVNGSLATCTDSGICTGGSGIQGDFNLN 68

Query: 116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI 175
           NFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWT A AGCGSSFDFWSIAI
Sbjct: 69  NFQDGVLSSAFMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTLAIAGCGSSFDFWSIAI 128

Query: 176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW 235
           CRMLVGVGEASFISLAAPFIDDNAP  QKTAWL+ FYMCIP G ALGYVYGG+VGS  NW
Sbjct: 129 CRMLVGVGEASFISLAAPFIDDNAPDAQKTAWLATFYMCIPAGTALGYVYGGIVGSQFNW 188

Query: 236 RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI 295
           R AFW EAILMLPF +L FVIKPLQLKGFAP ES K  +  + +  SE  + +D ++E  
Sbjct: 189 RVAFWVEAILMLPFPILGFVIKPLQLKGFAPLES-KQTLTYTETNVSETGD-DDTLAE-- 244

Query: 296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK 355
            DQA  +  KS   S+  NQ + FS+D + LL ++VYV+NVLGYIAYNFVIGAYSYWGPK
Sbjct: 245 -DQALLKGSKS--TSKLWNQFTIFSKDMQELLHDQVYVINVLGYIAYNFVIGAYSYWGPK 301

Query: 356 AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL 415
           AGY+IYHM+NAD++FGG+TIVCGIVGT++GG  LD++ +TISNAFKLLS ATFLGAI CL
Sbjct: 302 AGYSIYHMNNADLLFGGITIVCGIVGTLAGGLFLDRISSTISNAFKLLSGATFLGAIFCL 361

Query: 416 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP 475
            AF   SL GF+  F++GELL+F TQAPVNYV L  VKPSLR LSMAISTVSIH+FGDVP
Sbjct: 362 IAFLFKSLSGFIVFFSMGELLIFVTQAPVNYVSLRCVKPSLRPLSMAISTVSIHVFGDVP 421

Query: 476 SSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKAN 535
           SSPLVGVLQDH+N+WRKT L LTSIFFLAA IWF+GIFLKS D +++D E Q +      
Sbjct: 422 SSPLVGVLQDHINDWRKTALCLTSIFFLAAVIWFIGIFLKS-DVYDKDDEEQSATTRGGK 480

Query: 536 MKPLLEGNGDN 546
           + PLL+G+ D 
Sbjct: 481 LTPLLDGSSDT 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546730|ref|XP_003541776.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/522 (68%), Positives = 416/522 (79%), Gaps = 12/522 (2%)

Query: 26  QQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIA 85
           Q   SQ      P L E  ++T        PT SWFTPKRLL IFCVIN+LNYVDRGAIA
Sbjct: 3   QDDHSQVKPKPSPQLVEPRISTMI------PTASWFTPKRLLAIFCVINLLNYVDRGAIA 56

Query: 86  SNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145
           SNGVNGS+ TC + G CTSGSGIQGDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS N
Sbjct: 57  SNGVNGSKGTCTEGGTCTSGSGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSVN 116

Query: 146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT 205
           PFRLIGVGLSVWT AT  CG SF+FWSI+ICRMLVGVGEASFISLAAPFIDDNAPV QKT
Sbjct: 117 PFRLIGVGLSVWTLATLCCGFSFNFWSISICRMLVGVGEASFISLAAPFIDDNAPVTQKT 176

Query: 206 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265
           AWL++FYMCIP+G ALGYVYGG+VGSHL WRYAFW E++ M+PFA+    +KPLQL+GF 
Sbjct: 177 AWLAIFYMCIPSGYALGYVYGGLVGSHLGWRYAFWVESLFMVPFAISGLFMKPLQLRGFV 236

Query: 266 PAESGKA---QVVASVSEGSEASNLNDH---VSEDISDQASERSIKSIGESRFLNQLSQF 319
           PA+S K    + VAS  +  EASN  D    +  ++ D++S    KS   ++   + S+F
Sbjct: 237 PADSKKTLTPETVASGVQVMEASNGKDEPLSLKAELRDKSSNDHSKSKSVTQIFEKFSRF 296

Query: 320 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGI 379
             D K LL +KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM++AD++FGG+TIVCGI
Sbjct: 297 LNDMKELLLDKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMTDADLIFGGITIVCGI 356

Query: 380 VGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA 439
           VGT++GGF+LD M  T+SNAFKLLS  TF+GA  C  AF   S+YGFLALF++GELLVFA
Sbjct: 357 VGTLAGGFVLDYMSNTLSNAFKLLSITTFIGAAFCFGAFLFRSMYGFLALFSIGELLVFA 416

Query: 440 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS 499
           TQ PVNYVCL  VKPSLR LSMA+STV IHIFGDVPSSPLVGVLQD++NNWR T L LTS
Sbjct: 417 TQGPVNYVCLRCVKPSLRPLSMAMSTVVIHIFGDVPSSPLVGVLQDNINNWRTTALILTS 476

Query: 500 IFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLE 541
           I FLAAGIWF+GIFL ++D+F+ED E+Q+S   ++N  PLL+
Sbjct: 477 ILFLAAGIWFIGIFLHTVDRFDEDSEHQVSNVERSNTMPLLQ 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519493|ref|XP_003528407.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/522 (68%), Positives = 418/522 (80%), Gaps = 12/522 (2%)

Query: 28  SKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASN 87
           ++ Q    +P    E +M T S      P+ SWFTPKRLL IFCVIN+LNY+DRGAIASN
Sbjct: 2   AQQQEHEGKPESSLEPDMGTNS---TMIPSTSWFTPKRLLAIFCVINLLNYLDRGAIASN 58

Query: 88  GVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF 147
           GVNGSQRTC+  G C SG+GIQGDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS NPF
Sbjct: 59  GVNGSQRTCEG-GTCKSGTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSVNPF 117

Query: 148 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 207
           RLIGVGLSVWT AT  CG SF+FWSIA+CRMLVGVGEASFISLAAPFIDDNAPV QKTAW
Sbjct: 118 RLIGVGLSVWTLATLCCGFSFNFWSIAVCRMLVGVGEASFISLAAPFIDDNAPVSQKTAW 177

Query: 208 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 267
           L++FYMCIP G A+GY+YGG+VG+H  WRY FW EAILM PFA+L FV+KPLQLKGFAP 
Sbjct: 178 LAIFYMCIPAGYAIGYIYGGLVGNHFGWRYGFWVEAILMSPFAILGFVMKPLQLKGFAPT 237

Query: 268 ESGKAQVVASV-SEGSE--ASNLNDH---VSEDISDQASERSIKSIGESRFLNQLSQFSQ 321
           +S KA  + +V SE S+  ASN  D    +  +  D++S    +S  +   L+Q S+F +
Sbjct: 238 DSEKALTLGTVASEVSDVGASNGKDEALSLKAEFRDKSSHEPSRS--KCTILDQFSRFLK 295

Query: 322 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVG 381
           D K LL +KV+VVNVLGYIAYNFVIGAYSYWGPKAGY+IY+M+NADMMFGG+T+VCGI+G
Sbjct: 296 DMKELLLDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMMFGGITVVCGILG 355

Query: 382 TISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
           T++GGF+LD M  TISNAFKLLS ATF+G   C  AF   S YGFLALF VGELLVFATQ
Sbjct: 356 TVAGGFVLDFMTNTISNAFKLLSIATFIGGACCFGAFLFKSQYGFLALFAVGELLVFATQ 415

Query: 442 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF 501
            PVNYVCLH VKPSLR LSMA+STV+IHIFGDVPSSPLVG++QD +NNWR T L LT+IF
Sbjct: 416 GPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGLMQDKINNWRTTALILTTIF 475

Query: 502 FLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 543
           F AA IWF+GIFL S+D+FNED E+++S   + +  PLLE N
Sbjct: 476 FPAAAIWFIGIFLPSVDRFNEDSEHEVSSVERTSTAPLLEEN 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105833|ref|XP_002313948.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa] gi|222850356|gb|EEE87903.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/494 (71%), Positives = 402/494 (81%), Gaps = 29/494 (5%)

Query: 48  RSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSG 107
           RS +  SPP PSWFTPKRLLVIFCVIN++NYVDRGAIASNGVNGS+RTC   G CT GSG
Sbjct: 3   RSSTALSPPAPSWFTPKRLLVIFCVINLINYVDRGAIASNGVNGSRRTCSKSGTCTFGSG 62

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           IQGDF L+NF+DGVLSSAFMVGLLVA PIFASLAKS NPFRLIGVGLSVWT A  GCG S
Sbjct: 63  IQGDFNLSNFEDGVLSSAFMVGLLVACPIFASLAKSVNPFRLIGVGLSVWTVAVVGCGFS 122

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
           F+FW+I ICRMLVGVGEASFISLAAPFIDDNAPV +KT WL +FYMCIPTG ALGYVYGG
Sbjct: 123 FNFWTITICRMLVGVGEASFISLAAPFIDDNAPVAKKTLWLGIFYMCIPTGYALGYVYGG 182

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL 287
           ++G H NWR+AF+GEAILMLPFAVL FV+KPLQLKGFAPAES KA               
Sbjct: 183 LIGGHFNWRFAFYGEAILMLPFAVLGFVMKPLQLKGFAPAESKKAL-------------- 228

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
                      + E ++  +  ++F    S+F  D KVLL EKVYVVNVLGYIAYNFVIG
Sbjct: 229 ----------TSIETAVLEVQGAQF----SRFMIDVKVLLLEKVYVVNVLGYIAYNFVIG 274

Query: 348 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
           AYSYWGPKAGYNIY+MSNADM+FGGVTIVCGIVGTI GG++LD + +TISNAFKLLSA T
Sbjct: 275 AYSYWGPKAGYNIYNMSNADMIFGGVTIVCGIVGTIGGGYVLDLINSTISNAFKLLSAVT 334

Query: 408 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS 467
           F+GAI C +AFC  ++Y FLA F +GELLVFATQAPVNYVCLH VKPSLR +SMA+STV+
Sbjct: 335 FVGAIFCFSAFCFKNMYAFLAFFAIGELLVFATQAPVNYVCLHCVKPSLRPISMAMSTVA 394

Query: 468 IHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGEN- 526
           IHIFGDVPSSPLVGVLQDH++NWRKT L LTSI F AA IWF+GIFL  +D+F+E+ E+ 
Sbjct: 395 IHIFGDVPSSPLVGVLQDHIDNWRKTALILTSILFPAAVIWFIGIFLHGVDRFDEESEHP 454

Query: 527 QISLDSKANMKPLL 540
           Q++   ++N  PLL
Sbjct: 455 QVTTADRSNTMPLL 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195245|gb|EEC77672.1| hypothetical protein OsI_16710 [Oryza sativa Indica Group]

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/507 (69%), Positives = 413/507 (81%), Gaps = 10/507 (1%)

Query: 42  EAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGI 101
           EA     S S  +   PSWFTPKRLLV+FC+INMLNYVDRGAIASNGVNGS+++C   G 
Sbjct: 89  EAGGLDASTSGAADEKPSWFTPKRLLVMFCLINMLNYVDRGAIASNGVNGSRQSCTG-GT 147

Query: 102 CTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT 161
           CTSGSGIQGDF LNNF+DGVLSSAFMVGLL+ASPIFASLAK HNPFRLIGVGL VWT AT
Sbjct: 148 CTSGSGIQGDFNLNNFEDGVLSSAFMVGLLIASPIFASLAKIHNPFRLIGVGLLVWTIAT 207

Query: 162 AGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL 221
           AGCG SFDFWSI ICRMLVGVGEASFISLAAPFIDDNAP  QKTAWL+MFYMCIPTG+A+
Sbjct: 208 AGCGCSFDFWSITICRMLVGVGEASFISLAAPFIDDNAPAAQKTAWLAMFYMCIPTGIAV 267

Query: 222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF----APAESGKAQVVAS 277
           GYVYGG+VG+ L+WR AFWGE+ILMLPF +L FVIKPL+LKGF       E G+      
Sbjct: 268 GYVYGGLVGNSLHWRAAFWGESILMLPFVILGFVIKPLELKGFNHSVKTKEYGEMLNPER 327

Query: 278 VSEGSEASNLN-DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV 336
             E  + +++  D ++E +  + S   I S G+ + L ++  F +D K LLQEKVYV+NV
Sbjct: 328 QDETKQGASIGVDGLAETLPHKFS---ISSFGK-KVLTEIKHFMKDMKELLQEKVYVINV 383

Query: 337 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI 396
           LGYI+YNFVIGAYSYWGPKAG +IY+M++AD+MFGG+TIVCGI GT+SGGFILD++ +TI
Sbjct: 384 LGYISYNFVIGAYSYWGPKAGQDIYNMASADIMFGGITIVCGIFGTLSGGFILDKIDSTI 443

Query: 397 SNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL 456
           SNAFKLLS ATFLGAI C  AFC  SLYGF+  F+VGELLVFATQAPVNYVCLH VKPSL
Sbjct: 444 SNAFKLLSGATFLGAIFCFGAFCFKSLYGFIPFFSVGELLVFATQAPVNYVCLHCVKPSL 503

Query: 457 RALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKS 516
           R LSMA+STV+IHIFGDVPSSPLVG+LQD ++NWR T L LTSI F+AA  WF+GIF++S
Sbjct: 504 RPLSMAMSTVAIHIFGDVPSSPLVGLLQDKIHNWRSTALTLTSILFIAAIFWFIGIFVRS 563

Query: 517 IDKFNEDGENQISLDSKANMKPLLEGN 543
           +D+FNE  E+ +    ++N++PLL+ N
Sbjct: 564 VDRFNEQSEHDVPAVERSNLRPLLDEN 590

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	547
TAIR|locus:2179401	484	AT5G64500 "AT5G64500" [Arabido	0.402	0.454	0.731	9.5e-163
TAIR|locus:504954889	492	AT5G65687 "AT5G65687" [Arabido	0.859	0.955	0.552	8e-140
TAIR|locus:2066045	510	AT2G22730 "AT2G22730" [Arabido	0.676	0.725	0.614	3.3e-118
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.268	0.242	0.305	2.6e-20
ZFIN|ZDB-GENE-060531-7	500	spns3 "spinster homolog 3 (Dro	0.371	0.406	0.282	1.9e-19
MGI|MGI:1920908	528	Spns1 "spinster homolog 1" [Mu	0.241	0.25	0.322	5.8e-19
RGD|1305613	528	Spns1 "spinster homolog 1 (Dro	0.241	0.25	0.322	1.5e-18
UNIPROTKB|Q9H2V7	528	SPNS1 "Protein spinster homolo	0.241	0.25	0.309	1.9e-18
UNIPROTKB|H3BMF4	573	SPNS1 "Spinster, isoform CRA_a	0.241	0.230	0.309	2.9e-18
UNIPROTKB|E2RBY9	561	SPNS1 "Uncharacterized protein	0.241	0.235	0.309	9.3e-18

TAIR|locus:2179401 AT5G64500 "AT5G64500" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 9.5e-163, Sum P(2) = 9.5e-163
 Identities = 161/220 (73%), Positives = 181/220 (82%)

Query:    52 EDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGD 111
             +D    PSWFTPK+LL +FCV+N++NY+DRGAIASNG+NGS+ +C   G C+SGSGIQGD
Sbjct:    24 KDPISEPSWFTPKKLLFVFCVVNLINYIDRGAIASNGINGSRGSCTSSGTCSSGSGIQGD 83

Query:   112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW 171
             F L+NF+DGVLSSAFMVGLLVASPIFASLAKS NPFRLIGVGLS+WT A  GCG SFDFW
Sbjct:    84 FNLSNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIGCGLSFDFW 143

Query:   172 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXS 231
             SI ICRM VGVGEASF+SLAAPFIDDNAP  QK+AWL++FYMCIPT             S
Sbjct:   144 SITICRMFVGVGEASFVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGVVGS 203

Query:   232 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK 271
              L WR AFWGEAILMLPFAVL FVIKPL LKGFAP ++GK
Sbjct:   204 VLPWRAAFWGEAILMLPFAVLGFVIKPLHLKGFAPDDTGK 243

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:504954889 AT5G65687 "AT5G65687" [Arabidopsis thaliana (taxid:3702)]

 Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
 Identities = 270/489 (55%), Positives = 340/489 (69%)

Query:    52 EDSPPTPS--WFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQ 109
             E++PP     + TP R + I C+IN++NYVDRG IASNGVNGS + CD KG+C++G+GIQ
Sbjct:    13 EEAPPATKKRFLTPGRFVTILCIINLINYVDRGVIASNGVNGSSKVCDAKGVCSAGTGIQ 72

Query:   110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD 169
             G+F L NF+DG+LSSAFMVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S++
Sbjct:    73 GEFNLTNFEDGLLSSAFMVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSYN 132

Query:   170 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXX 229
             FW IA+ RM VGVGEASFISLAAP+IDD+APV +K  WL +FYMCIP             
Sbjct:   133 FWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGYI 192

Query:   230 XSHLNWRYAFWGEAILMLPFAVLAFVIKP-LQLKGFAPAESGKAQXXXXXXXXXXXXNLN 288
              +HL WR+AF+ EAI M  F +L+F IKP  QLKGFA  +S K              ++ 
Sbjct:   193 GNHLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKGFADKDSKKPST-----------SIE 241

Query:   289 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 348
                  D   +AS+   K+  +S+  N +  F +D K L  EKV++VNVLGYI YNFVIGA
Sbjct:   242 TVAPTDA--EASQIKTKT-PKSK--NLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIGA 296

Query:   349 YSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXXXXXFILDQMGATISNAFKLLSAATF 408
             YSYWGPKAG+ IY M NADM+F                ++LD++ AT+SN FKLL+A+T 
Sbjct:   297 YSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAASTL 356

Query:   409 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI 468
             LGA  C TAF + ++Y F+ALF VGE+L+FA QAPVN+VCLH V+P+LR LSMA STV I
Sbjct:   357 LGAAFCFTAFLMKNMYAFIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVLI 416

Query:   469 HIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQI 528
             HI GDVPSSPL G +QDH+ NWRK+TL +TSI FLAA IW +GIF+ S+D+ NE  E+  
Sbjct:   417 HILGDVPSSPLYGKMQDHLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDRSNEVSEDDE 476

Query:   529 SLDSKANMK 537
               + K   K
Sbjct:   477 VEEDKLESK 485

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2066045 AT2G22730 "AT2G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 236/384 (61%), Positives = 273/384 (71%)

Query:   148 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 207
             RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISLAAPFIDDNAP  QK AW
Sbjct:   128 RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAW 187

Query:   208 LSMFYMCIPTXXXXXXXXXXXXXSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 267
             L +FYMCIP+              H +WRYAFWGEA+LM PFAVL F++KPLQLKG   +
Sbjct:   188 LGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLKG---S 244

Query:   268 ESGKAQXXXXXXXXXXXXNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL 327
             E+ K               +++ +  D  + + E S  S   + F    + F++D KVL 
Sbjct:   245 ETLKNNNRL---------QVDNEIEHDQFEVSIETSKSSYANAVF-KSFTGFAKDMKVLY 294

Query:   328 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXXXXXF 387
             +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+F                F
Sbjct:   295 KEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIFGAVTIICGIVGTLSGGF 354

Query:   388 ILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV 447
             ILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF +GELLVFATQAPVNYV
Sbjct:   355 ILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYV 414

Query:   448 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI 507
             CLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++QDH+N+WRKTTL LTSI FLAA I
Sbjct:   415 CLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHINSWRKTTLILTSILFLAAAI 474

Query:   508 WFVG-IFLKSIDKFNEDGENQISL 530
             WF+G I L S    +E    QI L
Sbjct:   475 WFIGKINLNSFYSNDESFLVQIKL 498

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 171 (65.3 bits), Expect = 2.6e-20, Sum P(3) = 2.6e-20
 Identities = 47/154 (30%), Positives = 76/154 (49%)

Query:   108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
             ++ DF + N   G+L + F++  +V +PIF  L   ++   ++ VG+ +W+  T   GS 
Sbjct:   141 VRNDFDIGNDSAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTL-LGSF 199

Query:   168 F-DF-WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXX 225
                F W IA  R LVG+GEAS+ ++A   I D      ++  L++FY  IP         
Sbjct:   200 MKQFGWFIAF-RALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIV 258

Query:   226 XXXXXSHL--NWRYAFWGEAILMLPFAVLAFVIK 257
                  +HL  +WR+A     IL +    L  +IK
Sbjct:   259 GSKT-AHLANDWRWALRVTPILGIVAVFLILLIK 291

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

ZFIN|ZDB-GENE-060531-7 spns3 "spinster homolog 3 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 176 (67.0 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
 Identities = 68/241 (28%), Positives = 105/241 (43%)

Query:    35 HRPPPLAEAEMATR----SLSEDSP---P-TPSW--FTPKRLLV---IFCVINMLNYVDR 81
             HRP P      +T     S+S + P   P TP     + +R  +   + C IN+LNY+DR
Sbjct:     6 HRPKPRLSLRSSTTIRYGSMSSEHPDGDPSTPQTTSISQRRSYIAVAVLCYINLLNYMDR 65

Query:    82 GAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA 141
               IA              G+      IQ  F +++   G+L + F+   +  +P+F  L 
Sbjct:    66 YTIA--------------GVLLR---IQKFFFISDSTSGLLQTVFICSFMFLAPVFGYLG 108

Query:   142 KSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDD 197
               ++   ++ VGL +W   T G  SSF     FW +   R LVG GEAS+ ++A   I D
Sbjct:   109 DRYDRKLIMIVGLVMWIVTTLG--SSFVRKSHFWVLVATRALVGTGEASYSTIAPTIIGD 166

Query:   198 NAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXSHL-NWRYAFW-GEAILMLPFAVLAFV 255
                  ++T  +S FY+ IP                  +WR+A     A+  L   +L F+
Sbjct:   167 LFAGSKRTLMISFFYIFIPVGSGLGYIIGATVADATGDWRWALRVSPALGGLGLLLLVFL 226

Query:   256 I 256
             I
Sbjct:   227 I 227

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

MGI|MGI:1920908 Spns1 "spinster homolog 1" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 5.8e-19, Sum P(3) = 5.8e-19
 Identities = 50/155 (32%), Positives = 80/155 (51%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++V+ C IN+LNY+DR  +A              G+ T    I+  F + +   G++ + 
Sbjct:    61 IVVVLCYINLLNYMDRFTVA--------------GVLTD---IEQFFNIGDGSTGLIQTV 103

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPREHFWLLLLTRGLVG 161

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   162 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1305613 Spns1 "spinster homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
 Identities = 50/155 (32%), Positives = 80/155 (51%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++V+ C IN+LNY+DR  +A              G+ T    I+  F + +   G++ + 
Sbjct:    61 IVVVLCYINLLNYMDRFTVA--------------GVLTD---IEQFFNIGDGSTGLIQTV 103

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPREHFWLLLLTRGLVG 161

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   162 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q9H2V7 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++ + C IN+LNY+DR  +A              G+      I+  F + +   G++ + 
Sbjct:    61 IVAVLCYINLLNYMDRFTVA--------------GVLPD---IEQFFNIGDSSSGLIQTV 103

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVG 161

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   162 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|H3BMF4 SPNS1 "Spinster, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 2.9e-18, Sum P(3) = 2.9e-18
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++ + C IN+LNY+DR  +A              G+      I+  F + +   G++ + 
Sbjct:   106 IVAVLCYINLLNYMDRFTVA--------------GVLPD---IEQFFNIGDSSSGLIQTV 148

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   149 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVG 206

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   207 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 241

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2RBY9 SPNS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 9.3e-18, Sum P(4) = 9.3e-18
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++ + C IN+LNY+DR  +A              G+      I+  F + +   G++ + 
Sbjct:    94 IVAVLCYINLLNYMDRFTVA--------------GVLPD---IEQFFDIGDSSSGLIQTV 136

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   137 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPRERFWLLLLTRGLVG 194

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   195 VGEASYSTIAPTLIADLFVADQRSRMLSVFYFAIP 229

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4IKF6	SPNS3_ARATH	No assigned EC number	0.6429	0.9067	0.9725	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	547
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-20
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-19
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-12
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-10
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-09
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	3e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-07
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	1e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-05
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	2e-04
PRK03545	390	PRK03545, PRK03545, putative arabinose transporter	0.001
TIGR00805	633	TIGR00805, oat, sodium-independent organic anion t	0.002
COG0477	338	COG0477, ProP, Permeases of the major facilitator	0.002
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	0.003
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	0.003

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 17/193 (8%)

Query: 67  LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAF 126
           L++  +   L+ +DRG ++                      +  D  L+  Q G++ SAF
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPL-----------------LAEDLGLSASQAGLIVSAF 43

Query: 127 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 186
            +G  + S +   L+      R++ +GL ++   +     +   W + + R L+G+G  +
Sbjct: 44  SLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGA 103

Query: 187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 246
               AA  I +  P  ++   L +F      G  LG + GG++   L WR+ F   AIL 
Sbjct: 104 LYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163

Query: 247 LPFAVLAFVIKPL 259
           L  A+L   +  L
Sbjct: 164 LLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 67/364 (18%), Positives = 124/364 (34%), Gaps = 47/364 (12%)

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           +  D  ++  + G+L +AF +G  +A P+   L+      R++ +GL ++         +
Sbjct: 23  LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA 82

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
              W + + R+L G+G  +    AA  I D  P  ++   L +       G ALG + GG
Sbjct: 83  SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL 287
           ++ S   WR AF   AIL L  AVLA ++ P                             
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLP----------------------------R 174

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
               S+         +         L                   +  +L  + + F   
Sbjct: 175 PPPESKRPKPAEEAPAPLVPAWKLLLRD---------------PVLWLLLALLLFGFAFF 219

Query: 348 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA 406
           A   + P     +  +S     +  G+  + G +G +  G + D++G        LL   
Sbjct: 220 ALLTYLPLYQ-EVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLI 278

Query: 407 TFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTV 466
                +  L +   SSL+  +AL  +G          +N +         R  +  +   
Sbjct: 279 LAALGL-ALLSLTESSLWLLVALLLLG-FGAGLVFPALNALVSDLAPKEERGTASGLYNT 336

Query: 467 SIHI 470
           +  +
Sbjct: 337 AGSL 340

Length = 346

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML 179
           G+L + + +G L+ SP+   L        ++ VGL ++  +TA    S +   + I R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF 239
            G G A  +   A  I D  P  ++   L +    I  G  LG   GGV+   L WR  F
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120

Query: 240 WGEAILML-PFAVLAFVIKP 258
              AIL L  F +LAF++  
Sbjct: 121 LFLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 68/354 (19%), Positives = 128/354 (36%), Gaps = 40/354 (11%)

Query: 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG 165
             I  ++ L+  Q G L SA ++G+   +  F  LA      R++   + +++  T  C 
Sbjct: 41  PAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCA 100

Query: 166 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY 225
            + +   + I R L G+G    +      + + AP   +   + + +   P G A+G   
Sbjct: 101 LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL 160

Query: 226 GGVVGSHLNWRYAFW-GEAILMLPFAVLAFV----IKPLQLKGFAPAESGKAQVVASVSE 280
            G +     WR  F+ G    +L   +L       I  L  K          + + +   
Sbjct: 161 AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-----PETVRRIVNAIA 215

Query: 281 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE---KVYVVNVL 337
               +     + E  + Q ++RS+                   K L Q    ++ V+  L
Sbjct: 216 PQMQAEAQSALPEQKATQGTKRSVF------------------KALFQGKTARITVLLWL 257

Query: 338 GYIAYNFVIGAYSYWGPK----AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMG 393
            Y      +   + W PK     G++     +     G +    G++G+I  G++ D++G
Sbjct: 258 LYFMLLVGVYFLTNWLPKLMVELGFS----LSLAATGGALFNFGGVIGSIIFGWLADRLG 313

Query: 394 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA-LFTVGELLVFATQAPVNY 446
             ++    LL A   +   S L +  L  L G +A  F  G          + Y
Sbjct: 314 PRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY 367

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 73/402 (18%), Positives = 138/402 (34%), Gaps = 70/402 (17%)

Query: 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML 179
           G L +A+ +G+ + +P+ A L       RL+   L+++  +      +  F  + + R L
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110

Query: 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF 239
            G+    F S+AA       P  ++   L++ +  +     LG   G  +G    WR  F
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170

Query: 240 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA 299
              A+L    A+LA +   L  K   P+E   +                           
Sbjct: 171 LAIAVL----ALLALL---LLWKLLPPSEISGS--------------------------- 196

Query: 300 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 359
                           L    +   VLL     +   L    +      Y+Y  P    +
Sbjct: 197 --------LPGPLRTLLRLLRR-PGVLL---GLLATFLFMTGHF---ALYTYIRPFLE-S 240

Query: 360 IYHMSNAD-----MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 414
           +   S +      + FG    + G +G + GG + D+         + L AA  L A++ 
Sbjct: 241 VAGFSVSAVSLVLLAFG----IAGFIGNLLGGRLADR------GPRRALIAALLLLALA- 289

Query: 415 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS-VKPSLRALSMAISTVSIHIFGD 473
           L A   +     LAL  +       + A        + + P    L+ +++  + ++ G 
Sbjct: 290 LLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNL-GI 348

Query: 474 VPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLK 515
              + L G++ D +      T  + +   L A +  +    K
Sbjct: 349 ALGAALGGLVLDALGYA--ATGWVGAALLLLALLLALLSARK 388

Length = 394

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 59/280 (21%), Positives = 97/280 (34%), Gaps = 54/280 (19%)

Query: 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV--------- 228
           +L G+G     +L   +IDDN        +L + +     G A+G++ G           
Sbjct: 147 LLRGIGATPIFTLGISYIDDNVKSKNSPLYLGILFTMAMFGPAIGFLLGSFCLRLYVDFG 206

Query: 229 ----VGSHLN-----WRYAFW----GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV 275
                   +      W  A+W        L L  + + F   P  L     A+     + 
Sbjct: 207 RVPTEDVIITPTDPRWVGAWWLGFLVCGGLAL-LSAIPFFFFPKTLPK---AQGRLESLD 262

Query: 276 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN 335
            S  +  + +       E  S +++   +K             F +  K LL    +++ 
Sbjct: 263 LSRPKAKDETR--KQAEEPKSGKSAPDFLK------------DFPKTLKRLLTNPTFMLV 308

Query: 336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMS--NADMMFGGVTIVCGIVGTISGGFILDQMG 393
           VL  +  + VI  YS + PK     Y +S   A+ + G V +    VG + GG I+    
Sbjct: 309 VLAQVFESSVIAGYSTFLPKYLETQYGLSASYANFLIGVVNLPAAAVGILLGGLII---- 364

Query: 394 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG 433
                 FKL    T  G         L SL  +L  F +G
Sbjct: 365 ----KKFKL----TARGMAKFAIFVILVSLAFYLPYFFIG 396

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 1/151 (0%)

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA-KSHNPFRLIGVGLSVWTFATAGCGS 166
           +Q    L+  + G+L S F +G ++ + +   L+ +      L+ +GL +          
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261

Query: 167 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG 226
           +     + +  +L+G G             + AP   +     +F      G ALG +  
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321

Query: 227 GVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257
           G++     +   F   A L L  A+L  ++ 
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 71/358 (19%), Positives = 122/358 (34%), Gaps = 71/358 (19%)

Query: 76  LNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASP 135
           +NY+DR  ++                  +   +Q D  L+  Q G + SAF  G +V   
Sbjct: 5   INYLDRANLSF-----------------AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQF 47

Query: 136 IFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS-----L 190
               L       + + V + +W   T     +  + S+ I R+L+G  EA F       +
Sbjct: 48  PGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIV 107

Query: 191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL--MLP 248
           A+ F     P  ++   +S+F      G  +G    G +  H +W++AF  E +L  +  
Sbjct: 108 ASWF-----PASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162

Query: 249 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG 308
              L F+  P Q   +   E     V   ++E                      + K   
Sbjct: 163 VLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGP---------------STPKK-- 205

Query: 309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP-----KAGYNIYHM 363
                       Q  ++L   +V+ +  LG    N  +G +  W P     + G +I   
Sbjct: 206 -----------YQIKELLKDRRVWGL-ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA 253

Query: 364 SNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS 421
                    +  + G +G I GG + D     +    K L  A     I+ L    L 
Sbjct: 254 G----FMASLPGIVGFIGMILGGRLSD----LLLRRGKSLVFARKTAIIAGLVLSLLM 303

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 7/176 (3%)

Query: 336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA 394
            L +   +F       + P     +  +S A+  +   +  + GI+G + GG + D++G 
Sbjct: 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG- 239

Query: 395 TISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP 454
                  LL     L A+  L      SL   L    +    +      +  +      P
Sbjct: 240 ---RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296

Query: 455 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 510
             R  +  +      + G      L G+L D    +    L L ++  LAA +  +
Sbjct: 297 EARGTASGLFNTFGSLGG-ALGPLLAGLLLDTG-GYGGVFLILAALALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 4/162 (2%)

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           I GD   +  Q   + +++M+   ++ P+   LAK     RL  +    +T  +  CG +
Sbjct: 28  IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA 87

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
            +   + I R++ G G    I L+   + +  P  ++   ++++ + +    ALG   GG
Sbjct: 88  PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGG 147

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES 269
            +  + +WR+ F       +P  ++  V+    L    PA S
Sbjct: 148 WIIENYHWRWIFLIN----VPIGIIVVVVAFFILPRDKPAAS 185

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 164 CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 223
              +++F  + I R+ +    A F S+ A      AP  +K   LS+    + TG AL  
Sbjct: 91  SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSL----LATGTALAM 146

Query: 224 VYG----GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259
           V G     V+G +L WR  F   AI       L  +IK L
Sbjct: 147 VLGLPLGRVIGQYLGWRTTFL--AIGGGALITLLLLIKLL 184

Length = 390

>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 419 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP 478
           C +SL  FL LF     + F T  P+  V L  V P  R+L++ +  + + +FG +P+  
Sbjct: 514 CATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEERSLAIGLQWLCMRVFGTIPAPI 573

Query: 479 LVGVLQDH 486
           L G+L D 
Sbjct: 574 LFGLLIDV 581

The Organo Anion Transporter (OAT) Family (TC 2.A.60)Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. Length = 633

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 6/167 (3%)

Query: 117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG--SSFDFWSIA 174
              G+L SAF +G  + S +   L   +   +++ +GL ++   T       +     + 
Sbjct: 39  LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLL 98

Query: 175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM--CIPTGVALGYVYGGVVGSH 232
           I R+L G+G    + +A+  + +  P   +               G+ALG +  G++   
Sbjct: 99  ILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158

Query: 233 L--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS 277
           L   WR AF   A+L L   +L  ++  L      P   G A +   
Sbjct: 159 LLWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELG 205

Length = 338

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 56/298 (18%), Positives = 108/298 (36%), Gaps = 48/298 (16%)

Query: 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS 166
            +  D  L+  Q G+L SAF +   V+  +   L+   NP   +  GL +        G 
Sbjct: 54  ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF 113

Query: 167 SFDFWSIAICRMLVGV-----GEASFISLAAPFIDDNAPVPQKTAWLSMFYMC--IPTGV 219
           S   +  A+  +L G            ++   F        ++  W S++     I   +
Sbjct: 114 SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWF-----SRKERGTWWSIWNTSHNIGGAL 168

Query: 220 ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI---KPLQLKGFAPAESGKAQVVA 276
           A           H  WR AF+   I+ +  A++   +   +P Q +G  P E  +     
Sbjct: 169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP-QSEGLPPIEEYRG---- 223

Query: 277 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV 336
                 +   + +   E+    A +  +K +      N+L        + L   + + NV
Sbjct: 224 ------DPLEIYEEEKENEGLTAWQIFVKYV----LKNKL--------IWL---LALANV 262

Query: 337 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI--VCGIVGTISGGFILDQM 392
             Y+    V    + WGP     +   S     +  +++  V G+ GT+  G++ D++
Sbjct: 263 FVYV----VRYGINDWGPLYLSEVKGFSLVKANW-AISLFEVAGLPGTLLAGWLSDKL 315

Length = 448

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK--SHNPFRLIGVGLSVWTFATAGCGSS 167
           G    +    G++ S F VG L+ S     L          LIG  L V        G +
Sbjct: 39  GACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFV--IGALLQGFA 96

Query: 168 FD--FWSIAICRMLVGVGEASFISLAAP-FIDDNAPVPQKTAWLSMFYMCIPTGVALGYV 224
               F+ + + R++VG+G    IS+  P +I + AP   + A  S++ + I  G+ +  +
Sbjct: 97  KGKSFYMLIVGRVIVGLG-VGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAI 155

Query: 225 YG---GVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256
            G       +   WR     + +  +   +    +
Sbjct: 156 IGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFL 190

Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	547
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK10504	471	putative transporter; Provisional	100.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
TIGR00805	633	oat sodium-independent organic anion transporter.	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.98
PRK12382	392	putative transporter; Provisional	99.98
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.98
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.98
PRK03633	381	putative MFS family transporter protein; Provision	99.98
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.97
PRK10054	395	putative transporter; Provisional	99.97
KOG0569	485	consensus Permease of the major facilitator superf	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.97
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.97
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
PRK11010	491	ampG muropeptide transporter; Validated	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.96
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.96
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.96
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.95
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.95
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.95
TIGR00901	356	2A0125 AmpG-related permease.	99.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
PRK11902	402	ampG muropeptide transporter; Reviewed	99.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.94
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.94
PTZ00207	591	hypothetical protein; Provisional	99.94
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.93
KOG3626	735	consensus Organic anion transporter [Secondary met	99.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.92
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.9
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.89
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.89
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.89
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.88
PRK09669	444	putative symporter YagG; Provisional	99.88
PRK10429	473	melibiose:sodium symporter; Provisional	99.87
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.86
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.86
KOG2563	480	consensus Permease of the major facilitator superf	99.85
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.84
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.84
PRK09848	448	glucuronide transporter; Provisional	99.84
PF13347	428	MFS_2: MFS/sugar transport protein	99.84
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.82
PRK11462	460	putative transporter; Provisional	99.8
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.8
COG2211	467	MelB Na+/melibiose symporter and related transport	99.74
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.72
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.69
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.65
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.63
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.56
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.56
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.55
PRK15011	393	sugar efflux transporter B; Provisional	99.51
PRK10642	490	proline/glycine betaine transporter; Provisional	99.49
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.49
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.49
PRK09528	420	lacY galactoside permease; Reviewed	99.48
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.47
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.46
PRK05122	399	major facilitator superfamily transporter; Provisi	99.45
PRK10489	417	enterobactin exporter EntS; Provisional	99.43
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.43
PRK12382	392	putative transporter; Provisional	99.43
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.42
PRK09874	408	drug efflux system protein MdtG; Provisional	99.41
PRK03893	496	putative sialic acid transporter; Provisional	99.41
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.4
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.39
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.39
PRK03699	394	putative transporter; Provisional	99.38
TIGR00893	399	2A0114 d-galactonate transporter.	99.38
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.38
PRK03545	390	putative arabinose transporter; Provisional	99.36
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.34
PRK09705	393	cynX putative cyanate transporter; Provisional	99.32
PRK03633	381	putative MFS family transporter protein; Provision	99.32
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.32
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.31
TIGR00891	405	2A0112 putative sialic acid transporter.	99.29
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.27
KOG3762	618	consensus Predicted transporter [General function	99.26
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.24
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.23
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.22
PRK11663	434	regulatory protein UhpC; Provisional	99.22
PRK11010	491	ampG muropeptide transporter; Validated	99.2
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.2
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.2
PRK09952	438	shikimate transporter; Provisional	99.2
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.19
PRK10054	395	putative transporter; Provisional	99.19
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.19
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.17
PRK15075	434	citrate-proton symporter; Provisional	99.16
PLN00028	476	nitrate transmembrane transporter; Provisional	99.13
TIGR00900	365	2A0121 H+ Antiporter protein.	99.12
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.12
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.11
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.11
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.11
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.11
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.1
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.09
PRK10504	471	putative transporter; Provisional	99.08
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.08
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.07
PRK11902	402	ampG muropeptide transporter; Reviewed	99.07
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.07
PRK12307	426	putative sialic acid transporter; Provisional	99.06
TIGR00898	505	2A0119 cation transport protein.	99.05
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.05
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.05
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.05
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.05
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.05
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.04
TIGR00895	398	2A0115 benzoate transport.	99.04
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.04
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.03
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.03
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.02
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.02
PRK10091	382	MFS transport protein AraJ; Provisional	99.02
KOG0569	485	consensus Permease of the major facilitator superf	99.01
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.01
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.0
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.97
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.94
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.93
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.92
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.9
PRK11043	401	putative transporter; Provisional	98.9
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.89
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.88
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.85
KOG2615	451	consensus Permease of the major facilitator superf	98.84
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.84
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.83
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.82
KOG3810	433	consensus Micronutrient transporters (folate trans	98.81
COG0477	338	ProP Permeases of the major facilitator superfamil	98.81
PRK10133	438	L-fucose transporter; Provisional	98.8
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.79
KOG0637	498	consensus Sucrose transporter and related proteins	98.79
PF13347	428	MFS_2: MFS/sugar transport protein	98.79
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.78
KOG3762	618	consensus Predicted transporter [General function	98.78
PRK09848	448	glucuronide transporter; Provisional	98.78
TIGR00901	356	2A0125 AmpG-related permease.	98.77
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.75
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.74
PRK10429	473	melibiose:sodium symporter; Provisional	98.72
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.71
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.69
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.68
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.68
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.68
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.64
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.64
PRK09669	444	putative symporter YagG; Provisional	98.6
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.59
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.58
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.57
TIGR00805	633	oat sodium-independent organic anion transporter.	98.54
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.46
PTZ00207	591	hypothetical protein; Provisional	98.46
KOG2532	466	consensus Permease of the major facilitator superf	98.44
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.44
COG2211	467	MelB Na+/melibiose symporter and related transport	98.37
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.35
PRK11462	460	putative transporter; Provisional	98.26
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.25
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.21
KOG0254	513	consensus Predicted transporter (major facilitator	98.19
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.19
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.14
KOG2533	495	consensus Permease of the major facilitator superf	98.14
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.04
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.03
COG3202	509	ATP/ADP translocase [Energy production and convers	98.01
KOG3880	409	consensus Predicted small molecule transporter inv	97.95
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.92
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.86
PF12832	77	MFS_1_like: MFS_1 like family	97.77
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.51
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.48
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.47
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.19
PRK03612	521	spermidine synthase; Provisional	97.18
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.08
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.89
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.56
KOG2563	480	consensus Permease of the major facilitator superf	96.37
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.2
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.09
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	95.99
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.98
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.96
KOG0637	498	consensus Sucrose transporter and related proteins	95.94
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.8
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.79
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.78
PF12832	77	MFS_1_like: MFS_1 like family	95.59
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.37
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.64
COG0477	338	ProP Permeases of the major facilitator superfamil	93.55
KOG3626	735	consensus Organic anion transporter [Secondary met	93.54
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	91.95
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	90.99
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	90.65
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	90.53
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	89.77
PRK03612	521	spermidine synthase; Provisional	89.31
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	88.35
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	88.2
KOG3880	409	consensus Predicted small molecule transporter inv	87.58
KOG3097	390	consensus Predicted membrane protein [Function unk	87.15
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	84.42
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	81.59
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	80.26

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.7e-42  Score=311.19  Aligned_cols=399  Identities=17%  Similarity=0.165  Sum_probs=323.3

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  142 (547)
                      +++++..+++++...|+.|.+++.                 +.|.+.+|.++|.+|+|++.+++.+.|+++.+..|.++|
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~-----------------a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD   89 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNL-----------------AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSD   89 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhh-----------------ccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            356888889999999999999997                 449999999999999999999999999999999999999


Q ss_pred             hcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhh
Q 008957          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG  222 (547)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  222 (547)
                      |.+.|+.+.+++++.++.+++.+++++.+.+.++.+++|.++|..+|.+...++.|++++|||+..++++.+.++|..+.
T Consensus        90 r~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~  169 (448)
T COG2271          90 RSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALA  169 (448)
T ss_pred             cCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhH--HhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchh
Q 008957          223 YVYG--GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQAS  300 (547)
Q Consensus       223 ~~l~--~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (547)
                      |++.  +++..+.+||..|++.+++++++++..++..+++|....-+.-++...+                  ..+.. +
T Consensus       170 ~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d------------------~~e~~-~  230 (448)
T COG2271         170 PLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGD------------------PLEIY-E  230 (448)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcC------------------chhhh-h
Confidence            9999  8999888999999999999999999999998876655443322221100                  00000 0


Q ss_pred             hhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhccccc
Q 008957          301 ERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGI  379 (547)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~  379 (547)
                      ++++++ .       ......-.+.+++||.+|.+.++.++....-+++..|.|.|+.+..+.+.... ...+++-.+++
T Consensus       231 ~~~~~~-~-------ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl  302 (448)
T COG2271         231 EEKENE-G-------LTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGL  302 (448)
T ss_pred             hhccCC-C-------ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence            000000 0       00000234678999999999999999999999999999999999999997555 44567779999


Q ss_pred             ccceeeeeeeeccc--ccchhHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhcCccceeeeecccCCc
Q 008957          380 VGTISGGFILDQMG--ATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS  455 (547)
Q Consensus       380 ~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (547)
                      +|.+++||++||+-  ||.    ...++..+...++.+.....+  +.+...+++++.|++..+-...+.....|..|++
T Consensus       303 ~G~Ll~GwlSDklfkgrR~----p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~  378 (448)
T COG2271         303 PGTLLAGWLSDKLFKGRRG----PMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKK  378 (448)
T ss_pred             HHHHHHHHHHHHhcccccc----hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHh
Confidence            99999999999975  442    233333333333333333333  3466777777788887777666677778888889


Q ss_pred             chhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          456 LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       456 ~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (547)
                      ..|++.|+...+.+++|.+.+....|++.|.+| |...|++..+.++++.++++.
T Consensus       379 AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         379 AAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             hccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHHHHHHHHHHHHHHHHH
Confidence            999999999999999899999999999999865 888888888777776666554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.3e-39  Score=299.88  Aligned_cols=350  Identities=19%  Similarity=0.220  Sum_probs=288.0

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      .+|++.+|+|+|..+.|++.|.|.+++.++.++...+.||+.||++++..+.++.++++++++++||+.++++|++.|+.
T Consensus        35 LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a  114 (394)
T COG2814          35 LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLA  114 (394)
T ss_pred             chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      .|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+.+|||+.|++.+.++++..+..+..+|  ++.
T Consensus       115 ~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~  192 (394)
T COG2814         115 HGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE  192 (394)
T ss_pred             HHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998888  111


Q ss_pred             CCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHH
Q 008957          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                        .+++.+..                                              ..+...++|+|..+...+..++..
T Consensus       193 --~~~~~~~~----------------------------------------------~~~~~~~l~~p~v~~~l~~t~l~~  224 (394)
T COG2814         193 --ISGSLPGP----------------------------------------------LRTLLRLLRRPGVLLGLLATFLFM  224 (394)
T ss_pred             --CCCCCCcc----------------------------------------------hhHHHHHhcCchHHHHHHHHHHHH
Confidence              11111000                                              022456789999999999999999


Q ss_pred             HHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH-HHHHHHhh
Q 008957          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CLTAFCLS  421 (547)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  421 (547)
                      ...+...+|...++++..+.+.... ....+++++.++|++++|++.|| +.+     +.+.....+.... ..+....+
T Consensus       225 ~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-----~~l~~~~~l~a~~~l~l~~~~~  298 (394)
T COG2814         225 TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR-----RALIAALLLLALALLALTFTGA  298 (394)
T ss_pred             cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch-----hHHHHHHHHHHHHHHHHHHhcc
Confidence            9888888888889999998886554 55577889999999999999999 655     4554443333333 33444445


Q ss_pred             hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHH
Q 008957          422 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  501 (547)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  501 (547)
                      +.+...+..++.++..............+ ..|+.+..+.++.....|+ |..+|..++|.+.|+.| +....++.+...
T Consensus       299 ~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nl-gia~GA~lGG~v~~~~g-~~~~~~~~a~l~  375 (394)
T COG2814         299 SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNL-GIALGAALGGLVLDALG-YAATGWVGAALL  375 (394)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc-hHHHHHHHHHHH
Confidence            55555555555555554444444444444 4578999999999999998 99999999999999955 778888888777


Q ss_pred             HHHHHHHHHHH
Q 008957          502 FLAAGIWFVGI  512 (547)
Q Consensus       502 ~~~~~~~~~~~  512 (547)
                      +++.++.+...
T Consensus       376 ~~a~~~~~~~~  386 (394)
T COG2814         376 LLALLLALLSA  386 (394)
T ss_pred             HHHHHHHHHHH
Confidence            77666665433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=8e-40  Score=321.35  Aligned_cols=398  Identities=16%  Similarity=0.211  Sum_probs=283.3

Q ss_pred             CchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhh
Q 008957           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (547)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~  141 (547)
                      .+|+.+.++++.++++++|+.+++.+                 .|.+.+|+|++..+.|++.+++.+++.+++++.|+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~   67 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFA-----------------GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIML   67 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHH-----------------HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            35678888999999999999999873                 3889999999999999999999999999999999999


Q ss_pred             hhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhh
Q 008957          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (547)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (547)
                      ||+|||+++..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++
T Consensus        68 dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~  147 (412)
T TIGR02332        68 AIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL  147 (412)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHhhcC------CCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccccccc
Q 008957          222 GYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI  295 (547)
Q Consensus       222 g~~l~~~l~~------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (547)
                      ++++++++.+      ..|||+.|++.++++++..++.+++.||++...+...+++....++   ..+.....      .
T Consensus       148 ~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~---~~~~~~~~------~  218 (412)
T TIGR02332       148 GLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKE---MIDNDQLT------L  218 (412)
T ss_pred             HHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHH---HHHhcccc------c
Confidence            9999988763      4699999999999988877777777777553211000000000000   00000000      0


Q ss_pred             ccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEee-ccCchhh-Hhhhhh
Q 008957          296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-YHMSNAD-MMFGGV  373 (547)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~-~~~~~~  373 (547)
                      ++ .+....+. .     .   .....++.++ ++.++...+..++.....+.+.+|+|.++++. .+.+... ..+...
T Consensus       219 ~~-~~~~~~~~-~-----~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~  287 (412)
T TIGR02332       219 EQ-PEGAFAHA-A-----M---PQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAI  287 (412)
T ss_pred             cc-cccccccc-c-----c---cHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhH
Confidence            00 00000000 0     0   0012234444 47778878878888888888999999999873 3444333 345567


Q ss_pred             hcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccC
Q 008957          374 TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK  453 (547)
Q Consensus       374 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (547)
                      ..++.+++.++.|+++||+++|+    ........+.....++.....+.......+++..++.....+.......+..|
T Consensus       288 ~~l~~~~g~l~~g~l~dr~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  363 (412)
T TIGR02332       288 PQFCTIFGMIWWSRHSDRLKERK----HHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSIS  363 (412)
T ss_pred             HHHHHHHHHHHHHHHhcccCccH----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccc
Confidence            78889999999999999999773    22222222222222222222222222222222222222222222233345577


Q ss_pred             CcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHH
Q 008957          454 PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  501 (547)
Q Consensus       454 ~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  501 (547)
                      ++.|+++.|+.+...++ |.+++|.+.|.+.|..|+|...+.+.+++.
T Consensus       364 ~~~~~~a~g~~~~~~~~-g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       364 LQARAIAIAVINATGNI-GSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             hHHHHHHHHHHHHhhhh-hhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            89999999999988887 889999999999998888888877666543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-39  Score=298.74  Aligned_cols=378  Identities=37%  Similarity=0.607  Sum_probs=300.9

Q ss_pred             CCCCchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhh
Q 008957           59 SWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFA  138 (547)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g  138 (547)
                      .++..++.+.++++...+++.|+..+..                 ..+.+++.||++++..|++.+.+.+.+.++++++|
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iag-----------------v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~g   89 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAG-----------------VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFG   89 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhh-----------------hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHH
Confidence            3445567889999999999999999875                 33899999999999999999999999999999999


Q ss_pred             hhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhh
Q 008957          139 SLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG  218 (547)
Q Consensus       139 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  218 (547)
                      +++|||.||+++.+|..+|.++.++++++..||+++++|.+.|+|.+...|+++.+++|.+|..+|++++++++.+.++|
T Consensus        90 yLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvG  169 (493)
T KOG1330|consen   90 YLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVG  169 (493)
T ss_pred             HHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHhhcCCCC-chhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccccccccc
Q 008957          219 VALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD  297 (547)
Q Consensus       219 ~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (547)
                      ..+|.+.+..+.+..+ |||.|++.++++++++++.+++.+|+++...++.+.+..                       .
T Consensus       170 sglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~-----------------------~  226 (493)
T KOG1330|consen  170 SGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENK-----------------------M  226 (493)
T ss_pred             cceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCc-----------------------C
Confidence            9999999999988766 999999999999999999999988755431111110000                       0


Q ss_pred             chhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccC----chhhHhhhhh
Q 008957          298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM----SNADMMFGGV  373 (547)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~  373 (547)
                                     .....+.+++.+.+.+++.+....+.+....+....+..|.|.+....+..    +.....+..+
T Consensus       227 ---------------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~v  291 (493)
T KOG1330|consen  227 ---------------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGV  291 (493)
T ss_pred             ---------------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhH
Confidence                           011223456777888888888888888888888888888888865543322    2344566778


Q ss_pred             hcccccccceeeeeeeecccccchhH-----HHHHH-HHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHhhcCccce
Q 008957          374 TIVCGIVGTISGGFILDQMGATISNA-----FKLLS-AATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVN  445 (547)
Q Consensus       374 ~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (547)
                      ..+++.+|.+++|.++||+.++.++.     ..+.. .+..+++....+...  ..+.+..++++++.-......+++..
T Consensus       292 t~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~  371 (493)
T KOG1330|consen  292 TCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNN  371 (493)
T ss_pred             HHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccccc
Confidence            88999999999999999976643331     11111 111222222222211  23445555555555555667777888


Q ss_pred             eeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhH
Q 008957          446 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  491 (547)
Q Consensus       446 ~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~  491 (547)
                      .+..+.+||+.|.++.++...+..++|.+-+|.+.|.+.|+.-+|+
T Consensus       372 ~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  372 PIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             ceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            8899999999999999999999999999988989999999776565

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=5.2e-40  Score=328.71  Aligned_cols=398  Identities=15%  Similarity=0.119  Sum_probs=287.9

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  142 (547)
                      .+.++..+++.++..+.|+.+++.                 +.|.+.+|+|++..+.|++.+++.+++.+++++.|+++|
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~-----------------~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D   89 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKA-----------------AQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD   89 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhh-----------------hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh
Confidence            456778888999999999999986                 449999999999999999999999999999999999999


Q ss_pred             hcCCceehHHHHHHHHHHHHhhhc-----cccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhh
Q 008957          143 SHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT  217 (547)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~-----a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  217 (547)
                      |+|||+++.+++++++++.++.++     ++|++.+++.|+++|++.+...|...++++||+|+++||++++++..+.++
T Consensus        90 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l  169 (467)
T PRK09556         90 GKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL  169 (467)
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence            999999999888888777766554     689999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHhhcCCC---CchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccc
Q 008957          218 GVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  294 (547)
Q Consensus       218 G~~~g~~l~~~l~~~~---gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (547)
                      |.+++++++.++....   +||..|.+.++++++.+++.+++.++.+......++      ++.   .+. .. .++ + 
T Consensus       170 G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~------~~~---~~~-~~-~~~-~-  236 (467)
T PRK09556        170 GGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA------EEI---FGE-PI-SEE-D-  236 (467)
T ss_pred             hhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh------hhc---ccC-cc-chh-h-
Confidence            9999999887766542   699999999988888777777766553321110000      000   000 00 000 0 


Q ss_pred             cccchhhhhcccccchhhhhhhhhhhhh-hHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhh
Q 008957          295 ISDQASERSIKSIGESRFLNQLSQFSQD-TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGG  372 (547)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~  372 (547)
                          .. .+.++  .        +..+. .+..+++|.+|...+..++......++.+|.|.|+++.++.+.... ....
T Consensus       237 ----~~-~~~~~--~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~  301 (467)
T PRK09556        237 ----KE-TESTD--M--------TKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFT  301 (467)
T ss_pred             ----hc-ccccc--C--------cHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence                00 00000  0        00011 2336789999999888888888888889999999988888876443 4455


Q ss_pred             hhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH-HH-HHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeec
Q 008957          373 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CL-TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLH  450 (547)
Q Consensus       373 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (547)
                      ...++.+++.+++|+++||+++|+     .+.......... .+ .....++.+...+..++.+++.............+
T Consensus       302 ~~~~~~~ig~~~~G~lsDr~g~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  376 (467)
T PRK09556        302 LFEIGALVGSLLWGWLSDLANGRR-----ALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVG  376 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCc-----hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            667889999999999999999883     332222111111 11 11122233333334444443332222222234557


Q ss_pred             ccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc------------ccchhHHHHHHHHHHHHHHHHHHHHH
Q 008957          451 SVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD------------HVNNWRKTTLALTSIFFLAAGIWFVG  511 (547)
Q Consensus       451 ~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (547)
                      ..|++.+|++.|+.+...++.|.+++|.+.|++.|            ..+ |+..|.+..++.+++.+..+..
T Consensus       377 ~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        377 FVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             hcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999988887576889999999999            444 8888888877777766655543

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=6.3e-38  Score=310.62  Aligned_cols=398  Identities=14%  Similarity=0.168  Sum_probs=281.1

Q ss_pred             hhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh
Q 008957           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (547)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr  143 (547)
                      +.++..+++.++..++++..++.                 .+|.+.+++|++..+.|++.+.+.+++.+++++.|+++||
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr   84 (434)
T PRK11663         22 RHILITMYLGYALFYFTRKSFNA-----------------AMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR   84 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH-----------------hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence            35666677778888888777664                 4489999999999999999999999999999999999999


Q ss_pred             cCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhh
Q 008957          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (547)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  223 (547)
                      +|||+++.++.++.+++.++.++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++++.+.++|.++++
T Consensus        85 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~  164 (434)
T PRK11663         85 SNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIP  164 (434)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhh
Q 008957          224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  303 (547)
Q Consensus       224 ~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (547)
                      ++++++.+.+|||+.|++.++++++..++.++..||.+.....++..++..                  +..+...+.+ 
T Consensus       165 ~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------------~~~~~~~~~~-  225 (434)
T PRK11663        165 LVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH------------------DALELAQQQE-  225 (434)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc------------------cccccchhcc-
Confidence            999999998999999999998877766666666666433211111100000                  0000000000 


Q ss_pred             cccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccc
Q 008957          304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGT  382 (547)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  382 (547)
                      .+.       ...++.+.  +..++++.++...+..++.......+..|+|.|+.+..+.+.... .......++++++.
T Consensus       226 ~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~  296 (434)
T PRK11663        226 GAG-------LSRKEILT--KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA  296 (434)
T ss_pred             ccC-------CChhhhHH--HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            000       00000001  125678888888877777777777888899999977777775443 44566678899999


Q ss_pred             eeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHH
Q 008957          383 ISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMA  462 (547)
Q Consensus       383 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g  462 (547)
                      ++.|++.||+.++.+................++......+........+..+++.............+..+++.|+++.|
T Consensus       297 ~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g  376 (434)
T PRK11663        297 LVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATG  376 (434)
T ss_pred             HHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHH
Confidence            99999999984332111111111111111111111111222222222222222221111122234456677799999999


Q ss_pred             HHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008957          463 ISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  508 (547)
Q Consensus       463 ~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  508 (547)
                      +.+...++ |.+++|.+.|++.|..| |...|++.+++.+++.+..
T Consensus       377 ~~~~~~~~-g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        377 FVGLFAYL-GAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLL  420 (434)
T ss_pred             HHHHHHHH-HHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence            99988887 88999999999999876 8888888887776665544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=5.4e-39  Score=327.45  Aligned_cols=427  Identities=14%  Similarity=0.131  Sum_probs=297.4

Q ss_pred             CCchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhh
Q 008957           61 FTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASL  140 (547)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l  140 (547)
                      +..|.++++++++.+...++...++.                 .+|.+.++++++..+.+++.+++.++.+++++++|++
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~-----------------ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~L  225 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGF-----------------VLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGL  225 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777888888888887775                 4488999999999999999999999999999999999


Q ss_pred             hhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhh
Q 008957          141 AKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA  220 (547)
Q Consensus       141 ~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  220 (547)
                      +||+|||+++++++++.++++++++++++++.++++|++.|++.++..+...+++.|++|+++|++.++++.+++.+|.+
T Consensus       226 sDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~i  305 (742)
T TIGR01299       226 ADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI  305 (742)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHhhcCC-------------CCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCc-cccccccccccCCcCCC
Q 008957          221 LGYVYGGVVGSH-------------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES-GKAQVVASVSEGSEASN  286 (547)
Q Consensus       221 ~g~~l~~~l~~~-------------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  286 (547)
                      +++.++..+...             .+||+.+++.++++++. ++.++++||++++.....+ ++......+....+...
T Consensus       306 la~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~  384 (742)
T TIGR01299       306 YAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRA  384 (742)
T ss_pred             HHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCC
Confidence            999887665432             36999999888776554 4455666887765322211 11110000000000000


Q ss_pred             CCcccc----cccccchhhh-----hccccc-----chhhhhhhhhhhhhhHhhcccc---hhHHHHHHHHHHHHHHHHH
Q 008957          287 LNDHVS----EDISDQASER-----SIKSIG-----ESRFLNQLSQFSQDTKVLLQEK---VYVVNVLGYIAYNFVIGAY  349 (547)
Q Consensus       287 ~~~~~~----~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  349 (547)
                      ......    +.++.....+     +.....     ...........|.+++.+|+.+   +.+.+.+.+++..+.++++
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl  464 (742)
T TIGR01299       385 KGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGL  464 (742)
T ss_pred             cCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000    0000000000     000000     0000011223344566666653   3445666678888889999


Q ss_pred             hhhccceeEee-----------------------------------c------cC-------------------------
Q 008957          350 SYWGPKAGYNI-----------------------------------Y------HM-------------------------  363 (547)
Q Consensus       350 ~~~~p~~~~~~-----------------------------------~------~~-------------------------  363 (547)
                      ..|+|.++.+.                                   +      +.                         
T Consensus       465 ~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (742)
T TIGR01299       465 SVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNT  544 (742)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccch
Confidence            99999653220                                   0      00                         


Q ss_pred             ---------------------------------------------c----hhhHhhhhhhcccccccceeeeeeeecccc
Q 008957          364 ---------------------------------------------S----NADMMFGGVTIVCGIVGTISGGFILDQMGA  394 (547)
Q Consensus       364 ---------------------------------------------~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  394 (547)
                                                                   +    ........+..++.+++.+++|+++||+||
T Consensus       545 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GR  624 (742)
T TIGR01299       545 FFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGR  624 (742)
T ss_pred             hhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                                                         0    000122345568889999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCC
Q 008957          395 TISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV  474 (547)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~  474 (547)
                      |     ++++.+.++.++++++.....+....+++.++.+++.+..++....++.+.+|++.|++++|+.+...++ |.+
T Consensus       625 r-----~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rl-Gai  698 (742)
T TIGR01299       625 L-----RMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKA-AAV  698 (742)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHH
Confidence            9     6777777776666666555555555555566666766777777888889999999999999999888887 999


Q ss_pred             CccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008957          475 PSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKS  516 (547)
Q Consensus       475 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (547)
                      ++|++.|.+.+..  ...++++.+++.++++++.+   ++|+
T Consensus       699 igp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~---~LPE  735 (742)
T TIGR01299       699 LGILIFGSFVGIT--KAAPILFASAALACGGLLAL---KLPD  735 (742)
T ss_pred             HHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHH---hCCC
Confidence            9999999887742  44677777666665555444   4455

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=2.5e-37  Score=302.85  Aligned_cols=346  Identities=16%  Similarity=0.109  Sum_probs=265.7

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      .+|.+.+|+|.|..+.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++++++++++|++.++++|+++|++
T Consensus        31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~  110 (390)
T PRK03545         31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFA  110 (390)
T ss_pred             chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      .+...+...+++.|++|+++|+++++++..+.++|.+++|++++.+.++.|||+.|++.++++++..+..++..|+.++ 
T Consensus       111 ~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~-  189 (390)
T PRK03545        111 HAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS-  189 (390)
T ss_pred             HHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC-
Confidence            9999999999999999999999999999999999999999999999998999999999999888776666665554211 


Q ss_pred             CCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHH
Q 008957          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                           +++..                                              .++.++.+++|.++......++..
T Consensus       190 -----~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  218 (390)
T PRK03545        190 -----EHSGS----------------------------------------------LKSLPLLFRRPALVSLYLLTVVVV  218 (390)
T ss_pred             -----CCcch----------------------------------------------HHHHHHHHhCcHHHHHHHHHHHHH
Confidence                 00000                                              022346778888776655555555


Q ss_pred             HHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008957          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  422 (547)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (547)
                      ........+.|.++++..+.+.... .+.....++++++.++.+++.||+++|     .......+.......+....++
T Consensus       219 ~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~l~~~~~~  293 (390)
T PRK03545        219 TAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG-----FLLIAIALLLVCLLLLLPAANS  293 (390)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHHHHHHHhch
Confidence            5555555667777777666665433 444556678899999999999999876     4443333333333333333344


Q ss_pred             HHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHH
Q 008957          423 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  502 (547)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  502 (547)
                      .+...+...+.+++.....+.......+. .|+.|+++.|+.+...+. |..+||.+.|++.|+.| ++..+.+.+.+.+
T Consensus       294 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~-g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~  370 (390)
T PRK03545        294 EWHLSVLSIFWGIAIMCIGLAMQVKVLKL-APDATDVAMALFSGIFNI-GIGAGALLGNQVSLHLG-LSSIGYVGAALAL  370 (390)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHh-CCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hhHHHHHHHHHHH
Confidence            45555555555555544434444444454 457889999999877777 88889999999999876 7788887777766


Q ss_pred             HHHHHHH
Q 008957          503 LAAGIWF  509 (547)
Q Consensus       503 ~~~~~~~  509 (547)
                      ++.+...
T Consensus       371 ~~~~~~~  377 (390)
T PRK03545        371 AALVWSI  377 (390)
T ss_pred             HHHHHHH
Confidence            6555544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=1.9e-37  Score=297.78  Aligned_cols=352  Identities=13%  Similarity=0.044  Sum_probs=257.9

Q ss_pred             ccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHh
Q 008957          101 ICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV  180 (547)
Q Consensus       101 ~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  180 (547)
                      |.|.+|.+++|+|+|..+.|++.+++.+++.+++++.|+++||+|||++++.+.+....+.+....++|++.++++|+++
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~   89 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLA   89 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            44677999999999999999999999999999999999999999999877665555545443333447999999999999


Q ss_pred             hhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCc
Q 008957          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  260 (547)
                      |++.+. .+.....++|++|+++|++++++.+.+.++|.++++++++++.+++|||+.|++.++++++..++.++..||.
T Consensus        90 G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~  168 (368)
T TIGR00903        90 ALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPAL  168 (368)
T ss_pred             HhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999986 4556666799999999999999999999999999999999999999999999999999888888888777874


Q ss_pred             cCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHH
Q 008957          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (547)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (547)
                      ++...  +   ..                   +     .              .   +..+++++++++|.+|...+..+
T Consensus       169 p~~~~--~---~~-------------------~-----~--------------~---~~~~~~~~ll~~~~~~~~~~~~~  202 (368)
T TIGR00903       169 PFQAA--E---GF-------------------G-----F--------------K---DAVKEFGALAGRKDLWIIGAILG  202 (368)
T ss_pred             CCCCC--C---Cc-------------------c-----h--------------H---HHHHHHHHHHcChhHHHHHHHHH
Confidence            32210  0   00                   0     0              0   00123567889999999999999


Q ss_pred             HHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 008957          341 AYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  420 (547)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (547)
                      +.....+++.+|+|.|+++. +.+........+..+.+.++   .+++.||..||..++ ........+..+.+......
T Consensus       203 ~~~~~~~~~~~wlp~~L~~~-g~s~~~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~-~~~~~~~~~~a~~~~~~~~~  277 (368)
T TIGR00903       203 FGVALFDNLAIWLEAALRPA-GLEDIAGDAVALAILAGLIG---VAVIPDRVARAGLRS-IYIRAAALLIAAFFLALAFE  277 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHH---HHHhhHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999764 45543333334444444444   478889887653221 22221222222222222222


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHH
Q 008957          421 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  500 (547)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  500 (547)
                      .+....+++.++.+++....++..+.+..|.+|++.|+++.|+.+...+. |++++|.+.+.+..  + ....|.+++..
T Consensus       278 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~-~~~~~~~~~~~~~~--~-~~~~f~~~~~~  353 (368)
T TIGR00903       278 LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRA-ISVALALAAMLFIS--S-AEAYFTFLAIL  353 (368)
T ss_pred             cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHH-HHHHHHHHHHHHhc--C-HHHHHHHHHHH
Confidence            33333444555555555556666777788999999999999999988888 77778888887774  3 44667777766


Q ss_pred             HHHHHHHH
Q 008957          501 FFLAAGIW  508 (547)
Q Consensus       501 ~~~~~~~~  508 (547)
                      .+++.+..
T Consensus       354 ~~i~~~~~  361 (368)
T TIGR00903       354 ITIAFAIA  361 (368)
T ss_pred             HHHHHHHH
Confidence            66655554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=8.4e-37  Score=304.99  Aligned_cols=362  Identities=12%  Similarity=0.008  Sum_probs=250.4

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      .+|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|++.|++
T Consensus        58 ~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~  137 (476)
T PLN00028         58 LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFS  137 (476)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhc----C-----CCCchhHHHHHHHHHHHHHHHHH
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG----S-----HLNWRYAFWGEAILMLPFAVLAF  254 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~----~-----~~gwr~~f~~~~~~~~~~~~~~~  254 (547)
                      .+... ....+++|++|+++||+++++.....++|..+++.+.+.+.    +     ..|||+.|++.++++++..++.+
T Consensus       138 ~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~  216 (476)
T PLN00028        138 LATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL  216 (476)
T ss_pred             HHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            88654 45668899999999999999998877777777766554432    1     25899999999999888777776


Q ss_pred             hhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHH
Q 008957          255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (547)
Q Consensus       255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (547)
                      ++.++.+..      .  ..+.++              +    ..    .++          ++....+++.++++++|.
T Consensus       217 ~~~~~~p~~------~--~~~~~~--------------~----~~----~~~----------~~~~~~~~~~~~~~~~~~  256 (476)
T PLN00028        217 TLGQDLPDG------N--YRELKK--------------S----GT----MPK----------DSFSKVLRYGVTNYRTWI  256 (476)
T ss_pred             HHcCcCCCC------c--hhhHHh--------------c----Cc----ccc----------ccHHHHHHHHHcCchhHH
Confidence            654432111      0  000000              0    00    000          001123456678888887


Q ss_pred             HHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhH--HHHHHHHHHHHH
Q 008957          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA--FKLLSAATFLGA  411 (547)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~~  411 (547)
                      ..+..++.......+..+.|.|+.+..+.+.... .+..+..++++++++++|+++||++||...+  +........+..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~  336 (476)
T PLN00028        257 LALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGG  336 (476)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence            7776666666666677788888877777775443 5556777899999999999999999874321  122222223232


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcc--cch
Q 008957          412 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH--VNN  489 (547)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~--~~~  489 (547)
                      +.+++....++.+..++.+++.+++.....+....+.. ++.++.+|++.|+.+...     .+|+.+.+++.+.  .++
T Consensus       337 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~g-----~lg~~i~~~l~~~~~~~~  410 (476)
T PLN00028        337 VFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP-FVSRRSLGVISGLTGAGG-----NVGAVLTQLLFFTGSSYS  410 (476)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc-ccChhhchhhhhhhhccc-----cHHHHHHHHHHHhcCCcc
Confidence            22233233333333344444444444444444444433 356678999888875433     3355555555542  346


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 008957          490 WRKTTLALTSIFFLAAGIWFVGI  512 (547)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~  512 (547)
                      |..+|++.+++.+++.++.+..+
T Consensus       411 y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        411 TETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhee
Confidence            88899998888887777666544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1e-36  Score=300.89  Aligned_cols=380  Identities=17%  Similarity=0.166  Sum_probs=280.7

Q ss_pred             CchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhh
Q 008957           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (547)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~  141 (547)
                      +.|..+.+++...+.+++|....+.                 ..|.+.+++|.++.+.+++.+.+.++..+++++.|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~   74 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGV-----------------AAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLA   74 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777778888888998888875                 34899999999999999999999999999999999999


Q ss_pred             hhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhh
Q 008957          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (547)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (547)
                      ||+|||+++..+.++..++.+++++++|++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+
T Consensus        75 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  154 (406)
T PRK11551         75 DRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL  154 (406)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhh
Q 008957          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE  301 (547)
Q Consensus       222 g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (547)
                      ++.+++.+.+..+||+.|++.++..++..++..++.||+++...++++++ .                            
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~----------------------------  205 (406)
T PRK11551        155 ASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK-Q----------------------------  205 (406)
T ss_pred             HHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch-h----------------------------
Confidence            99999999888999999999888777666666666676432210000000 0                            


Q ss_pred             hhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhh-Hhhhhhhcccccc
Q 008957          302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIV  380 (547)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~  380 (547)
                         ++       ...    .......+.+..+...+..++.....+....|.|.++++. +.+... ........++.++
T Consensus       206 ---~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s~~~~~~~~~~~~~~~~~  270 (406)
T PRK11551        206 ---RA-------PVL----RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQ-GLSRSQAGLVQIAFNIGGAL  270 (406)
T ss_pred             ---hh-------hhH----HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChhhhhHHHHHHHHHHHH
Confidence               00       000    0000000112223333334444455566677888888764 554333 3445566788899


Q ss_pred             cceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHH
Q 008957          381 GTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALS  460 (547)
Q Consensus       381 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  460 (547)
                      +.++.|++.||+++|     +.+..........++.....++.+...+..++.+++.....+.......+.+|++.|+++
T Consensus       271 ~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~  345 (406)
T PRK11551        271 GSLLIGALMDRLRPR-----RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTG  345 (406)
T ss_pred             HHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhh
Confidence            999999999999988     455444333333333333344444444555555555555666667778888899999999


Q ss_pred             HHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008957          461 MAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  508 (547)
Q Consensus       461 ~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  508 (547)
                      .|+.+...+. |..++|.+.|.+.++.+++...+.....+.+++.++.
T Consensus       346 ~g~~~~~~~~-g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK11551        346 VGAAVAVGRL-GSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA  392 (406)
T ss_pred             hhHHHHhhhH-HHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999888777 8889999999999986666555555555544444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=3.1e-36  Score=299.37  Aligned_cols=401  Identities=14%  Similarity=0.069  Sum_probs=282.1

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  142 (547)
                      .|.++..+++.....+.+...++.                 .+|.+.+++|++.++.+++.+.+.++..++.+++|+++|
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~d   79 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTV-----------------FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVN   79 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhh-----------------hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            355666666666666666554554                 348899999999999999999999999999999999999


Q ss_pred             hcCCceehHHHHHHHHHHHHhhhccccHHHHHH-HHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhh
Q 008957          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (547)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (547)
                      |+|||++++.+.++.++++++++++++++.+++ .|++.|++.+...+....++.++++ ++|++++++.+.+..+|..+
T Consensus        80 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~  158 (455)
T TIGR00892        80 RFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLST  158 (455)
T ss_pred             HcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHH
Confidence            999999999999999999999999999998875 5799999999877777888899996 67999999999999999999


Q ss_pred             hhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhh
Q 008957          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE  301 (547)
Q Consensus       222 g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (547)
                      +|++++.+.+.+|||+.|++.+++.++..+..+++.|+.......+++.+     +.   .+.... .   ++.+     
T Consensus       159 ~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~-~---~~~~-----  221 (455)
T TIGR00892       159 LAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK-----EG---LPPDGS-T---KKLS-----  221 (455)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc-----cc---CCCCCc-c---cccc-----
Confidence            99999999988999999999999887766655555443111000000000     00   000000 0   0000     


Q ss_pred             hhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccc
Q 008957          302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIV  380 (547)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~  380 (547)
                       ....  .    +..++ ..++ .++++|.++...+..++..........++|.|.++ .+.+.... .+..+.+++.++
T Consensus       222 -~~~~--~----~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~  291 (455)
T TIGR00892       222 -KKST--A----EKINR-FLDF-SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIF  291 (455)
T ss_pred             -ccch--h----hhhhh-hcch-HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence             0000  0    00000 1112 46688888888777777777777777788888876 45554333 445566788888


Q ss_pred             cceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHH
Q 008957          381 GTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALS  460 (547)
Q Consensus       381 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  460 (547)
                      +.++++++.||...+..+ ...+..+.++.....++....++.+..++..++.+++.+...+.....+.+.+|++.++++
T Consensus       292 ~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~  370 (455)
T TIGR00892       292 ARPSCGLIAGLKWIRPHV-QYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSA  370 (455)
T ss_pred             HHHHHHHHhcccccCHHH-HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhH
Confidence            888999999974322111 0222222222222222333345555556666667776666667777788888899999999


Q ss_pred             HHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          461 MAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       461 ~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (547)
                      .|+.+...+. |.++||.+.|.+.|..++|+..|++.+++.+++.+...+
T Consensus       371 ~g~~~~~~~l-g~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~  419 (455)
T TIGR00892       371 VGLVTIVECC-AVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAI  419 (455)
T ss_pred             HhHHHHHHHH-HHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHH
Confidence            9999888777 989999999999998877888888888776665554443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.4e-36  Score=301.06  Aligned_cols=372  Identities=14%  Similarity=0.075  Sum_probs=249.8

Q ss_pred             hHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccc---cCccchhHHHHHHH---HHHhhhhhhhh
Q 008957           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFK---LNNFQDGVLSSAFM---VGLLVASPIFA  138 (547)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~---~s~~~~g~~~s~~~---~~~~~~~~~~g  138 (547)
                      +.+...+++++++++|+.+++..                 .|.+.++++   .+..+.+.+.+.+.   ++..++++++|
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G   84 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYVYSFC-----------------SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFG   84 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666678899999999998863                 388899985   45555445444444   44559999999


Q ss_pred             hhhhhcCCceehHHHHHHHHHHHHhhhccccHH--------HHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhH
Q 008957          139 SLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM  210 (547)
Q Consensus       139 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  210 (547)
                      +++||+|||+++.+++++++++++++++++++.        .++++|+++|++.|..++...++++|++|+++|+++.++
T Consensus        85 ~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~  164 (432)
T PRK10406         85 RIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASF  164 (432)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHH
Confidence            999999999999999999999999999999874        588999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhhHHhhc--------CCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCC
Q 008957          211 FYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  282 (547)
Q Consensus       211 ~~~~~~~G~~~g~~l~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  282 (547)
                      .+.+...|.++++++...+.        ..+|||++|++.++++++... .....||+++.    + .+ .         
T Consensus       165 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~----~-~~-~---------  228 (432)
T PRK10406        165 QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ----E-TR-A---------  228 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH----H-Hh-h---------
Confidence            99988888888887665543        257999999998877655432 22223432110    0 00 0         


Q ss_pred             cCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHH-HHHHHHHhhhccceeEeec
Q 008957          283 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY-NFVIGAYSYWGPKAGYNIY  361 (547)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~  361 (547)
                                          ..+              ..+++++++++..+...+...+. ...++.+..|+|.|+++..
T Consensus       229 --------------------~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~  274 (432)
T PRK10406        229 --------------------LKE--------------AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTA  274 (432)
T ss_pred             --------------------hcc--------------cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                                000              01245566777777655554443 5667778889999988776


Q ss_pred             cCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHH-HHH-H--hhhHHHHHHHHHHHHHH
Q 008957          362 HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TAF-C--LSSLYGFLALFTVGELL  436 (547)
Q Consensus       362 ~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~  436 (547)
                      +.+.... ....+..++..++.++.|+++||++||     +.+.....+..+... ... .  .++....+.+..+..++
T Consensus       275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (432)
T PRK10406        275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR-----TSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLI  349 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            7765333 334445556677778889999999998     444333332222211 111 1  11222222222222222


Q ss_pred             HhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          437 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      .+...+....+..|.+|++.|+++.|+.+...+.+.+...|.+.+.+ +..|.+...+++.+++.+++.+..+
T Consensus       350 ~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        350 VSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            22233334555678888999999999998777654334477777755 5556565555555555555444433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.8e-36  Score=304.54  Aligned_cols=384  Identities=11%  Similarity=0.034  Sum_probs=254.5

Q ss_pred             hhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccc-hhHH-----HHHHHHHHhhhhhhh
Q 008957           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQ-DGVL-----SSAFMVGLLVASPIF  137 (547)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~-~g~~-----~s~~~~~~~~~~~~~  137 (547)
                      ++.+...+++++++++|...+++                 ..|.+.++|+.+.++ .+++     .++..+++.++++++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~   77 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGF-----------------VAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFF   77 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778899999999999876                 338888888754433 2332     577889999999999


Q ss_pred             hhhhhhcCCceehHHHHHHHHHHHHhhhccccHHH--------HHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhh
Q 008957          138 ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS  209 (547)
Q Consensus       138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  209 (547)
                      |+++||+|||+++.+++++++++++++++++|+++        ++++|+++|++.|..++...++++|++|+++||++.+
T Consensus        78 G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~  157 (490)
T PRK10642         78 GMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS  157 (490)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence            99999999999999999999999999999999875        8899999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhhHHhhc--------CCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccC
Q 008957          210 MFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  281 (547)
Q Consensus       210 ~~~~~~~~G~~~g~~l~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  281 (547)
                      +...+..+|..+|+.++..+.        ..+|||+.|++.++++++ .++.....||+++.....++.+.    .    
T Consensus       158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~----~----  228 (490)
T PRK10642        158 WLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQ----G----  228 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhh----h----
Confidence            999988888888886654432        357999999997765554 33333445664332100000000    0    


Q ss_pred             CcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhccc-ch-hHHHHHHHHHHHHHHHHHhhhccceeEe
Q 008957          282 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE-KV-YVVNVLGYIAYNFVIGAYSYWGPKAGYN  359 (547)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~  359 (547)
                          .     .+...      +.+.              .++++++++ +. +.......++....++.+..|+|.|+++
T Consensus       229 ----~-----~~~~~------~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  279 (490)
T PRK10642        229 ----D-----REGLQ------DGPK--------------VSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSH  279 (490)
T ss_pred             ----c-----ccccc------cccc--------------CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0     00000      0000              112233321 22 2222223344556677788899999977


Q ss_pred             eccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH-HH--HHHHhhhHHHHHHHHHHHHH
Q 008957          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CL--TAFCLSSLYGFLALFTVGEL  435 (547)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~  435 (547)
                      ..+.+.... .......++.+++.++.|+++||+|||     +.+..+.+...+. ..  .....++.....+..++.++
T Consensus       280 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  354 (490)
T PRK10642        280 NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR-----PFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAV  354 (490)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            666664333 334455677888889999999999998     5544443322221 11  11112223333333344444


Q ss_pred             HHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008957          436 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  508 (547)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  508 (547)
                      +.+...+.......+.+|++.|+++.|+.+..... ++.++|.+.+++.+..+++..++++..+..+++.+..
T Consensus       355 ~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~-~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~  426 (490)
T PRK10642        355 ILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVL-VAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            44444444455566778899999999986666666 4467899999998866555555554444444444433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=4.4e-36  Score=301.09  Aligned_cols=415  Identities=13%  Similarity=0.126  Sum_probs=289.4

Q ss_pred             CchhHHHHHHHHHHHHhhcccccccccccCCccccCCC-----CccccccccccccccCccchhHHHHHHHHHHhhhhhh
Q 008957           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDK-----GICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPI  136 (547)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~  136 (547)
                      .++.+..++++++.+++.|+.+++.+........+++.     ...|.......|++++..+.|++.+++.+++.+++++
T Consensus        16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~   95 (465)
T TIGR00894        16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIP   95 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcc
Confidence            34567777888888999999999986542221110000     0001111222389999999999999999999999999


Q ss_pred             hhhhhhhcCCceehHHHHHHHHHHHHhhhcc--ccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHh
Q 008957          137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC  214 (547)
Q Consensus       137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  214 (547)
                      .|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...+....++.||+|+++|++++++...+
T Consensus        96 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  175 (465)
T TIGR00894        96 VGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG  175 (465)
T ss_pred             hHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887544  56888999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhHHhhcCC-CCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccccc
Q 008957          215 IPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSE  293 (547)
Q Consensus       215 ~~~G~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (547)
                      ..+|.++++++++.+.+. .|||+.|++.++++++..++++++.++.++..+..++.      ++              +
T Consensus       176 ~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------~~--------------~  235 (465)
T TIGR00894       176 FQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKF------EK--------------K  235 (465)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHH------HH--------------H
Confidence            999999999999999988 49999999999998888777777766543221100000      00              0


Q ss_pred             ccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhh
Q 008957          294 DISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGG  372 (547)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~  372 (547)
                      ..++..+.+..+.           +....++++++++.++...+..++.....+.+.+|+|.|+++..+.+.... ....
T Consensus       236 ~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~  304 (465)
T TIGR00894       236 YINSSLQGQKGST-----------RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSS  304 (465)
T ss_pred             HHHhhcccccCCC-----------CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHH
Confidence            0000000000000           001236678899999999999999999999999999999988877775443 4556


Q ss_pred             hhcccccccceeeeeeeecccccchhHHH----HHHHHHHHHHHH-HHHHHH-hhhHHHHHHHHHHHHHHHhhcCcccee
Q 008957          373 VTIVCGIVGTISGGFILDQMGATISNAFK----LLSAATFLGAIS-CLTAFC-LSSLYGFLALFTVGELLVFATQAPVNY  446 (547)
Q Consensus       373 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (547)
                      ++.++.+++.+++|+++||+++|+...+.    ............ .+.... ..+....++++++.+++.+...+....
T Consensus       305 ~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  384 (465)
T TIGR00894       305 LPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLI  384 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhh
Confidence            77888999999999999998765322211    111111111111 111111 123333334444444444333333333


Q ss_pred             eeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhccc--chhHHHHHHHHHHHHHHHHHHH
Q 008957          447 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV--NNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       447 ~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      . ..+..++.+|.+.|+.+....+ |.+++|.+.|++.+..  +.|...|.+.+++.+++.++..
T Consensus       385 ~-~~~~~~~~~g~~~g~~~~~~~l-~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       385 N-SLDLAPRFLGFIKGITGLPGFI-GGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             c-hhhcChhHHHHHHHHHHHHHHH-HHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            3 3345567999999999888887 8788999999988753  4577788877777666555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=3.3e-36  Score=297.10  Aligned_cols=377  Identities=18%  Similarity=0.205  Sum_probs=277.4

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      ..|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.++.++++|++.++++|++.|++
T Consensus        16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   95 (399)
T TIGR00893        16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAA   95 (399)
T ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            44889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      .+...+....++.|++|+++|++++++.+....+|.++++.+++.+.+..+||+.|++.+++.++..++.++..|++++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (399)
T TIGR00893        96 EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK  175 (399)
T ss_pred             HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCc
Confidence            99999999999999999999999999999999999999999999999889999999999988887777776666654322


Q ss_pred             CCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHH
Q 008957          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                      ....+++      ++....+...      +    +.+.++           ..+......++.+++|.++...+..++..
T Consensus       176 ~~~~~~~------~~~~~~~~~~------~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (399)
T TIGR00893       176 AKWLTEE------EKYIVVGGLL------A----EQQGKG-----------PSTPKKYQIKELLKDRRVWGLALGQFLVN  228 (399)
T ss_pred             cccCCHH------HHhhcchhhc------c----cccccc-----------ccCCCccchHHHhcCHHHHHHHHHHHHHH
Confidence            1110000      0000000000      0    000000           00011134566778899998888888888


Q ss_pred             HHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH---
Q 008957          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---  419 (547)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  419 (547)
                      .....+..+.|.|+++..+.+.... .......++++++.++.+++.||+++|+..................+....   
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (399)
T TIGR00893       229 IGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY  308 (399)
T ss_pred             hHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence            8888889999999988777765443 445566788899999999999999998421101111111111111111111   


Q ss_pred             hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHH
Q 008957          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  499 (547)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  499 (547)
                      .++.+.......+. .+.....+....+..+..|++.|+++.|+.+...+. |..++|.+.|++.|..|+|...+.+.++
T Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~i~g~l~~~~g~~~~~~~~~~~  386 (399)
T TIGR00893       309 VNIPYAALALVALG-FFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNL-GGIVGPIVIGAIAATTGSFAGALMVVAA  386 (399)
T ss_pred             chhHHHHHHHHHHH-HhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHH-hhhhhhHHhhhhccCCCchhHHHHHHHH
Confidence            12233333233333 233335667777888889999999999999888877 8899999999999987768788887777


Q ss_pred             HHHHHHHHHH
Q 008957          500 IFFLAAGIWF  509 (547)
Q Consensus       500 ~~~~~~~~~~  509 (547)
                      +.+++.+..+
T Consensus       387 ~~~~~~~~~~  396 (399)
T TIGR00893       387 LALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHH
Confidence            7666555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.1e-35  Score=296.17  Aligned_cols=400  Identities=13%  Similarity=0.072  Sum_probs=271.7

Q ss_pred             hhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh
Q 008957           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (547)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr  143 (547)
                      |.++..+++.+...+.++..++.                 .+|.+.++ |++..+.+++.+.+.+++.++++++|+++||
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr   89 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFAL-----------------AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR   89 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----------------hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            45566666777777777776664                 33888888 9999999999999999999999999999999


Q ss_pred             cCCceehHHHHHHHHHHHHhhhcc----ccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhh
Q 008957          144 HNPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV  219 (547)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  219 (547)
                      +|||++++++.++.+++.++++++    ++++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.
T Consensus        90 ~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  169 (452)
T PRK11273         90 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG  169 (452)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999988875    3788899999999999998888888889999999999999999999999986


Q ss_pred             h-hhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccc
Q 008957          220 A-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (547)
Q Consensus       220 ~-~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (547)
                      . .+++++..+....|||+.|++.++++++..++.+++.||+++....+++++..      .+   ..      +..++ 
T Consensus       170 ~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~---~~------~~~~~-  233 (452)
T PRK11273        170 GLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK------ND---YP------DDYNE-  233 (452)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh------hc---cc------ccccc-
Confidence            4 45555434433458999999999888887777777777644321111100000      00   00      00000 


Q ss_pred             hhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhccc
Q 008957          299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVC  377 (547)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~  377 (547)
                         ++.++       ...++.  -.+.+++++.+|...+..++.....+.+..|.|.|+++..+.+.... ....+..++
T Consensus       234 ---~~~~~-------~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~  301 (452)
T PRK11273        234 ---KHEQE-------LTAKQI--FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA  301 (452)
T ss_pred             ---ccCCC-------ccHHHH--HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence               00000       000000  01246788999988888888887788888999999998777664333 344566678


Q ss_pred             ccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCc
Q 008957          378 GIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS  455 (547)
Q Consensus       378 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (547)
                      .+++.++.|+++||+++++..  ........+..+..+....  ..+.+...+..++.+.+.............+..|++
T Consensus       302 ~~~g~~~~G~l~dr~~~~r~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  379 (452)
T PRK11273        302 GIPGTLLCGWMSDKVFRGNRG--ATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKK  379 (452)
T ss_pred             HHHHHHHHHHHHHHHccCCcc--hHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChh
Confidence            888999999999999542111  1111111111111111111  112222223333333322222222223456778889


Q ss_pred             chhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008957          456 LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  512 (547)
Q Consensus       456 ~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (547)
                      .||++.|+.+...+..+..++|.+.|++.|+.| |+..|.+.+++.+++++......
T Consensus       380 ~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        380 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999887777334457999999999887 88888888877777666655444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=1.8e-35  Score=289.17  Aligned_cols=346  Identities=12%  Similarity=-0.029  Sum_probs=259.0

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhh
Q 008957          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (547)
Q Consensus       103 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (547)
                      |.+|.+++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.++++|+++|+
T Consensus        30 ~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gi  109 (393)
T PRK09705         30 PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGV  109 (393)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHh
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC-CchhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      +.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.++. +||+.+.+.++..++..+..++..++.+
T Consensus       110 g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (393)
T PRK09705        110 GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREV  188 (393)
T ss_pred             HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999997 67999999999999999999999999988775 8999988777665543332222211110


Q ss_pred             CCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHH
Q 008957          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (547)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (547)
                      +     ++++..                                               ...++.++++..+...+..++
T Consensus       189 ~-----~~~~~~-----------------------------------------------~~~~~~l~~~~~~~l~~~~~~  216 (393)
T PRK09705        189 A-----SSHKTT-----------------------------------------------TTPVRVVFTPRAWTLGVYFGL  216 (393)
T ss_pred             c-----cccCCC-----------------------------------------------cCCcccccCHhHHHHHHHHHH
Confidence            0     000000                                               001223456667766666666


Q ss_pred             HHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 008957          342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  420 (547)
Q Consensus       342 ~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (547)
                      ....+.....|.|.++++ .+.+.... ....+..++.+++.++.+++.||+++|     +.+..+..+.....++....
T Consensus       217 ~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----~~~~~~~~l~~~~~~~~~~~  290 (393)
T PRK09705        217 INGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR-----KLLMLALVLQLVGFCGFIWL  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch-----HHHHHHHHHHHHHHHHHHHc
Confidence            777777888899999887 56665433 455677789999999999999999988     45544444443333332222


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCccceeeeecccC-CcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHH
Q 008957          421 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  499 (547)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  499 (547)
                      +..... ...++.+++.+...+.......+..+ ++.+++..|+.+...+. +..++|.+.|++.|..|+|...+++.++
T Consensus       291 ~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~gp~~~G~l~~~~g~~~~~~~~~~~  368 (393)
T PRK09705        291 PLQLPV-LWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFI-IAGLAPWFSGVLRSISGNYLMDWAFHAL  368 (393)
T ss_pred             cchHHH-HHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            221111 12233455555555555445556665 47899999999888877 7788999999999999888888888777


Q ss_pred             HHHHHHHHHH
Q 008957          500 IFFLAAGIWF  509 (547)
Q Consensus       500 ~~~~~~~~~~  509 (547)
                      +.++..++..
T Consensus       369 ~~~~~~~~~~  378 (393)
T PRK09705        369 CVVGLMIITL  378 (393)
T ss_pred             HHHHHHHHHH
Confidence            7665544443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.4e-35  Score=298.31  Aligned_cols=388  Identities=13%  Similarity=0.082  Sum_probs=287.0

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  142 (547)
                      .|..+..+++..++..+|.++++.                 ++|.+.+|+|.+.++.+|+.+.|.+++.++.+++|+++|
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~-----------------a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D   66 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHV-----------------AAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD   66 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788889999999999999987                 459999999999999999999999999999999999999


Q ss_pred             hcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccC-CCCCcchhhhHHHHhhhhhhhh
Q 008957          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVAL  221 (547)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~  221 (547)
                      |+|||++++++.+++.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+
T Consensus        67 ~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~  146 (495)
T PRK14995         67 RIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF  146 (495)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988888887776 6789999999999999999999


Q ss_pred             hhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhh
Q 008957          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE  301 (547)
Q Consensus       222 g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (547)
                      ||++++++.++.||||.|++...++++..++.+++.|+.+...  .++.+...........      ......++..   
T Consensus       147 gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~------~~l~~~~~~~---  215 (495)
T PRK14995        147 GPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAI------LLLVYSAKTA---  215 (495)
T ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHH------HHHHHHHHhc---
Confidence            9999999999999999999998888877777777777633211  0000000000000000      0000000000   


Q ss_pred             hhcccccch----------------hhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCch
Q 008957          302 RSIKSIGES----------------RFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  365 (547)
Q Consensus       302 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  365 (547)
                      .......+.                ....+.++...+ .++++++.+....+..++......+..++.|.|++...+.++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~  294 (495)
T PRK14995        216 LKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSP  294 (495)
T ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            000000000                000000011111 357888888888887777777788888899999998888886


Q ss_pred             hhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhhcC
Q 008957          366 ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQ  441 (547)
Q Consensus       366 ~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  441 (547)
                      ... .......++..++.++.|++.||+++|     +.+..+..+..+..++....   .+.+......++.+++.+...
T Consensus       295 ~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~  369 (495)
T PRK14995        295 LEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASAL  369 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHH
Confidence            555 444555678888999999999999987     55554444444333322221   234444556677777777777


Q ss_pred             ccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc
Q 008957          442 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  485 (547)
Q Consensus       442 ~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~  485 (547)
                      ++......+.+|++.++.+.++.+...++ |..+|+.+.|.+.+
T Consensus       370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-G~~~G~ai~g~i~~  412 (495)
T PRK14995        370 LASTSAIMAAAPPEKAAAAGAIETMAYEL-GAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHhcCCHHhcchHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            77777788888999999999999888887 88889988888876

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=2.3e-35  Score=288.90  Aligned_cols=347  Identities=12%  Similarity=0.032  Sum_probs=260.2

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      .+|.+.+++|++..+.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.+++++++|++.++++|++.|++
T Consensus        25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  104 (377)
T TIGR00890        25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAG  104 (377)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            44999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      .+...+.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..|||+.|++.++++++..+..+++.+++++.
T Consensus       105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  183 (377)
T TIGR00890       105 VGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ  183 (377)
T ss_pred             HHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchh
Confidence            99888888888999987 46999999999999999988777777777778999999999999888877777766542211


Q ss_pred             CCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHH
Q 008957          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                      ..++  ++.                      .+       .+              ..+.++.++++.++...+..++..
T Consensus       184 ~~~~--~~~----------------------~~-------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  218 (377)
T TIGR00890       184 LIKT--NIE----------------------VS-------VK--------------DYTVWEMLRTPQFWVLYLSFFLNA  218 (377)
T ss_pred             cccc--Ccc----------------------cc-------hh--------------hhhHHHHHcCccHHHHHHHHHHHh
Confidence            0000  000                      00       00              012345667788777766666555


Q ss_pred             HHHHHHhhhccceeEeeccCchhh-HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008957          344 FVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  422 (547)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (547)
                      ........+.+.|.++ .+.+... .....+..++.+++.++.|++.||++||     +.+..+..+.....++....++
T Consensus       219 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~  292 (377)
T TIGR00890       219 VSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ-----KTMSIVFGISAVGMAAMLFIPM  292 (377)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhHHHHHHHHHHHHHHHccc
Confidence            5554555555556544 3444332 3455667788899999999999999998     5555555544444444333332


Q ss_pred             --HHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHH
Q 008957          423 --LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  500 (547)
Q Consensus       423 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  500 (547)
                        ........++.+++.+...+.......+.+|+++|+++.|+.+...++ |..++|.+.|.+.+..| |+..+.+.+++
T Consensus       293 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~f~~~~~~  370 (377)
T TIGR00890       293 LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAV-AGIFGGLIASHALTEIG-FEYTFIVTGAF  370 (377)
T ss_pred             chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHH-HHHHHHHHHHHHHhhhc-hhhHHHHHHHH
Confidence              222223334445555555555566677888889999999999888777 88999999999998865 77888777766


Q ss_pred             HHHH
Q 008957          501 FFLA  504 (547)
Q Consensus       501 ~~~~  504 (547)
                      .+++
T Consensus       371 ~~~~  374 (377)
T TIGR00890       371 ALTS  374 (377)
T ss_pred             HHHh
Confidence            5543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=1.6e-34  Score=281.93  Aligned_cols=347  Identities=15%  Similarity=0.155  Sum_probs=252.9

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      .+|.+++|+|.+..+.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++
T Consensus        25 ~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~  104 (382)
T PRK10091         25 VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFP  104 (382)
T ss_pred             ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      .+...+....++.|++++++|++++++...+..+|..+++++++++.+..+||+.|++.+++.++..+..++..||.++ 
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~-  183 (382)
T PRK10091        105 HGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD-  183 (382)
T ss_pred             hHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc-
Confidence            9998888889999999999999999999999999999999999999998999999999998887777666666666321 


Q ss_pred             CCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHH
Q 008957          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                           +.+..                                        .  +   +. .+.++++..+......++..
T Consensus       184 -----~~~~~----------------------------------------~--~---~~-~~~~~~~~~~~~~~~~~~~~  212 (382)
T PRK10091        184 -----EAKGG----------------------------------------L--R---EQ-FHFLRSPAPWLIFAATMFGN  212 (382)
T ss_pred             -----ccccC----------------------------------------H--H---HH-HHHhcChHHHHHHHHHHHHH
Confidence                 00000                                        0  0   01 12345666665554444444


Q ss_pred             HHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHH-Hhh
Q 008957          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-CLS  421 (547)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  421 (547)
                      ........+.+.++.+..+.++... .+..+..++.+++.++.+++.||+++|     +.+.....+..+..++.. ..+
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~-----~~~~~~~~~~~i~~~~~~~~~~  287 (382)
T PRK10091        213 AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL-----RIAAVTDFIIVLALLMLFFFGG  287 (382)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch-----hHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444555666666566665443 445677788999999999999999988     455544444444333332 233


Q ss_pred             hHHHHHHHHHHHHHHHhhcCccceeeeeccc-CCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHH
Q 008957          422 SLYGFLALFTVGELLVFATQAPVNYVCLHSV-KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  500 (547)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  500 (547)
                      +.+...+..++.+.+.....++......+.. +++.++.+.  .+...+. |.++||.+.|++.|..++|+..+.+.+++
T Consensus       288 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~  364 (382)
T PRK10091        288 MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNL-GSAIGAYCGGMMLTLGLAYNYVALPAALL  364 (382)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHH-HHHHHHHHhHHHHHcccCcchHHHHHHHH
Confidence            3333334444444443333333332333333 345555543  3445555 88999999999999777788888887776


Q ss_pred             HHHHHHHHHH
Q 008957          501 FFLAAGIWFV  510 (547)
Q Consensus       501 ~~~~~~~~~~  510 (547)
                      .++.......
T Consensus       365 ~~~~~~~~~~  374 (382)
T PRK10091        365 SFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHHH
Confidence            6665555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=1.9e-34  Score=281.47  Aligned_cols=338  Identities=14%  Similarity=0.097  Sum_probs=252.5

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      .+|.+.+++|+++++.|+..+++.++..+++++.|+++||+|||++++.+.++.+++.+++++++|++.+++.|+++|++
T Consensus        42 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  121 (394)
T PRK10213         42 LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLA  121 (394)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHh
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      .+...+...+++.|++|+++|++++++...+.++|.++||++++++.+++|||+.|++.++++++..+......||.++ 
T Consensus       122 ~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~-  200 (394)
T PRK10213        122 LGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG-  200 (394)
T ss_pred             hHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc-
Confidence            9999999999999999999999999999999999999999999999999999999999987776655544444454210 


Q ss_pred             CCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHH
Q 008957          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                          ++++ .                                              .+..+..+++|.++...+..++..
T Consensus       201 ----~~~~-~----------------------------------------------~~~~~~~l~~~~~~~~~~~~~~~~  229 (394)
T PRK10213        201 ----EPSH-Q----------------------------------------------KQNTFRLLQRPGVMAGMIAIFMSF  229 (394)
T ss_pred             ----cccc-c----------------------------------------------hhHHHHHhcCHHHHHHHHHHHHHH
Confidence                0000 0                                              011345677888887766655555


Q ss_pred             HHHHHHhhhc-cceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008957          344 FVIGAYSYWG-PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  421 (547)
Q Consensus       344 ~~~~~~~~~~-p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (547)
                      ........+. |.|.+ ..+.+.... .......++++++.++.+++.||.+++     ..+..........+++....+
T Consensus       230 ~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-----~l~~~~~~~~~~~~~l~~~~~  303 (394)
T PRK10213        230 AGQFAFFTYIRPVYMN-LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-----ALAGAPLVLAVSALVLTLWGS  303 (394)
T ss_pred             HHHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-----HHHHHHHHHHHHHHHHHHHhh
Confidence            5555555555 55554 456665443 444556678888888889988885433     333333332333333333444


Q ss_pred             hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHH
Q 008957          422 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  501 (547)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  501 (547)
                      +.+......++.+++.+...+.....+.+..| +.++++.+......+. |..+||.+.|++.|..| +...+...+++.
T Consensus       304 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l-g~~~G~~l~G~l~~~~g-~~~~~~~~~~~~  380 (394)
T PRK10213        304 DKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQL-ANTCGAAIGGYALDNIG-LTSPLMLSGTLM  380 (394)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hhhHHHHHHHHH
Confidence            55555556666777776666666666777665 4566777766555665 88899999999999876 545555555443


Q ss_pred             H
Q 008957          502 F  502 (547)
Q Consensus       502 ~  502 (547)
                      +
T Consensus       381 ~  381 (394)
T PRK10213        381 L  381 (394)
T ss_pred             H
Confidence            3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=2.5e-34  Score=276.90  Aligned_cols=371  Identities=13%  Similarity=0.029  Sum_probs=278.3

Q ss_pred             CchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCcccccccccc-ccccCccchhHHHHHHHHHHhhhhhhhhhh
Q 008957           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASL  140 (547)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l  140 (547)
                      ..|+.+.+..+.+.+.+.....++.                 ..+.+.+ |+|+|.+|.+++.+++.+++.++.++.|++
T Consensus        31 ~a~r~l~~s~~~f~~~F~~w~~~~~-----------------l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l   93 (462)
T PRK15034         31 IARRNLWISVSCLLLAFCVWMLFSA-----------------VTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFM   93 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777788888888888888775                 3366665 899999999999999999999999999999


Q ss_pred             hhhcCCceehHHHHHHHHHHHHhhhcc-----ccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhh
Q 008957          141 AKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI  215 (547)
Q Consensus       141 ~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  215 (547)
                      .||+|.|+++.++.++.++.+++.+++     +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....
T Consensus        94 ~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G  172 (462)
T PRK15034         94 VPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLG  172 (462)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHH
Confidence            999999999999999999999999987     8999999999999998 6688999999999999999999999998777


Q ss_pred             hhhhhhhhhhHHhhc------------------CCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccc
Q 008957          216 PTGVALGYVYGGVVG------------------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS  277 (547)
Q Consensus       216 ~~G~~~g~~l~~~l~------------------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  277 (547)
                      ++|..+++++...+.                  +..+||..+++..++.++..++.+++.++.+.      ++..     
T Consensus       173 ~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------~~~~-----  241 (462)
T PRK15034        173 NLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------SRAS-----  241 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc------cccC-----
Confidence            777776666554322                  13458888888888888777777776544211      0000     


Q ss_pred             cccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhcccee
Q 008957          278 VSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAG  357 (547)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  357 (547)
                                                                .++.+..+|+|..|...+.+++.+..+.++.+++|.|.
T Consensus       242 ------------------------------------------~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~  279 (462)
T PRK15034        242 ------------------------------------------IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLA  279 (462)
T ss_pred             ------------------------------------------HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                      13456788999999999999999999999999999998


Q ss_pred             EeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHH-HHHh-----hhHHHHHHHHH
Q 008957          358 YNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT-AFCL-----SSLYGFLALFT  431 (547)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~  431 (547)
                      ++.+... .......+..+...+.++++|+++||+|++     +++..+.....+.... ....     .+.+...+.+.
T Consensus       280 ~~~~~~~-~~l~~~~l~~l~~~l~rplgG~LADRiG~~-----~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~  353 (462)
T PRK15034        280 KTQFPDV-NILRLAFFGPFIGAIARSVGGAISDKFGGV-----RVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFM  353 (462)
T ss_pred             HHHcChH-HHHHHHHHHHHHHHHHHHhhHHHHHhcCch-----HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            7755321 111223344577788899999999999998     5555444433333221 1111     13344444444


Q ss_pred             HHHHHHhhcCccceeeeecccCC---------------------cchhHHHHHHHHHHHhhcCCCccchhhhhhcccchh
Q 008957          432 VGELLVFATQAPVNYVCLHSVKP---------------------SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  490 (547)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~  490 (547)
                      ...++.+......+-.+...+|+                     ++.|.+.|+....... |+++-|.+.|...+.+|++
T Consensus       354 ~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~-Ggf~~p~~~g~~~~~~g~~  432 (462)
T PRK15034        354 GLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAV-GGFFIPQAFGMSLNMTGSP  432 (462)
T ss_pred             HHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHc-ccchhhHHHHHHHHHcCCc
Confidence            44455556666666566555542                     1567888888666666 7788898999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 008957          491 RKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~  510 (547)
                      ...++.+.+..+++.++...
T Consensus       433 ~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        433 VGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999988888777766554

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1e-34  Score=284.45  Aligned_cols=373  Identities=12%  Similarity=0.055  Sum_probs=275.4

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  142 (547)
                      ++++...+++.++....+...++.                 .+|.+.+++|+|..+.+++.+.+.+++.+++++.|++.|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~-----------------~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d   67 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGM-----------------VMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLME   67 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh-----------------hhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777778777777666664                 458999999999999999999999999999999999999


Q ss_pred             hcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhh
Q 008957          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG  222 (547)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  222 (547)
                      |+|||++++.+.++.+++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..++
T Consensus        68 r~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~  147 (394)
T PRK03699         68 IIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIF  147 (394)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHhhc-CCCCchhHHHHHHHHHHHHHHHHHhhc-cCccCCCCCCCccccccccccccCCcCCCCCcccccccccchh
Q 008957          223 YVYGGVVG-SHLNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQAS  300 (547)
Q Consensus       223 ~~l~~~l~-~~~gwr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (547)
                      |.+.+.+. ...|||+.|++.+++.++..++.++.. |+       +++++..   +        .      +       
T Consensus       148 ~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~---~--------~------~-------  196 (394)
T PRK03699        148 PIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFSEFPA-------LGKHAPK---A--------D------K-------  196 (394)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhcCCcc-------ccccCcc---c--------c------C-------
Confidence            99888765 457999999998887776655443321 11       0000000   0        0      0       


Q ss_pred             hhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhccccc
Q 008957          301 ERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGI  379 (547)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~  379 (547)
                          +                ..+. ..++.++...+..++.....+.+..|.|.|+++.++.+.... .+.....++.+
T Consensus       197 ----~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~  255 (394)
T PRK03699        197 ----P----------------VAKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYM  255 (394)
T ss_pred             ----c----------------cccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHH
Confidence                0                0000 013455666666667767777888999999988778776443 44556677889


Q ss_pred             ccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhH
Q 008957          380 VGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL  459 (547)
Q Consensus       380 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  459 (547)
                      +++++.+++.||+++|     +.+.....+....+.+....++.+...+..++.+++.+..++.......+.. ++.+++
T Consensus       256 ig~~~~g~l~dr~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~  329 (394)
T PRK03699        256 VGMWIFSFIVRFFDLQ-----RILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-KVASPK  329 (394)
T ss_pred             HHHHHHHHHHHHhchh-----hHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCHH
Confidence            9999999999999998     4554444444443333333444444444555566655555555444444444 445677


Q ss_pred             HHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008957          460 SMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  512 (547)
Q Consensus       460 ~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (547)
                      ..+......+. |..++|.+.|++.+..| +...+++.+++.+++.++.....
T Consensus       330 ~~g~~~~~~~~-g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        330 LVNFILTCGTI-GTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHHhhhH-HHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHHH
Confidence            77887766665 88999999999999876 66777777777666655544433

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1.5e-34  Score=286.45  Aligned_cols=380  Identities=11%  Similarity=0.075  Sum_probs=257.7

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCcccccc-cccccc--ccCccchhHHH-----HHHHHHHhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGS-GIQGDF--KLNNFQDGVLS-----SAFMVGLLVAS  134 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~i~~~~--~~s~~~~g~~~-----s~~~~~~~~~~  134 (547)
                      +++.+...++.++++++|...++...                 | .+.+++  +.++. .+++.     ++..++..+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~   81 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITA-----------------ALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGG   81 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHH
Confidence            35677788889999999999887521                 3 345555  56655 46554     34556778999


Q ss_pred             hhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHH--------HHHHHHHHhhhhhhhhhhcccccccccCCCCCcch
Q 008957          135 PIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA  206 (547)
Q Consensus       135 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~  206 (547)
                      ++.|+++||+|||++++++.++++++++++++++|++        .++++|+++|++.|..++....++.|++|+++|++
T Consensus        82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~  161 (438)
T PRK09952         82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF  161 (438)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence            9999999999999999999999999999999999987        58889999999999999999999999999999999


Q ss_pred             hhhHHHHhhhhhhhhhhhhHHhhc--------CCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCcccccccccc
Q 008957          207 WLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV  278 (547)
Q Consensus       207 ~~~~~~~~~~~G~~~g~~l~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  278 (547)
                      ..+..+.+..+|.+++..+...+.        ..+|||+.|++.+++.++. +......||+++.....++.+       
T Consensus       162 ~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~-------  233 (438)
T PRK09952        162 YSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQA-------  233 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcc-------
Confidence            999999999999999887766554        3579999999887765432 222222344321100000000       


Q ss_pred             ccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHH-HHHHHHHHHHHHhhhcccee
Q 008957          279 SEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL-GYIAYNFVIGAYSYWGPKAG  357 (547)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~  357 (547)
                             +                .+++             ....+.++++++.+...+ ..++.....+....|.|.|+
T Consensus       234 -------~----------------~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  277 (438)
T PRK09952        234 -------A----------------AKKR-------------IPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYS  277 (438)
T ss_pred             -------c----------------cccc-------------CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   0                0000             000122345555554433 34455566677778888888


Q ss_pred             EeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH---hh-hHHHHHHHHHH
Q 008957          358 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---LS-SLYGFLALFTV  432 (547)
Q Consensus       358 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~  432 (547)
                      ++..+.+.... ....+..+..+++.++.|+++||++||     +.+..+.++..+..+....   .. ..+..+...++
T Consensus       278 ~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  352 (438)
T PRK09952        278 TQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR-----RVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML  352 (438)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            77777665332 223344566677888899999999998     4444443333322221111   11 22222333344


Q ss_pred             HHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhccc-chhHHHHHHHHHHHHHHHHHHH
Q 008957          433 GELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-NNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      .+++.+...+....+..|.+|++.|+++.|+.+.....+|+.++|.+.+++.+.. ++|...+.+.+++.+++.+..+
T Consensus       353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~  430 (438)
T PRK09952        353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL  430 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            4455555556666777888888999999999776666457788999999998855 3576677766666666555544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=5.4e-35  Score=289.11  Aligned_cols=387  Identities=12%  Similarity=0.073  Sum_probs=271.5

Q ss_pred             CCchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhh
Q 008957           61 FTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASL  140 (547)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l  140 (547)
                      +.+|+.+..+++.++.++++...++.                 ..|.+.+++|++..+.+++.+++.++..+++++.|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l   70 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVAL-----------------VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLW   70 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567888899999999999988875                 4489999999999999999999999999999999999


Q ss_pred             hhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhh
Q 008957          141 AKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA  220 (547)
Q Consensus       141 ~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  220 (547)
                      +||+|||++++++.++.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+
T Consensus        71 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~  150 (405)
T TIGR00891        71 GDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAV  150 (405)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHhhcCCCC--chhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccc
Q 008957          221 LGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (547)
Q Consensus       221 ~g~~l~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (547)
                      +++.+++.+.+..+  ||+.|++.+++.++.. +.....||++...+++++++..                  .+..++.
T Consensus       151 ~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~  211 (405)
T TIGR00891       151 VAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALV------------------RTMVDIL  211 (405)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhh------------------hhHHHHH
Confidence            99999998887666  9999998765554433 3333345532211000000000                  0000000


Q ss_pred             hhhhhcccccchhhhhhhhhhhhhhHhhc-cc-chhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhc
Q 008957          299 ASERSIKSIGESRFLNQLSQFSQDTKVLL-QE-KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI  375 (547)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~  375 (547)
                      ...+...   +    ...++.....+... ++ +.+....+...+..........+.|.|+.+..+.+.... .+.....
T Consensus       212 ~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~  284 (405)
T TIGR00891       212 YGGEHRI---A----NIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSN  284 (405)
T ss_pred             hccchhh---h----hhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHH
Confidence            0000000   0    00000001111111 11 112223333334444455666778888877677765443 4455667


Q ss_pred             ccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCC
Q 008957          376 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA-FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  454 (547)
Q Consensus       376 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (547)
                      ++.+++.++.+++.||+++|     +.+..+..+.....+.. ....+.+...+..++.+++.....+.....+.+..|+
T Consensus       285 ~~~~~g~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (405)
T TIGR00891       285 IGAIVGGCVFGFLGDWLGRR-----KAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT  359 (405)
T ss_pred             HHHHHHHHHHHHHHHHhCch-----hhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCc
Confidence            88899999999999999998     45544444332222222 2223333333443445555555556666777888889


Q ss_pred             cchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHH
Q 008957          455 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  496 (547)
Q Consensus       455 ~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  496 (547)
                      +.|+++.|+.+...+. |..++|.+.|++.|+.|.|...+..
T Consensus       360 ~~~~~~~g~~~~~~~~-g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       360 DQRAAGLGFTYQLGNL-GGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             chhHHHhhHHHHHHHH-HHHHHHHHHHHHHHhccccchhHHh
Confidence            9999999999888877 8889999999999988867554443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.1e-35  Score=283.11  Aligned_cols=373  Identities=18%  Similarity=0.204  Sum_probs=270.6

Q ss_pred             CCCCCchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhh
Q 008957           58 PSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIF  137 (547)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~  137 (547)
                      ..++.+.+++..++..++..+.|+.+++.+.+                ..+.+|.+....+.+++.++|.++++++.+++
T Consensus        38 l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l----------------~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~  101 (495)
T KOG2533|consen   38 LLRKLDLFILPFLCYLYFHAYLDKSSIVNASL----------------SGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPS  101 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhcchhHHH----------------cCCccccchhhhhhhhHHHHHHHHHHHHHhhH
Confidence            34555667788888899999999999987544                55779999999999999999999999999999


Q ss_pred             hhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhh
Q 008957          138 ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT  217 (547)
Q Consensus       138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  217 (547)
                      |.+.||++..+.+....+++++..++.+..+|++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+..++
T Consensus       102 ~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~  181 (495)
T KOG2533|consen  102 GLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASL  181 (495)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcch
Confidence            99999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHhh------cCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccc
Q 008957          218 GVALGYVYGGVV------GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV  291 (547)
Q Consensus       218 G~~~g~~l~~~l------~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (547)
                      |.++|.+++..+      ....||||.|++.|+++++..++.++++|+.+...      +..+++|+             
T Consensus       182 g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~------~fl~~~ek-------------  242 (495)
T KOG2533|consen  182 GNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKA------WFLTDEEK-------------  242 (495)
T ss_pred             hhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhc------cccchHHH-------------
Confidence            999999999886      34679999999999999999999999998855422      11111110             


Q ss_pred             ccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhh-Hhh
Q 008957          292 SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMF  370 (547)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~  370 (547)
                       +...++.++.......     +  +..+..+++.+++|.+|...+..++.....+++.+|+|.|+.+..+.+... ..+
T Consensus       243 -~~~~~~~~~~~~~~~~-----~--~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~l  314 (495)
T KOG2533|consen  243 -ELVVERLRESPSGGIE-----N--KFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLL  314 (495)
T ss_pred             -HHHHHHHHhccCCCcc-----c--ccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccc
Confidence             0000000000000000     0  012356788899999999999999999999999999999999955565434 366


Q ss_pred             hhhhcccccccceeeeeeeeccc----ccchhHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccce
Q 008957          371 GGVTIVCGIVGTISGGFILDQMG----ATISNAFKLLSAAT-FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVN  445 (547)
Q Consensus       371 ~~~~~~~~~~~~~~~g~l~d~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (547)
                      .....++++++.+++|+++||++    +|     ....... +.....++..........................+...
T Consensus       315 s~~~~~~g~v~~i~ag~lsdr~~~~~~~~-----~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (495)
T KOG2533|consen  315 STPYDVGGIVGLILAGYLSDRLKTIFARR-----LLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIAL  389 (495)
T ss_pred             cchHHhhhHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHH
Confidence            77788999999999999999954    33     3333222 23333323333333233333333333333444444455


Q ss_pred             eeeecccCCcc-hhHHHHHHHHHHHhhcCCCccch
Q 008957          446 YVCLHSVKPSL-RALSMAISTVSIHIFGDVPSSPL  479 (547)
Q Consensus       446 ~~~~~~~~~~~-r~~~~g~~~~~~~~~g~~~~~~~  479 (547)
                      ....+...++. +-+..+......+. +++++|.+
T Consensus       390 ~w~s~~~~g~~k~~~~~~~~i~~~~s-~~~~~~~~  423 (495)
T KOG2533|consen  390 SWTSANLAGNTKALTTVSAIIDGTGS-AGAISGQL  423 (495)
T ss_pred             hhccccccchHHhHHHHhhhhcchhH-HHHhhhhh
Confidence            55555555543 33444444344444 33334433

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=8.2e-35  Score=289.20  Aligned_cols=364  Identities=15%  Similarity=0.102  Sum_probs=255.7

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  142 (547)
                      +++.+..+.+.++.+.++....+.                 ..|.+++++|+++.+.+++.+++.+++.++++++|+++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~d   78 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFY-----------------IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLAD   78 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677778888888888887765                 448899999999999999999999999999999999999


Q ss_pred             hcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhh
Q 008957          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG  222 (547)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  222 (547)
                      |+|||++++++.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.+++
T Consensus        79 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~  158 (426)
T PRK12307         79 KFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA  158 (426)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhh
Q 008957          223 YVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASER  302 (547)
Q Consensus       223 ~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (547)
                      +.+.+.+.+..+||+.|++..+..++ .+......||+.+..    +++ .         +....               
T Consensus       159 ~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~----~~~-~---------~~~~~---------------  208 (426)
T PRK12307        159 AYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWE----EAK-L---------SGKGK---------------  208 (426)
T ss_pred             HHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHH----Hhh-h---------hcccc---------------
Confidence            99999999889999999985433222 111111123221100    000 0         00000               


Q ss_pred             hcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHH---HHHHHHHHHhhhccceeEeeccCchhh-Hhhhhhhcccc
Q 008957          303 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI---AYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCG  378 (547)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~  378 (547)
                       ..+       ...+.....++.+++++.++.......   +.......+..++|.|+++. +.+... .....+..++.
T Consensus       209 -~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~  279 (426)
T PRK12307        209 -HSQ-------SAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGT  279 (426)
T ss_pred             -ccc-------cchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Confidence             000       000011124556777777655433222   22223334566788887764 454433 24445667888


Q ss_pred             cccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhcCccceeeeecccCCcc
Q 008957          379 IVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV--FATQAPVNYVCLHSVKPSL  456 (547)
Q Consensus       379 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  456 (547)
                      +++.++.+++.||++||     +.+..+.++..+..++...........+..++.+.+.  .+..+.....+.+.+|++.
T Consensus       280 ~~g~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  354 (426)
T PRK12307        280 VLGNIVWGLCADRIGLK-----KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV  354 (426)
T ss_pred             HHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH
Confidence            99999999999999998     5555554444443333322221111112222222211  1222334455678888899


Q ss_pred             hhHHHHHHHHHHHhhcCCCccchhhhhhcccc
Q 008957          457 RALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  488 (547)
Q Consensus       457 r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  488 (547)
                      |+++.|+.+...+. |..++|.+.|++.+..|
T Consensus       355 ~g~~~g~~~~~~~~-~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        355 RGLGTGLIYNLAAT-SGTFNSMAATWLGITMG  385 (426)
T ss_pred             HhhhhhHHHHHHhH-HHHHHHHHHHHHHHccc
Confidence            99999999888887 88889999999999876

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=9.1e-35  Score=284.87  Aligned_cols=370  Identities=16%  Similarity=0.173  Sum_probs=267.8

Q ss_pred             HHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHH
Q 008957           73 INMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV  152 (547)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~  152 (547)
                      .++..++++..++.                 ..|.+.+++|++..+.|++.+++.++..+++++.|+++||+|||+++++
T Consensus         3 ~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   65 (379)
T TIGR00881         3 GYAAYYLVRKNFAL-----------------AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI   65 (379)
T ss_pred             hhhHHHHhHHhhhh-----------------hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence            45566677777765                 4489999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhh-hhHHhhcC
Q 008957          153 GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY-VYGGVVGS  231 (547)
Q Consensus       153 ~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~l~~~l~~  231 (547)
                      +.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  145 (379)
T TIGR00881        66 GLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE  145 (379)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 57777777


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchh
Q 008957          232 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR  311 (547)
Q Consensus       232 ~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (547)
                      ..+||+.|++.+++.++..++.+++.|+.++....++.++...        +       +.+   ...+.++++      
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------~~~---~~~~~~~~~------  201 (379)
T TIGR00881       146 LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN--------E-------EPD---GDAEKKEEE------  201 (379)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc--------c-------ccc---ccccccccc------
Confidence            8899999999998888777777766666433211111000000        0       000   000000000      


Q ss_pred             hhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeee
Q 008957          312 FLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILD  390 (547)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d  390 (547)
                          .+......+.++++|.++...+..++.......+..+.|.|+++..+.+.... .......++.+++.++.+++.|
T Consensus       202 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  277 (379)
T TIGR00881       202 ----LTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSD  277 (379)
T ss_pred             ----ccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence                00011234567788989888888888888888888899999888777775443 4456667888999999999999


Q ss_pred             cccccchhHHHHHHHHH-HHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHH
Q 008957          391 QMGATISNAFKLLSAAT-FLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVS  467 (547)
Q Consensus       391 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~  467 (547)
                      |..+++.   ..+.... ............  ..+........++.+.+.....+.......+..|++.|+++.|+.+..
T Consensus       278 r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  354 (379)
T TIGR00881       278 KLFNGRR---GPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFF  354 (379)
T ss_pred             HHcCCcc---hHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHh
Confidence            8644321   1221111 111111111111  122333333334444433333344445667888889999999999888


Q ss_pred             HHhhcCCCccchhhhhhcccchhHH
Q 008957          468 IHIFGDVPSSPLVGVLQDHVNNWRK  492 (547)
Q Consensus       468 ~~~~g~~~~~~~~g~l~~~~~~~~~  492 (547)
                      .+. |..++|.+.|.+.|..| |+.
T Consensus       355 ~~~-g~~~~~~~~g~l~~~~g-~~~  377 (379)
T TIGR00881       355 AYL-GGILAGLPLGYLADGFG-WAG  377 (379)
T ss_pred             hhh-hhhhhhhhHHHHHHhhc-ccc
Confidence            777 88899999999999865 544

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=3.3e-34  Score=284.24  Aligned_cols=357  Identities=13%  Similarity=0.083  Sum_probs=241.7

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHH-HHH-----HHHHhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLS-SAF-----MVGLLVASPI  136 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~-s~~-----~~~~~~~~~~  136 (547)
                      +|+....++++.+++++|+.+++.                 ..|.+.+|++.++.+.+.+. +..     .++..+++++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~   75 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGF-----------------YATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIV   75 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence            345788889999999999999986                 44999999999888765443 322     2333578999


Q ss_pred             hhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHH--------HHHHHHHhhhhhhhhhhcccccccccCCCCCcchhh
Q 008957          137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL  208 (547)
Q Consensus       137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~  208 (547)
                      .|+++||+|||+.++.+.+++++++++++++++++.        ++++|+++|++.+...+....+++|++|+++|++++
T Consensus        76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~  155 (434)
T PRK15075         76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT  155 (434)
T ss_pred             HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence            999999999999999999999999999999999874        688999999999999998999999999999999999


Q ss_pred             hHHHHhhhhhhhhhhhhHHhhc--------CCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCcccccccccccc
Q 008957          209 SMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSE  280 (547)
Q Consensus       209 ~~~~~~~~~G~~~g~~l~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  280 (547)
                      ++...+.++|..+++.+++.+.        +.+|||++|++..+...+ ........||.         ++....+ .  
T Consensus       156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~---------~~~~~~~-~--  222 (434)
T PRK15075        156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-IFLIRRSLEET---------EEFLARK-H--  222 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHHhcCCC---------HHHHHhh-h--
Confidence            9999998888888888777652        468999999975433211 11111111211         0000000 0  


Q ss_pred             CCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHH-HHHHHHHHHHHHHHhhhccceeEe
Q 008957          281 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSYWGPKAGYN  359 (547)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~  359 (547)
                                              +        ...+   +.++...+++..+.. .+..++.....+.+..|.|.|+++
T Consensus       223 ------------------------~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  267 (434)
T PRK15075        223 ------------------------R--------PSMR---EIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKT  267 (434)
T ss_pred             ------------------------c--------cccc---cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    0        0000   111222233333332 233334455566788899999988


Q ss_pred             eccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHH-HH-HH-h-hhHHHHHHHHHHHH
Q 008957          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TA-FC-L-SSLYGFLALFTVGE  434 (547)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~-~~~~~~~~~~~~~~  434 (547)
                      ..+.+.... ....+..++++++.++.|+++||++||     +.......+.....+ .. .. . ++.........+.+
T Consensus       268 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (434)
T PRK15075        268 VLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR-----PVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLS  342 (434)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            777765443 444566678889999999999999998     444433322222111 11 11 1 12222222223333


Q ss_pred             HHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccch
Q 008957          435 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  489 (547)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~  489 (547)
                      ++.+...+.......+..|++.|+++.++.+.....+++.++|.+.|++.|..|.
T Consensus       343 ~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        343 FLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             HHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence            4444444444556778888999999999976666654556789999999998763

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=2.1e-34  Score=290.72  Aligned_cols=417  Identities=15%  Similarity=0.095  Sum_probs=263.8

Q ss_pred             CchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccc-----cccCccchhHHHHHHHHHHhhhhhh
Q 008957           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGD-----FKLNNFQDGVLSSAFMVGLLVASPI  136 (547)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~  136 (547)
                      ..++++.++.++.+..++|...++..                 .|.+.++     .+.+..+.+++.+.+.+++.+++++
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~   75 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLV-----------------TKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLF   75 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777788888899998888752                 2444443     3455667899999999999999999


Q ss_pred             hhhhhhhcCCceehHHHHHHHHHHHHhhhcccc------HHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhH
Q 008957          137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM  210 (547)
Q Consensus       137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  210 (547)
                      +|+++||+|||+++.++++++.+++++++++++      ++.++++|+++|++.|...+....+++|++|+++|++++++
T Consensus        76 ~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~  155 (502)
T TIGR00887        76 FGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAA  155 (502)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHH
Confidence            999999999999999999999999999988876      78999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhhHHhhcC-----------------------CCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCC
Q 008957          211 FYMCIPTGVALGYVYGGVVGS-----------------------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  267 (547)
Q Consensus       211 ~~~~~~~G~~~g~~l~~~l~~-----------------------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  267 (547)
                      .+....+|.++++.++..+..                       ..+||+.|.+.++++++..+. .++.||+++....+
T Consensus       156 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~  234 (502)
T TIGR00887       156 VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADV  234 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHh
Confidence            999999999999988765421                       247999998888877655444 45568887753221


Q ss_pred             Ccc-c-cccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcc----cc---hhHHHHHH
Q 008957          268 ESG-K-AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ----EK---VYVVNVLG  338 (547)
Q Consensus       268 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~  338 (547)
                      ++. + ......+....+   .++ +.++.++... +  ++...           .+++++++    ++   ..+.....
T Consensus       235 ~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~~~-~--~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~  296 (502)
T TIGR00887       235 AKDVEQAASDMSAVLQVK---IEA-EPDEVEKAST-A--VEVPK-----------ASWSDFFTHFFKWRHGKHLLGTAGS  296 (502)
T ss_pred             CcchHHHHHHHHHHhccc---ccc-Ccccccchhc-c--ccchh-----------hhHHHHHHHHhhhHHHHHHHHHHHH
Confidence            111 1 110000000000   000 0001000000 0  00000           11222322    11   11222223


Q ss_pred             HHHHHHHHHHHhhhccceeEeeccCchhh-------------HhhhhhhcccccccceeeeeeeecccccchhHHHHHHH
Q 008957          339 YIAYNFVIGAYSYWGPKAGYNIYHMSNAD-------------MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  405 (547)
Q Consensus       339 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  405 (547)
                      .++....+++...|.|.++++. +.+...             .....+..++.+++.+++++++||+|||     +.++.
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR-----~~l~~  370 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILSAI-GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK-----PIQLM  370 (502)
T ss_pred             HHHHHHHHHccccccHHHHHHH-cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch-----hHHHH
Confidence            3344445666777788877653 332110             0122333456677888999999999999     55554


Q ss_pred             HHHHHHHHHHHHHH-hh--hHHHHHHHHHHHHHHHh-hcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhh
Q 008957          406 ATFLGAISCLTAFC-LS--SLYGFLALFTVGELLVF-ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  481 (547)
Q Consensus       406 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g  481 (547)
                      +..+..+.+++... ..  +........++..++.. ...+....+..|.+|++.|+++.|+.+.+.++ |++++|.+.+
T Consensus       371 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~-~~~~~~~~~~  449 (502)
T TIGR00887       371 GFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKA-GAIIGQFGFL  449 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhh-HHHHHHHHhh
Confidence            44443333322222 11  11112222222222222 23344455567888889999999999988887 8888999999


Q ss_pred             hhhcccc---------hhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccchh
Q 008957          482 VLQDHVN---------NWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDG  524 (547)
Q Consensus       482 ~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  524 (547)
                      .+.+..+         ++...+++++++.+++.+..+   ++|| ++++.||.
T Consensus       450 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~---~lpEt~~~~leei  499 (502)
T TIGR00887       450 YLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTL---LIPETKGKSLEEL  499 (502)
T ss_pred             hhhccccccccccccccchHHHHHHHHHHHHHHHHhe---EeccCCCCCHHhh
Confidence            9987431         133566777666665544332   4455 55555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=2.5e-34  Score=290.24  Aligned_cols=419  Identities=15%  Similarity=0.109  Sum_probs=257.2

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCcccccccccccc--------ccCccchhHHHHHHHHHHhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF--------KLNNFQDGVLSSAFMVGLLVAS  134 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~~~~  134 (547)
                      ..+.++++.++.+...+|...++.                 .+|.++++|        ++++.+.+++.+++.++..+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~   72 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISG-----------------TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGG   72 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehH-----------------hHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHH
Confidence            345666677778888888888775                 225555555        8899999999999999999999


Q ss_pred             hhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc------------ccHHHHHHHHHHhhhhhhhhhhcccccccccCCCC
Q 008957          135 PIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP  202 (547)
Q Consensus       135 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  202 (547)
                      +++|+++||+|||++++++.++++++.++++++            ++++.++++|+++|++.|...+...++++|++|++
T Consensus        73 ~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~  152 (479)
T PRK10077         73 ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH  152 (479)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence            999999999999999999999999998887763            22567889999999999999999999999999999


Q ss_pred             CcchhhhHHHHhhhhhhhhhhhhHHhhc--------CCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCcccccc
Q 008957          203 QKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQV  274 (547)
Q Consensus       203 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  274 (547)
                      +|++++++.+.+..+|.++++.+++.+.        +..|||+.|++.+++.++..+. .++.||+++....+++.+.. 
T Consensus       153 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~-  230 (479)
T PRK10077        153 IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQA-  230 (479)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHH-
Confidence            9999999999999999999988776543        4579999999998887776554 45567754321110000000 


Q ss_pred             ccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHH---HHHHHHHHHHHHHHhh
Q 008957          275 VASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN---VLGYIAYNFVIGAYSY  351 (547)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  351 (547)
                      .+.. .+.....   +..+..+              +.....+......+..+........   ....+......+...+
T Consensus       231 ~~~~-~~~~~~~---~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (479)
T PRK10077        231 EGIL-RKIMGNT---LATQALQ--------------EIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLY  292 (479)
T ss_pred             HHHH-HHHcCCh---hHHHHHH--------------HHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHH
Confidence            0000 0000000   0000000              0000000000000111110000110   1111111222334455


Q ss_pred             hccceeEeeccCchh-hHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh--hh-H-HHH
Q 008957          352 WGPKAGYNIYHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SS-L-YGF  426 (547)
Q Consensus       352 ~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~  426 (547)
                      +.|.+.++ .+.+.. .........+..+++.+++++++||++||     +.++.+..+..+..+.....  .+ . ...
T Consensus       293 ~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r-----~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        293 YAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             HHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            66766554 344322 23334455677888899999999999998     56655555544443333221  11 1 122


Q ss_pred             HHHHHHHHHHHhhcC-ccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhh------cccchhHHHHHHHHH
Q 008957          427 LALFTVGELLVFATQ-APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ------DHVNNWRKTTLALTS  499 (547)
Q Consensus       427 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~------~~~~~~~~~~~~~~~  499 (547)
                      ....++.+++....+ +.....+.+.+|++.|+++.|+.+...++ |.++++.+.+.+.      +..+ +...|++.++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~  444 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI-ANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGC  444 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHH-HHHHHHHHhHHHHhccchhhhcc-CccHHHHHHH
Confidence            223333333333333 44566778888889999999999877777 7777765555443      4444 4456666665


Q ss_pred             HHHHHHHHHHHHHhhcc-cccccchhhhhh
Q 008957          500 IFFLAAGIWFVGIFLKS-IDKFNEDGENQI  528 (547)
Q Consensus       500 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  528 (547)
                      ..+++.++.+.  ..+| ++++.+|.++..
T Consensus       445 ~~~~~~~~~~~--~~~e~~~~~~~~~~~~~  472 (479)
T PRK10077        445 MGVLAALFMWK--FVPETKGKTLEEMEALW  472 (479)
T ss_pred             HHHHHHHHHHh--ccccCCCCCHHHHHHHH
Confidence            55544443322  3344 555555554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=1.2e-34  Score=293.58  Aligned_cols=389  Identities=14%  Similarity=0.134  Sum_probs=247.2

Q ss_pred             cccccccccccC--------ccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc---ccHHH
Q 008957          104 SGSGIQGDFKLN--------NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWS  172 (547)
Q Consensus       104 ~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---~~~~~  172 (547)
                      ..+.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||++++++.++++++.+++.++   .+++.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (481)
T TIGR00879        50 ALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEM  129 (481)
T ss_pred             hhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            347777777776        8899999999999999999999999999999999999999999999998543   45668


Q ss_pred             HHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhH---HhhcCCCCchhHHHHHHHHHHHH
Q 008957          173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG---GVVGSHLNWRYAFWGEAILMLPF  249 (547)
Q Consensus       173 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~---~~l~~~~gwr~~f~~~~~~~~~~  249 (547)
                      ++++|+++|++.+...+...+++.|++|+++|++++++++.+..+|..++++++   ....+..+||+.|++.++..++.
T Consensus       130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~  209 (481)
T TIGR00879       130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL  209 (481)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999   77777889999999966655544


Q ss_pred             HHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcc-
Q 008957          250 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ-  328 (547)
Q Consensus       250 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  328 (547)
                      . +..++.||++.....+++.+... +.. .+.....  .+..+..+.............    +..+..+......++ 
T Consensus       210 ~-~~~~~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  280 (481)
T TIGR00879       210 F-LGLFFLPESPRWLVGKGRVEEAR-KSL-ARLRGTS--GEDKELLDELELIDIKRSIEK----RSVQPSWGSLFSSTRR  280 (481)
T ss_pred             H-HHHhcCCCChHHHHHcCChHHHH-HHH-HHHhCCC--CCcHHHHHHHHHHHHHHHHHH----hhccccHHHHHhcCch
Confidence            4 44445566443211111110000 000 0000000  000000000000000000000    000000122222222 


Q ss_pred             --cchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCch-hhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHH
Q 008957          329 --EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  405 (547)
Q Consensus       329 --~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  405 (547)
                        .+.++...+..+........+.++.|.+.++. +.+. ..........++.+++.++++++.||++||     +.+..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----~~~~~  354 (481)
T TIGR00879       281 IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENA-GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR-----PLLLI  354 (481)
T ss_pred             hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHH
Confidence              23333333434433333445566667666543 4443 233445566778889999999999999998     45544


Q ss_pred             HHHHHHHHHHHHHH----hhh------HHHHHHHHHHHHHHHhhcCcc-ceeeeecccCCcchhHHHHHHHHHHHhhcCC
Q 008957          406 ATFLGAISCLTAFC----LSS------LYGFLALFTVGELLVFATQAP-VNYVCLHSVKPSLRALSMAISTVSIHIFGDV  474 (547)
Q Consensus       406 ~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~  474 (547)
                      +..+..+..++...    ..+      ....+....+...+.+....+ ......+..|++.|+++.|+.+...++ |.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l-g~~  433 (481)
T TIGR00879       355 GAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL-ANF  433 (481)
T ss_pred             HHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHH-HHH
Confidence            44433333333221    111      222333333333444434433 344447777889999999999888777 888


Q ss_pred             CccchhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          475 PSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       475 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      ++|.+.+.+.+..+ +...|++.+++.+++.++.+
T Consensus       434 i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~~~  467 (481)
T TIGR00879       434 IVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIFVY  467 (481)
T ss_pred             HHHHHHHHHHHhcC-ccceehhHHHHHHHHHHHHh
Confidence            89999999988765 66778777777666555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=3.1e-34  Score=291.15  Aligned_cols=377  Identities=15%  Similarity=0.124  Sum_probs=258.6

Q ss_pred             ccccccccccccC---ccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHH
Q 008957          103 TSGSGIQGDFKLN---NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML  179 (547)
Q Consensus       103 p~~~~i~~~~~~s---~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  179 (547)
                      +..|.+.+|+|++   ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++++|++.++++|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4568999999999   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      .|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+   ||+.|++.+++.++..+.. ++.||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCC
Confidence            9999999999999999999999999999999999999999999998877654   9999999999887776665 55677


Q ss_pred             ccCCCCCCCccccc-cccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHH
Q 008957          260 QLKGFAPAESGKAQ-VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  338 (547)
Q Consensus       260 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (547)
                      +++....+.+.+.. ...++..+.+....   ..+..+...+++...           +....++++++++|.++...+.
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~  331 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKL---PAEVLSLSLEKDLSS-----------SKKQYSFLDLFRTPNLRKTTLC  331 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCC---CHHHHhhhhhhhhhh-----------ccCCCcHHHHhCChHHHHHHHH
Confidence            65432211111100 00000000000000   000000000000000           0001345677888887776655


Q ss_pred             HHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          339 YIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  418 (547)
Q Consensus       339 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (547)
                      .....+......+..+.+... .+.+  ......+..+..+++.++.+++.||+|||     ..+....++..+.+++..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~i~~~~~~~~l~dr~grr-----~~~~~~~~~~~~~~l~~~  403 (505)
T TIGR00898       332 LMMLWFTTAFSYYGLVLDLGN-LGGN--IYLDLFISGLVELPAKLITLLLIDRLGRR-----YTMAASLLLAGVALLLLL  403 (505)
T ss_pred             HHHHHHHHHHHHHHHhccccc-cCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHH
Confidence            444433332222223333322 2222  12222344567788888999999999998     566665555555554444


Q ss_pred             HhhhH--HHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHH
Q 008957          419 CLSSL--YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  496 (547)
Q Consensus       419 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  496 (547)
                      ..++.  +...+..++.+++....++..+.+..|.+|++.|+++.|+.+....+ |.+++|.+.+ +.+. + +..++.+
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~p~i~~-~~~~-~-~~~~~~~  479 (505)
T TIGR00898       404 FVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARV-GSIISPFLVY-LGEK-W-LFLPLVL  479 (505)
T ss_pred             HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHH-HHHHHhHHHH-HHHH-H-HhhHHHH
Confidence            43322  34444555555666666677777888889999999999999887777 8899998888 4442 3 3466666


Q ss_pred             HHHHHHHHHHHHH
Q 008957          497 LTSIFFLAAGIWF  509 (547)
Q Consensus       497 ~~~~~~~~~~~~~  509 (547)
                      ++++.+++.++.+
T Consensus       480 ~~~~~~~~~~~~~  492 (505)
T TIGR00898       480 FGGLALLAGILTL  492 (505)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666555444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=1.1e-33  Score=278.89  Aligned_cols=357  Identities=12%  Similarity=0.057  Sum_probs=263.9

Q ss_pred             hhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh
Q 008957           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (547)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr  143 (547)
                      +.....+.+..+...++...+.                 |.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr   74 (406)
T PRK15402         12 LLFPLCLVLFEFATYIANDMIQ-----------------PGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR   74 (406)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHh-----------------cchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555666555555544                 35588999999999999999999999999999999999999


Q ss_pred             cCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhh
Q 008957          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (547)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  223 (547)
                      +|||++++++.++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||
T Consensus        75 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~  154 (406)
T PRK15402         75 IGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGP  154 (406)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988888999999999999999999999988889999999


Q ss_pred             hhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhh
Q 008957          224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  303 (547)
Q Consensus       224 ~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (547)
                      .+++.+.++.+||+.|++.++..++..+..++..||+++..+    ++ .                              
T Consensus       155 ~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~------------------------------  199 (406)
T PRK15402        155 LVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVG----EK-L------------------------------  199 (406)
T ss_pred             HHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccc----cc-c------------------------------
Confidence            999999988999999999998888777666665565321100    00 0                              


Q ss_pred             cccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccc
Q 008957          304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGT  382 (547)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  382 (547)
                                 ..++..++++.++++|.++...+..++..........+.|.++.+..+.++... .......++.+++.
T Consensus       200 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~  268 (406)
T PRK15402        200 -----------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGN  268 (406)
T ss_pred             -----------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence                       000112445677889988887777666666566666677888776667765443 22333446778888


Q ss_pred             eeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcch
Q 008957          383 ISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR  457 (547)
Q Consensus       383 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  457 (547)
                      ++.+++.||+++|     +.+..+..+.....++....     .+.+......++.+++.+...+....... ..+++.+
T Consensus       269 ~~~g~l~~r~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~  342 (406)
T PRK15402        269 LTLARLTSRRPLR-----SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSK  342 (406)
T ss_pred             HHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccc
Confidence            9999999999988     44444443333322222211     23333444555566665555554433332 3345899


Q ss_pred             hHHHHHHHHHHHhhcCCCccchhhhhhcccchh
Q 008957          458 ALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  490 (547)
Q Consensus       458 ~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~  490 (547)
                      |+..+..+..... |..+|+.+.+++.+..+.+
T Consensus       343 g~~~~~~~~~~~~-~~~~g~~~~~~l~~~~~~~  374 (406)
T PRK15402        343 GTVSAAMGMLSML-IFTVGIELSKHAYLGGGNG  374 (406)
T ss_pred             cHHHHHHHHHHHH-HHHHHHHHHHhcccCCchH
Confidence            9999999877776 7788999999998887644

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.9e-33  Score=253.70  Aligned_cols=373  Identities=15%  Similarity=0.114  Sum_probs=299.4

Q ss_pred             hhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh
Q 008957           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (547)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr  143 (547)
                      ++.+.+..+...+++.-..+++...                 +.|.+|+|+|+.|.+++.++..+...+..++.|.+.||
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~-----------------~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr   75 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLG-----------------VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR   75 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Confidence            3556666666666666666676533                 77889999999999999999999999999999999999


Q ss_pred             cCCceehHHHHHHHHHHHHhhhccccHH---HHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhh
Q 008957          144 HNPFRLIGVGLSVWTFATAGCGSSFDFW---SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA  220 (547)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a~~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  220 (547)
                      ||.|++..++.++..+-++..+++.+++   ++++.+.+.|++.+ .+.+...++++|+||+++|.++|++. ..++|..
T Consensus        76 fGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~a  153 (417)
T COG2223          76 FGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVA  153 (417)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHH
Confidence            9999999999999999999999886555   99999999999877 67789999999999999999999999 9999999


Q ss_pred             hhhhhHHhhcCCCC---chhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccccccccc
Q 008957          221 LGYVYGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD  297 (547)
Q Consensus       221 ~g~~l~~~l~~~~g---wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (547)
                      +..+++..+....|   ||....+..+..++..++.++...+.+..+...++.+                          
T Consensus       154 v~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~--------------------------  207 (417)
T COG2223         154 VAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL--------------------------  207 (417)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc--------------------------
Confidence            99999999988888   9999999999888888888888755332211110000                          


Q ss_pred             chhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcc
Q 008957          298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV  376 (547)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~  376 (547)
                                          .  ..++.+++++..|.+++.++.....+.++..++|.|+++.++.++... ........
T Consensus       208 --------------------~--~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~  265 (417)
T COG2223         208 --------------------P--AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPL  265 (417)
T ss_pred             --------------------h--hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence                                0  235678899999999999999999999999999999999999997654 55667778


Q ss_pred             cccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHhhcCccceeeee
Q 008957          377 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-------SSLYGFLALFTVGELLVFATQAPVNYVCL  449 (547)
Q Consensus       377 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (547)
                      .+.+.++++|+++||+|.+     +.+......++++..+....       .+.......+.....+.+......+-.+.
T Consensus       266 ~g~l~Rp~GG~LsDR~Gg~-----rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip  340 (417)
T COG2223         266 IGALARPLGGWLSDRIGGR-----RVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIP  340 (417)
T ss_pred             HHHHHHhccchhhhhccch-----hHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeech
Confidence            8888999999999999998     45554444444444333332       34455555566666777777777777766


Q ss_pred             cccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          450 HSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       450 ~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (547)
                      ... +++.|.+.|+.....++ |+..-|...|...+.+|++...|+++..+.+++.+....
T Consensus       341 ~if-~~~~G~v~G~vga~G~l-GGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         341 VIF-PKETGAVTGIVGAIGGL-GGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             HHH-HhhhhHHHHHHHHhccc-cccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            654 56788999998766666 777779999999999998989999888887776665543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3e-34  Score=278.53  Aligned_cols=368  Identities=15%  Similarity=0.176  Sum_probs=281.5

Q ss_pred             ccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc--cHHHHHHHHHHhhhhhhh
Q 008957          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEAS  186 (547)
Q Consensus       109 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~~~  186 (547)
                      ..++++|+.+.+++.++++.|+.+++++.|+++||||.|+++..+.++.++++++...+-  +++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            568999999999999999999999999999999999999999999999999999988764  556789999999999999


Q ss_pred             hhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC-CCchhHHHHHHHHHHHHHHHHHhhccCccCCCC
Q 008957          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (547)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (547)
                      .+|+...+.+.|.|++||++..++..++..+|.+++.+++|++.+. +||+++|++.++.+++..++++++..|.+.   
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~---  221 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS---  221 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc---
Confidence            9999999999999999999999999999999999999999999988 999999999999999999988888755332   


Q ss_pred             CCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHH
Q 008957          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (547)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (547)
                         +++...++|+              +.+++....++.+.           ....+++.+++++.+|...+..++.++.
T Consensus       222 ---~h~~is~~El--------------~~I~~~k~~~~~~~-----------~~~vP~~~i~ts~~vwai~~~~f~~~~~  273 (466)
T KOG2532|consen  222 ---KHPNISEKEL--------------KYIEKGKSEAHVKK-----------KPPVPYKAILTSPPVWAIWISAFGGNWG  273 (466)
T ss_pred             ---cCCCCCHHHH--------------HHHHhcccccccCC-----------CCCCCHHHHHcCHHHHHHHHHHHHHHHH
Confidence               2222211111              11111111111110           0125689999999999999999999999


Q ss_pred             HHHHhhhccceeEeeccCchhh-Hhhhhhhcccccccceeeeeeeecccccc---hhHHHHHHHH-HHHHHHHHHHHHHh
Q 008957          346 IGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATI---SNAFKLLSAA-TFLGAISCLTAFCL  420 (547)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~  420 (547)
                      .+.+..|.|.|+++..+.+... ..+.+++.+...+..+++|.++||+.+|.   ...+++.-.. ....++.++.+.+.
T Consensus       274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~  353 (466)
T KOG2532|consen  274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT  353 (466)
T ss_pred             HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence            9999999999999999999644 46778999999999999999999997751   1123444333 33333333333333


Q ss_pred             h--hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc--ccchhHHHHHH
Q 008957          421 S--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD--HVNNWRKTTLA  496 (547)
Q Consensus       421 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~--~~~~~~~~~~~  496 (547)
                      +  +.+..++++.+...+.+.. ............|++.+..+|+.+....+ ..+++|.+.|.+..  ....|+..|++
T Consensus       354 ~~~~~~~a~~~l~~~~~~~g~~-~~Gf~~~~~~~apq~a~~l~g~~~~~~~~-~~~~~P~~vg~~~~~~t~~eW~~VF~i  431 (466)
T KOG2532|consen  354 SDEHRLLAVILLTIAIGLSGFN-ISGFYKNHQDIAPQHAGFVMGIINFVGAL-AGFIAPLLVGIIVTDNTREEWRIVFLI  431 (466)
T ss_pred             CCCcchHHHHHHHHHHHHcccc-hhhhHhhhhhccchHHHHHHHHHHHHHHH-HHHHHHHheeeEeCCCCHHHHHHHHHH
Confidence            3  2223333333332333322 22333333333688999999999988888 66889999999984  23479999999


Q ss_pred             HHHHHHHHHHHHH
Q 008957          497 LTSIFFLAAGIWF  509 (547)
Q Consensus       497 ~~~~~~~~~~~~~  509 (547)
                      .+++.+++.+++.
T Consensus       432 ~a~i~~~~~i~f~  444 (466)
T KOG2532|consen  432 AAGILIVGNIIFL  444 (466)
T ss_pred             HHHHHHHhchhee
Confidence            9988888776554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=2.8e-33  Score=277.93  Aligned_cols=396  Identities=13%  Similarity=0.067  Sum_probs=269.7

Q ss_pred             hhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh
Q 008957           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (547)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr  143 (547)
                      +..+..+++.+...+.++..+..                 ..|.+++ +|++.++.+++.+++.++..+++++.|+++||
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr   87 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFAL-----------------AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR   87 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHh-----------------hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc
Confidence            44556666777777777776654                 2366665 59999999999999999999999999999999


Q ss_pred             cCCceehHHHHHHHHHHHHhhhcc----ccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhh
Q 008957          144 HNPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV  219 (547)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  219 (547)
                      +|||+.++++.++.+++.++.++.    ++++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+.++|.
T Consensus        88 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~  167 (438)
T TIGR00712        88 SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGG  167 (438)
T ss_pred             cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHh
Confidence            999999999999999998887764    5678888999999999999888889999999999999999999999999999


Q ss_pred             hhhhhhHHhh-cCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccc
Q 008957          220 ALGYVYGGVV-GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (547)
Q Consensus       220 ~~g~~l~~~l-~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (547)
                      .+++.+.+.. ..+.+||+.|++.++++++..++.+++.||.++....++.++.     +.   +...   +..+    .
T Consensus       168 ~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~---~~~~----~  232 (438)
T TIGR00712       168 GIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY-----RN---DYPD---DYNE----K  232 (438)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc-----cc---cccc---cccc----c
Confidence            9988877654 3457899999999999888777777777764332110000000     00   0000   0000    0


Q ss_pred             hhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhccc
Q 008957          299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVC  377 (547)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~  377 (547)
                          .+++       ...++  ...+.+++++.++...+..++.....+++.+|.|.|+++..+.+.... ....+..++
T Consensus       233 ----~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~  299 (438)
T TIGR00712       233 ----AEQE-------LTAKE--IFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYA  299 (438)
T ss_pred             ----cccc-------cchHH--HHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHH
Confidence                0000       00000  011346788999988887777777777888899999998777765443 444566678


Q ss_pred             ccccceeeeeeeecccccchhHHHHHHHHHH-HHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhcCccceeeeecccCC
Q 008957          378 GIVGTISGGFILDQMGATISNAFKLLSAATF-LGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  454 (547)
Q Consensus       378 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (547)
                      ++++.+++|++.||+++++.   ........ ......+.....  .+.+......++.+++.............+..|+
T Consensus       300 ~~ig~~~~g~l~dr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  376 (438)
T TIGR00712       300 GIPGTLLCGWMSDKVFKGNR---GATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK  376 (438)
T ss_pred             HHHHHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh
Confidence            89999999999999965421   11111111 111111111111  1222222222222222211111112235577788


Q ss_pred             cchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          455 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       455 ~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      +.|+++.|+.+...+..|.+++|.+.|.+.|+.| |...+++..++.+++.+..+
T Consensus       377 ~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       377 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             hheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHHHH
Confidence            9999999999877777345689999999999876 77888777776666555544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=4.4e-33  Score=274.15  Aligned_cols=363  Identities=13%  Similarity=0.100  Sum_probs=252.2

Q ss_pred             hHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccc-cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh
Q 008957           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (547)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr  143 (547)
                      +-+..+++..++..++.....                 |.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~-----------------~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr   77 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPL-----------------AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT   77 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc
Confidence            344555566666555544433                 23354 678999999999999999999999999999999999


Q ss_pred             cCCceehHHHHHHHHHHHHhhhcc--------ccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhh
Q 008957          144 HNPFRLIGVGLSVWTFATAGCGSS--------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI  215 (547)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~a--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  215 (547)
                      +|||++++.+.++++++.+++.++        .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+.
T Consensus        78 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  157 (399)
T PRK05122         78 LGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIAT  157 (399)
T ss_pred             cCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhh
Confidence            999999999999988877665543        257789999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccccccc
Q 008957          216 PTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI  295 (547)
Q Consensus       216 ~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (547)
                      .+|.++|+.+++.+.++.|||+.+++.++..++..+.. ...|+..     +++++ .                      
T Consensus       158 ~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~-~----------------------  208 (399)
T PRK05122        158 YGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRPAVP-----PVKGE-R----------------------  208 (399)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCCCCC-----CCCcc-c----------------------
Confidence            99999999999999999999999888766544332221 1111100     00000 0                      


Q ss_pred             ccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhc
Q 008957          296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI  375 (547)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  375 (547)
                                               .++++.++  ..+.......+..........+.|.|+.+. +.+.. ........
T Consensus       209 -------------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~  259 (399)
T PRK05122        209 -------------------------LPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAAR-GWDGA-ALALTLFG  259 (399)
T ss_pred             -------------------------hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccc-hHHHHHHH
Confidence                                     00011111  111111112222333444455566665543 22222 22234556


Q ss_pred             ccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCc
Q 008957          376 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS  455 (547)
Q Consensus       376 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (547)
                      ++.+++.++.+++.||+++|     +.+..+..+.....++....++.+..++..++.+++.+..++.......+..|++
T Consensus       260 ~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  334 (399)
T PRK05122        260 VAFVGARLLFGNLINRLGGL-----RVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ  334 (399)
T ss_pred             HHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH
Confidence            77788889999999999987     5555544444444444444455555555666677766666666556667788889


Q ss_pred             chhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          456 LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       456 ~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      .|+++.|+.+...+. |..++|.+.|++.+..| |+..+++.+++.+++.++..
T Consensus       335 ~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (399)
T PRK05122        335 NRGAALGAYSVFLDL-SLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTW  386 (399)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHH
Confidence            999999999877777 77778889999999865 88888887777666555444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=1.4e-32  Score=269.93  Aligned_cols=349  Identities=10%  Similarity=0.021  Sum_probs=247.3

Q ss_pred             ccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHh
Q 008957          101 ICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV  180 (547)
Q Consensus       101 ~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  180 (547)
                      +.|++|.+.++++.+..+.++..+++.+++.++++++|+++||+|||++++.+.++++++++++++++|++.++++|+++
T Consensus        35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  114 (413)
T PRK15403         35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQ  114 (413)
T ss_pred             hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCc
Q 008957          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  260 (547)
                      |++.+...+...+++.|++|+++|+++++++.....+|..+||++++.+.++.|||+.|++.+++.++..+..++..||+
T Consensus       115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~  194 (413)
T PRK15403        115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPET  194 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99998777777888999999999999999999999999999999999999888999999999988887766656656764


Q ss_pred             cCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHH
Q 008957          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (547)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (547)
                      ++.    ++++ .                                         ..++.+++++.++++|.++...+..+
T Consensus       195 ~~~----~~~~-~-----------------------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~  228 (413)
T PRK15403        195 VKR----GAVP-F-----------------------------------------SAKSVLRDFRNVFRNRLFLTGAATLS  228 (413)
T ss_pred             ccc----cCCC-C-----------------------------------------ChHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            321    0000 0                                         00011245677889999999888877


Q ss_pred             HHHHHHHHHhhhccceeEeeccCchhhHh-hhhhhcccccccceeeeeee-ecccccchhHHHHHHHHHHHHHHHHHHH-
Q 008957          341 AYNFVIGAYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFIL-DQMGATISNAFKLLSAATFLGAISCLTA-  417 (547)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~-  417 (547)
                      +.......+..+.|.++++.++.+..... .......+.+++..+.+.+. |+.++|...   .......++....... 
T Consensus       229 ~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~~~~~~~ig~~l~~~~~  305 (413)
T PRK15403        229 LSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIW---RAVPIQLVGLALLIVGN  305 (413)
T ss_pred             HHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHH---HHHHHHHHHHHHHHHHH
Confidence            77777778888899999988888765543 23334455566556666554 443333110   0000111111111111 


Q ss_pred             -HHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHH
Q 008957          418 -FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  496 (547)
Q Consensus       418 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  496 (547)
                       ...++.+..++..++.+.+.+...+....... .-.+..+|++.++.+..... +..+++...+++.+...  ..++..
T Consensus       306 ~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~-~~~~~~~~~g~~~~~~~--~~~~~~  381 (413)
T PRK15403        306 LLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILM-VMAVSVEIGRWLWFNGG--RLPFHL  381 (413)
T ss_pred             HHccccHHHHHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHcCC--chHHHH
Confidence             11222222344555556666666555543221 11223478888888777766 55667878888877622  345555


Q ss_pred             HHHHHH
Q 008957          497 LTSIFF  502 (547)
Q Consensus       497 ~~~~~~  502 (547)
                      .+++..
T Consensus       382 ~~~~~~  387 (413)
T PRK15403        382 LAVVAG  387 (413)
T ss_pred             HHHHHH
Confidence            554433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=7.7e-33  Score=271.71  Aligned_cols=329  Identities=17%  Similarity=0.178  Sum_probs=250.5

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhh
Q 008957          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (547)
Q Consensus       103 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (547)
                      |..|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|+
T Consensus        26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  105 (385)
T TIGR00710        26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAF  105 (385)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccC
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (547)
                      +.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.++.+||+.|++.++..++..+..++..||.++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       106 GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999988999999999998888777776666665321


Q ss_pred             CCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHH
Q 008957          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (547)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (547)
                      ..+    ++ .                                          .++.++.++..+++|.++...+.....
T Consensus       186 ~~~----~~-~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (385)
T TIGR00710       186 YEA----RI-Q------------------------------------------ISTYFETFLLLLKSKMFWGYALIYGAS  218 (385)
T ss_pred             Ccc----cC-C------------------------------------------HHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence            100    00 0                                          000113455677888888877776666


Q ss_pred             HHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh-
Q 008957          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-  420 (547)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  420 (547)
                      .........+.|.++++..+.++... .+.....++.+++.++.+++.||+++|     +.+..+..+..+..++.... 
T Consensus       219 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  293 (385)
T TIGR00710       219 FGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-----SLLRMGLILFAVSAVLLEITA  293 (385)
T ss_pred             HHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            66777778888888877777765443 444556788899999999999999988     44443333333322222211 


Q ss_pred             ----hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc
Q 008957          421 ----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  485 (547)
Q Consensus       421 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~  485 (547)
                          ..........++.+++.+...+.......+.. |+.++++.++.+...+..|.+.+| +.+.+.+
T Consensus       294 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~i~~~-~~~~~~~  360 (385)
T TIGR00710       294 ILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDF-PHVAGTASALFGTLRLVLGAIVGY-LVSLIHG  360 (385)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cccchHHHHHHHHHHHHHHHHHHH-HHHhccc
Confidence                12223333344555555555555555556655 467999999998888776766655 4554444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=6.3e-33  Score=274.33  Aligned_cols=365  Identities=10%  Similarity=-0.005  Sum_probs=260.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhh-----ccccHHHHHHHHHHh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-----SSFDFWSIAICRMLV  180 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~a~~~~~l~~~r~l~  180 (547)
                      |.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++.+     ..++++.+++.|++.
T Consensus        41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  120 (417)
T PRK10489         41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWD  120 (417)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            778888988999999999999999999999999999999999999999888887766543     257889999999999


Q ss_pred             hhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCc
Q 008957          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  260 (547)
                      |++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+..+|||.|++.++..++..++.+ ..|+.
T Consensus       121 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~  199 (417)
T PRK10489        121 GFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-RLPAL  199 (417)
T ss_pred             HHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence            99999888989999999999999999999999999999999999999998888999999998877665554443 33442


Q ss_pred             cCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHH
Q 008957          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (547)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (547)
                      ++..   ++++                                          +..++..+.++.++++|.++...+..+
T Consensus       200 ~~~~---~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (417)
T PRK10489        200 PPPP---QPRE------------------------------------------HPLRSLLAGFRFLLASPVVGGIALLGG  234 (417)
T ss_pred             CCCC---cccc------------------------------------------cchHHHHHHHHHHHcChHHHHHHHHHH
Confidence            2110   0000                                          000011133455677777666555444


Q ss_pred             HHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008957          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (547)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (547)
                      +... ...+..+.|.|.++..+.+.... .+.....++.+++.++.+++.||.+++     +.+..+..+..+..++...
T Consensus       235 ~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~-----~~l~~~~~~~~~~~~~~~~  308 (417)
T PRK10489        235 LLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG-----LLMLLSTLGSFLAVGLFGL  308 (417)
T ss_pred             HHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc-----hHHHHHHHHHHHHHHHHHc
Confidence            3332 34567788989888777765433 444566688888999999999886555     4444444444444444434


Q ss_pred             hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHH
Q 008957          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  499 (547)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  499 (547)
                      .++.+...+..++.+++.+...+.......+..|++.||++.|+.+...+. |..+||.+.|++.+..| +...+...++
T Consensus       309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~l~G~l~~~~g-~~~~~~~~~~  386 (417)
T PRK10489        309 MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVT-GDAIGAALLGGLGAMMT-PVASASASGF  386 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh-hHhHHHHHHHHHHHHhc-hhhHHHHHHH
Confidence            455555555555666655555555566777888889999999999877776 88999999999999876 4456665555


Q ss_pred             HHHHHHHHHHHHHhhcc-cccccchhhh
Q 008957          500 IFFLAAGIWFVGIFLKS-IDKFNEDGEN  526 (547)
Q Consensus       500 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~  526 (547)
                      +.++..++...  ..++ |+++.+|.++
T Consensus       387 ~~~~~~~~~~~--~~~~~~~~~~~~~~~  412 (417)
T PRK10489        387 GLLIIGVLLLL--VLGELRRFRQTPPEV  412 (417)
T ss_pred             HHHHHHHHHHH--hcccccccccccccC
Confidence            54443333322  2333 4444444443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=1.1e-33  Score=275.76  Aligned_cols=336  Identities=16%  Similarity=0.103  Sum_probs=260.9

Q ss_pred             ccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc-----cHHHHHHHHHH
Q 008957          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-----DFWSIAICRML  179 (547)
Q Consensus       105 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-----~~~~l~~~r~l  179 (547)
                      +|.+..+++.+..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++.++..+++     |++.+++.|++
T Consensus        22 ~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  101 (365)
T TIGR00900        22 LPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGI  101 (365)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            3778888999999999999999999999999999999999999999999999999998888877     99999999999


Q ss_pred             hhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      .|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+..|||+.|++.++..++..+..++..++
T Consensus       102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  181 (365)
T TIGR00900       102 LAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIP  181 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999998999999999887766655544443321


Q ss_pred             ccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHH
Q 008957          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (547)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (547)
                      ..+.   +++++ .                      ++                +..++..+.++.++++|.++...+..
T Consensus       182 ~~~~---~~~~~-~----------------------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (365)
T TIGR00900       182 ELAA---SEIQA-L----------------------SN----------------AVLRDTREGIKFVLKNPLLRTLLLLA  219 (365)
T ss_pred             cCCC---ccccc-c----------------------ch----------------hHHHHHHhHHHHHHcCcHHHHHHHHH
Confidence            1100   00000 0                      00                00011123456677888888877777


Q ss_pred             HHHHHHHHHHh-hhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHH
Q 008957          340 IAYNFVIGAYS-YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (547)
Q Consensus       340 ~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (547)
                      ++......... .+.|.+.++..+.+.... .......++.+++.++.+++.||.+++     +.+..+..+....+...
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~  294 (365)
T TIGR00900       220 LLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----ALMTGAIFVIGLAILVV  294 (365)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----HHHHHHHHHHHHHHHHH
Confidence            77666666665 788888877666665443 444566778888899999999999887     55554444444444444


Q ss_pred             HHhhh-HHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccc
Q 008957          418 FCLSS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  488 (547)
Q Consensus       418 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  488 (547)
                      ...++ .+...+..++.+++.+...+.......+.+|++.|+++.|+.+...+. +..++|.+.|++.|..|
T Consensus       295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       295 GLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHA-AWPLGLILAGPLADHLG  365 (365)
T ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            33342 555566667777777777777788888989999999999999888887 88889999999988643

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=1.5e-33  Score=285.35  Aligned_cols=396  Identities=14%  Similarity=0.156  Sum_probs=284.7

Q ss_pred             hHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc
Q 008957           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH  144 (547)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~  144 (547)
                      +.+..+++..++..+|....+.                 .+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~   64 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNV-----------------AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF   64 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            4566777788888888887775                 44999999999999999999999999999999999999999


Q ss_pred             CCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhh
Q 008957          145 NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYV  224 (547)
Q Consensus       145 Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~  224 (547)
                      |||++++++.++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.
T Consensus        65 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  144 (485)
T TIGR00711        65 GTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT  144 (485)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccc-------cccCCcCCCCCccccc-ccc
Q 008957          225 YGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS-------VSEGSEASNLNDHVSE-DIS  296 (547)
Q Consensus       225 l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~  296 (547)
                      +++++.++.+||+.|++.++++++..++.++..|++++...  ++.+......       ........+......+ ...
T Consensus       145 ~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (485)
T TIGR00711       145 LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAAS--ENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEIL  222 (485)
T ss_pred             cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccccc--CCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHH
Confidence            99999999999999999998888777777766665322110  0000000000       0000000000000000 000


Q ss_pred             cchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhc
Q 008957          297 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI  375 (547)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~  375 (547)
                      .........-..........++...+ ..+++++.++...+..++..+..+...++.|.|+++..+.++... .......
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~  301 (485)
T TIGR00711       223 ILSITGLVAIIAFVVWELTDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVG  301 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            00000000000000000000000111 246788888888888888888888888899999998888776544 4445566


Q ss_pred             ccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHHHHHHHHHHHhhcCccceeeeecc
Q 008957          376 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-CL---SSLYGFLALFTVGELLVFATQAPVNYVCLHS  451 (547)
Q Consensus       376 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (547)
                      ++.+++.++.|++.||+++|     +.+..+..+......+.. ..   .+.+.......+.+++.+...++......+.
T Consensus       302 ~~~~~~~~~~g~l~~r~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~  376 (485)
T TIGR00711       302 LAPMLSSPIAGRMGDKIDPR-----KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSG  376 (485)
T ss_pred             HHHHHHHHHHHHHHhhcCcH-----HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88889999999999999998     555555544444444333 11   2334444455666677766666666677788


Q ss_pred             cCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcc
Q 008957          452 VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  486 (547)
Q Consensus       452 ~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  486 (547)
                      .|++.++++.|+.+...+. |..+|+.+.+.+.++
T Consensus       377 ~~~~~~g~~~~~~~~~~~~-g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       377 LPPHKIARGSSLSNFTRQL-GGSIGTALITTILTN  410 (485)
T ss_pred             CCHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            8889999999999888777 888899999988874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=5.2e-33  Score=279.68  Aligned_cols=385  Identities=12%  Similarity=0.107  Sum_probs=271.4

Q ss_pred             HHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcC
Q 008957           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN  145 (547)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G  145 (547)
                      .+..++++.+...++...++.                 .+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-----------------~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g   73 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNT-----------------ALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVG   73 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHH-----------------HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445566667777777766653                 448999999999999999999999999999999999999999


Q ss_pred             CceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhh
Q 008957          146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  225 (547)
Q Consensus       146 rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l  225 (547)
                      ||++++.+.++.+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+
T Consensus        74 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  153 (471)
T PRK10504         74 VRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPAL  153 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCcccccccccc------cc-CCcCCCCCccccccccc-
Q 008957          226 GGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV------SE-GSEASNLNDHVSEDISD-  297 (547)
Q Consensus       226 ~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~-  297 (547)
                      ++.+.++.|||+.|++....+.+..++.....|+.....   ++.+.......      .. ..+.............. 
T Consensus       154 ~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (471)
T PRK10504        154 GGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQT---RRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGL  230 (471)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccC---CCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHH
Confidence            999999999999999998877776666666555432111   00000000000      00 00000000000000000 


Q ss_pred             ----------chhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhh
Q 008957          298 ----------QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  367 (547)
Q Consensus       298 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  367 (547)
                                -..++...           ++...+. +++++|.++...+..++..........+.|.|++...+.++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  298 (471)
T PRK10504        231 VAVGVVALLLYLLHARNN-----------NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH  298 (471)
T ss_pred             HHHHHHHHHHHHHHHhcC-----------CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence                      00000000           0001122 4678999988888778777777777778888888766666544


Q ss_pred             H-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhhcCcc
Q 008957          368 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAP  443 (547)
Q Consensus       368 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  443 (547)
                      . .......++.+++.++.+++.||+++|     +.+..+..+..+..++....   .+.+.......+.+++.+..++.
T Consensus       299 ~g~~~~~~~~~~~~~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  373 (471)
T PRK10504        299 AGLMMIPMVLGSMGMKRIVVQVVNRFGYR-----RVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSS  373 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            3 333444566677778899999999998     56655555444443333322   22222233344455566666666


Q ss_pred             ceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccc
Q 008957          444 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  488 (547)
Q Consensus       444 ~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  488 (547)
                      ......+.+|++.++.+.|+.++.... |..+|+.+.|.+.+..|
T Consensus       374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        374 MNTLTLKDLPDNLASSGNSLLSMIMQL-SMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHcCCHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence            667777788889999999999877777 88899999999887654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-32  Score=268.88  Aligned_cols=400  Identities=15%  Similarity=0.109  Sum_probs=299.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHH-HHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~-~r~l~G~~~  184 (547)
                      +.++++|+.+..+++|+.++....+.+..++.+.+.||||.|++.++|.++.++|.++.+|++++|++++ .-++.|+|.
T Consensus        70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~  149 (509)
T KOG2504|consen   70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL  149 (509)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999877 568889999


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCC
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (547)
                      |..+.....++..||++| |+.+.|+...+.++|.++-|++..++.+.+|||+.+++.+.+.+-..+....+.|......
T Consensus       150 ~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~  228 (509)
T KOG2504|consen  150 GLIYLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK  228 (509)
T ss_pred             hhhhcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence            999999999999888765 9999999999999999999999999999999999999999999888777777777544432


Q ss_pred             CCCCccccccccccccCCcC-----CCCCccccc-ccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHH
Q 008957          265 APAESGKAQVVASVSEGSEA-----SNLNDHVSE-DISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  338 (547)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (547)
                      ++.+++..............     ...+....+ ........++.+ ..+.. ....+....--.++++++.++...+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~d~~ll~~~~fl~~~~~  306 (509)
T KOG2504|consen  229 PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGP-DKWRN-SPLQAFLSMLDLSLLKDPKFLLLALS  306 (509)
T ss_pred             chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCC-ccccc-cchhhhhhhhhHHHHcCchHHHHHHH
Confidence            22000000000000000000     000000000 000000000000 00000 00000000112478899999999999


Q ss_pred             HHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          339 YIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  418 (547)
Q Consensus       339 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (547)
                      ..+....+.....++|.|..+.+..+.....+.++.++..++++++.|++.|+...++.   .+...+.+...+..+...
T Consensus       307 ~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~~~~ll~~gl~~~~~p  383 (509)
T KOG2504|consen  307 NLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLFLLTLLIAGLARLFLP  383 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999655555555677788899999999999999999885421   344445555555555556


Q ss_pred             HhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHH
Q 008957          419 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALT  498 (547)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~  498 (547)
                      ...+.+..+....+.+++.+........++.+.+..+.-+.+.|+...+..+ +..+||++.|++.|..++|...|++.+
T Consensus       384 ~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi-~~l~gpPiag~~~d~tg~Y~~~f~~~g  462 (509)
T KOG2504|consen  384 FATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGI-GALVGPPIAGLLYDITGNYDHAFYFCG  462 (509)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHH-HHHcCcccceeeeeccCCeeeehhhcC
Confidence            6667777777777777777766666666788888889999999999777776 889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 008957          499 SIFFLAAGIWFVGI  512 (547)
Q Consensus       499 ~~~~~~~~~~~~~~  512 (547)
                      ++.+++..++++.+
T Consensus       463 ~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  463 LCFLLSAVLLLILR  476 (509)
T ss_pred             hHHHHHHHHHHHhH
Confidence            99999888877666

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=4e-33  Score=282.72  Aligned_cols=400  Identities=12%  Similarity=0.103  Sum_probs=259.3

Q ss_pred             CchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhh
Q 008957           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (547)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~  141 (547)
                      .+|+.+..+++.++.+.++....+.                 .+|.+.+++|++..+.+++.+.+.+++.+++++.|+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~   79 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITL-----------------VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMG   79 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777888888888888887774                 44889999999999999999999999999999999999


Q ss_pred             hhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhh
Q 008957          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (547)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (547)
                      ||+|||++++.+.++.+++.++.++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+
T Consensus        80 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (496)
T PRK03893         80 DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV  159 (496)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhh
Q 008957          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE  301 (547)
Q Consensus       222 g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (547)
                      ++.+++.+.++++||+.|++..+..++ .+......|+..+...+++++...               .+..+........
T Consensus       160 ~~~~~~~l~~~~~w~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~  223 (496)
T PRK03893        160 AAQVYSLVVPVWGWRALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPV---------------RTMVDILYRGEHR  223 (496)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccc---------------hhHHHHHhcchhH
Confidence            999999999999999999875443332 222222234422110000000000               0000000000000


Q ss_pred             hhcccccc-------hhhhhhhhhhhh-------------hh-H--hhcccchhHHHHHHHHHHHHHHHHHhhhccceeE
Q 008957          302 RSIKSIGE-------SRFLNQLSQFSQ-------------DT-K--VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  358 (547)
Q Consensus       302 ~~~~~~~~-------~~~~~~~~~~~~-------------~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  358 (547)
                      ........       ..........+.             .. .  ...+.+.........+...........++|.|++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~  303 (496)
T PRK03893        224 IINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLK  303 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            00000000       000000000000             00 0  0000111111111111111112234567888887


Q ss_pred             eeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH
Q 008957          359 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SSLYGFLALFTVGEL  435 (547)
Q Consensus       359 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  435 (547)
                      +..+.+.... .+.....++.+++.++.|++.||+++|     +.+..+..+..+..++....  .+.+......++.++
T Consensus       304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (496)
T PRK03893        304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR-----KAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQM  378 (496)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence            6667765443 455667788899999999999999998     55544444433333322222  222222222222222


Q ss_pred             HHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHH
Q 008957          436 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  501 (547)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  501 (547)
                      ......+....+..+.+|++.|++++|+.+...++ |..++|.+.|.+.|..| +...+...+.+.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~  442 (496)
T PRK03893        379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGAL-GGALAPILGALIAQRLD-LGTALASLSFSL  442 (496)
T ss_pred             HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhH-HHHHHHHHHHHHhccCC-hHHHHHHHHHHH
Confidence            33333444555667888889999999999877776 88899999999999876 656655544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=2.5e-32  Score=267.24  Aligned_cols=326  Identities=13%  Similarity=0.095  Sum_probs=240.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      +.+.+++|++..+.|++.+.+.++..+.+++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|+++|++.+
T Consensus        35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~  114 (400)
T PRK11646         35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT  114 (400)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCC
Q 008957          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (547)
                      ...+...+++.|++|+++|++++++.....++|..+||++++++. .+|||+.|++.++..++..++..+..|+...   
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~---  190 (400)
T PRK11646        115 LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL---  190 (400)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc---
Confidence            888999999999999999999999999999999999999999998 6899999999988877766655555554110   


Q ss_pred             CCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHH
Q 008957          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (547)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (547)
                         ++...                                            +..++++.++++|.++...+..+.....
T Consensus       191 ---~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (400)
T PRK11646        191 ---STVRT--------------------------------------------PVREGMTRVLRDKRFVTYVLTLTGYYML  223 (400)
T ss_pred             ---cccch--------------------------------------------hhHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence               00000                                            0012345667888877665555444444


Q ss_pred             HHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeee-cccccchhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008957          346 IGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILD-QMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  424 (547)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (547)
                      ......+.|.|.++.++.+.....+..+..++...+....+++.| |++.+     +.+..+..+..+..++....++.+
T Consensus       224 ~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~  298 (400)
T PRK11646        224 AVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE-----HRLMAGLLIMSLSMFPIGMVSNLQ  298 (400)
T ss_pred             HHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-----HHHHHHHHHHHHHHHHHHHhhhHH
Confidence            444556789888876664432223333333333333333344444 44433     333333333333333333444444


Q ss_pred             HHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccc
Q 008957          425 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  488 (547)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  488 (547)
                      ...+...+.+.+.....+.......+..|++.||++.|+.+...+. |..+||.+.|++.|..+
T Consensus       299 ~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        299 QLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLAL-GGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHH-HHHhcccchHHHHHHHh
Confidence            4444445555556666677777788888999999999999877777 88999999999998754

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=4e-32  Score=267.81  Aligned_cols=363  Identities=17%  Similarity=0.201  Sum_probs=261.2

Q ss_pred             HHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcC
Q 008957           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN  145 (547)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G  145 (547)
                      .+..+++.++...+++...+.                 ..|.+++++|+++.+.|++.+.+.+++.+++++.|++.||+|
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~-----------------~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G   89 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDI-----------------LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS   89 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            445555666666666655554                 349999999999999999999999999999999999999999


Q ss_pred             CceehHHHHHHHHHHHHhh---hccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhh
Q 008957          146 PFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG  222 (547)
Q Consensus       146 rr~~l~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  222 (547)
                      ||+++..+.++++++++++   +++++++.++++|+++|+|.+...+....++.|+.++++|.+.+++.+..+.+|..+|
T Consensus        90 ~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g  169 (438)
T PRK10133         90 YKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA  169 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999885   5789999999999999999999999999999998877777778999999999999999


Q ss_pred             hhhHHhhc-CC-------------------------CCchhHHHHHHHHHHHHHHHH-HhhccCccCCCCCCCccccccc
Q 008957          223 YVYGGVVG-SH-------------------------LNWRYAFWGEAILMLPFAVLA-FVIKPLQLKGFAPAESGKAQVV  275 (547)
Q Consensus       223 ~~l~~~l~-~~-------------------------~gwr~~f~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~  275 (547)
                      +.+++.+. ..                         .+||++|+....+..+..++. +...|+.+.     ++++..  
T Consensus       170 ~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~~~--  242 (438)
T PRK10133        170 VVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHSDA--  242 (438)
T ss_pred             HHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cccccc--
Confidence            99887543 00                         246666664443333222222 222233110     000000  


Q ss_pred             cccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccc
Q 008957          276 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK  355 (547)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  355 (547)
                                                             ...+..++.+.++++|.++...+..+++.........|.+.
T Consensus       243 ---------------------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~  283 (438)
T PRK10133        243 ---------------------------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR  283 (438)
T ss_pred             ---------------------------------------cccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                   00011133456788898887777777777777777778887


Q ss_pred             ee-EeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008957          356 AG-YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG  433 (547)
Q Consensus       356 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (547)
                      |+ ++..+.++... .......++.++++++++++.||+++|     +.+..+..+....+++....++. ..+..+.+.
T Consensus       284 ~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~  357 (438)
T PRK10133        284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGH-VGLIALTLC  357 (438)
T ss_pred             HHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHH
Confidence            74 56677776544 445667788999999999999999998     55555555444444443333333 234566778


Q ss_pred             HHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHH
Q 008957          434 ELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  500 (547)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  500 (547)
                      +++.+..+|..+....+..++ ..+++.++.. .... |+.++|.+.|.+.|..|+.+..|++...+
T Consensus       358 glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~-g~~~~~~i~G~l~~~~g~~~~~~~v~~~~  421 (438)
T PRK10133        358 SAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTII-GGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_pred             HHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhc-cchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            888889999998888887654 4677777774 3334 77888999999999766445566544433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=2.3e-33  Score=271.95  Aligned_cols=329  Identities=20%  Similarity=0.291  Sum_probs=249.5

Q ss_pred             ccc-ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhh
Q 008957          104 SGS-GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (547)
Q Consensus       104 ~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (547)
                      .+| .+.+++|.+..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++..+++|++.+++.|++.|+
T Consensus        18 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   97 (352)
T PF07690_consen   18 ALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGI   97 (352)
T ss_dssp             HHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccc
Confidence            337 7899999999999999999999999999999999999999999999999999997777777888899999999999


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccC
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (547)
                      +.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.++.+||+.|++.+++.++..++..++.+++++
T Consensus        98 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~  177 (352)
T PF07690_consen   98 GSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPP  177 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred             ccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999998887765555544332


Q ss_pred             CCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHH
Q 008957          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (547)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (547)
                      ....+++.+..                             +          +..++..+.++.+++++.+|...+..++.
T Consensus       178 ~~~~~~~~~~~-----------------------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (352)
T PF07690_consen  178 PRERESPKESE-----------------------------S----------KKPKPLKPGFKSLFKNPVLWILLIAFFLF  218 (352)
T ss_dssp             TTT--SSTTTT-----------------------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccc-----------------------------c----------ccccccccccccccccchhhhhhhhhhHH
Confidence            22111111100                             0          00001111245666777776555556666


Q ss_pred             HHHHHHHhhhccceeEeeccCc-hhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHH---
Q 008957          343 NFVIGAYSYWGPKAGYNIYHMS-NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA---  417 (547)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---  417 (547)
                      .........+.|.|+.+..+.+ .... .+..+..+.++++.++.+++.||++++     +.............+..   
T Consensus       219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  293 (352)
T PF07690_consen  219 FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----RRLLIAILLLILGALGLLLL  293 (352)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHH
Confidence            6677778899999988888888 4333 445666778888899999999999986     33333222222222222   


Q ss_pred             HHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCcc
Q 008957          418 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  477 (547)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~  477 (547)
                      ...++.........+.+++.+...+.......+..|++.+|++.|+.+...++ |..+||
T Consensus       294 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~igP  352 (352)
T PF07690_consen  294 PFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSL-GGIIGP  352 (352)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHCC
Confidence            22223455555666677778888888899999999999999999999887777 766665

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=4.8e-33  Score=274.58  Aligned_cols=381  Identities=17%  Similarity=0.226  Sum_probs=267.4

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  142 (547)
                      .|+.+..+++.++...++....+.                 ..|.+.+++|.+..+.+++.+.+.++..++.++.|+++|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d   77 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGF-----------------AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLAD   77 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-----------------hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            345566666666666666655553                 348899999999999999999999999999999999999


Q ss_pred             hcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhh
Q 008957          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG  222 (547)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g  222 (547)
                      |+|||++++.+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++
T Consensus        78 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  157 (398)
T TIGR00895        78 RIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVG  157 (398)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccc-cccccccCCcCCCCCcccccccccchhh
Q 008957          223 YVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ-VVASVSEGSEASNLNDHVSEDISDQASE  301 (547)
Q Consensus       223 ~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (547)
                      +.+++++.+..|||+.|++.++..++..++.+++.|++++...++++++.. ..++.......     +..+...+    
T Consensus       158 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----  228 (398)
T TIGR00895       158 GFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQA-----EAQSALPE----  228 (398)
T ss_pred             HHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccc-----cccccccc----
Confidence            999999999999999999998777777777666677654321111100000 00000000000     00000000    


Q ss_pred             hhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhh-Hhhhhhhcccccc
Q 008957          302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIV  380 (547)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~  380 (547)
                      +..+.       +..++..+..+...+.+..+...+..++..........+.|.+.++ .+.+... ........++.++
T Consensus       229 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~  300 (398)
T TIGR00895       229 QKATQ-------GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVI  300 (398)
T ss_pred             ccccc-------chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence            00000       0001111111111122333444444555556666677788855443 4555433 3445666788899


Q ss_pred             cceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHH
Q 008957          381 GTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALS  460 (547)
Q Consensus       381 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  460 (547)
                      +.++.+++.||+++|     ..............++.....+.+...+..++.+++.+...+.......+.+|++.|+++
T Consensus       301 ~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  375 (398)
T TIGR00895       301 GSIIFGWLADRLGPR-----VTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATG  375 (398)
T ss_pred             HHHHHHHHHhhcchH-----HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence            999999999999987     344333333333333333234555556666777777777778888888999999999999


Q ss_pred             HHHHHHHHHhhcCCCccchhhhh
Q 008957          461 MAISTVSIHIFGDVPSSPLVGVL  483 (547)
Q Consensus       461 ~g~~~~~~~~~g~~~~~~~~g~l  483 (547)
                      .|+.+...++ |..++|.+.|++
T Consensus       376 ~g~~~~~~~~-g~~~g~~~~G~l  397 (398)
T TIGR00895       376 VGWAIGIGRL-GAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHH-HHHHHHHhHHhc
Confidence            9999888777 888899888875

>TIGR00805 oat sodium-independent organic anion transporter

Probab=100.00  E-value=6e-31  Score=268.55  Aligned_cols=360  Identities=20%  Similarity=0.318  Sum_probs=264.6

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc---------------
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---------------  168 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~---------------  168 (547)
                      +++.++++|+++..+.|++.+.+.++++++.++.|+++||+|||+++.+++++++++++++++.+               
T Consensus        55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~  134 (633)
T TIGR00805        55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSST  134 (633)
T ss_pred             hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccc
Confidence            45999999999999999999999999999999999999999999999999999999999988753               


Q ss_pred             ------------------------------------cHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHH
Q 008957          169 ------------------------------------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY  212 (547)
Q Consensus       169 ------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  212 (547)
                                                          .+..++++|+++|+|.+..++...+++.|++|+++|++++++++
T Consensus       135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~  214 (633)
T TIGR00805       135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILE  214 (633)
T ss_pred             ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHH
Confidence                                                24567899999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhhhHHhhcCCC----------------------CchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCcc
Q 008957          213 MCIPTGVALGYVYGGVVGSHL----------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG  270 (547)
Q Consensus       213 ~~~~~G~~~g~~l~~~l~~~~----------------------gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  270 (547)
                      .+..+|.++|+++++++.+.+                      +|+..|++.+++.++.++..++ .|+..+......+.
T Consensus       215 ~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~-~p~~lp~~~~~~~~  293 (633)
T TIGR00805       215 SIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF-FPKALPKEGKRVNV  293 (633)
T ss_pred             HHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh-CccccCCcccccch
Confidence            999999999999999887532                      2777898888888877765544 44432211000000


Q ss_pred             ccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHh
Q 008957          271 KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYS  350 (547)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (547)
                      +.. +++.                .+...      ...+.......++++..++.++++|.++...+..++.....+++.
T Consensus       294 ~~~-~~~~----------------~~~~~------~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~  350 (633)
T TIGR00805       294 DVH-ETEK----------------LEKSE------DKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYI  350 (633)
T ss_pred             hhh-hhhc----------------ccccc------cccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            000 0000                00000      000000001223445677889999999999999999999999999


Q ss_pred             hhccceeEeeccCchhhH-hhhhhhcc-cccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHH-----------
Q 008957          351 YWGPKAGYNIYHMSNADM-MFGGVTIV-CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA-----------  417 (547)
Q Consensus       351 ~~~p~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  417 (547)
                      +|+|.|+++.++.++... .+..+..+ +.+++.+++|+++||++.+.....+..+...++........           
T Consensus       351 ~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~a  430 (633)
T TIGR00805       351 TFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVA  430 (633)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccc
Confidence            999999999888886554 33333333 56789999999999999764322222222222222111100           


Q ss_pred             ---------------H-H-------------------------------------------h------------------
Q 008957          418 ---------------F-C-------------------------------------------L------------------  420 (547)
Q Consensus       418 ---------------~-~-------------------------------------------~------------------  420 (547)
                                     . .                                           .                  
T Consensus       431 gv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C  510 (633)
T TIGR00805       431 GVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLC  510 (633)
T ss_pred             eeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCC
Confidence                           0 0                                           0                  


Q ss_pred             ----hh-HHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhccc
Q 008957          421 ----SS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  487 (547)
Q Consensus       421 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  487 (547)
                          .+ ...+++++++..+..+....+.+.++...+|+++|+.+.|+...+.+++|.+-+|+++|++.|..
T Consensus       511 ~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s  582 (633)
T TIGR00805       511 NPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS  582 (633)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence                00 12334444455555667778888899999999999999999999999999999999999999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=5.6e-32  Score=267.55  Aligned_cols=350  Identities=13%  Similarity=0.125  Sum_probs=255.7

Q ss_pred             cccccccccccCccc-----hhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHH
Q 008957          104 SGSGIQGDFKLNNFQ-----DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRM  178 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~-----~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~  178 (547)
                      .+|.+.+++|++..+     .|++.+++.++..++++++|+++||+|||++++.+.++.+++.+++.++++++.+++.|+
T Consensus        36 ~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (408)
T PRK09874         36 FLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRA  115 (408)
T ss_pred             hHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            448888999988665     488999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhcc
Q 008957          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (547)
Q Consensus       179 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  258 (547)
                      +.|++.+ ..+....++.+++|+++|++++++...+..+|..++|.+++.+.+..+||+.|++.+++.++..+..+++.|
T Consensus       116 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        116 LLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             HHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999865 567778889999999999999999999999999999999999998899999999999888777776666665


Q ss_pred             CccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHH-HH
Q 008957          259 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VL  337 (547)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  337 (547)
                      +..+..   ++++.                                         ..    .++....++++.++.. ..
T Consensus       195 ~~~~~~---~~~~~-----------------------------------------~~----~~~~~~~~~~~~~~~~~~~  226 (408)
T PRK09874        195 ENFQPV---SKKEM-----------------------------------------LH----MREVVTSLKNPKLVLSLFV  226 (408)
T ss_pred             cCcccc---cchhh-----------------------------------------hH----HHHHHHhCcCCchHHHHHH
Confidence            532110   00000                                         00    0111233455555442 22


Q ss_pred             HHHHHHHHHHHHhhhccceeEeeccCchh-h---HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH
Q 008957          338 GYIAYNFVIGAYSYWGPKAGYNIYHMSNA-D---MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (547)
Q Consensus       338 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  413 (547)
                      ..+........+..+.|.|..+..+.... .   ..+..+..++.+++.++.|++.||+++|     +.+..+..+....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~  301 (408)
T PRK09874        227 TTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----KILITALIFSVLL  301 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHH
Confidence            23333333444445566666554332221 1   1223445567778888889999999998     5555555544444


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHH
Q 008957          414 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  493 (547)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  493 (547)
                      .+.....++.+...+...+.+++.+...+.......+..+++.+++..++.+...+. |..+||.+.|.+.+..| |+..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~gp~~~G~l~~~~g-~~~~  379 (408)
T PRK09874        302 LIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDI-GNVTGPLMGAAISANYG-FRAV  379 (408)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHH-HHHhhHHHHHHHHhhcc-hhHH
Confidence            444444445555555556666766666666666667777889999999998877777 88999999999998865 8888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008957          494 TLALTSIFFLAAGIWF  509 (547)
Q Consensus       494 ~~~~~~~~~~~~~~~~  509 (547)
                      |.+.+++.+++.+...
T Consensus       380 f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        380 FLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888877776655544

>TIGR00897 2A0118 polyol permease family

Probab=99.98  E-value=1.3e-31  Score=263.04  Aligned_cols=351  Identities=13%  Similarity=0.152  Sum_probs=249.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhh---c-cccHHHHHHHHHHhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---S-SFDFWSIAICRMLVG  181 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-a~~~~~l~~~r~l~G  181 (547)
                      +.+.+|+|.++.+.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++++++.   + .++++.+++.|++.|
T Consensus        37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G  116 (402)
T TIGR00897        37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRG  116 (402)
T ss_pred             HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence            556688999999999999999999999999999999999999999999999999877652   3 358888999999999


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhh-hhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCc
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV-ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  260 (547)
                      ++.+...+...+.+.+++|+++|++++|+.+.+.++|. ++++++++++.+..||+..++......++..++.+++.++.
T Consensus       117 ~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (402)
T TIGR00897       117 LGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDI  196 (402)
T ss_pred             cchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            99988888888889999999999999999999999997 58999999999888977666655444444344444443332


Q ss_pred             cCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHH
Q 008957          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (547)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (547)
                      ++    +++++..                   +                     +.++..+.++.++++|.++...+..+
T Consensus       197 ~~----~~~~~~~-------------------~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (402)
T TIGR00897       197 FT----PQHMQTR-------------------E---------------------KFSELGKAATILFTNPNVLLGGMVRI  232 (402)
T ss_pred             CC----cccccCC-------------------c---------------------chhhHHHHHHHHHcChhHHHHHHHHH
Confidence            11    0000000                   0                     00001123556788999988888777


Q ss_pred             HHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHH-
Q 008957          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-  418 (547)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  418 (547)
                      +.....+.+.++.|.|.++ .+.+.... .......++++++.++.|+++||++||+.    ......+...+..+... 
T Consensus       233 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~----~~~~~~l~~~~~~~~l~~  307 (402)
T TIGR00897       233 INTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT----VRWFGGVGCGIFTLALYY  307 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH----HHHHHHHHHHHHHHHHHH
Confidence            7777788888899998866 56665443 44455678889999999999999998732    11111111111111111 


Q ss_pred             H----hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHH
Q 008957          419 C----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  494 (547)
Q Consensus       419 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  494 (547)
                      .    .++.+...+..++.+++.+... +..... .+.+|++|+++.|+.+...++ |..++|.+.|.+.|..| +...+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~-~~~~~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~~~g-~~~~~  383 (402)
T TIGR00897       308 IPQHFGHSFAVALIIAIALGIFLAGYV-PLAAVF-PTLAPKHKGAAMSVLNLSAGL-SAFLAPAIAVLFIGFFG-AIGVV  383 (402)
T ss_pred             HHHccCCcHHHHHHHHHHHHHHHHHHH-HHHHHH-HhhCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcc-hHHHH
Confidence            1    1233444445555555554432 233333 346678999999999888887 88889999999999876 65777


Q ss_pred             HHHHHHHHHHHHHHH
Q 008957          495 LALTSIFFLAAGIWF  509 (547)
Q Consensus       495 ~~~~~~~~~~~~~~~  509 (547)
                      ++.+++.+++.++..
T Consensus       384 ~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       384 WIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777666555544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12382 putative transporter; Provisional

Probab=99.98  E-value=8e-32  Score=264.44  Aligned_cols=341  Identities=14%  Similarity=0.066  Sum_probs=237.5

Q ss_pred             cccc-cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhh---hc-----cccHHHHH
Q 008957          104 SGSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GS-----SFDFWSIA  174 (547)
Q Consensus       104 ~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~-----a~~~~~l~  174 (547)
                      .+|. +.+|+|+|..++|++.+++.+++.++++++|+++||+||||+++.+.+...++.+..   ++     .+|++.++
T Consensus        37 ~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  116 (392)
T PRK12382         37 VIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLV  116 (392)
T ss_pred             hhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHH
Confidence            3454 678999999999999999999999999999999999999999999988877765432   22     35789999


Q ss_pred             HHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 008957          175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (547)
Q Consensus       175 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  254 (547)
                      ++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+||++++++.+..|||+.+.+..+..++.... .
T Consensus       117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~  195 (392)
T PRK12382        117 VGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF-N  195 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-H
Confidence            999999999999999889999999999999999999999999999999999999998899998877665443322211 1


Q ss_pred             hhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHH
Q 008957          255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (547)
Q Consensus       255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (547)
                      ...|+.+     +++++.                                         ...+   +..+.+.+ +.+  
T Consensus       196 ~~~~~~~-----~~~~~~-----------------------------------------~~~~---~~~~~~~~-~~~--  223 (392)
T PRK12382        196 GTVRKVP-----AHAGER-----------------------------------------PSLW---SVVGLIWK-PGL--  223 (392)
T ss_pred             HhccCCC-----CCcccC-----------------------------------------chHH---HHHHHHHH-hHH--
Confidence            1112100     000000                                         0000   11111111 111  


Q ss_pred             HHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHH
Q 008957          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  414 (547)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  414 (547)
                         ..++..........+.|.|+++. +.+... .......++.+++.++.|++.||+++|     +.+..+..+..+..
T Consensus       224 ---~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~  293 (392)
T PRK12382        224 ---GLALQGVGFAVIGTFVSLYFASK-GWAMAG-FTLTAFGGAFVLMRVLFGWMPDRFGGV-----KVAIVSLLVETVGL  293 (392)
T ss_pred             ---HHHHHHHHHhHHHHHHHHHHHhc-CCchhH-HHHHHHHHHHHHHHHHHHHHHHhcCCC-----eehHHHHHHHHHHH
Confidence               11222233334455556666543 333222 223344566778889999999999988     44444444444444


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHH
Q 008957          415 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  494 (547)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  494 (547)
                      ++....++.+...+...+.+++.+...+.......+..+++.|+++.|+.+...+. |..++|.+.|++.|+.| |+..+
T Consensus       294 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ig~~~~g~l~~~~g-~~~~~  371 (392)
T PRK12382        294 LLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDI-AYGVSGPLAGMLATSFG-YPSVF  371 (392)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-chHHH
Confidence            44444455555555556666666666666666777888889999999999887777 88889999999999876 88888


Q ss_pred             HHHHHHHHHHHHHHH
Q 008957          495 LALTSIFFLAAGIWF  509 (547)
Q Consensus       495 ~~~~~~~~~~~~~~~  509 (547)
                      .+.+.+.+++.++..
T Consensus       372 ~~~~~~~~~~~~~~~  386 (392)
T PRK12382        372 LAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888877666655444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.98  E-value=1e-31  Score=262.67  Aligned_cols=345  Identities=11%  Similarity=0.070  Sum_probs=247.2

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehH-HHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      .+++++|.+..+.|++.+++.++..+.+++.|+++||+||||.++ .+.++..++.+++++++|++.+++.|++.|.+.+
T Consensus        23 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  102 (375)
T TIGR00899        23 FLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAS  102 (375)
T ss_pred             HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Confidence            467899999999999999999999999999999999999998765 4566667788888999999999999999998888


Q ss_pred             hhhhcccccccccCCCCCcchh--hhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          186 SFISLAAPFIDDNAPVPQKTAW--LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      ...|...+++.|+.|+++|++.  .++...+.++|.++|+++++.+.+..|||+.|++.++..++..++.+++.||.++.
T Consensus       103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  182 (375)
T TIGR00899       103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRG  182 (375)
T ss_pred             hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence            8888888889999887777754  57888889999999999999999889999999999988887777777766763321


Q ss_pred             CCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHH
Q 008957          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                      ..  ++.+ .                                               .+.+..++++.++...+..++..
T Consensus       183 ~~--~~~~-~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  212 (375)
T TIGR00899       183 AP--GALT-R-----------------------------------------------LEVRGLLASRDTRLLFVACTLMW  212 (375)
T ss_pred             cc--cccC-c-----------------------------------------------chhhhhhcCcchHHHHHHHHHHH
Confidence            10  0000 0                                               01122345555555544444444


Q ss_pred             HHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008957          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  422 (547)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (547)
                      ........+.|.++++..+.++... ..........+++.++.|++.||+++|     +.+...........+.....++
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~  287 (375)
T TIGR00899       213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR-----RLMLLAALAGVAFYTGLAADNS  287 (375)
T ss_pred             HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHHHHH
Confidence            4444556677888776666665433 233333455667778899999999998     4554444443333333333445


Q ss_pred             HHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHH
Q 008957          423 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  502 (547)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  502 (547)
                      .+...+...+.+++.+...+.......+.. |++++++.++.+...+. |..++|.+.|.+.+..| |+..+.+.+++.+
T Consensus       288 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~  364 (375)
T TIGR00899       288 LWALLMLQLLNAIFIGILAGIGMLYFQDLM-PGRAGAATTLYTNTGRV-GWIIAGSVGGILAERWS-YHAVYWFAIVMLI  364 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence            555555555555555555554444555544 55677999999888776 88999999999998765 7778887777766


Q ss_pred             HHHHHHH
Q 008957          503 LAAGIWF  509 (547)
Q Consensus       503 ~~~~~~~  509 (547)
                      ++.++..
T Consensus       365 ~~~~~~~  371 (375)
T TIGR00899       365 VALFCLL  371 (375)
T ss_pred             HHHHHHh
Confidence            6555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.98  E-value=2.2e-31  Score=261.35  Aligned_cols=325  Identities=15%  Similarity=0.079  Sum_probs=231.0

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      .+|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|+++|++
T Consensus        25 ~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~  104 (392)
T PRK10473         25 GLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIG  104 (392)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      .+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.++.+++..++.++..||+++.
T Consensus       105 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        105 AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999999999999999999999999988888999999999988888777776666653211


Q ss_pred             CCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHH
Q 008957          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                      .    +++..                                        .    ..+..++.++++.++...+...+..
T Consensus       185 ~----~~~~~----------------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~  216 (392)
T PRK10473        185 R----APAAS----------------------------------------S----KPRENSESLLNRFFLSRLVITTLSV  216 (392)
T ss_pred             c----cCCcc----------------------------------------c----hHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            0    00000                                        0    0012234556676665554444444


Q ss_pred             HHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008957          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  422 (547)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (547)
                      .....+..+.|.+.++..+.+.... .......++.+++.++.+++.||+++|     +.+..+..+.....+......+
T Consensus       217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~  291 (392)
T PRK10473        217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR-----TLMLTSQVLFLAAGITLALSPS  291 (392)
T ss_pred             HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555667777766667665443 344556778889999999999999998     5555554444444433333333


Q ss_pred             HHHHHHHHHHHHHHHhhcCccceeeeecccCCcch-hHHHHHHHHHHHhhcCCCccchhhhhhcccc
Q 008957          423 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR-ALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  488 (547)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  488 (547)
                      .+.......+...+.+..++....  .+..|.+.| +.+.++.    .. +..+++.+.+++.+..|
T Consensus       292 ~~~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~g~~~~~~----~~-~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        292 HAVSLFGITLICAGFSVGFGVAMS--QALGPFSLRAGVASSTL----GI-AQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH--HHhccCcccccHHHHHH----HH-HHHHHHHHHHHHHHHhc
Confidence            333333333333333333222221  222233333 3333332    23 44556777778877665

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.98  E-value=1.2e-31  Score=261.72  Aligned_cols=356  Identities=16%  Similarity=0.176  Sum_probs=249.0

Q ss_pred             HHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCC
Q 008957           67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP  146 (547)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr  146 (547)
                      +..++++.++...+...+..                 .+|.+.+++|.|..++|++.+.+.+++.+++++.|+++||+||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~-----------------~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~   70 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNT-----------------LVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGF   70 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHH-----------------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            44455555556566555553                 5599999999999999999999999999999999999999999


Q ss_pred             ceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhH
Q 008957          147 FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG  226 (547)
Q Consensus       147 r~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~  226 (547)
                      |+++..+.++.+++.+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.++
T Consensus        71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  150 (381)
T PRK03633         71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV  150 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             HhhcCCCCchhHHHHHHHHHHHHHHHHHhhc-cCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcc
Q 008957          227 GVVGSHLNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK  305 (547)
Q Consensus       227 ~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (547)
                      +.+.+...|...+. .+...... +..++.. ++.  .   +++ +..                                
T Consensus       151 ~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~--~---~~~-~~~--------------------------------  190 (381)
T PRK03633        151 SKVSTELMSVLPWV-TGLVLAAI-LPLLFTRILNQ--Q---AEN-HDS--------------------------------  190 (381)
T ss_pred             hcccccccchHHHH-HHHHHHHH-HHHHHhcccCC--C---CCC-CCC--------------------------------
Confidence            99876543433332 22222211 1112211 110  0   000 000                                


Q ss_pred             cccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhh-Hhhhhhhccccccccee
Q 008957          306 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTIS  384 (547)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  384 (547)
                                     .+.++.+++|.++......+...........++|.|.++. +.+... ........++.+++.++
T Consensus       191 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~  254 (381)
T PRK03633        191 ---------------TSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQ-GMSDASIGFWMALLVSAGILGQWP  254 (381)
T ss_pred             ---------------CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence                           1123455666666554444444444555667788888764 454433 34445666788899999


Q ss_pred             eeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHH
Q 008957          385 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  464 (547)
Q Consensus       385 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~  464 (547)
                      .|++.||+++|     +.+..+..+..+.++...  .. ........+.+.+.....+.......+..+++.++...+..
T Consensus       255 ~g~l~dr~~~~-----~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  326 (381)
T PRK03633        255 IGRLADRFGRL-----LVLRVQVFVVILGSIAML--SQ-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQAL  326 (381)
T ss_pred             hHHHHHHcCcH-----HHHHHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            99999999998     555444444333333222  11 11222333344444445566666677777777777777777


Q ss_pred             HHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHH
Q 008957          465 TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  505 (547)
Q Consensus       465 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  505 (547)
                      +...++ |.++||.+.|++.|+.+ +...|.+.+.+.++..
T Consensus       327 ~~~~~l-G~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        327 LLSYTV-GSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence            666666 88999999999999876 6677777666655443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=1.7e-31  Score=260.95  Aligned_cols=360  Identities=16%  Similarity=0.152  Sum_probs=267.6

Q ss_pred             HHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCC
Q 008957           67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP  146 (547)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr  146 (547)
                      +.++++.++...+.....+                 |.+|.+++++|++..+.|++.+.+.+++.+++++.|++.||+||
T Consensus         5 ~~~~~~~f~~~G~~~~~~~-----------------~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~   67 (410)
T TIGR00885         5 FALITSLFALWGFANDITN-----------------PMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY   67 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHH-----------------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            3445555555555555544                 35599999999999999999999999999999999999999999


Q ss_pred             ceehHHHHHHHHHHHHhhhc---cccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhh
Q 008957          147 FRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (547)
Q Consensus       147 r~~l~~~~~~~~~~~~~~~~---a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~  223 (547)
                      |++++++.++++++.+++..   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+|+
T Consensus        68 r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~  147 (410)
T TIGR00885        68 KAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGM  147 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988643   468999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhcCC--------------------------CCchhHHHHHHHHHHHHHHHHHhh-ccCccCCCCCCCcccccccc
Q 008957          224 VYGGVVGSH--------------------------LNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVA  276 (547)
Q Consensus       224 ~l~~~l~~~--------------------------~gwr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~  276 (547)
                      .+++.+...                          .+||++|++.+++.++..++..+. .|+.+.    +++++ .   
T Consensus       148 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~----~~~~~-~---  219 (410)
T TIGR00885       148 VVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH----SDAKQ-I---  219 (410)
T ss_pred             HHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccccc-c---
Confidence            998877422                          369999999998777665544332 122100    00000 0   


Q ss_pred             ccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccce
Q 008957          277 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA  356 (547)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  356 (547)
                                                               +...+.+.++++|.++...+..+++.........+++.|
T Consensus       220 -----------------------------------------~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y  258 (410)
T TIGR00885       220 -----------------------------------------SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQY  258 (410)
T ss_pred             -----------------------------------------cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                     000123456788888888888888877777778888888


Q ss_pred             eEeec-cCchh-hHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 008957          357 GYNIY-HMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGE  434 (547)
Q Consensus       357 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (547)
                      .++.. +.+.. ..........+..+|+++++++.||+++|     +.+......+.+.+++....++.. ....+.+.+
T Consensus       259 ~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~-----~~l~i~~~~~~~~~ll~~~~~~~~-~~~~l~~~g  332 (410)
T TIGR00885       259 AVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH-----KVLMAYAIIGMALCLGSIFAGGHV-GLYCLTLCS  332 (410)
T ss_pred             HhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence            86533 22221 12233444567789999999999999988     666666666666666655554433 356666777


Q ss_pred             HHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhccc-----chhHHHHHHHHHHH
Q 008957          435 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-----NNWRKTTLALTSIF  501 (547)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-----~~~~~~~~~~~~~~  501 (547)
                      ++.+..+|.++....+..+++.+..+.++...   .+|+.+.|++.|++.|..     |+++..|++...+.
T Consensus       333 lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~---~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~  401 (410)
T TIGR00885       333 AFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA---IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF  401 (410)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH---HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence            88888889889888888877655445555432   258899999999999954     34666666544443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=1.7e-31  Score=261.18  Aligned_cols=331  Identities=17%  Similarity=0.171  Sum_probs=243.8

Q ss_pred             CccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHH
Q 008957          100 GICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML  179 (547)
Q Consensus       100 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  179 (547)
                      .+.|.+|.+.+++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.|++
T Consensus         9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l   88 (377)
T PRK11102          9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL   88 (377)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            45578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      .|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+...+..||
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPE  168 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999988899999999988888777766666665


Q ss_pred             ccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHH
Q 008957          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (547)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (547)
                      ..+..   ++++ .                                         ..++..++++..++++.++...+..
T Consensus       169 ~~~~~---~~~~-~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  203 (377)
T PRK11102        169 TLPKE---RRQP-F-----------------------------------------HLRTTIRNFASLFRHKRVLGYMLAS  203 (377)
T ss_pred             cCccc---ccCC-C-----------------------------------------ChHHHHHHHHHHHcChHHHHHHHHH
Confidence            32110   0000 0                                         0000113455677888877776666


Q ss_pred             HHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHH---H
Q 008957          340 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC---L  415 (547)
Q Consensus       340 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~---~  415 (547)
                      ++.......+..+.|.++.+..+.++... .......++.+++.++.+++.||+++|     +.+..+..+.....   .
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~  278 (377)
T PRK11102        204 GFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL-----NMLRFGLWIQFIMGIWLV  278 (377)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHH
Confidence            66666666777777877777667665443 444566788889999999999999998     44444333222211   1


Q ss_pred             HHHHh-hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhh
Q 008957          416 TAFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  481 (547)
Q Consensus       416 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g  481 (547)
                      ..... .+.+...+...+...+.+...........+. .|+.++++.++.+.....+|..+++.+.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        279 VSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDE-FPHMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11111 1233333333333333333333333344444 45889999999877666556666665433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=5.1e-31  Score=257.33  Aligned_cols=353  Identities=14%  Similarity=0.094  Sum_probs=246.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      +.+.+|++.+..+.+++.+++.+++.++.+++|+++||+|||++++++.+++++++++++++.+.   ++.|+++|++.+
T Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a  103 (393)
T PRK11195         27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAA  103 (393)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            55678999999999999999999999999999999999999999999999999999888777664   789999999999


Q ss_pred             hhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCC
Q 008957          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (547)
                      ...|...+++.|++|+++|++++++.+....+|.++||.+++++.+. .|+..+.+.+...++. ++..+..||.+...+
T Consensus       104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~  181 (393)
T PRK11195        104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRP  181 (393)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCccccc
Confidence            99999999999999999999999999999999999999999999875 4777777766554333 333444555321100


Q ss_pred             CCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHH
Q 008957          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (547)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (547)
                      +.+ .+..                                        ...++..+.++.++++|.+........+....
T Consensus       182 ~~~-~~~~----------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  220 (393)
T PRK11195        182 GQS-WNPI----------------------------------------ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGA  220 (393)
T ss_pred             ccC-CCHH----------------------------------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            000 0000                                        00111223345667777766555444444444


Q ss_pred             HHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008957          346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  424 (547)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (547)
                      .....+..|.++++.++.++... .......++.+++.++.+++.||.+++     +.+..+..++ ...+.....++.+
T Consensus       221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~-----~~~~~g~~~~-~~~~~~~~~~~~~  294 (393)
T PRK11195        221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL-----RVLPAGILMG-LVVLLMALQHSLL  294 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----chHHHHHHHH-HHHHHHHHHhHHH
Confidence            44455555666666667765444 444566678888889999988887766     3444433332 2222222334445


Q ss_pred             HHHHHHHHHHHHHhhcCccceeeeecccCCcc-hhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHH
Q 008957          425 GFLALFTVGELLVFATQAPVNYVCLHSVKPSL-RALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL  503 (547)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  503 (547)
                      ......++.+++.+...++......+..|++. +|++.++.+...+. +..++..+.+.+ +..| .+..+.+.+...++
T Consensus       295 ~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~  371 (393)
T PRK11195        295 PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENL-AMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLV  371 (393)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHH-HHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHH
Confidence            45555556667766666667777666544444 79999999888877 778888888766 4444 55666666666666


Q ss_pred             HHHHHHHHHh
Q 008957          504 AAGIWFVGIF  513 (547)
Q Consensus       504 ~~~~~~~~~~  513 (547)
                      ...+.+.+++
T Consensus       372 ~~~~~~~~~~  381 (393)
T PRK11195        372 ALAMALLWRW  381 (393)
T ss_pred             HHHHHHHHHH
Confidence            6666655543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=9.1e-31  Score=257.16  Aligned_cols=329  Identities=12%  Similarity=0.076  Sum_probs=239.5

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhh
Q 008957          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (547)
Q Consensus       103 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (547)
                      |.+|.+.+++|+++.+.+++.+.+.+++.++++++|+++||+|||++++++.++..++.+++.++++++.+++.|++.|+
T Consensus        29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  108 (394)
T PRK11652         29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGL  108 (394)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            35589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccC
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (547)
                      +.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.+..|||+.|++.++..++..++..+..||.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            99988888888999999999999999999999999999999999999988999999999988877766666556565321


Q ss_pred             CCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHH
Q 008957          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (547)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (547)
                      ..     ++..                                            +..+.++..+++|.++...+..+..
T Consensus       189 ~~-----~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  219 (394)
T PRK11652        189 AD-----ARRT--------------------------------------------RVLASYRTLLSNRRFNCYLLMLIGT  219 (394)
T ss_pred             cc-----cchh--------------------------------------------HHHHHHHHHHcChHHHHHHHHHHHH
Confidence            10     0000                                            0113456677888777666555555


Q ss_pred             HHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH--
Q 008957          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--  419 (547)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  419 (547)
                      ......+..+.+.++++..+.+.... .+.....++.+++.++.+++.||.+++.    ........+..........  
T Consensus       220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  295 (394)
T PRK11652        220 LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM----WQSVICCLLAGLLMWIPGWFG  295 (394)
T ss_pred             HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence            55555556667777777666665433 3333444555666666666666665321    1111222222222111111  


Q ss_pred             hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcc
Q 008957          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  486 (547)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  486 (547)
                      ..+.+......++.+++.+...+.......+.. |+.++++.++.+....+ |..+++.+.+.+.+.
T Consensus       296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~l-g~~~~~~~~~~~~~~  360 (394)
T PRK11652        296 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF-PYLAGTAGALLGGLQNI-GSGLAALLSAMLPQT  360 (394)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHH-HHHHHHHHHHHccCC
Confidence            123344455556666666666676776666655 46789999999877776 878888888877654

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=1.2e-30  Score=256.82  Aligned_cols=328  Identities=19%  Similarity=0.137  Sum_probs=238.5

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhh
Q 008957          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (547)
Q Consensus       103 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (547)
                      |.+|.+.+++|.++.+.+++.+++.+++.++++++|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|+
T Consensus        27 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  106 (401)
T PRK11043         27 PAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAV  106 (401)
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            56688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccC
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (547)
                      +.+...+...+++.|+++++++++..+.......+|..++|.+++++.++.|||+.|++.+++.++..+..+++.|+.+ 
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-  185 (401)
T PRK11043        107 GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKK-  185 (401)
T ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCC-
Confidence            9988888888899999999999999999999999999999999999999999999999998888777666554433211 


Q ss_pred             CCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHH
Q 008957          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (547)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (547)
                           ++++ .                                        +    ...+++++++++.++...+...+.
T Consensus       186 -----~~~~-~----------------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~  215 (401)
T PRK11043        186 -----ARKQ-S----------------------------------------Q----DALTFKQLLKSKTYLGNVLIFAAC  215 (401)
T ss_pred             -----cccc-c----------------------------------------h----HHHHHHHHHcChhHHHHHHHHHHH
Confidence                 0000 0                                        0    002345667777777655555555


Q ss_pred             HHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH--
Q 008957          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--  419 (547)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  419 (547)
                      ......+..+.|.+.++ .+.+.... .......++.+++.++.+++.||+++|+..  ........++.........  
T Consensus       216 ~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  292 (401)
T PRK11043        216 SAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL--PWLLVLFAVSVIAIWLASLLS  292 (401)
T ss_pred             HHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence            55556667778887765 45664433 223344566777888888999999887321  1111111122111111111  


Q ss_pred             hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcc
Q 008957          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  486 (547)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  486 (547)
                      .++.+...+...+.+++.+..++.......+.. |+.++++.|+.+..... +...++.+.|.+.+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~-~~~~~~~~~g~l~~~  357 (401)
T PRK11043        293 HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPF-PQATGKAAALQNTLQLG-LCFLASLLVSALIST  357 (401)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-cccChHHHHHHHHHHHH-HHHHHHHHHHHccCC
Confidence            123333444445555666666665555555544 56899999999887666 556678888888774

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=2e-30  Score=253.31  Aligned_cols=337  Identities=15%  Similarity=0.083  Sum_probs=242.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      +.+.+++|++..+.|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|.+.+
T Consensus        32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  111 (395)
T PRK10054         32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS  111 (395)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            55778899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCC
Q 008957          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (547)
                      ...+...++..|..|+++|++++++.....++|.++||++++++.+ .+||+.|++.++..++..++..+..|+..+.  
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~--  188 (395)
T PRK10054        112 VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKA--  188 (395)
T ss_pred             HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence            8888899999999999999999999999999999999999999875 6999999999888777666655555542211  


Q ss_pred             CCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHH
Q 008957          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (547)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (547)
                        ++++..                                        +.     .+.++.+++|.++...+..++..+.
T Consensus       189 --~~~~~~----------------------------------------~~-----~~~~~~~~~~~~~~~~~~~~l~~~~  221 (395)
T PRK10054        189 --IATETG----------------------------------------SV-----WSPSVLLQDKALLWFTCSGFLASFV  221 (395)
T ss_pred             --cccchh----------------------------------------hh-----hhhhhhccCceehHHHHHHHHHHHH
Confidence              000000                                        00     1124567888888777766666555


Q ss_pred             HHHHhhhccceeEeec--cCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH-hh
Q 008957          346 IGAYSYWGPKAGYNIY--HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-LS  421 (547)
Q Consensus       346 ~~~~~~~~p~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  421 (547)
                      ...+..+.+.|.....  +.+.... .+.....+..+......+++.||.++|     +.+..+..+.....+.... .+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~  296 (395)
T PRK10054        222 SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR-----PLMTAGTLCFVIGLVGFIFSGN  296 (395)
T ss_pred             HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch-----hHHHHHHHHHHHHHHHHHHcch
Confidence            5544445555543222  2222222 233334445555556677888988887     4554444444333333322 23


Q ss_pred             hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHH
Q 008957          422 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  500 (547)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  500 (547)
                      +.+...+...+.+++.....+.....+.+..|++.+++..+..+ ..+. |..+||.+.|.+.|+.| +...+++.+.+
T Consensus       297 ~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~-G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~  372 (395)
T PRK10054        297 SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWL-GAAINPLVSGVILTTLP-PWSLFVILALA  372 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHH-HHHHHHHHHHHHHHHcC-hhhHHHHHHHH
Confidence            44444555556666655555655666777788889999988764 4455 88999999999999886 44555554444

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.9e-30  Score=248.37  Aligned_cols=390  Identities=14%  Similarity=0.120  Sum_probs=259.7

Q ss_pred             hhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc---cccHHHHHHHHHHhhhhhhhhhhcccccc
Q 008957          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEASFISLAAPFI  195 (547)
Q Consensus       119 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a~~~~~l~~~r~l~G~~~~~~~~~~~~~i  195 (547)
                      .+.+.+++.+|.++|++..|.++||+|||..++++.++..++.++..+   ++++++++++|++.|+..|......+.++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            577889999999999999999999999999999999888887777654   57899999999999999999999999999


Q ss_pred             cccCCCCCcchhhhHHHHhhhhhhhhhhhhHH--hhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccc
Q 008957          196 DDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG--VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  273 (547)
Q Consensus       196 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~--~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  273 (547)
                      .|..|++.||....+.+.+..+|.+++..++.  .+.+...|++.+....+++++..++..+ .||+++..-..+.++..
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~-~PESPk~Ll~~k~~~~~  220 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPF-LPESPKYLLIKKGDEEE  220 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhc-CCCCcchHHHHcCCHHH
Confidence            99999999999999999999999999977764  3445667999999999888776665544 47777654321111111


Q ss_pred             cccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHH-----HHHHHHHHHHHHH
Q 008957          274 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-----VLGYIAYNFVIGA  348 (547)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  348 (547)
                      .++.. +..+..++++++.++..++.+.++..+           +...+++++++++..+.-     ++.......+.+.
T Consensus       221 A~~sl-~~y~G~~~~~~~~e~~~~e~~~~~~~~-----------~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~a  288 (485)
T KOG0569|consen  221 ARKAL-KFYRGKEDVEAEIEEMLREIEEEELEK-----------KKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINA  288 (485)
T ss_pred             HHHHH-HHHhCCCcchhHHHHHHHHHHHhcccc-----------ccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcce
Confidence            11111 111111111111111111111111110           011345566666554442     2333333344556


Q ss_pred             HhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh----hhH-
Q 008957          349 YSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSL-  423 (547)
Q Consensus       349 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-  423 (547)
                      ..+|...++++.+-....+.......++..++..+++.+++||.|||     ++++.+..++.+..+++...    +.. 
T Consensus       289 i~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR-----pLll~~~~~~~~~~~~~~~~~~l~~~~~  363 (485)
T KOG0569|consen  289 IFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR-----PLLLISLSLMAVALLLMSIALFLSNSFG  363 (485)
T ss_pred             eHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66676667766553333444566677788999999999999999999     67776666655554443322    111 


Q ss_pred             -H---HHHHHHHHHHHHHhhcCcccee-eeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHH
Q 008957          424 -Y---GFLALFTVGELLVFATQAPVNY-VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALT  498 (547)
Q Consensus       424 -~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~  498 (547)
                       |   ..++..++..+..+.+..++.. +..|.+|++.|+.+.++.....+. ..++-...+..+.+..|.  ..|+.+.
T Consensus       364 ~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~-~~fiv~~~fp~l~~~~g~--~~filF~  440 (485)
T KOG0569|consen  364 SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWL-SNFIVGFAFPPLQNVIGP--YVFILFV  440 (485)
T ss_pred             hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcc--hhhHHHH
Confidence             1   2344555555566666555544 456667779999999999888888 556567788888888885  3455554


Q ss_pred             HHHHHHHHHHHHHHhhcc-cccccchhhhhhccc
Q 008957          499 SIFFLAAGIWFVGIFLKS-IDKFNEDGENQISLD  531 (547)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  531 (547)
                      +..++  ...+.++++|| |+|+.+|+.++.++.
T Consensus       441 i~~~~--~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  441 IPLAI--FLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHH--HHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            44333  33334457788 778888877766544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=1.6e-30  Score=252.11  Aligned_cols=326  Identities=22%  Similarity=0.312  Sum_probs=277.0

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      ..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  100 (352)
T cd06174          21 ALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLG  100 (352)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence            44788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      .+...+...+++.|++|+++|++.+++.+....+|..+++.+++.+.+..+||+.|++.+++.++..+...+..      
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  174 (352)
T cd06174         101 GGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL------  174 (352)
T ss_pred             cccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            99999999999999999999999999999999999999999999999888999999999888777666554431      


Q ss_pred             CCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHH
Q 008957          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                                                                                        |.++...+..++..
T Consensus       175 ------------------------------------------------------------------~~~~~~~~~~~~~~  188 (352)
T cd06174         175 ------------------------------------------------------------------RLLLLLALAFFLLS  188 (352)
T ss_pred             ------------------------------------------------------------------HHHHHHHHHHHHHH
Confidence                                                                              34555566677777


Q ss_pred             HHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHH-HHHHHHHHHHHHHHHHHHhh
Q 008957          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFK-LLSAATFLGAISCLTAFCLS  421 (547)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  421 (547)
                      ........+.|.+..+..+.+.... .......++.+++.++.+++.||+++|     + .+..+..+..+..+.....+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-----RLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHhc
Confidence            7778888888888887656665443 455667788899999999999999998     5 66666666666666655556


Q ss_pred             hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHH
Q 008957          422 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  501 (547)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  501 (547)
                      +.+...+...+.+++.+...+.......+..|+++|++..|+.+...+. |..++|.+.|.+.+..+ ++..+.+.+++.
T Consensus       264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~  341 (352)
T cd06174         264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSL-GGALGPLLAGLLLDTGG-YGGVFLILAALA  341 (352)
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccC-cchHHHHHHHHH
Confidence            6666777778888888888888888999999889999999999888777 88899999999998754 778888887777


Q ss_pred             HHHHHHH
Q 008957          502 FLAAGIW  508 (547)
Q Consensus       502 ~~~~~~~  508 (547)
                      +++.+..
T Consensus       342 ~i~~i~~  348 (352)
T cd06174         342 LLAALLL  348 (352)
T ss_pred             HHHHHHh
Confidence            6665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=1.2e-30  Score=252.37  Aligned_cols=330  Identities=14%  Similarity=0.049  Sum_probs=239.7

Q ss_pred             cccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhh
Q 008957          102 CTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (547)
Q Consensus       102 ~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  181 (547)
                      .|.+|.+.+++|++.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g   98 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIG   98 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence            357799999999999999999999999999999999999999999999999999998888887 7889999999999999


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC--CchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      ++.+...+....++.|+++ ++|++++++++.+.++|..+++.+++.+.++.  +||+.|.+.++..++..+   ...|+
T Consensus        99 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~---~~~~~  174 (355)
T TIGR00896        99 VGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL---AWIPQ  174 (355)
T ss_pred             HHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHhhh
Confidence            9999988888889999986 57999999999999999999999998887654  399999887765443322   22233


Q ss_pred             ccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHH
Q 008957          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (547)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (547)
                      .++.   +++++..                               .              ....++++|+|.++...+..
T Consensus       175 ~~~~---~~~~~~~-------------------------------~--------------~~~~~~~~~~~~~~~~~~~~  206 (355)
T TIGR00896       175 VRRR---VAANQTT-------------------------------T--------------RLTPVRIWRSPLAWQVTVFF  206 (355)
T ss_pred             hccc---cCCCCCC-------------------------------C--------------CCCCchhhcCHhHHHHHHHH
Confidence            2111   0000000                               0              01123456778887776666


Q ss_pred             HHHHHHHHHHhhhccceeEeeccCchhh-HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          340 IAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  418 (547)
Q Consensus       340 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (547)
                      ++....++....|+|.|+++. +.+... ....++..++.++++++.|++.||+++|+    ..+.....+..+..+...
T Consensus       207 ~~~~~~~~~~~~~lp~~~~~~-g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~~~~~~~  281 (355)
T TIGR00896       207 GLQSGLYYSLIGWLPAILISH-GASAATAGSLLALMQLAQAASALLIPALARRVKDQR----GIVAVLAVLQLVGLCGLL  281 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHHHHHHHHHHHHHH
Confidence            666677777888999998764 555433 34556778889999999999999995542    344444333333333333


Q ss_pred             HhhhHHHHHHHHHHHHHHHhhcCccceeeeecccC-CcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhH
Q 008957          419 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  491 (547)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~  491 (547)
                      ...+..... ...+.+++.+..++.......+..+ ++.++...++.+...+. +.+++|.+.|++.|+.|+|.
T Consensus       282 ~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       282 FAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYL-LAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccC
Confidence            322222222 3345566665555554444444444 46778888888776676 77789999999999888764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=3.4e-30  Score=250.94  Aligned_cols=324  Identities=16%  Similarity=0.118  Sum_probs=228.3

Q ss_pred             cccc-cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc-cHHHHHHHHHHhh
Q 008957          104 SGSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVG  181 (547)
Q Consensus       104 ~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r~l~G  181 (547)
                      .+|. +++++|+++.+.+++.+++.+++.++++++|+++||+|||+.++++.++..++.+++++++ +++.+++.|+++|
T Consensus        23 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g  102 (366)
T TIGR00886        23 LAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIG  102 (366)
T ss_pred             hhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4474 8999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC----------CCCchhHH-HHHHHHHHHHH
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAF-WGEAILMLPFA  250 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~----------~~gwr~~f-~~~~~~~~~~~  250 (547)
                      ++.+. .+....+++|++|+++|++++++.....++|..+++.+++.+..          +.+||+.| +..++...+..
T Consensus       103 ~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  181 (366)
T TIGR00886       103 IAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPA  181 (366)
T ss_pred             Hhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHH
Confidence            98664 56678899999999999999999998888888888777765543          34899999 44466555555


Q ss_pred             HHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccc
Q 008957          251 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEK  330 (547)
Q Consensus       251 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (547)
                      ++.+...++.++..+++++.+..            .    ....    .    .+            ...+..++.+++|
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~----~----~~------------~~~~~~~~~~~~~  225 (366)
T TIGR00886       182 LLIFFVGADTPPGKPATGKLSFK------------G----ARWS----V----GT------------GALGDQLKVFRDR  225 (366)
T ss_pred             HHHHHhcccCCcccccchhcccc------------c----cccc----c----cc------------hhHHHHHHHHhcc
Confidence            55555555533211000000000            0    0000    0    00            0001334567788


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHH
Q 008957          331 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  409 (547)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  409 (547)
                      .++...+..++.......+..+.|.|+++.++.+.... .+..+..++++++.+++|++.||+++|     +.+......
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~  300 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-----RKLLMSFLG  300 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-----hhHHHHHHH
Confidence            88887777777777777888889999988777775444 345566778889999999999999997     333332222


Q ss_pred             HHHHH-HHHHHhh---hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHh
Q 008957          410 GAISC-LTAFCLS---SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  470 (547)
Q Consensus       410 ~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~  470 (547)
                      ..... ++.....   +.+...+...+...+.+...+.......+.. ++++|++.|+.+...+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~  364 (366)
T TIGR00886       301 VAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIF-RRATGAVSGLVGAIGNL  364 (366)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhc-hhhcccHHHHHHHhccC
Confidence            22222 2222222   3444444444555555555565665555544 57999999998776655

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=7.6e-31  Score=258.49  Aligned_cols=343  Identities=14%  Similarity=0.077  Sum_probs=237.2

Q ss_pred             cccccccc--cCccchhHHHHH-----HHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHH-------
Q 008957          106 SGIQGDFK--LNNFQDGVLSSA-----FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW-------  171 (547)
Q Consensus       106 ~~i~~~~~--~s~~~~g~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~-------  171 (547)
                      +.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||++++.+.++..++.++++++++++       
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (394)
T TIGR00883        17 VLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAP   96 (394)
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHH
Confidence            55555543  445666665443     3334457899999999999999999999999999999999999876       


Q ss_pred             -HHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhc--------CCCCchhHHHHH
Q 008957          172 -SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGE  242 (547)
Q Consensus       172 -~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~gwr~~f~~~  242 (547)
                       .++++|+++|++.+...+....++.|++++++|++..++.+.+..+|.++++.++..+.        +.++||+.|++.
T Consensus        97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  176 (394)
T TIGR00883        97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVS  176 (394)
T ss_pred             HHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHH
Confidence             47889999999999999999999999999999999999999999999999998876653        357899999988


Q ss_pred             HHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhh
Q 008957          243 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  322 (547)
Q Consensus       243 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (547)
                      +++.++..++ ....||+++...++++++                                ..              ..+
T Consensus       177 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------------------------------~~--------------~~~  209 (394)
T TIGR00883       177 AVLVLIGLYL-RRNLEETPVFEKAQEKHK--------------------------------KK--------------RGP  209 (394)
T ss_pred             HHHHHHHHHH-HHhcCCChhHHHHHhccc--------------------------------cc--------------cCC
Confidence            7665543332 223343221100000000                                00              011


Q ss_pred             hHhhcccch--hHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhH
Q 008957          323 TKVLLQEKV--YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA  399 (547)
Q Consensus       323 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  399 (547)
                      .++.++++.  ++......++.....+....+.|.|.++..+.+.... .......++.+++.++.|++.||++||    
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~----  285 (394)
T TIGR00883       210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR----  285 (394)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH----
Confidence            233344433  5655666666666677778889998876666664433 444556678888899999999999998    


Q ss_pred             HHHHHHHHHHHHHHH--HHHHH--hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCC
Q 008957          400 FKLLSAATFLGAISC--LTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  475 (547)
Q Consensus       400 ~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~  475 (547)
                       +.+.....+.....  +....  .++.+......++.+++.+...++......+.+|++.|+++.++.+...+.+|..+
T Consensus       286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~  364 (394)
T TIGR00883       286 -PVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGF  364 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhH
Confidence             44433322222211  11111  13344444555566666667777788888898999999999998655555558888


Q ss_pred             ccchhhhhhcccchhHHHHHHHHHH
Q 008957          476 SSPLVGVLQDHVNNWRKTTLALTSI  500 (547)
Q Consensus       476 ~~~~~g~l~~~~~~~~~~~~~~~~~  500 (547)
                      +|.+.|++.|+.|.+...++..+++
T Consensus       365 ~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       365 APYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             HHHHHHHHHHHcCcchhHHHHHHHH
Confidence            9999999999877565555544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=1.5e-29  Score=247.75  Aligned_cols=344  Identities=10%  Similarity=0.069  Sum_probs=225.1

Q ss_pred             cccccccccCccchhHHHHHHHH-HHhhhhhhhhhhhhhcCCceeh-HHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      +.+.+++|++.+++|++.+...+ ++.++.+++++ +||+||||.+ +.+.++.+++.++.+++++++.+++.+.+.|..
T Consensus        40 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  118 (393)
T PRK15011         40 IFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSF  118 (393)
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            45788999999999999876655 66666666565 9999999875 556666678888888999999887666555544


Q ss_pred             hhhhhhcccccccccCCCCCcc--hhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          184 EASFISLAAPFIDDNAPVPQKT--AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      .+...|...+++.|+.++++|.  ...++.+.+.++|.++||++++.+.+++|||+.|++.++.+++.++..++..||.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        119 GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            5567888888888888766553  44578888999999999999999998899999999999888887777777667642


Q ss_pred             CCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHH
Q 008957          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (547)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (547)
                      +..+  +.++..                                               +..+.  +++..+........
T Consensus       199 ~~~~--~~~~~~-----------------------------------------------~~~~~--~~~~~~~~~~~~~~  227 (393)
T PRK15011        199 KELP--LATGTL-----------------------------------------------EAPRR--NRRDTLLLFVICTL  227 (393)
T ss_pred             CCCc--cccccc-----------------------------------------------ccccc--ccccHHHHHHHHHH
Confidence            2110  000000                                               00000  01112222222333


Q ss_pred             HHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 008957          342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  420 (547)
Q Consensus       342 ~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (547)
                      .......+..+.|.|+++..+.+.... .+.....++.+++.++.|+++||+++|     +.+..+.......+......
T Consensus       228 ~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~  302 (393)
T PRK15011        228 MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-----FLMRVAAVAGVCFYAGMLMA  302 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHHH
Confidence            334444556678888877777775443 333444566778889999999999998     44443333333333222233


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHH
Q 008957          421 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  500 (547)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  500 (547)
                      ++.+..++...+.+++.+...+.......+.. |+.++++.++.+...++ |..++|.+.|.+.|..| |+..+.+.+++
T Consensus       303 ~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~-p~~~g~~~~~~~~~~~l-g~~~g~~l~G~i~~~~g-~~~~~~~~~~~  379 (393)
T PRK15011        303 HSPAILLGLQLLNAIYIGILGGIGMLYFQDLM-PGQAGSATTLYTNTSRV-GWIIAGSLAGIVAEIWN-YHAVFWFALVM  379 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            44443333333333333333233333344444 45699999998877776 88999999999999765 77777766666


Q ss_pred             HHHHHHHHH
Q 008957          501 FFLAAGIWF  509 (547)
Q Consensus       501 ~~~~~~~~~  509 (547)
                      .+++.+..+
T Consensus       380 ~~~~~~~~~  388 (393)
T PRK15011        380 IIATLFCLL  388 (393)
T ss_pred             HHHHHHHHH
Confidence            555444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.97  E-value=6.8e-30  Score=249.15  Aligned_cols=343  Identities=12%  Similarity=-0.003  Sum_probs=256.8

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceeh----HHHHHHHHHHHHhhhccccHHHHHHHHH
Q 008957          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI----GVGLSVWTFATAGCGSSFDFWSIAICRM  178 (547)
Q Consensus       103 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~a~~~~~l~~~r~  178 (547)
                      |.+|.+.+++|+|..++|++.+++.+...++++++|+++||+|||+..    ..+..+..+  ..+.++++++.+++.|+
T Consensus        25 p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~  102 (382)
T TIGR00902        25 PFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIG  102 (382)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHH
Confidence            455888999999999999999999999999999999999999985432    222222222  24446889999999999


Q ss_pred             HhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhcc
Q 008957          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (547)
Q Consensus       179 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  258 (547)
                      ++|.+.+...|...++..++  +++|++..+......++|.+++|++++.+.+++|||+.|++.++... ..++.+...|
T Consensus       103 l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~-~~~~~~~~~~  179 (382)
T TIGR00902       103 LFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA-FMLIGFLIKP  179 (382)
T ss_pred             HHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH-HHHHHHHcCC
Confidence            99999888888888887665  46799999999999999999999999999999999999998765532 2223333323


Q ss_pred             CccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHH
Q 008957          259 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  338 (547)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (547)
                      +.++..  +++++..                                            +..++.++++|+|.++...+.
T Consensus       180 ~~~~~~--~~~~~~~--------------------------------------------~~~~~~~~~l~~~~~~~~l~~  213 (382)
T TIGR00902       180 TIPPKD--AIPEDES--------------------------------------------QGDSAFIALLKNPMNLRFLAA  213 (382)
T ss_pred             CCCCCc--ccccccc--------------------------------------------ccchhHHHHHcChHHHHHHHH
Confidence            211110  0000000                                            001235678899999998888


Q ss_pred             HHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHH
Q 008957          339 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (547)
Q Consensus       339 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (547)
                      .++.......+..+.|.|+++ .+.+.... ....+..++.+++.++.+++.||++.|     +.+..+.+...+...+.
T Consensus       214 ~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----~~l~~~~~~~~~~~~~~  287 (382)
T TIGR00902       214 VCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----DLLLISAIACVGRWAII  287 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----HHHHHHHHHHHHHHHHH
Confidence            888888888888899999877 56665333 344456677888888888999999988     67777777776666666


Q ss_pred             HHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHH
Q 008957          418 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  497 (547)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  497 (547)
                      ...++.+..+....+-++..+...+....++.+. |++.++++.++++.....+|.+++|.+.|++.|+.| + ..|.+.
T Consensus       288 ~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~  364 (382)
T TIGR00902       288 GAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFM  364 (382)
T ss_pred             HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHH
Confidence            6677777777778888888888877777777776 888999999998755555588999999999999986 4 566666


Q ss_pred             HHHHHHHH
Q 008957          498 TSIFFLAA  505 (547)
Q Consensus       498 ~~~~~~~~  505 (547)
                      +++.+++.
T Consensus       365 ~~~~~~~~  372 (382)
T TIGR00902       365 AIIAAAAF  372 (382)
T ss_pred             HHHHHHHH
Confidence            66655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.97  E-value=6.1e-30  Score=226.94  Aligned_cols=417  Identities=13%  Similarity=0.085  Sum_probs=281.9

Q ss_pred             CchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhh
Q 008957           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (547)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~  141 (547)
                      ..|.........+..+.+.....+.                 ..|.+...+|.+..|..++......|..+++..+|.++
T Consensus        75 fq~yl~~~ag~gwmad~m~~m~~s~-----------------i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~  137 (528)
T KOG0253|consen   75 FQWYLFFVAGMGWMADAMEMMLLSL-----------------ILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSA  137 (528)
T ss_pred             chhhHHHHhhhHHHHHHHHHHHHHH-----------------HHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheeh
Confidence            3455666666666666554444443                 22778889999999999999999999999999999999


Q ss_pred             hhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhh
Q 008957          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (547)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (547)
                      |++|||+.+.+..+..++...+.+.++|+..++++|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++
T Consensus       138 d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~  215 (528)
T KOG0253|consen  138 DTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVF  215 (528)
T ss_pred             hhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 898999999999999999887777 999999999


Q ss_pred             hhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCC-CCCccccccccccccCCcCCCCCc-ccccccccch
Q 008957          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA-PAESGKAQVVASVSEGSEASNLND-HVSEDISDQA  299 (547)
Q Consensus       222 g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  299 (547)
                      ...++-....++||||.....+.+..+.+.+.+ ..||+++... +.++.+.....++..+.++..... ......++++
T Consensus       216 ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~-w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~  294 (528)
T KOG0253|consen  216 EALLAWGVMSNFGWRYLLFTSSTPLMFAARFLV-WVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQ  294 (528)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHh-hcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhh
Confidence            999999889999999999999877666555544 4467665432 223333332222222222211110 0000111111


Q ss_pred             hhhhcccccchhhhhhhhhhhhhhHhhccc---chhHHHHHHHHHHHHHHHHHhhhccc-----------------eeEe
Q 008957          300 SERSIKSIGESRFLNQLSQFSQDTKVLLQE---KVYVVNVLGYIAYNFVIGAYSYWGPK-----------------AGYN  359 (547)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~-----------------~~~~  359 (547)
                      +++...  ..+.+.+..++...+..+++..   ++.+.....++...+.+++.......                 +.+.
T Consensus       295 e~e~~~--~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~  372 (528)
T KOG0253|consen  295 EQEESD--LDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELET  372 (528)
T ss_pred             hhhhhc--hhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHh
Confidence            110000  0000000001111222333321   22222223333333444443322222                 2221


Q ss_pred             ecc---CchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 008957          360 IYH---MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL  436 (547)
Q Consensus       360 ~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (547)
                      ..+   .+...+.-..+..+..++|.++.++++||+|||     +.+....++..++.+++....+......+.+..-++
T Consensus       373 ~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK-----kTMal~l~~f~iflfll~~c~~rn~~tvllf~araf  447 (528)
T KOG0253|consen  373 RANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK-----KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF  447 (528)
T ss_pred             hhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence            100   111112222445688899999999999999999     777777777777777777776777777788888889


Q ss_pred             HhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          437 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      ..+.+...+.+..|.+|+..|+++.|.+..+..+ |+++.|++. ...+. . ...+..+++.+++++.++..
T Consensus       448 isg~fqvaYvYtPEVyPTavRatgvGtcSsmaRI-ggI~~p~iA-~~~e~-s-~sl~i~vy~~~~ilagIavc  516 (528)
T KOG0253|consen  448 ISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARI-GGIFSPVIA-MRAEL-S-TSLPIFVYGALFILAGIAVC  516 (528)
T ss_pred             HhchheEEEEecCcccchhhhhcchhhhhhHHhh-hhhhhhHHH-HHhcc-c-eeehHHHHHHHHHHHHHHhe
Confidence            9999999999999999999999999999877777 989999777 43332 2 22566677777776666655

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=2.6e-29  Score=253.58  Aligned_cols=391  Identities=15%  Similarity=0.146  Sum_probs=258.4

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhccccccc
Q 008957          117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFID  196 (547)
Q Consensus       117 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~  196 (547)
                      .+.+|+.+.+.++..++++++|+++|++|||+.++++.+++.+|.+++++++|+++++++|+++|+|.|......+.+++
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            34599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC-CCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccc
Q 008957          197 DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV  275 (547)
Q Consensus       197 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  275 (547)
                      |..|++.||...+..+....+|..++..++....+. .+||..+.+..+++++..+. .++.||++++..+..+.+... 
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~-  246 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAK-  246 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHH-
Confidence            999999999999999999999999996666555433 58999999999999988888 777788776543321111110 


Q ss_pred             cccccCCcC--CCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhc----ccchhHHHHHHHHHHHHHHHHH
Q 008957          276 ASVSEGSEA--SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL----QEKVYVVNVLGYIAYNFVIGAY  349 (547)
Q Consensus       276 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  349 (547)
                       ........  .....++.+.++.....+....  .       ++  ..+++++    +++.+....+..+.+..+....
T Consensus       247 -~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~--~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~  314 (513)
T KOG0254|consen  247 -RSLKRLRGLSPEDVEVELELLKIKLLVEAEVA--E-------GK--ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYV  314 (513)
T ss_pred             -HHHHHHhCCCCcchHHHHHHHHHHHHHhhhcc--c-------cc--ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceE
Confidence             00000111  1111111111110000000000  0       00  0112222    2233444455555555666777


Q ss_pred             hhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh---------
Q 008957          350 SYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---------  420 (547)
Q Consensus       350 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  420 (547)
                      .+|.+.+++..+..+.. .....+.++..+++.+++.++.||+|||     ++++.+.....++.++....         
T Consensus       315 ~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr-----~lll~s~~~m~~~~~~~~~~~~~~~~~~~  388 (513)
T KOG0254|consen  315 FYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR-----KLLLFGAAGMSICLVILAVVGVFALYYPN  388 (513)
T ss_pred             EeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHhHHHHHHHHHHHHHHHHHhccCCC
Confidence            78888888776665443 3344555677777777889999999999     66666555555444433321         


Q ss_pred             ---hhHHHHHHHHHHHHHHHhhcCccceeee-ecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHH
Q 008957          421 ---SSLYGFLALFTVGELLVFATQAPVNYVC-LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  496 (547)
Q Consensus       421 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  496 (547)
                         ...+..++..++........+.++.+.+ .|.+|.+.|+.+.++...+.+.....+ ......+.+..+ ....|..
T Consensus       389 ~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-~~~~~~~~~~~~-~~~~f~~  466 (513)
T KOG0254|consen  389 SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-SFFFPFITEALG-IGGTFGY  466 (513)
T ss_pred             cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcc-ccchHHH
Confidence               1123445555566666667777777755 555556999999999988888855554 334444444322 1234555


Q ss_pred             HHHHHHHHHHHHHHHHhhcc-cccccchhhhhhcc
Q 008957          497 LTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQISL  530 (547)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  530 (547)
                      ++.+..+.... ++....|| |+++.|+.++...+
T Consensus       467 f~~~~~~~~~~-fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  467 FGGICLLSLII-FVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HHHHHHHHHHH-HheEEcccCCCCcHHHHHHHHHc
Confidence            44444443332 22335566 88888887775544

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.96  E-value=2.8e-29  Score=251.13  Aligned_cols=352  Identities=13%  Similarity=0.101  Sum_probs=246.3

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc-----CCcee-hHHHHHHHHHHHHhhhcc---ccHHHHH
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSIA  174 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~a---~~~~~l~  174 (547)
                      .+|...++.|.+.+++|.+ +.....+ ++.+++|+++||+     |||+. ++.+.++.+++.++.++.   ++++.+.
T Consensus        34 ~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~  111 (491)
T PRK11010         34 TLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLA  111 (491)
T ss_pred             HHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence            3377788889999899987 4444444 6899999999999     99985 667777777777777664   4788899


Q ss_pred             HHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC-CCCchhHHHHHHHHHHHHHHHH
Q 008957          175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLA  253 (547)
Q Consensus       175 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~gwr~~f~~~~~~~~~~~~~~  253 (547)
                      +.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..|||..|++.+++.++..+..
T Consensus       112 ~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~  191 (491)
T PRK11010        112 ALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988 5799999999998877665554


Q ss_pred             HhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhH
Q 008957          254 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  333 (547)
Q Consensus       254 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (547)
                      ++ .||++...   ++++..                               +           ++...+++++++++..+
T Consensus       192 ~~-~~e~~~~~---~~~~~~-------------------------------~-----------~~~~~~l~~~~~~~~~~  225 (491)
T PRK11010        192 LL-APEPTDTI---PVPKTL-------------------------------E-----------QAVVAPLRDFFGRNNAW  225 (491)
T ss_pred             Hh-cCCCcccc---ccccch-------------------------------h-----------hhHHHHHHHHHcCcCHH
Confidence            44 45532110   000000                               0           00013355666777766


Q ss_pred             HHHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhh-h-hhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHH
Q 008957          334 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-G-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  411 (547)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  411 (547)
                      ...+..+++.........+.+.|+.+..+.+...... . ....++.+++.+++|++.||+++|     +.+....++..
T Consensus       226 ~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-----~~l~i~~~l~~  300 (491)
T PRK11010        226 LILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF-----RALMIFGILQG  300 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHH
Confidence            6655555555555556667777776666777655433 2 344578899999999999999987     44433332222


Q ss_pred             HHH---HHHHHh-hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhccc
Q 008957          412 ISC---LTAFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  487 (547)
Q Consensus       412 ~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  487 (547)
                      +..   ...... ++.+...+..++..++.+...+.......+..+++.+++..|+.+...++ |..+++.+.|++.|..
T Consensus       301 l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~l-g~~~~~~~~G~l~~~~  379 (491)
T PRK11010        301 VSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAV-GRVYVGPVAGWFVEAH  379 (491)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            211   111111 23333333333333333334444566667777888899999999888777 7777777999999987


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHH
Q 008957          488 NNWRKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~  510 (547)
                      | |...|.+.+++.+.+.++...
T Consensus       380 G-~~~~f~~~~~~~l~~l~~~~~  401 (491)
T PRK11010        380 G-WPTFYLFSVAAAVPGLLLLLV  401 (491)
T ss_pred             C-hHHHHHHHHHHHHHHHHHHHH
Confidence            6 878888888777776665553

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.7e-29  Score=223.91  Aligned_cols=348  Identities=15%  Similarity=0.066  Sum_probs=256.1

Q ss_pred             ccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhh
Q 008957          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (547)
Q Consensus       109 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~  188 (547)
                      ..+.+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++++..+++++++..+++.++++|.+||+|.+...
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD  177 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence            34556678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccCCCC-CcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCC
Q 008957          189 SLAAPFIDDNAPVP-QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  267 (547)
Q Consensus       189 ~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  267 (547)
                      +++.++++|.+|++ +|++++|+...+.++|.++||++||++.+..|.+.+|++.++++++-..+.+++++.+....+  
T Consensus       178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~--  255 (464)
T KOG3764|consen  178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD--  255 (464)
T ss_pred             hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc--
Confidence            99999999999975 589999999999999999999999999999999999999999999999998888743221110  


Q ss_pred             CccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHH
Q 008957          268 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG  347 (547)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (547)
                      +..+.                                                .++..++++|..+.........+....
T Consensus       256 ~~~~~------------------------------------------------~~~~~Ll~dP~I~~~agai~~~n~~la  287 (464)
T KOG3764|consen  256 STEQG------------------------------------------------TPMWSLLMDPYILLIAGAITFSNSSLA  287 (464)
T ss_pred             ccccC------------------------------------------------ccHHHHHhCchHhhhhcchhhccchHH
Confidence            00000                                                235678889988877666555555444


Q ss_pred             HHhhhccceeEeeccCchhhHhhh-hhhcccccccceeeeeeeecccccchhHHHHH-HHHHHHHHHHHHHHHHhhhHHH
Q 008957          348 AYSYWGPKAGYNIYHMSNADMMFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLL-SAATFLGAISCLTAFCLSSLYG  425 (547)
Q Consensus       348 ~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  425 (547)
                      ...-.++.++.+....+.....+. ....+...++..+.|.+.||+++.+    +.+ ..+.++....+......++...
T Consensus       288 fLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~----wl~~~~gl~~~G~~~~~iP~~~~~~~  363 (464)
T KOG3764|consen  288 FLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLR----WLLSLGGLATVGVSSGPIPFATSIAQ  363 (464)
T ss_pred             HhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchh----HHHHHHHHHHHHHHhchhHhhhhHHH
Confidence            444444454555444333233333 3345778899999999999999542    233 3333333333333344444433


Q ss_pred             HHHH---HHHHHHHHhhcCccceeeeecccCCc---chhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHH
Q 008957          426 FLAL---FTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  499 (547)
Q Consensus       426 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  499 (547)
                      .++.   .++.+........+......+....+   .-|...++......+ |.++||.++|.+.+..| +.+...+.+.
T Consensus       364 L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sl-a~a~GP~~gg~iv~~iG-F~wl~~iig~  441 (464)
T KOG3764|consen  364 LWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSL-AYAIGPTFGGSLVEAIG-FEWLMTIIGI  441 (464)
T ss_pred             HhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHH-hhhccccccchheeehh-HHHHHHHHHH
Confidence            3333   33333333344444444444443334   678899998766666 99999999999999987 7777777777


Q ss_pred             HHHHHHHHHHHHH
Q 008957          500 IFFLAAGIWFVGI  512 (547)
Q Consensus       500 ~~~~~~~~~~~~~  512 (547)
                      ..++..-++...+
T Consensus       442 ~n~iyapvl~ll~  454 (464)
T KOG3764|consen  442 LNLIYAPVLLLLR  454 (464)
T ss_pred             HHHHHHHHHHHHH
Confidence            7666555555444

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.96  E-value=9.3e-29  Score=232.77  Aligned_cols=353  Identities=9%  Similarity=0.020  Sum_probs=237.7

Q ss_pred             ccccccccccCccc-hhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          105 GSGIQGDFKLNNFQ-DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       105 ~~~i~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      .|.+.+|+|+|..| .|.+.++++.+|+++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++
T Consensus        49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGva  128 (511)
T TIGR00806        49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVT  128 (511)
T ss_pred             HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHH--HHHHHHHHHHHHhhccCcc
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGE--AILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~--~~~~~~~~~~~~~~~p~~~  261 (547)
                      .|... +...++..|+|+++|+++.++..++..+|.++++++++++. .+|||+-+.+.  ...+..+++++.+++|...
T Consensus       129 EA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~  206 (511)
T TIGR00806       129 MAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNIISLVFMTFSVFLALFLKRPK  206 (511)
T ss_pred             HHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            99999 99999999999999999999999999999999999999954 67999766544  2333445555556666433


Q ss_pred             CCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHH
Q 008957          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (547)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (547)
                      +..--.+++...  .....+.+..          ..+...+. .+..+.......+..+.+++...+++.+..-.+-+.+
T Consensus       207 ~sl~f~~~~~~~--~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~  273 (511)
T TIGR00806       207 RSLFFNRLEDVR--GALPCELDQM----------VPGPGGKL-EDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVF  273 (511)
T ss_pred             hhhhhccccccc--cccccccccC----------CCCCcccc-chhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHH
Confidence            321100000000  0000000000          00000000 0000011113345667788888888888777777766


Q ss_pred             HHHHHHHHhhhccceeEeeccCch-hhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 008957          342 YNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  420 (547)
Q Consensus       342 ~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (547)
                      ...+++-+.+|....-.+.....+ .....-++..+.+.+..+..|++-.++.+..   ...+.+..++.....+++...
T Consensus       274 a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~---~l~l~v~s~~~~gll~~m~~t  350 (511)
T TIGR00806       274 NSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWS---KLLIAVVSAIQAGLVFWMSQS  350 (511)
T ss_pred             HhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhH---HHHHHHHHHHHHHHhhhhhcc
Confidence            666666666555443333222111 1112223333445556667777644443210   023334444555555666667


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCC
Q 008957          421 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  475 (547)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~  475 (547)
                      ++.|...+...++........+....-++.....+.-|-..|+.+.+.-.+-.++
T Consensus       351 ~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtil  405 (511)
T TIGR00806       351 HDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTII  405 (511)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHhe
Confidence            7888888888888888887777777777777777777888888765554434333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.96  E-value=7.5e-29  Score=275.30  Aligned_cols=345  Identities=14%  Similarity=0.016  Sum_probs=245.7

Q ss_pred             ccccccccCc-cchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHH---HHHHHHHHHHhhhccccHHHHHHHHHHhhh
Q 008957          107 GIQGDFKLNN-FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV---GLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (547)
Q Consensus       107 ~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (547)
                      .+..+.+.+. ...++..+++.+.++++++++|+++||+|||+++..   ..++..+..+.....+|+++++++|+++|+
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi  120 (1140)
T PRK06814         41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGI  120 (1140)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444444433 447888999999999999999999999999997533   223333333333445899999999999999


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccC
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (547)
                      +.+...|+..+++.+++++++|++++++.+++.++|.++||++++++....+|++.|+..++..++ +++..+..|+...
T Consensus       121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  199 (1140)
T PRK06814        121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGN  199 (1140)
T ss_pred             HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999554444443 3444444444221


Q ss_pred             CCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHH
Q 008957          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (547)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (547)
                      ... ..+.+.                                         ...++....++.+.+++.++...+..++.
T Consensus       200 ~~~-~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (1140)
T PRK06814        200 AAP-DLKIDR-----------------------------------------NIIRSTITLLKYAKADKRIWLAILGISWF  237 (1140)
T ss_pred             CCC-CCeecc-----------------------------------------chHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            100 000000                                         00011224567788999999988888888


Q ss_pred             HHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHH-HHHH-
Q 008957          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TAFC-  419 (547)
Q Consensus       343 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-  419 (547)
                      ++....+..++|.|+++.++.+.... .+.+...++.++|.++.|++.++..+++     .+..+.++..+..+ +... 
T Consensus       238 ~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~  312 (1140)
T PRK06814        238 WLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLL-----YVPIGALLMGLFGLDLAFAS  312 (1140)
T ss_pred             HHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeee-----eehHHHHHHHHHHHHHHhcc
Confidence            88888888899999988877775443 4456777888999999999998766652     22222222111111 1110 


Q ss_pred             ------------------hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhh
Q 008957          420 ------------------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  481 (547)
Q Consensus       420 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g  481 (547)
                                        ..+.+..++..++.+++.+...++..+++.+..|++.+|+++|+.+..... |..+++.+.|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~-~~~ig~~~~g  391 (1140)
T PRK06814        313 SSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAA-FMVAGTIILA  391 (1140)
T ss_pred             cccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHH-HHHHHHHHHH
Confidence                              134455556666677777777778888899999999999999999887776 7788998988


Q ss_pred             hhhcccchhHHHHHHHHHH
Q 008957          482 VLQDHVNNWRKTTLALTSI  500 (547)
Q Consensus       482 ~l~~~~~~~~~~~~~~~~~  500 (547)
                      .+.+...++...+++.+.+
T Consensus       392 ~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        392 LLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHhccCHHHHHHHHHHH
Confidence            8876444454555444443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.4e-29  Score=229.44  Aligned_cols=425  Identities=15%  Similarity=0.130  Sum_probs=278.0

Q ss_pred             hhHHHHHHHHHHHHhhcccccccccccCCccccCCCCcccccccccccc--------ccCccchhHHHHHHHHHHhhhhh
Q 008957           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF--------KLNNFQDGVLSSAFMVGLLVASP  135 (547)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~~~~~  135 (547)
                      .+.+.+...+++.+.+|...++..                 .|-+...+        +.++...+.+..+..+|.++|++
T Consensus        40 fk~i~iAG~GfftDsYDlF~I~lV-----------------t~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl  102 (538)
T KOG0252|consen   40 FKAIIIAGMGFFTDSYDLFSISLV-----------------TKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQL  102 (538)
T ss_pred             HHHHHHhhhhhcccchhhhhHHHH-----------------HHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHH
Confidence            345666677788888998888752                 13333322        24556678999999999999999


Q ss_pred             hhhhhhhhcCCceehHHHHHHHHHHHHhhhccc-------cHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhh
Q 008957          136 IFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL  208 (547)
Q Consensus       136 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~  208 (547)
                      ++|+++||+|||+++...+++..+++++++++.       -.+++...|++.|+|.|+.+|.+.+..+|...++.||..+
T Consensus       103 ~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~i  182 (538)
T KOG0252|consen  103 FFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFI  182 (538)
T ss_pred             HHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccccee
Confidence            999999999999999999999999999888753       2567899999999999999999999999999999999999


Q ss_pred             hHHHHhhhhhhhhhhhhHHhhcC-------------C--CCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccc
Q 008957          209 SMFYMCIPTGVALGYVYGGVVGS-------------H--LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  273 (547)
Q Consensus       209 ~~~~~~~~~G~~~g~~l~~~l~~-------------~--~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  273 (547)
                      +.+.+..+.|.+.|.+++-.+..             +  .=||..|.+.+++.+.+....+ .+||+.+.....+++...
T Consensus       183 aavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl-~M~Et~~Y~al~~~~~~~  261 (538)
T KOG0252|consen  183 AAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL-KMPETARYTALVSKKLKQ  261 (538)
T ss_pred             EEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhHHHHhhcCHhh
Confidence            99999999999988887765431             1  1399999998887765444333 236655443111100000


Q ss_pred             cccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhc
Q 008957          274 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG  353 (547)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (547)
                      ..++..+..+.         .++++...    +....+..+..+.+..-+... .-+.+......++..-..++....+.
T Consensus       262 a~~d~~k~~~~---------~~~~~~~~----~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~  327 (538)
T KOG0252|consen  262 AAGDMKKVLSV---------DIEAESTA----ESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQ  327 (538)
T ss_pred             hhhcccccccc---------ccchhhcc----ccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHH
Confidence            00000000000         00000000    000000001111121212111 22455556667777777777777777


Q ss_pred             cceeEeeccCchhh--------H-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 008957          354 PKAGYNIYHMSNAD--------M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS--  422 (547)
Q Consensus       354 p~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  422 (547)
                      ..++++.+-.+...        . .-..+...+.++|..+...++|++||+     +..+.+.++..+..+.+....+  
T Consensus       328 s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-----~iq~~GF~~~~i~~~~~~~~y~~~  402 (538)
T KOG0252|consen  328 SVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-----YIQLMGFFIMTIFFFVIAGPYNQL  402 (538)
T ss_pred             HHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-----HHHHhhHHHHHHHHHHHcCCcccc
Confidence            66666433222111        1 112344466777999999999999999     6666666666666555443322  


Q ss_pred             --HHHHHHHHHHHHHHHhhcCccceeee-ecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc-----ccchhHHHH
Q 008957          423 --LYGFLALFTVGELLVFATQAPVNYVC-LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-----HVNNWRKTT  494 (547)
Q Consensus       423 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~-----~~~~~~~~~  494 (547)
                        .....++..+..++....-.....++ ++.+|.+.|++..|+....... |++++...++++.+     ..+ .+..+
T Consensus       403 ~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~-GAivg~~~F~~~t~~~yp~~~g-~~~v~  480 (538)
T KOG0252|consen  403 ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKA-GAIVGAFGFLYLTDHNYPPNIG-VRNVF  480 (538)
T ss_pred             cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccc-hHHHHHHHhhHhhhccCCcccc-chHHH
Confidence              33455666666666665544444444 4555669999999999655555 99999999999888     443 67888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc-cccccchhhhhhcc
Q 008957          495 LALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQISL  530 (547)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  530 (547)
                      ++++.+.+++.+..+   .+|| +++.+++++++.+.
T Consensus       481 ~i~~~~~~~gi~~T~---l~pEtk~~~leei~~e~~~  514 (538)
T KOG0252|consen  481 IILAGCMLLGILFTL---LIPETKGKSLEEISNEEES  514 (538)
T ss_pred             HHHHHHHHHhHheeE---EeecccccCHHHhcChhhc
Confidence            888888877777666   4455 77888777655443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.8e-28  Score=222.68  Aligned_cols=329  Identities=17%  Similarity=0.155  Sum_probs=269.6

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhh---ccccHHHHHHHHHHh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLV  180 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~a~~~~~l~~~r~l~  180 (547)
                      .+|.+++.|++|..|.+++..+++.|+.+++++.|++.+|+|+|+.+++|+.++++++.+..   ...+|..++++-++.
T Consensus        35 Lip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFil  114 (422)
T COG0738          35 LIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFIL  114 (422)
T ss_pred             hHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence            44999999999999999999999999999999999999999999999999999999999984   667899999999999


Q ss_pred             hhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC-------------------CCchhHHHH
Q 008957          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------------------LNWRYAFWG  241 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------------------~gwr~~f~~  241 (547)
                      |.|.+...+.+..+++...++++-.+.+++.+..+++|.++||++++.+..+                   ..||++|..
T Consensus       115 a~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~  194 (422)
T COG0738         115 ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLI  194 (422)
T ss_pred             HhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHH
Confidence            9999999999999999999998899999999999999999999999987652                   248999999


Q ss_pred             HHHHHHHHHHHHHhhc-cCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhh
Q 008957          242 EAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS  320 (547)
Q Consensus       242 ~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (547)
                      .+...+++.+...... |+.....  +++.+.                                            ++  
T Consensus       195 ~~~~lvll~v~~~~~k~p~~~~~~--~~~~~~--------------------------------------------~~--  226 (422)
T COG0738         195 LAGLLVLLAVLILLSKLPDLQVAA--PSLGAS--------------------------------------------GS--  226 (422)
T ss_pred             HHHHHHHHHHHHHhccCCcCCccc--cccccc--------------------------------------------cc--
Confidence            9887777766665544 3311110  000000                                            00  


Q ss_pred             hhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhh-HhhhhhhcccccccceeeeeeeecccccchhH
Q 008957          321 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNA  399 (547)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  399 (547)
                      ....+++++|.++...++.+++.........|++.|+.+..+.+..+ ....+..+++.++|++++.++..|+...    
T Consensus       227 ~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~----  302 (422)
T COG0738         227 AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE----  302 (422)
T ss_pred             chHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH----
Confidence            13567889999999999999999999999999999999976666544 3666788899999999999999999888    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccch
Q 008957          400 FKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  479 (547)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~  479 (547)
                       +.+....++....++.....++.. .+....+.+++.+..+|.+.+...+..+ ++...+.++.  ++.++|+++-|++
T Consensus       303 -k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l--~maivGGAiiP~l  377 (422)
T COG0738         303 -KYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLL--VMAIVGGAIIPPL  377 (422)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceee--eeheecchHHHHH
Confidence             677777777777777766666644 4456667788899999999999998888 5555555543  4455688888999


Q ss_pred             hhhhhcccch
Q 008957          480 VGVLQDHVNN  489 (547)
Q Consensus       480 ~g~l~~~~~~  489 (547)
                      .|++.|..|.
T Consensus       378 ~G~i~d~~g~  387 (422)
T COG0738         378 QGVIADMFGI  387 (422)
T ss_pred             HHHHHHhhhh
Confidence            9999998874

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.96  E-value=1.6e-32  Score=274.71  Aligned_cols=384  Identities=19%  Similarity=0.222  Sum_probs=252.6

Q ss_pred             ccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc---cHHHHHHHHHHhhhhhhhhhhccc
Q 008957          116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFWSIAICRMLVGVGEASFISLAA  192 (547)
Q Consensus       116 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~---~~~~l~~~r~l~G~~~~~~~~~~~  192 (547)
                      ..+.+++.+...+|..+|++++|+++||+|||++++++.++..+++++.++++   |++.++++|+++|++.|...+...
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34578999999999999999999999999999999999999999999999999   999999999999999999999999


Q ss_pred             ccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC---CchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCc
Q 008957          193 PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  269 (547)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~---gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  269 (547)
                      .++.|..|+++|++..++.+.+..+|.+++..++..+....   +||+.+++.++++++..+.. ++.||++++...+++
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~  203 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGR  203 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccceeccccc
Confidence            99999999999999999999999999999988876664433   49999999999887765544 556888776543332


Q ss_pred             cccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccch-----hHHHHHHHHHHHH
Q 008957          270 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV-----YVVNVLGYIAYNF  344 (547)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  344 (547)
                      .+...  +..++.++.+..+++.++..++.++.++.+              .+++++++++.     +....+..+....
T Consensus       204 ~~~A~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~  267 (451)
T PF00083_consen  204 DEEAE--KVLRKLRGKEIEDEEIEEIKAEKKESQESK--------------ASWRDLFRNKKYRKRLLIALLLQFFQQFS  267 (451)
T ss_pred             ccccc--cccccccccccccccccccccccccccccc--------------eeeeecccccccccccccccccccccccc
Confidence            22111  111111111111111111111111110000              22333444322     2222222222223


Q ss_pred             HHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHH-----H
Q 008957          345 VIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-----C  419 (547)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  419 (547)
                      ......++.|.+.++.+..+.  .....+..+..+++.+++.++.||+|||     +.++.+.....++.+...     .
T Consensus       268 g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr-----~~~i~~~~~~~~~~~~~~~~~~~~  340 (451)
T PF00083_consen  268 GINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRR-----KLLIIGLLLMAICSLILGIIFFLG  340 (451)
T ss_pred             ccccccccccccccccccccc--cccccccccccccccccccccccccccc-----cccccccccccccccccccccccc
Confidence            334555666766665443333  3334455677788888888999999999     566555554444433332     1


Q ss_pred             hhh----HHHHHHHHHHHHHHHhhcCccce-eeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHH
Q 008957          420 LSS----LYGFLALFTVGELLVFATQAPVN-YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  494 (547)
Q Consensus       420 ~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  494 (547)
                      .++    ....+++..+...+......+.. .+..|.+|++.|+++.|+.....++ +.+++|.+...+.+..+.+ ..+
T Consensus       341 ~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i-~~~i~~~~~~~~~~~~~~~-~~~  418 (451)
T PF00083_consen  341 VSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI-GGFIIPFLFPYLFNNLGGW-GVF  418 (451)
T ss_pred             cccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc-ccc
Confidence            122    12223333333334443444444 5568888889999999999888777 7788898888888776523 455


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc-cccccchhhhh
Q 008957          495 LALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQ  527 (547)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  527 (547)
                      .+.+++.++..+..  ..++|| ++++.+|.++.
T Consensus       419 ~i~~~~~~i~~i~~--~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  419 LIFAGVCLIAIIFV--YFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             hhhHHHHHHHHhhe--eEEEeeCCCCCHHHHHhh
Confidence            55555444433322  235677 78888887654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.96  E-value=1e-28  Score=241.04  Aligned_cols=340  Identities=13%  Similarity=0.020  Sum_probs=240.0

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCc----eehHHHHHHHHHHHHhhhccccHHHHHHHHH
Q 008957          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF----RLIGVGLSVWTFATAGCGSSFDFWSIAICRM  178 (547)
Q Consensus       103 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~  178 (547)
                      |.+|.+.+|+|.|..++|++.+++.++..++++++|++.||+|||    +.+.++.++.  .......++++|.+++.|+
T Consensus        25 p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~  102 (382)
T PRK11128         25 PFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIG  102 (382)
T ss_pred             hhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHH
Confidence            455778899999999999999999999999999999999999994    3333222222  2233445689999999999


Q ss_pred             HhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhcc
Q 008957          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (547)
Q Consensus       179 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  258 (547)
                      +.|++.+...+...+++.++  +++|+++.+......++|.++||++++++.+++|||..|++.++..++..+ ..+..|
T Consensus       103 l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~  179 (382)
T PRK11128        103 LFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQLLRP  179 (382)
T ss_pred             HHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHccC
Confidence            99999998888888887776  456889999999999999999999999999999999999988765444333 333334


Q ss_pred             CccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHH
Q 008957          259 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  338 (547)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (547)
                      +..+.    ++++..                              .            ++...++++++|+|.++...+.
T Consensus       180 ~~~~~----~~~~~~------------------------------~------------~~~~~~~~~i~~~~~~~~~~~~  213 (382)
T PRK11128        180 TIMPQ----GESRQQ------------------------------E------------SAGWPAWKALLKEPTVWRFLLC  213 (382)
T ss_pred             CCCCc----cccccc------------------------------c------------ccccchHHHHHcChhHHHHHHH
Confidence            32110    000000                              0            0001345678899999988777


Q ss_pred             HHHHHHHHHHHhhhccceeEeeccCchhh-HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHH
Q 008957          339 YIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (547)
Q Consensus       339 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (547)
                      .++..........+.|.|.++ .+.+... ..+..+..++.++..++.+++.||+++|     +.+..+.+...+..++.
T Consensus       214 ~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~l~~~~~~~~~~~~~~  287 (382)
T PRK11128        214 VSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----DLLLLSAICGVVRWGLM  287 (382)
T ss_pred             HHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHH
Confidence            777766666677777877765 4555433 2333455567788888889999999988     56655555555555555


Q ss_pred             HHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHH
Q 008957          418 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  497 (547)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  497 (547)
                      ...++.+..++..++.+++.+...+....+..+. +++++++..+..+...+..|..+||.+.|.+.|..|.  ..++..
T Consensus       288 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~--~~~~~~  364 (382)
T PRK11128        288 GSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA--GVFWVM  364 (382)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHH
Confidence            5556666666666777776666666666555554 5666788888886555555778899999999998863  355555


Q ss_pred             HHHHH
Q 008957          498 TSIFF  502 (547)
Q Consensus       498 ~~~~~  502 (547)
                      +++.+
T Consensus       365 ~~~~~  369 (382)
T PRK11128        365 ALVAL  369 (382)
T ss_pred             HHHHH
Confidence            54443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.96  E-value=3.1e-28  Score=271.65  Aligned_cols=334  Identities=12%  Similarity=0.034  Sum_probs=241.0

Q ss_pred             cccccccccCc--cchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhh---hccccHHHHHHHHHHh
Q 008957          106 SGIQGDFKLNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLV  180 (547)
Q Consensus       106 ~~i~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~  180 (547)
                      +.+..+++.+.  ...+++.+++.++++++++++|+++||+|||++++++.++.+++.++.   ..+++++.++++|+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  113 (1146)
T PRK08633         34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLL  113 (1146)
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            44555566544  347999999999999999999999999999999999987766655543   3457899999999999


Q ss_pred             hhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC---------CCchhHHHHHHHHHHHHHH
Q 008957          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---------LNWRYAFWGEAILMLPFAV  251 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~---------~gwr~~f~~~~~~~~~~~~  251 (547)
                      |++.+...++..+++.|++|+++|++++++...+..+|.++|+++++++...         .+|++.+.+..+...++.+
T Consensus       114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1146)
T PRK08633        114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGL  193 (1146)
T ss_pred             HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998765         2455555555444444444


Q ss_pred             HHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccch
Q 008957          252 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  331 (547)
Q Consensus       252 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (547)
                      +..+..|+.+......++.+..                                        ...+.....++.+++++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~l~~~~~  233 (1146)
T PRK08633        194 IFAYRLPKVPAAAPEVFDKKKY----------------------------------------LFPKLLWRNLKLLRSDRV  233 (1146)
T ss_pred             HHHhcCcCCCCCCccccccccc----------------------------------------ccHHHHHHHHHHHhcCcH
Confidence            4444445533221100000000                                        001112245667788888


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhccceeEeeccCchh-hH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHH
Q 008957          332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  409 (547)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  409 (547)
                      ++...+..++.......+..++|.|+.+..+.+.. .. .+.....++.+++.++.+++.||++++     ..+..+.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----~~~~~~~~~  308 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----GLVPLGALG  308 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----cchhHHHHH
Confidence            88877777777777777778888888887777654 33 445566788889999999999999887     444444444


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc
Q 008957          410 GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  485 (547)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~  485 (547)
                      ..+..++.....+.+..++..++.+++.+...++...++.+..|++.||+++|+.+.+.++ |.++++.+.+.+..
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~l-g~~~~~~~~~~l~~  383 (1146)
T PRK08633        309 LALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNV-GMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            4444444444445566666667777777777777777888888899999999999877776 76666656555543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.95  E-value=5.9e-27  Score=230.30  Aligned_cols=368  Identities=11%  Similarity=0.038  Sum_probs=236.6

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      .++.+..|+|-+ .+..|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|+++++-++|...++.+..+.|+|
T Consensus        66 ~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvg  144 (599)
T PF06609_consen   66 ILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVG  144 (599)
T ss_pred             HHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHh
Confidence            347889999864 7789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc-cCccC
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK-PLQLK  262 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~-p~~~~  262 (547)
                      .|.... ....++|..|.|.|+...++.....-....+++.++..+..+.+|||.|++.++...+.+++.+++. |.+.+
T Consensus       145 aG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~  223 (599)
T PF06609_consen  145 AGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRA  223 (599)
T ss_pred             hHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence            876654 5666899999999998888887777666667888888777778999999999998777666555443 33221


Q ss_pred             CCCCCCccccccccccccCCcCCCCCcccc--cccccchhhhhcccccchh------------------hhhhh---hhh
Q 008957          263 GFAPAESGKAQVVASVSEGSEASNLNDHVS--EDISDQASERSIKSIGESR------------------FLNQL---SQF  319 (547)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------------~~~~~---~~~  319 (547)
                      ..+.++..++    +...+.+....-.-..  ..+.-..........+|+.                  .++..   ++.
T Consensus       224 ~~~~~~~s~~----~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~P  299 (599)
T PF06609_consen  224 QLHGRKLSKR----EQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDP  299 (599)
T ss_pred             hhccccCcHH----HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCC
Confidence            1111110000    0000000000000000  0000000000000001100                  00111   112


Q ss_pred             hhhhHhhccc-chhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchh----hHhhhhhhcccccccceeeeeeeecccc
Q 008957          320 SQDTKVLLQE-KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA----DMMFGGVTIVCGIVGTISGGFILDQMGA  394 (547)
Q Consensus       320 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~  394 (547)
                      .. +.+++++ +.+...++..++....++....+.|......++.++.    ..........+..++.++.|.+..++++
T Consensus       300 l~-P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~  378 (599)
T PF06609_consen  300 LF-PHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRH  378 (599)
T ss_pred             cC-CHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccc
Confidence            22 3457776 4566666677777777778777778776666655542    1233344556667777778888877765


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhc
Q 008957          395 TISNAFKLLSAATFLGAISCLTAF--CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  472 (547)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g  472 (547)
                      -+    +.++.+..+..+++-.+.  -.++....+.+.++.+++.+....+......-..|++.-+++.|+..++..+ |
T Consensus       379 ~K----w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~-G  453 (599)
T PF06609_consen  379 IK----WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSI-G  453 (599)
T ss_pred             hh----HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHH-h
Confidence            43    444444444333322222  2234445556667777777766666666666678889999999998766666 7


Q ss_pred             CCCccchhhhh
Q 008957          473 DVPSSPLVGVL  483 (547)
Q Consensus       473 ~~~~~~~~g~l  483 (547)
                      +.+|..+...+
T Consensus       454 GsIg~aIy~~I  464 (599)
T PF06609_consen  454 GSIGYAIYNAI  464 (599)
T ss_pred             hHHHHHHHHHH
Confidence            67676655444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.95  E-value=2.1e-28  Score=242.23  Aligned_cols=355  Identities=16%  Similarity=0.062  Sum_probs=224.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhh---ccccHH-HHHHHHHHhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFW-SIAICRMLVG  181 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~a~~~~-~l~~~r~l~G  181 (547)
                      ..+.+++|++..+.|++.+++.++..++++++|+++||+|||++++++..+.+++.....   .++... ......++.+
T Consensus        35 ~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (420)
T PRK09528         35 IWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGG  114 (420)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677999999999999999999999999999999999999999887766655443221   111110 0112222233


Q ss_pred             hhhhhhhhcccccccccCC--CCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          182 VGEASFISLAAPFIDDNAP--VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      +..+.........+.++.+  .+++++.++......++|..++|++++.+.+ .+|++.|++.++++++..++.++..|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        115 IYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPD  193 (420)
T ss_pred             HHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccccc
Confidence            3333333333333333333  3457888899999999999999999998876 489999999988887766666555444


Q ss_pred             ccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHH
Q 008957          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (547)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (547)
                      +++...   ..+..    .              +        ++ +           +...++.+..+|+|.++...+..
T Consensus       194 ~~~~~~---~~~~~----~--------------~--------~~-~-----------~~~~~~~~~~l~~~~~~~l~l~~  232 (420)
T PRK09528        194 APSTAK---VANAL----G--------------A--------NA-S-----------AVSLKDALALLKLPKFWFLVLYV  232 (420)
T ss_pred             ccchhh---hccch----h--------------c--------cc-c-----------cccHHHHHHHccCCCeEeehHHH
Confidence            211100   00000    0              0        00 0           00012345577888777655554


Q ss_pred             HHHHHHHHHHhhhccceeEeec---cCchhh-HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHH
Q 008957          340 IAYNFVIGAYSYWGPKAGYNIY---HMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  415 (547)
Q Consensus       340 ~~~~~~~~~~~~~~p~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (547)
                      ++..........+.|.|+.+..   +.+... ..+..+..++.+++.++.|++.||+++|     +.+..+..+..+..+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~l~~~~~~  307 (420)
T PRK09528        233 IGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----NALLLAGTIMAVRII  307 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----hhhHHHHHHHHHHHH
Confidence            4444444444445566554432   222212 2334455667778899999999999998     555555555444444


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHH-HHHHHHhhcCCCccchhhhhhcccchhHHHH
Q 008957          416 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI-STVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  494 (547)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~-~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  494 (547)
                      +....++.+..+....+.+.......+....+..+..|++.+++..+. .+....+ |.+++|.+.|++.|..| |+..|
T Consensus       308 l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l-g~~ig~~~~G~l~~~~G-~~~~f  385 (420)
T PRK09528        308 GSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQL-GAVFLSTLAGNLYDSIG-FQGTY  385 (420)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHH-HHHHHHHHHHHHHHhhC-chHHH
Confidence            444455666555555555555554445555666777888888887665 4444555 88899999999999876 88888


Q ss_pred             HHHHHHHHHHHHHHH
Q 008957          495 LALTSIFFLAAGIWF  509 (547)
Q Consensus       495 ~~~~~~~~~~~~~~~  509 (547)
                      .+.+++.++..++..
T Consensus       386 ~~~~~~~~i~~~~~~  400 (420)
T PRK09528        386 LILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887777665554433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.95  E-value=2.1e-27  Score=235.11  Aligned_cols=352  Identities=16%  Similarity=0.142  Sum_probs=269.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc-----cccHHHHHHHHHHh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLV  180 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~~~~~l~~~r~l~  180 (547)
                      +-+..++.-|+...+++..+..+...+.++++|.++||++|||+++.+-++.++..++.++     ..+.+.+++.-++.
T Consensus        34 ~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~  113 (524)
T PF05977_consen   34 AWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLL  113 (524)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            4455566678889999999999999999999999999999999999999887766555443     24788999999999


Q ss_pred             hhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCc
Q 008957          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  260 (547)
                      |++.+...|+..+++.|..|+++...+.++.+...++..++||.++|.+....|-.+.|.+.++..++..+......++.
T Consensus       114 g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~  193 (524)
T PF05977_consen  114 GIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP  193 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            99999999999999999999999999999999999999999999999999888989999998776555444333332221


Q ss_pred             cCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHH
Q 008957          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (547)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (547)
                      .+.   +..++                                          +..++....++.+.++|.+...++..+
T Consensus       194 ~~~---~~~~e------------------------------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~  228 (524)
T PF05977_consen  194 PPS---SLPRE------------------------------------------RFFSALREGLRYVRSSPPLRSVLLRSF  228 (524)
T ss_pred             ccc---ccchh------------------------------------------hhhhhHHHHHHHHhcchHHHHHHHHHH
Confidence            100   00000                                          112233355666777787776666666


Q ss_pred             HHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008957          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (547)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (547)
                      +.+.....+...+|.+.++..+.+.... .+.+..+++.++|.++.+++.+|++++     +++..+.+..+...+....
T Consensus       229 ~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~-----~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  229 LFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR-----RLVLLASLLFALALLLLAL  303 (524)
T ss_pred             HHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-----hhhHHHHHHHHHHHHHHhc
Confidence            6666666666778988888777776554 455677889999999988888888776     5666666666666666666


Q ss_pred             hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHH
Q 008957          420 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  499 (547)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  499 (547)
                      .++.+...+.+++.|++.........+..+...|++.||++++++.+.... +..+|..+.|.+.+..| ....+.+.++
T Consensus       304 ~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g-~~~lGsll~G~la~~~g-~~~al~~a~~  381 (524)
T PF05977_consen  304 SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFG-GMPLGSLLWGFLADHFG-VRTALLIAGA  381 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-HHHHHHHHHH
Confidence            677777777888888888877777888888999999999999999877776 77889999999999876 4456666555


Q ss_pred             HHHHHHHHHH
Q 008957          500 IFFLAAGIWF  509 (547)
Q Consensus       500 ~~~~~~~~~~  509 (547)
                      +.+++.++..
T Consensus       382 ~lll~~~~~~  391 (524)
T PF05977_consen  382 ALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHH
Confidence            5444444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00889 2A0110 nucleoside transporter

Probab=99.95  E-value=1.6e-27  Score=234.10  Aligned_cols=347  Identities=10%  Similarity=0.019  Sum_probs=233.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCC-ceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      +.+.+++|++..|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++.
T Consensus        27 ~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  106 (418)
T TIGR00889        27 SYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAY  106 (418)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            67788899999999999999999999999999999999965 77888889998899888899999999999999999987


Q ss_pred             hhhhhccccccc--------ccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          185 ASFISLAAPFID--------DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       185 ~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      +...+...++..        |......|.+.+|      .+|.++|+++++.+....+|+ +|++.++..++..+. .+.
T Consensus       107 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~  178 (418)
T TIGR00889       107 MPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALT  178 (418)
T ss_pred             ccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-Hhc
Confidence            766665554432        2233334555555      367888898888874433455 355666655554443 344


Q ss_pred             ccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHH
Q 008957          257 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  336 (547)
Q Consensus       257 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (547)
                      .||.++..  ++++...                                        .  +....+.+.++|+|.++...
T Consensus       179 ~~e~~~~~--~~~~~~~----------------------------------------~--~~~~~~~~~~~k~~~~~~~~  214 (418)
T TIGR00889       179 LPDIPVAK--STAKMSI----------------------------------------K--VMLGLDAFILFKNKRMAIFF  214 (418)
T ss_pred             CCCCCCCc--cccccCH----------------------------------------H--HHhhhhHHHHhcCCCeeeHH
Confidence            56532110  0000000                                        0  00001234577888887777


Q ss_pred             HHHHHHHHHHHHHhhhccceeEeeccCc--------hhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHH
Q 008957          337 LGYIAYNFVIGAYSYWGPKAGYNIYHMS--------NADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  408 (547)
Q Consensus       337 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  408 (547)
                      +..++..........+.|.+.++.+...        ........+..+..+++.++.+++.||+|+|     +.+..+.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----~~l~~~~~  289 (418)
T TIGR00889       215 FFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----KVMLLSLV  289 (418)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHH
Confidence            7666665555455556666665533111        1112344556677888889999999999998     66666665


Q ss_pred             HHHHHHHHHHHhh-h---HHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhh
Q 008957          409 LGAISCLTAFCLS-S---LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  484 (547)
Q Consensus       409 ~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~  484 (547)
                      +..+...+..... +   .+..++..++.+.+.+...+.....+.+..|++.|+++.|+.+...+.+|.++||.+.|++.
T Consensus       290 ~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~  369 (418)
T TIGR00889       290 AWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV  369 (418)
T ss_pred             HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            5555443333322 1   23334445556565555556666777888899999999999975444448889999999999


Q ss_pred             cccc-----hhHHHHHHHHHHHHHHHHHHH
Q 008957          485 DHVN-----NWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       485 ~~~~-----~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      |+.|     +|+..|.+.+++.+++.++..
T Consensus       370 ~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~  399 (418)
T TIGR00889       370 EKMFAYGTFDWQTMWLFFAGYIAILAVLFM  399 (418)
T ss_pred             HHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            9865     377888877777666554444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.95  E-value=2.6e-27  Score=229.39  Aligned_cols=314  Identities=13%  Similarity=0.070  Sum_probs=229.5

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc-----CCcee-hHHHHHHHHHHHHhhhcc---ccHHHH
Q 008957          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSI  173 (547)
Q Consensus       103 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~a---~~~~~l  173 (547)
                      +.+|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++...+.++.   .+.+.+
T Consensus         9 ~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l   86 (356)
T TIGR00901         9 NTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLL   86 (356)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence            45688999999999999999766 455555 99999999998     89986 567788888887777777   466677


Q ss_pred             HHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC--------chhHHHHHHHH
Q 008957          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--------WRYAFWGEAIL  245 (547)
Q Consensus       174 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g--------wr~~f~~~~~~  245 (547)
                      .+..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..+        ||..|++.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~  166 (356)
T TIGR00901        87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL  166 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence            7888888999998999999999999999999999999999999999999999999988888        99999999988


Q ss_pred             HHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHh
Q 008957          246 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  325 (547)
Q Consensus       246 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (547)
                      .++..+..++..||+...  ++++ +                                          +..++..+.++.
T Consensus       167 ~l~~~~~~~~~~~e~~~~--~~~~-~------------------------------------------~~~~~~~~~~~~  201 (356)
T TIGR00901       167 ILPGLLVTLFLAKEPQED--ASVP-K------------------------------------------PLTQAVLKPIRE  201 (356)
T ss_pred             HHHHHHHHHHhccCCCcc--cccc-h------------------------------------------hHHHHHHHHHHH
Confidence            777665555555552111  0000 0                                          000011234556


Q ss_pred             hcccch---hHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhh-cccccccceeeeeeeecccccchhHH
Q 008957          326 LLQEKV---YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVT-IVCGIVGTISGGFILDQMGATISNAF  400 (547)
Q Consensus       326 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~  400 (547)
                      +++++.   ++...+..++.....+....+.|.|+++ .+.+.... ...... .++.+++.++++++.||+++|     
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----  275 (356)
T TIGR00901       202 FFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-----  275 (356)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-----
Confidence            666664   6666666666777777788888988887 66665443 223222 356778899999999999988     


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHH
Q 008957          401 KLLSAATFLGAISCLTAFCL-----------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIH  469 (547)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~  469 (547)
                      +.+..+.++..+...+....           ++.+......++.+++.+...+....+..+..|+++||+..|+.+...+
T Consensus       276 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       276 YALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            44444444444333322221           2234444555566777778888889999999999999999999876543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.1e-26  Score=207.58  Aligned_cols=344  Identities=14%  Similarity=0.063  Sum_probs=270.1

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhh
Q 008957          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (547)
Q Consensus       103 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  182 (547)
                      |.+++|++|+|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.++|.++-... +.+.++.+-.+.|.
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~  111 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGA  111 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Confidence            67899999999999999999999999999999999999999999999999999999999999887 78889999999999


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC-CchhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      |.+...+..+.++-+.+|+| -+..+|+|....++|..+++.++..+.++. |||.....-+.++++..++++   |...
T Consensus       112 gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl---Pq~~  187 (395)
T COG2807         112 GIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL---PQAL  187 (395)
T ss_pred             hHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh---hhcc
Confidence            99999999999999999986 899999999999999999999998888777 799999999988887766655   3321


Q ss_pred             CCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHH
Q 008957          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (547)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (547)
                      +.+....+.+ .                                               .+-..++|+|.-|...+.+.+
T Consensus       188 r~~~~~~~~~-~-----------------------------------------------~~~~~vw~~~~aW~vtLfmGl  219 (395)
T COG2807         188 REQAASIATK-L-----------------------------------------------VSVRKVWRSPLAWQVTLFMGL  219 (395)
T ss_pred             cccccccccc-c-----------------------------------------------ccccccccCchhHHHHHHHHh
Confidence            1110000000 0                                               112457899999999999999


Q ss_pred             HHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008957          342 YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  421 (547)
Q Consensus       342 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (547)
                      +++.+|....|+|.++.+.+-....+..+.++..+.+++..+....+.+|...++    +..+....+..+..+...+.+
T Consensus       220 qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r----~~~~~~~~~~l~G~~G~~~~P  295 (395)
T COG2807         220 QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR----PLVVLALLLMLVGLVGLLLAP  295 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999997665555556667778888999999999998755443    444443333333333322222


Q ss_pred             --hHHHHHHHHHHHHHHHhhcCccceeeeecccCC-cchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHH
Q 008957          422 --SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALT  498 (547)
Q Consensus       422 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~  498 (547)
                        ..+.+   .++.|++.+..++.....+...... +..+.-.|+.+.+.+++. ..||.++|++.|.+|+|...+...+
T Consensus       296 ~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllA-a~GP~l~G~lhDa~gsw~~~~~~l~  371 (395)
T COG2807         296 GQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLA-AFGPWLFGFLHDATGSWSAPLVLLA  371 (395)
T ss_pred             hhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHH-hhhhhhHhHHHHhcCChHHHHHHHH
Confidence              22222   4666777777777666666555444 778888888888888866 5599999999999999988877777


Q ss_pred             HHHHHHHHH
Q 008957          499 SIFFLAAGI  507 (547)
Q Consensus       499 ~~~~~~~~~  507 (547)
                      .+.+...+.
T Consensus       372 ~~~i~m~i~  380 (395)
T COG2807         372 LATLLMLIF  380 (395)
T ss_pred             HHHHHHHHH
Confidence            665544443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=4.3e-27  Score=210.57  Aligned_cols=357  Identities=14%  Similarity=0.058  Sum_probs=226.1

Q ss_pred             ccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhccc
Q 008957          113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  192 (547)
Q Consensus       113 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~  192 (547)
                      +.+....|.+.+.|++++.+.++.+|.++||+|||++++++++..++...+.+.+.||..+++.|++.|+..| ...++.
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r  142 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR  142 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence            3455677999999999999999999999999999999999999999999999999999777778999999998 556799


Q ss_pred             ccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC---CCCchhHHHHHHHHHHHH----HHHHHhhccCccCCCC
Q 008957          193 PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---HLNWRYAFWGEAILMLPF----AVLAFVIKPLQLKGFA  265 (547)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~---~~gwr~~f~~~~~~~~~~----~~~~~~~~p~~~~~~~  265 (547)
                      ++++|.+++|+|+++++.+...+++|.++||.+|+++..   ..| +.+|.....+..+.    .....++.||+.+.++
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk  221 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK  221 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence            999999999999999999999999999999999999986   222 22233222222222    2233445588765433


Q ss_pred             CCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHH
Q 008957          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (547)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (547)
                      ..+++....                  +....+.+  ..+.. +    .......+++......-....+.+-.+.+...
T Consensus       222 ~~~~~~~~~------------------~~~~~~~~--~~~~~-~----~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l  276 (451)
T KOG2615|consen  222 RNDEHSTLQ------------------EAADDRLA--LLKFA-R----IFKVAALRNPPLLDFISVLRIFGLHYFLYLEL  276 (451)
T ss_pred             hcccccchh------------------hhhhhhhh--hcchh-h----hhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence            221111000                  00000000  00000 0    00000011111110111223334445566666


Q ss_pred             HHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008957          346 IGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG  425 (547)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (547)
                      +....++.+.+....++.++.+..  -+....++.+.++.+.+..+..+.+......+.....++....++.........
T Consensus       277 ~s~~~~t~~~l~~~rfg~ss~~~G--~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~  354 (451)
T KOG2615|consen  277 FSGLENTVLFLTHGRFGYSSMQQG--KVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVV  354 (451)
T ss_pred             HHHHHhhHHHhhcCccCCChhhhe--eeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchh
Confidence            666667666666677777754431  222233344444555555554444321113444444444444444444445555


Q ss_pred             HHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHH
Q 008957          426 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  499 (547)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  499 (547)
                      ......+..+......+.++.+.....|++.||+.+|+..+...+ +-++||.+.|.+.....+-+..+...+.
T Consensus       355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~al-aRaiGPlv~g~i~~Ws~~~~~a~~~~~~  427 (451)
T KOG2615|consen  355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGAL-ARAIGPLVSGVIFSWSQGAQPAYIAWGA  427 (451)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHH-HHHhhhhhhheeEEEecCCCceeeehHH
Confidence            556666666777777777888888888889999999999887777 8899999998887654333333333333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.95  E-value=9.2e-27  Score=228.90  Aligned_cols=345  Identities=15%  Similarity=0.087  Sum_probs=229.0

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc-----CCce-ehHHHHHHHHHHHHhhhcc---ccHHHHH
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFR-LIGVGLSVWTFATAGCGSS---FDFWSIA  174 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~a---~~~~~l~  174 (547)
                      .+|.+-++.|+|.+++|++..+...  .+..+++|+++||+     |||| .++++.++.+++..+.++.   .+++.++
T Consensus        21 ~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~   98 (402)
T PRK11902         21 TLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLA   98 (402)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence            4477888889999999999777776  59999999999999     8876 7888888888888777776   4578888


Q ss_pred             HHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC-CCchhHHHHHHHHHHHHHHHH
Q 008957          175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLA  253 (547)
Q Consensus       175 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~~~~~~~  253 (547)
                      +..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||..|++.++..++..+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902         99 GLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999999999999999999998885 599999999988776655543


Q ss_pred             HhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhH
Q 008957          254 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  333 (547)
Q Consensus       254 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (547)
                       +..||++...   ++++..                                          .++..+++++++++|.++
T Consensus       179 -~~~~e~~~~~---~~~~~~------------------------------------------~~~~~~~~~~l~~~~~~~  212 (402)
T PRK11902        179 -LWAPEPEVPA---RPPRSL------------------------------------------GEAVVGPLRDFFSRRGAW  212 (402)
T ss_pred             -HhcCCCcccc---cccchh------------------------------------------HHHHHHHHHHHHhCcCHH
Confidence             3445432110   000000                                          001124566788999888


Q ss_pred             HHHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhh-hh-hcccccccceeeeeeeecccccchhHHHHHHHHHHHHH
Q 008957          334 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG-GV-TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  411 (547)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  411 (547)
                      ...+..++..........+.+.++.+..+.++...... .. ..++.+++.++++++.||+++|     +.+.....+..
T Consensus       213 ~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~-----~~l~~~~~~~~  287 (402)
T PRK11902        213 ALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY-----RSLMLFGVLQA  287 (402)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHH
Confidence            77766555554433333333344555566665444222 22 2345788899999999999987     44433333322


Q ss_pred             HHHHHH---HHh-hhHHHHHHHHHH----HHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhh
Q 008957          412 ISCLTA---FCL-SSLYGFLALFTV----GELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  483 (547)
Q Consensus       412 ~~~~~~---~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l  483 (547)
                      +..+..   ... ++.+...+...+    .++..+.........+.+..|.+.    .+..+....+ +.++++.+.|.+
T Consensus       288 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l-~~~~~~~~~G~l  362 (402)
T PRK11902        288 VSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASV-GRVYVGPTSGYL  362 (402)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHH-HHHHHHHHHHHH
Confidence            222111   122 233433333322    233333444445555555555444    3444333333 544445589999


Q ss_pred             hcccchhHHHHHHHHHHHHHHHHH
Q 008957          484 QDHVNNWRKTTLALTSIFFLAAGI  507 (547)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~  507 (547)
                      .|..| |...|...+++.+++.++
T Consensus       363 ~~~~G-~~~~f~~~~~~~~~~~~~  385 (402)
T PRK11902        363 VEAYG-WPGFYLMTVVIALPGLAL  385 (402)
T ss_pred             HHHhC-hHHHHHHHHHHHHHHHHH
Confidence            99987 777777776666555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.95  E-value=1.8e-26  Score=230.34  Aligned_cols=332  Identities=14%  Similarity=0.106  Sum_probs=239.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh----cCCce-ehHHHHHHHHHHHHhhhcccc------HHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIA  174 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~a~~------~~~l~  174 (547)
                      +.+.+++|+++.++|++.++..+..++..++.|+++||    +|||| .++.+.+..+++.+++.+.++      ...++
T Consensus        24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (437)
T TIGR00792        24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY  103 (437)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            66788899999999999999999999999999999997    67744 677888888888888776654      45677


Q ss_pred             HHHHHhhhhhhhhhhcccccccccC-CCCCcchhhhHHHHhhhhhhhhhhhhHHhhc-------CCCCchhHHHHHHHHH
Q 008957          175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFWGEAILM  246 (547)
Q Consensus       175 ~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-------~~~gwr~~f~~~~~~~  246 (547)
                      +.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+.       +..+||+.+.+.++++
T Consensus       104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~  183 (437)
T TIGR00792       104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG  183 (437)
T ss_pred             HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence            7888999998887777888899987 4688999999999988888877766654443       3468999999999988


Q ss_pred             HHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhh
Q 008957          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (547)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (547)
                      ++..++.++..||.+...  +++++                                           ...+..+.++.+
T Consensus       184 ~~~~~~~~~~~~e~~~~~--~~~~~-------------------------------------------~~~~~~~~~~~l  218 (437)
T TIGR00792       184 VVSLIICFFGTKERYSEI--PKNIE-------------------------------------------KKLSLKQIFKAL  218 (437)
T ss_pred             HHHHHHHHcCCEecCCCC--Ccccc-------------------------------------------cCCCHHHHHHHH
Confidence            887777666666532110  00000                                           000112446778


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHH
Q 008957          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (547)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  406 (547)
                      +++|.++...+..++..........+.+.|.+...+.+.....+..+..++.+++.++.+++.||+|+|     +.+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----~~~~~~  293 (437)
T TIGR00792       219 FKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----ILFAGG  293 (437)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHH
Confidence            899999888877777777777666677777776665333333444556788889999999999999988     555555


Q ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhhcCccceeeeecccC-------CcchhHHHHHHHHHHHhhcCCCccc
Q 008957          407 TFLGAISCLTAFCL-SSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVPSSP  478 (547)
Q Consensus       407 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~g~~~~~~~~~g~~~~~~  478 (547)
                      ..+..+..+..... ++.+...+..++.+++.+...+.......+..+       ++.+|...|+.+..... |..+++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-g~~lg~~  372 (437)
T TIGR00792       294 ILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL-GQALAGF  372 (437)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH-HHHHHHH
Confidence            54444444333332 344445555556666666555555556555543       46689999999887777 8888999


Q ss_pred             hhhhhhcccc
Q 008957          479 LVGVLQDHVN  488 (547)
Q Consensus       479 ~~g~l~~~~~  488 (547)
                      +.|++.+..|
T Consensus       373 i~g~ll~~~G  382 (437)
T TIGR00792       373 LVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHcC
Confidence            9999987654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.94  E-value=7.3e-27  Score=229.42  Aligned_cols=351  Identities=13%  Similarity=0.060  Sum_probs=231.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhh---hccc-----cHHHHHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSF-----DFWSIAICR  177 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a~-----~~~~l~~~r  177 (547)
                      +.+.+++|.+..+.|++.+++.++..++++++|+++||+|||+.++.+++..+++....   .+.+     .+..+++.|
T Consensus        27 ~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (396)
T TIGR00882        27 IWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGG  106 (396)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34567799999999999999999999999999999999999999998877766544332   1221     233456678


Q ss_pred             HHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       178 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      ++.|++.+...+....+..|..  +++++..+......++|.++||++++.+.+ .+||+.|++.+++.++..++.++..
T Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~  183 (396)
T TIGR00882       107 LYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAK  183 (396)
T ss_pred             HHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhC
Confidence            8888888887777777776643  335567788888899999999999998865 5999999999988887776665554


Q ss_pred             cCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHH
Q 008957          258 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  337 (547)
Q Consensus       258 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (547)
                      |+.+..    ++.+..    .                 +.+    + +           +...++.++++|+|.++...+
T Consensus       184 ~~~~~~----~~~~~~----~-----------------~~~----~-~-----------~~~~~~~~~~l~~~~~~~~~l  222 (396)
T TIGR00882       184 PKAPSS----ATVANA----L-----------------GAN----A-S-----------AFSLKLALELFRQRKFWMFVL  222 (396)
T ss_pred             CCCchh----hhhhcc----c-----------------ccc----c-C-----------CCCHHHHHHHHcCCcHHHHHH
Confidence            442111    000000    0                 000    0 0           000133567788888877666


Q ss_pred             HHHHHHHHHHHHhhhccceeEeecc---Cchhh-HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH
Q 008957          338 GYIAYNFVIGAYSYWGPKAGYNIYH---MSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (547)
Q Consensus       338 ~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  413 (547)
                      ..++..........+.|.|+++...   .+... .....+..+..+++.+..+++.||+++|     +.+..+..+..+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-----~~l~~~~~l~~l~  297 (396)
T TIGR00882       223 YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK-----NALLIAGTIMSVR  297 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHH
Confidence            5555555555554555666554332   22211 2333455566777788889999999998     5555555544444


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHH-HHHHHHhhcCCCccchhhhhhcccchhHH
Q 008957          414 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI-STVSIHIFGDVPSSPLVGVLQDHVNNWRK  492 (547)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~-~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  492 (547)
                      ..+....++.+...+..++.+.+.............+..+++.++++.+. .+....+ |.+++|.+.|++.|..| |..
T Consensus       298 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~l-g~~~~~~l~G~l~~~~G-~~~  375 (396)
T TIGR00882       298 IIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQL-AMIFLSTLAGNMYDSIG-FQG  375 (396)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHH-HHHHHHHhHHHHHHhcc-cHH
Confidence            44434445555555555555544433333333344555667777776665 4444555 88999999999999876 888


Q ss_pred             HHHHHHHHHHHHHHH
Q 008957          493 TTLALTSIFFLAAGI  507 (547)
Q Consensus       493 ~~~~~~~~~~~~~~~  507 (547)
                      .|.+.+++.++..++
T Consensus       376 ~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       376 AYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888776655544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=9e-27  Score=236.81  Aligned_cols=354  Identities=14%  Similarity=0.125  Sum_probs=235.0

Q ss_pred             ccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhh
Q 008957          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (547)
Q Consensus       109 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~  188 (547)
                      .+.+..+.....+..+++.+|.++|++++|+++||+|||+++++++++..++.++.++++|++.+++.|+++|++.++..
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence            35667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCC
Q 008957          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  268 (547)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  268 (547)
                      ..+..+++|++++++|+.++.+ ......|..++++.++++..  +|||.+++..+++++..++ ++++||++++.....
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g  265 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKG  265 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcC
Confidence            9999999999999999999999 77777777888888888887  7999999999999887766 556668776654333


Q ss_pred             ccccccc-cccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHH
Q 008957          269 SGKAQVV-ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG  347 (547)
Q Consensus       269 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (547)
                      +.+...+ .++..+.++...  +..+..+.....+..+        ....+....+..+++.|.+....+...+..+...
T Consensus       266 ~~~~a~~~l~~~a~~n~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~  335 (521)
T KOG0255|consen  266 RIDEAIKILKKIAKLNGRKL--SVKELLRLELLLRPLK--------LLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFS  335 (521)
T ss_pred             chHHHHHHHHHHHhhcCCCC--CcHHHHHHHHHhhHhh--------hhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHh
Confidence            3221111 111111110000  0000000000000000        0000001224556666644443333333332222


Q ss_pred             HHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhH---H
Q 008957          348 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL---Y  424 (547)
Q Consensus       348 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  424 (547)
                      ...+-++..... .+.+.  .....+.+.....+....+...|++|||     .....+.++..++++........   +
T Consensus       336 ~~y~gl~~~~~~-lg~~~--~~~~~~~~~~~~p~~~~~~~~~~~~gR~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (521)
T KOG0255|consen  336 LVYYGLSLNVSG-LGGNI--YLNFTLSGLVELPAYFRNGLLLPEFGRR-----PPLFLSLFLAGIGLLLFGWLPDDLGGW  407 (521)
T ss_pred             HHHHhhhhhhhh-cCchH--HHHHHHHHHHHhhHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHhhccchhH
Confidence            222222222222 22221  1222233336666667778889999998     66666666666665555544322   2


Q ss_pred             HHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc
Q 008957          425 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  485 (547)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~  485 (547)
                      ...+...+..++.+..+...+....+.+|+..|..+.+.......+ |.+++|.+.-....
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~-~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  408 LHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARL-GSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence            4566666667777777777788888889999999999999776666 88888866544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.94  E-value=8.6e-26  Score=224.73  Aligned_cols=397  Identities=13%  Similarity=0.037  Sum_probs=236.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh-cCCceehHHHHHHHHHHHHhhhccccHHH-HHHHHHHhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWS-IAICRMLVGVG  183 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~-l~~~r~l~G~~  183 (547)
                      ..+.+++|++..+.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++++... ++++|+++|+|
T Consensus        39 ~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig  118 (489)
T PRK10207         39 VFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVG  118 (489)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhc
Confidence            56788899999999999999998999999999999999 99999999999999999999999887555 55899999999


Q ss_pred             hhhhhhcccccccccCCCC--CcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          184 EASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      .|...|...++++|.+|++  +|++++++++.+.++|..+||.+++++.++.|||+.|++.++ +++..++.+.+.++..
T Consensus       119 ~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~  197 (489)
T PRK10207        119 NGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMV  197 (489)
T ss_pred             cccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhh
Confidence            9999999999999999877  457899999999999999999999999999999999999655 4454454444444322


Q ss_pred             CCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhh-------hhhhhhhhhhHhhcccchhHH
Q 008957          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFL-------NQLSQFSQDTKVLLQEKVYVV  334 (547)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  334 (547)
                      +..+++.+++...........  ..   -..-........+........-..       -..... ....+.+|+|.+..
T Consensus       198 ~~~~~~~~~~~~d~~~~~l~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~-~~~~~~~r~r~~~~  271 (489)
T PRK10207        198 KDIGSEPDHKPMSFSKLLLVL--LG---SVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREA-FKLDKTGRNKMFVA  271 (489)
T ss_pred             cccCCCCCccchhhhhHHHHH--HH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHH
Confidence            211100000000000000000  00   000000000000000000000000       000000 00013445555443


Q ss_pred             HHHH--HHHHHHHHHHHhhhccceeEee-----ccCchhhHhhhhhhcccccccceeeeeeeecccccch--hHHHHHHH
Q 008957          335 NVLG--YIAYNFVIGAYSYWGPKAGYNI-----YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATIS--NAFKLLSA  405 (547)
Q Consensus       335 ~~~~--~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~  405 (547)
                      ..+.  ...+...+....+.++.+.++.     .+.......+..+..+..++..++.+++.||+++|+.  .....+..
T Consensus       272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~  351 (489)
T PRK10207        272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTL  351 (489)
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence            3322  2223333333334455444421     1222111222233334454566667889999988742  11112222


Q ss_pred             HHHHHHHHHHHH-----HHh-----hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCC
Q 008957          406 ATFLGAISCLTA-----FCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  475 (547)
Q Consensus       406 ~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~  475 (547)
                      +.++..+..+..     ...     .+.++.+...++.+.+.....++....+.+..|++.+|.++|+.+..... |..+
T Consensus       352 G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~i-g~~l  430 (489)
T PRK10207        352 GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAA-AFLL  430 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHH
Confidence            223222222111     111     23555666777888888888888899999999999999999999877666 7776


Q ss_pred             ccchhhhhhc---------ccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          476 SSPLVGVLQD---------HVNNWRKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       476 ~~~~~g~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  510 (547)
                      +..+......         ..+.+...|...+...+++.++++.
T Consensus       431 g~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        431 GGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             HHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6655543311         0122445566666555554444443

>PTZ00207 hypothetical protein; Provisional

Probab=99.94  E-value=3.3e-26  Score=226.81  Aligned_cols=399  Identities=12%  Similarity=0.016  Sum_probs=258.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc------ccHHHHHHHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------FDFWSIAICRML  179 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------~~~~~l~~~r~l  179 (547)
                      +.+++++|+|..+++++.++. .....++++.|+++||+|||++++++.+++++++++++++      ++++.+++.|++
T Consensus        51 ~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l  129 (591)
T PTZ00207         51 GAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGL  129 (591)
T ss_pred             HHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence            889999999999999998874 4556788899999999999999999999999999999987      689999999999


Q ss_pred             hhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhh-hhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhcc
Q 008957          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (547)
Q Consensus       180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  258 (547)
                      .|+|.+...+.+...+.+|+| ++||+++|+...+.++|.++ +++..+++.  .+|++.|++.+++.++..++.+++.+
T Consensus       130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence            999999999999999999997 56999999999999999975 555555554  36999999999999998888887774


Q ss_pred             CccCCCC---C---CCccccccc---c----cc------------------------------c----------------
Q 008957          259 LQLKGFA---P---AESGKAQVV---A----SV------------------------------S----------------  279 (547)
Q Consensus       259 ~~~~~~~---~---~~~~~~~~~---~----~~------------------------------~----------------  279 (547)
                      +++....   +   +++++....   .    ++                              .                
T Consensus       207 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~l  286 (591)
T PTZ00207        207 LPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVL  286 (591)
T ss_pred             CCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            4332211   1   011110000   0    00                              0                


Q ss_pred             ----c----------CCcCC-CCCcccccccccchhhhhccccc-chhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHH
Q 008957          280 ----E----------GSEAS-NLNDHVSEDISDQASERSIKSIG-ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       280 ----~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                          .          ..+.. +.+.+..+..+...+....+... .........+.-+++.+.+++..+|++...++|..
T Consensus       287 ll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~  366 (591)
T PTZ00207        287 TVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCV  366 (591)
T ss_pred             HHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhh
Confidence                0          00000 00000000000000000000000 00000000001126667778899999999999888


Q ss_pred             HHHHHHhhhccceeEeeccC-chh--hHhhhhhhcccccccceeeeeeeecccccc----hhHHHHHHHHHHHHHHHHHH
Q 008957          344 FVIGAYSYWGPKAGYNIYHM-SNA--DMMFGGVTIVCGIVGTISGGFILDQMGATI----SNAFKLLSAATFLGAISCLT  416 (547)
Q Consensus       344 ~~~~~~~~~~p~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~----~~~~~~~~~~~~~~~~~~~~  416 (547)
                      .....+...+.++.+...+. ...  ...+.++.++++.+|++..|.+.....+|+    ..+...+.+..+ +.+..++
T Consensus       367 g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~ll  445 (591)
T PTZ00207        367 GAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLT  445 (591)
T ss_pred             CchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHH
Confidence            87777777777777776344 222  223567888999999999999873333322    111122233333 3333333


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCc-cchhhhhhcccc----h--
Q 008957          417 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS-SPLVGVLQDHVN----N--  489 (547)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~-~~~~g~l~~~~~----~--  489 (547)
                      +..........+..++.+++.+..++....++.+.+. ++-|+-.-+.....-+ |..+- -.+.|.++|.-.    .  
T Consensus       446 l~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pi-gs~~~n~~l~G~~Yd~ea~k~~~~~  523 (591)
T PTZ00207        446 LFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVL-SAIFLNRLLYGEWYTQQADKLGQDV  523 (591)
T ss_pred             HHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCe
Confidence            3333222466777788888888888888888888887 8888877776433333 54432 446677776421    1  


Q ss_pred             ------hHHHHHHHHHHHHHHHHHHHHH
Q 008957          490 ------WRKTTLALTSIFFLAAGIWFVG  511 (547)
Q Consensus       490 ------~~~~~~~~~~~~~~~~~~~~~~  511 (547)
                            ++.+|++++++++++.+...+.
T Consensus       524 C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        524 CTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             eCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence                  5678888888888777765543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.93  E-value=3.8e-25  Score=220.25  Aligned_cols=396  Identities=12%  Similarity=0.041  Sum_probs=234.1

Q ss_pred             ccccc--cccCccchhHHHHHHHHHHhhhhhhhhhhhhh-cCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          107 GIQGD--FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       107 ~i~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      .+.++  +|++..+.+++.+.+.+++.++++++|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|+|
T Consensus        36 yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g  115 (475)
T TIGR00924        36 YLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVG  115 (475)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhc
Confidence            34555  89999999999999999999999999999999 8999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCC---cchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCc
Q 008957          184 EASFISLAAPFIDDNAPVPQ---KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  260 (547)
                      .|...+...++++|++|+++   |+.++++++.+.++|.++||++++++.+++|||+.|++.++..++. ++.++..++.
T Consensus       116 ~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~-~l~~~~~~~~  194 (475)
T TIGR00924       116 SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG-LLTFFAGRHM  194 (475)
T ss_pred             cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHcccc
Confidence            99999999999999998764   8889999999999999999999999999899999999988655444 3333333332


Q ss_pred             cCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccch----------hhhhhhhhhhhhhHhhcccc
Q 008957          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGES----------RFLNQLSQFSQDTKVLLQEK  330 (547)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  330 (547)
                      .++.++  +++....++.........................+.......          ......++...+..+-.|..
T Consensus       195 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (475)
T TIGR00924       195 LRDIGS--VPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMY  272 (475)
T ss_pred             cccCCC--CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHH
Confidence            211111  010000000000000000000000000000000000000000          00000000000000001112


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhccceeEeeccC-----chhhHhhhhhhcccccccceeeeeeeecccccc---hhHHHH
Q 008957          331 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM-----SNADMMFGGVTIVCGIVGTISGGFILDQMGATI---SNAFKL  402 (547)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~---~~~~~~  402 (547)
                      .+..+.+...++...+....+.++.+.++..+.     +-....+..+..+.-++..++..++..|+.||.   ....++
T Consensus       273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~  352 (475)
T TIGR00924       273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF  352 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence            233334444444444444444455444332111     111223333444444444333333333444321   111122


Q ss_pred             HHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcC
Q 008957          403 LSAATFLGAISCLTAFC---------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGD  473 (547)
Q Consensus       403 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~  473 (547)
                       ..+.++..+.++....         ..+.++.+...++.+.+.....+.......+..|++.||+..|+....... |.
T Consensus       353 -~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~-g~  430 (475)
T TIGR00924       353 -TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAM-GS  430 (475)
T ss_pred             -HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HH
Confidence             3333333333333221         246777788888888888899999999999999999999999999766665 87


Q ss_pred             CCccchhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008957          474 VPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  508 (547)
Q Consensus       474 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  508 (547)
                      .+++.+.....+.. ++...+...+.+.++..++.
T Consensus       431 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       431 LLGGYLATFGAVPQ-GVTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHHHHHHHhccc-chhhHHHHHHHHHHHHHHHH
Confidence            87777777665543 35455555555544444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=1.1e-22  Score=201.23  Aligned_cols=360  Identities=20%  Similarity=0.349  Sum_probs=277.3

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc----------------
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----------------  167 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----------------  167 (547)
                      .+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|+++++++++++++-                
T Consensus       119 ~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~  198 (735)
T KOG3626|consen  119 VITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQ  198 (735)
T ss_pred             hhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhc
Confidence            3488999999999999999999999999999999999999999999999999999999998761                


Q ss_pred             ----c-----------------------------c--HH-HHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHH
Q 008957          168 ----F-----------------------------D--FW-SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF  211 (547)
Q Consensus       168 ----~-----------------------------~--~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  211 (547)
                          +                             +  ++ .++++.++.|+|....++.+.+|+-|...+++-+..+|+.
T Consensus       199 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~  278 (735)
T KOG3626|consen  199 SVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGIL  278 (735)
T ss_pred             cccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHH
Confidence                0                             0  33 5677999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhhhHHhhcCC------------------C-CchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCcccc
Q 008957          212 YMCIPTGVALGYVYGGVVGSH------------------L-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  272 (547)
Q Consensus       212 ~~~~~~G~~~g~~l~~~l~~~------------------~-gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  272 (547)
                      .....+|.++|.++++++.+.                  . .|..-|++.+.+.++.++..++++.+.++..++.+..+.
T Consensus       279 ~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~  358 (735)
T KOG3626|consen  279 YSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDL  358 (735)
T ss_pred             HHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhh
Confidence            999999999999999987531                  1 266778888888887777777765443222111000000


Q ss_pred             ccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhh
Q 008957          273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  352 (547)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (547)
                      .                    ..+.+.+    ..+......+..+++....+.+++||.+...+++..+....+.++.+|
T Consensus       359 ~--------------------~~k~~~~----~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tF  414 (735)
T KOG3626|consen  359 H--------------------VLKTESG----GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITF  414 (735)
T ss_pred             c--------------------ccccccc----cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHh
Confidence            0                    0000000    011111122456788899999999999999999999999999999999


Q ss_pred             ccceeEeeccCchhhH--hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH-----------
Q 008957          353 GPKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-----------  419 (547)
Q Consensus       353 ~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  419 (547)
                      +|.|++..++.++..+  +...+...+..+|.+++|+++.|+.-+.+...++.++..++..++.+..++           
T Consensus       415 lPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~  494 (735)
T KOG3626|consen  415 LPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGV  494 (735)
T ss_pred             hHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccce
Confidence            9999999999986444  444555567788999999999999877544444555555555555333322           


Q ss_pred             --------------------------------------------------------------------hh----------
Q 008957          420 --------------------------------------------------------------------LS----------  421 (547)
Q Consensus       420 --------------------------------------------------------------------~~----------  421 (547)
                                                                                          ..          
T Consensus       495 ~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~  574 (735)
T KOG3626|consen  495 TNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAK  574 (735)
T ss_pred             ecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceee
Confidence                                                                                00          


Q ss_pred             ----------hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhccc
Q 008957          422 ----------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  487 (547)
Q Consensus       422 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  487 (547)
                                ....+++.+++..+..+....+.+.++...+++|.|+.++|+..++.+++|.+-+|+++|++.|..
T Consensus       575 ~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  575 KGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT  650 (735)
T ss_pred             cCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence                      123455556666666777888899999999999999999999999999999999999999999854

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.92  E-value=1.3e-24  Score=213.10  Aligned_cols=365  Identities=10%  Similarity=-0.027  Sum_probs=243.3

Q ss_pred             HHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHH--HHHHHHHHhhhhhhh-hhhhhh
Q 008957           67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVL--SSAFMVGLLVASPIF-ASLAKS  143 (547)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~--~s~~~~~~~~~~~~~-g~l~dr  143 (547)
                      +..++..++..++......                 |.+|.+.+|.|.+.+++|++  .++..+...+.++++ ++..||
T Consensus         3 ~~~~~~ly~~~g~~~~~~~-----------------p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~   65 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAM-----------------DALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR   65 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHH-----------------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            4455566666655544333                 45688999999999999997  466788888888888 447999


Q ss_pred             cCCceehHHHHHHH-HHHHHhhh---cccc-HHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhh
Q 008957          144 HNPFRLIGVGLSVW-TFATAGCG---SSFD-FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG  218 (547)
Q Consensus       144 ~Grr~~l~~~~~~~-~~~~~~~~---~a~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  218 (547)
                      +||||..++.+.+. ++.....+   ...+ ...++..-++.++..+...+...++..|..++++++...+....+..+|
T Consensus        66 ~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG  145 (390)
T TIGR02718        66 LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIG  145 (390)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHH
Confidence            99999876655332 21122222   2323 3344555566667777788888888899999988899999999998999


Q ss_pred             hhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccc
Q 008957          219 VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (547)
Q Consensus       219 ~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (547)
                      .++|+...+++.++.|||..|++.+++.++..+..++..|+.++.   +++++                           
T Consensus       146 ~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~---~~~~~---------------------------  195 (390)
T TIGR02718       146 FFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVAS---PEAPL---------------------------  195 (390)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCc---cccch---------------------------
Confidence            999999999999999999999999988877666665554432100   00000                           


Q ss_pred             hhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhc-c
Q 008957          299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI-V  376 (547)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~-~  376 (547)
                                     +    ...++++++|+|.++......++..........+.+.|+++ .+.++... ....... .
T Consensus       196 ---------------~----~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~  255 (390)
T TIGR02718       196 ---------------A----RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAV  255 (390)
T ss_pred             ---------------h----hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHH
Confidence                           0    00235667888888877777777777677777788888877 46665444 3223333 4


Q ss_pred             cccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHhhcCccceeeeec
Q 008957          377 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL------SSLYGFLALFTVGELLVFATQAPVNYVCLH  450 (547)
Q Consensus       377 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (547)
                      ..+++.+++|++.||+++|     +.+..+..+.....+.....      .+.........+.++..+...+.......+
T Consensus       256 ~~~~g~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  330 (390)
T TIGR02718       256 TVLLGCGGGAWLVRRAGLW-----RTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMR  330 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788999999999988     45544433332222221111      111222222233333444555555556556


Q ss_pred             ccCC-cchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHH
Q 008957          451 SVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  505 (547)
Q Consensus       451 ~~~~-~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  505 (547)
                      ..++ +.+++..++.+...+. |..++|.+.|.+.|..| |...|.+.+++.+++.
T Consensus       331 ~~~~~~~~g~~~~~~~~~~~l-g~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       331 FAGDGDQAGTDVTAVQSTRDL-GELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HhCcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHH
Confidence            6666 8999999999888877 88999999999999876 7677777666555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.90  E-value=9.5e-23  Score=204.26  Aligned_cols=145  Identities=17%  Similarity=0.134  Sum_probs=126.2

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh-cCCceehHHHHHHHHHHHHhhhccc-cHHHHHHHHHHhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVG  183 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r~l~G~~  183 (547)
                      ..+.+++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.++++|+++|+|
T Consensus        46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig  125 (500)
T PRK09584         46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG  125 (500)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            55678999999999999888887777777899999999 5999999999999999999998875 566778899999999


Q ss_pred             hhhhhhcccccccccCCCCC--cchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHH
Q 008957          184 EASFISLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  250 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~  250 (547)
                      .|...+...+++.|++|+++  |..++++++.+.++|..+||.+++++.+++|||+.|++.++..++..
T Consensus       126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            99999999999999998653  45688999999999999999999999999999999999876544443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.89  E-value=1.1e-24  Score=216.47  Aligned_cols=366  Identities=21%  Similarity=0.364  Sum_probs=3.0

Q ss_pred             cccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc----------------
Q 008957          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----------------  167 (547)
Q Consensus       104 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----------------  167 (547)
                      .+++|+++|++++++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.++|++++++-                
T Consensus        25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~  104 (539)
T PF03137_consen   25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSN  104 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccc
Confidence            3489999999999999999999999999999999999999888889999999999999987641                


Q ss_pred             ----------------------------------ccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHH
Q 008957          168 ----------------------------------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM  213 (547)
Q Consensus       168 ----------------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  213 (547)
                                                        .-+..++++.++.|+|.+..++.+.+|+-|..++++-+..+|++.+
T Consensus       105 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~  184 (539)
T PF03137_consen  105 GNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYA  184 (539)
T ss_dssp             -----------------------------------------------SSS------------------------------
T ss_pred             cccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhH
Confidence                                              0135678899999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhHHhhcCC---------------------CC-chhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccc
Q 008957          214 CIPTGVALGYVYGGVVGSH---------------------LN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  271 (547)
Q Consensus       214 ~~~~G~~~g~~l~~~l~~~---------------------~g-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  271 (547)
                      ...+|.++|.++++.+.+.                     .| |=.-|++.+++.++.++..++++++.+...+..++++
T Consensus       185 ~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~  264 (539)
T PF03137_consen  185 MSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKE  264 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhh
Confidence            9999999999999876531                     12 5555666777666666666665433222211111110


Q ss_pred             cccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhh
Q 008957          272 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  351 (547)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (547)
                      ....++                  ++...++..+.+..+......++++...+.+++||.+....++.........++.+
T Consensus       265 ~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~t  326 (539)
T PF03137_consen  265 SSERKE------------------EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFAT  326 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhcch------------------hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            000000                  00000000000111122355678888999999999999999999999999999999


Q ss_pred             hccceeEeeccCchhhH--hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh---------
Q 008957          352 WGPKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---------  420 (547)
Q Consensus       352 ~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  420 (547)
                      ++|.|++.+++.++..+  ....+...+.++|.+++|++.+|++-+.....++.+...++..+.....++.         
T Consensus       327 F~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aG  406 (539)
T PF03137_consen  327 FLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAG  406 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceee
Confidence            99999999999886443  3334455678899999999999997664333333333333333331111110         


Q ss_pred             ------------------------------------------hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchh
Q 008957          421 ------------------------------------------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRA  458 (547)
Q Consensus       421 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  458 (547)
                                                                .....++++.++..+..+....+...+....+++++|+
T Consensus       407 v~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs  486 (539)
T PF03137_consen  407 VTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRS  486 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcc
Confidence                                                      01123344445555556677778888888999999999


Q ss_pred             HHHHHHHHHHHhhcCCCccchhhhhhccc
Q 008957          459 LSMAISTVSIHIFGDVPSSPLVGVLQDHV  487 (547)
Q Consensus       459 ~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  487 (547)
                      .|.|+...+.+++|.+-||+++|.+.|..
T Consensus       487 ~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  487 FALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -----------------------------
T ss_pred             hhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            99999999999999999999999999964

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.89  E-value=1.6e-22  Score=200.86  Aligned_cols=396  Identities=13%  Similarity=0.017  Sum_probs=247.0

Q ss_pred             hHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc
Q 008957           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH  144 (547)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~  144 (547)
                      ..+.++...++..++. .....                +..+.+.+++|++.++++...+...+...+-.+ +|+++||+
T Consensus        26 ~~~~~~~~~y~~qGl~-~l~~~----------------~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~   87 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIA-GLMRL----------------PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF   87 (468)
T ss_pred             hHHHHHHHHHHHhhHH-HHhhh----------------hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence            4555666667776665 33322                123778889999999999999999999999666 99999999


Q ss_pred             C-----CceehHHHHHHH-HHHHHhhhccccHHHHH-HHHHHhhhhhhhhhhcccccccccCCCCCcchhhh---HHHHh
Q 008957          145 N-----PFRLIGVGLSVW-TFATAGCGSSFDFWSIA-ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS---MFYMC  214 (547)
Q Consensus       145 G-----rr~~l~~~~~~~-~~~~~~~~~a~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~---~~~~~  214 (547)
                      +     ||+.++++.++. .++....+..++...+. +.+++.+++.+...+++-++..|..+ +++....+   +....
T Consensus        88 ~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~  166 (468)
T TIGR00788        88 PLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGA  166 (468)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHH
Confidence            8     777888887776 34444445545644444 48899999999999999999999998 54544333   33344


Q ss_pred             hhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccc
Q 008957          215 IPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  294 (547)
Q Consensus       215 ~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (547)
                      .++|.++|+.++|.+.+.++||..|++.+++.++..+ ..++.||.+.... ++..+..    .            ....
T Consensus       167 ~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~~~~~~-~~~~~~~----~------------~~~~  228 (468)
T TIGR00788       167 SATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF-VSNLSKERRAFVR-PRIGTYL----E------------MNMA  228 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH-HHHhccccccccc-ccccccc----h------------hhhh
Confidence            4589999999999999999999999999888777633 3444455321000 0000000    0            0000


Q ss_pred             cccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHH-HHHHHHHHhhhccceeEeeccCchhhH-hhhh
Q 008957          295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA-YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGG  372 (547)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~  372 (547)
                               ..   ........++.....+..+++|.++...+..++ +......... .-.+..+..+.++... ....
T Consensus       229 ---------~~---~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~-~f~~~~~~lG~s~~~~G~~~~  295 (468)
T TIGR00788       229 ---------LL---TLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGS-VFCATTQCLPGGPSFSGMSKV  295 (468)
T ss_pred             ---------hh---hhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCce-eEEEEcccCCCCcchhhhHHH
Confidence                     00   000000111222344555777887775555554 2222111111 1112333455565443 3334


Q ss_pred             hhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHhhcCc
Q 008957          373 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC----------LSSLYGFLALFTVGELLVFATQA  442 (547)
Q Consensus       373 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  442 (547)
                      ..+++.+++..+.+++.+|++.|     +.+..+.++.....+....          .++.+.......+.+++.+..+.
T Consensus       296 ~~~v~~i~g~~~~~~~~~~~~~r-----~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~  370 (468)
T TIGR00788       296 VGNLGSLCGVGGYDRFLKTFPYR-----LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFM  370 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHH-----HHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHc
Confidence            55577777777777777777766     5666555555554432210          02222334445566667777778


Q ss_pred             cceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccc----hhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008957          443 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN----NWRKTTLALTSIFFLAAGIWFVGIFLKS  516 (547)
Q Consensus       443 ~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (547)
                      +...++++..|++.+|+..++.+.+.++ |..+++.++|.+.+..|    +++..+....++.+...+.......+|+
T Consensus       371 ~~~~~~~~~~p~~~egt~~al~~s~~~l-g~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       371 PFLVLLARLCPSGCESSVFALLASILHL-GSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             cHHHHHHHhCCCCceehHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8888999999999999999999888877 88999999999988765    2444444444444433333333335565

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.6e-23  Score=179.64  Aligned_cols=362  Identities=12%  Similarity=0.036  Sum_probs=241.3

Q ss_pred             HHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh-c
Q 008957           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-H  144 (547)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~  144 (547)
                      .++.+|+..+-.++..-+.+.                 ...+.+.|.+++.++..++.+.|..-..+-++++|++.|| +
T Consensus        45 ~lv~mc~lgfgsyfcyd~p~a-----------------lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~f  107 (459)
T KOG4686|consen   45 ALVFMCLLGFGSYFCYDAPGA-----------------LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRF  107 (459)
T ss_pred             HHHHHHHhcccceeecCCchh-----------------hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhh
Confidence            444445555555555555443                 2367888899999999999999999999999999999996 5


Q ss_pred             CCceehHHHHHHHHHHHHhhh---ccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhh
Q 008957          145 NPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (547)
Q Consensus       145 Grr~~l~~~~~~~~~~~~~~~---~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (547)
                      |-|..-++-+++..+|.++++   ..+.+|.+.++||+.|+|.-...++-..+..-|+..||.+.++|+.....-+|+.+
T Consensus       108 gir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv  187 (459)
T KOG4686|consen  108 GIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV  187 (459)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence            888776666666777777665   46889999999999999999888899999999999999999999999999999988


Q ss_pred             hhhhHHhhcCCCCc------h---hHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccc
Q 008957          222 GYVYGGVVGSHLNW------R---YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS  292 (547)
Q Consensus       222 g~~l~~~l~~~~gw------r---~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (547)
                      -..+.+++.+..+=      +   ...+..+.......+.+....-    . .+++.++.. .++.              
T Consensus       188 Nf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg----~-~D~rAeril-h~e~--------------  247 (459)
T KOG4686|consen  188 NFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG----L-SDDRAERIL-HLEE--------------  247 (459)
T ss_pred             eeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh----h-hhhHHHHHH-hhhc--------------
Confidence            87777777653220      0   1111122222222222221110    0 000100000 0000              


Q ss_pred             cccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhh
Q 008957          293 EDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFG  371 (547)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~  371 (547)
                           ....+..+              ..+.+.  -.|.+|.+.+.++++......+....|.++++.++.++.+. .+.
T Consensus       248 -----g~~Ge~pk--------------Ltdv~~--f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~  306 (459)
T KOG4686|consen  248 -----GFLGEEPK--------------LTDVNT--FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNIL  306 (459)
T ss_pred             -----CcccCCcc--------------cccccc--cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchh
Confidence                 00000000              011111  24788999999999999999999999999999999997554 444


Q ss_pred             hhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeec
Q 008957          372 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLH  450 (547)
Q Consensus       372 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (547)
                      +.....+.+..++.|.++||.|++.    +++..+.+..... ..+.+..-+++....++.+.+-...+   .....+..
T Consensus       307 s~vy~Isav~spvfg~i~Dk~G~n~----~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAc---slWP~va~  379 (459)
T KOG4686|consen  307 STVYGISAVLSPVFGAISDKYGFNL----WWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLAC---SLWPCVAS  379 (459)
T ss_pred             hhhhhhhhhhhhhHHHhHhhhccee----hhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHH---HHhhhhhh
Confidence            5556677777889999999999984    2222222222222 22333333444444444443333332   23444555


Q ss_pred             ccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHH
Q 008957          451 SVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  493 (547)
Q Consensus       451 ~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  493 (547)
                      .+|.+.-|++.|....+.++ |.++.|++.|.+.|..|+|.+.
T Consensus       380 ~vpE~qLGTaygf~qsIqNL-gla~i~Iiag~i~d~~g~y~~l  421 (459)
T KOG4686|consen  380 LVPEEQLGTAYGFIQSIQNL-GLAFIPIIAGFIADGDGSYDNL  421 (459)
T ss_pred             hCCHHHhcchHHHHHHHHhh-hhhHHhhhhheeecCCCchhhH
Confidence            67888999999999999999 9999999999999988876554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.88  E-value=1.5e-21  Score=191.43  Aligned_cols=350  Identities=15%  Similarity=0.128  Sum_probs=268.3

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHH-HHHHHHHHHHhhhcc-cc-HHHHHHHHHHhhhhhhhhhhcccc
Q 008957          117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV-GLSVWTFATAGCGSS-FD-FWSIAICRMLVGVGEASFISLAAP  193 (547)
Q Consensus       117 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~a-~~-~~~l~~~r~l~G~~~~~~~~~~~~  193 (547)
                      +..++..++..+..++..++.|.++|+-|+||.++. ..++..+++++..+. ++ ++...+.-++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788999999999999999999999987765544 445555566666653 33 444444555555777788888999


Q ss_pred             cccccCCCCCc--------------------------chhhhHHHHhhhhhhhhhhhhHHhhcC--------CCCchhHH
Q 008957          194 FIDDNAPVPQK--------------------------TAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAF  239 (547)
Q Consensus       194 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~l~~~l~~--------~~gwr~~f  239 (547)
                      ++.|..+++++                          ++..+.-.....+|.++..++.-.+..        ...-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999888                          899998888888888887776654431        22358999


Q ss_pred             HHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhh
Q 008957          240 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQF  319 (547)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (547)
                      .+.++.-++..+..++..|+.++....++...                                       ......++.
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~g~~~l  270 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSS---------------------------------------YLRFGFKRL  270 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchh---------------------------------------HHHHHHHHH
Confidence            99999999999988888877544211111111                                       111455666


Q ss_pred             hhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchh
Q 008957          320 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISN  398 (547)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  398 (547)
                      ++.+|++.+.|.....+++.+++.-+...+......|..+..+++.... .+..+..+.+++|.++.|++.||+|.|.. 
T Consensus       271 ~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~-  349 (477)
T PF11700_consen  271 WRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK-  349 (477)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-
Confidence            7778888889999999999999999999999999999998999987665 44566679999999999999999999832 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHh
Q 008957          399 AFKLLSAATFLGAISCLTAFC--------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  470 (547)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~  470 (547)
                        +.+....++..+.++....        ..+.+.+.++..+.|.+.+..++..-+++.+..|+++.+.-.|++......
T Consensus       350 --~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~  427 (477)
T PF11700_consen  350 --RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA  427 (477)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence              2333333333333333333        456777888888899999999999999999999999999999999877777


Q ss_pred             hcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          471 FGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       471 ~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                       .+++||.+.|.+.+.+|+.+.++....++.+++.+++.
T Consensus       428 -ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  428 -SSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             -HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence             78899999999999999899999888888777777665

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09669 putative symporter YagG; Provisional

Probab=99.88  E-value=5.4e-22  Score=197.57  Aligned_cols=329  Identities=13%  Similarity=0.055  Sum_probs=218.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh----cCCc-eehHHHHHHHHHHHHhhhcccc------HHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPF-RLIGVGLSVWTFATAGCGSSFD------FWSIA  174 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~a~~------~~~l~  174 (547)
                      ..+.+++|++..++|.+.++..+..++..++.|+++||    +||| +.++.+.+..+++.++....++      ++.++
T Consensus        34 ~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~  113 (444)
T PRK09669         34 YFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC  113 (444)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            55778899999999999999999999999999999998    7774 5566777777777765544433      45566


Q ss_pred             HHHHHhhhhhhhhhhcccccccccC-CCCCcchhhhHHHHhhhhhhhhhhhhHHhhc----C---CCCchhHHHHHHHHH
Q 008957          175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG----S---HLNWRYAFWGEAILM  246 (547)
Q Consensus       175 ~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~----~---~~gwr~~f~~~~~~~  246 (547)
                      +.-++.+.+.........++.+|+. ++++|++..++...+..+|..+++.+...+.    +   ..+|+..+.+.++++
T Consensus       114 ~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~  193 (444)
T PRK09669        114 VTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG  193 (444)
T ss_pred             HHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            6666777766667777788999998 4578998888888888888777765443322    1   357998998888887


Q ss_pred             HHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhh
Q 008957          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (547)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (547)
                      ++..++.++..+|....    ++++                                            ..+..++++.+
T Consensus       194 ~v~~~~~~~~~~e~~~~----~~~~--------------------------------------------~~~~~~~~~~~  225 (444)
T PRK09669        194 VVLFFCCFFMTKERYTP----EVDN--------------------------------------------SSSVWKDLKLL  225 (444)
T ss_pred             HHHHHHHhCCeEEecCC----CCcC--------------------------------------------CCCHHHHHHHH
Confidence            77766665554442110    0000                                            00112556788


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHH
Q 008957          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (547)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  406 (547)
                      +++|.++...+..++............+.|.+...+.......+.....+..+++.++.+++.||+|+|     +....+
T Consensus       226 ~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-----~~~~~~  300 (444)
T PRK09669        226 LGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRV-----RAFKWT  300 (444)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHH
Confidence            899998888777666655554444444445554443332222333344566778888889999999988     444444


Q ss_pred             HHHHHHHHH-HHHH-hhhHHHHHHHHHHHHHHHhhcCccceeeeecccC-------CcchhHHHHHHHHHHHhhcCCCcc
Q 008957          407 TFLGAISCL-TAFC-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVPSS  477 (547)
Q Consensus       407 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~g~~~~~~~~~g~~~~~  477 (547)
                      .....+..+ +... .++.+...+..++.+++.+...+.....+.+..+       .+..|...|..+....+ |..+|+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~kl-g~alg~  379 (444)
T PRK09669        301 IVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKL-GLAIGG  379 (444)
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHH-HHHHHH
Confidence            433332222 2222 2345555556666777777666666666666554       23456677777666676 888899


Q ss_pred             chhhhhhcccc
Q 008957          478 PLVGVLQDHVN  488 (547)
Q Consensus       478 ~~~g~l~~~~~  488 (547)
                      .+.|.+.+..|
T Consensus       380 ~i~g~ll~~~G  390 (444)
T PRK09669        380 AVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHcC
Confidence            99999887654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.87  E-value=4.6e-21  Score=191.97  Aligned_cols=334  Identities=8%  Similarity=-0.029  Sum_probs=218.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh----hcCC-ceehHHHHHHHHHHHHhhhcccc------HHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNP-FRLIGVGLSVWTFATAGCGSSFD------FWSIA  174 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~a~~------~~~l~  174 (547)
                      ..+.+.+|++..++|.+..+..+.-++..++.|+++|    |+|| |+.++++.+..+++.++....++      +..++
T Consensus        31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~  110 (473)
T PRK10429         31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC  110 (473)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            4456678999999999999999999999999999999    6698 56777788888877665544331      33455


Q ss_pred             HHHHHhhhhhhhhhhcccccccccC-CCCCcchhhhHHHHhhhhhhhhhhhhHHhh----c---CCCCchhHHHHHHHHH
Q 008957          175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVV----G---SHLNWRYAFWGEAILM  246 (547)
Q Consensus       175 ~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l----~---~~~gwr~~f~~~~~~~  246 (547)
                      +.-++.+++.....+...+++.|.. +++||.+..++-..+.++|..+++.+...+    .   +..+|+....+.+++.
T Consensus       111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~  190 (473)
T PRK10429        111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF  190 (473)
T ss_pred             HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            6666778888888888889999998 588999999887777777755555444322    1   1236787777777776


Q ss_pred             HHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhh
Q 008957          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (547)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (547)
                      ++..+..++..+|....   ++.+...                                        +...+..+.++.+
T Consensus       191 ~~~~~~~~~~~~e~~~~---~~~~~~~----------------------------------------~~~~~~~~~~~~~  227 (473)
T PRK10429        191 IVSTIITLRNVHEVYSS---DNQVSAE----------------------------------------GSHLTLKDIVALI  227 (473)
T ss_pred             HHHHHHHHcCceecCCc---ccccccc----------------------------------------ccCCCHHHHHHHH
Confidence            66666665544542111   0000000                                        0000122445667


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHH
Q 008957          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (547)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  406 (547)
                      ++||.++..++..++..........+.+.|.+...+.......+..+..++.+++.++.+++.||+|+|     +.+..+
T Consensus       228 ~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----~~~~~~  302 (473)
T PRK10429        228 YKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR-----ILWAGA  302 (473)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHHHH
Confidence            789988888887777777777777777767766555433222333444577788888899999999998     555444


Q ss_pred             HHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHhhcCccceeeeecccC-------CcchhHHHHHHHHHHHhhcCC
Q 008957          407 TFLGAISCLTAFC-----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDV  474 (547)
Q Consensus       407 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~g~~~~~~~~~g~~  474 (547)
                      ..+.++..+....     ..+.+..++...+.+++.+..+.....++.+.++       .+..|...|.......+ |..
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~-~~a  381 (473)
T PRK10429        303 SIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG-GSA  381 (473)
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH-HHH
Confidence            4433332222211     2334444444455555566555555556666544       23456677887666666 888


Q ss_pred             Cccchhhhhhcccc
Q 008957          475 PSSPLVGVLQDHVN  488 (547)
Q Consensus       475 ~~~~~~g~l~~~~~  488 (547)
                      +++.+.|++.+..|
T Consensus       382 l~~~i~g~~l~~~G  395 (473)
T PRK10429        382 FAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHcC
Confidence            89999999877544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.86  E-value=4.5e-21  Score=184.72  Aligned_cols=330  Identities=18%  Similarity=0.125  Sum_probs=236.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcC-CceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      +..-++.|.|..|+|.+.+...+...++++++|.++||++ +|+++.+..++.++...+....++++.+++.-++..+..
T Consensus        26 ~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~  105 (400)
T PF03825_consen   26 PLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFF  105 (400)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            5667778999999999999999999999999999999986 677888888888887777788899999988888888888


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhh-HHhhcCCCC---chhHHHHHHHHHHHHHHHHHhhccCc
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY-GGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPLQ  260 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l-~~~l~~~~g---wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (547)
                      ....|...++..+...  +++.-.|-.-...++|.+++... ++.+.+..+   ..+.+++.++.+++..... +.+|+.
T Consensus       106 ~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~  182 (400)
T PF03825_consen  106 SPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFA-LFLPKT  182 (400)
T ss_pred             ccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH-HhCCCC
Confidence            8888888888888775  34555666777777777776543 233333332   3355666665554444333 334554


Q ss_pred             cCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHH
Q 008957          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (547)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (547)
                      ++.+..+++.+.                                             ....+...++|+|.+....+..+
T Consensus       183 ~~~~~~~~~~~~---------------------------------------------~~~~~~~~llk~~~~~~Fll~~~  217 (400)
T PF03825_consen  183 PPKRSAKESVKK---------------------------------------------LLGLDALKLLKNPRFLVFLLAAF  217 (400)
T ss_pred             ccccccCCCccc---------------------------------------------ccchHHHHHhcCccHHHHHHHHH
Confidence            321111111000                                             00123346889999998888888


Q ss_pred             HHHHHHHHHhhhccceeEeeccCchhh-HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHH
Q 008957          341 AYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (547)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (547)
                      +..........+.+.|+++.++.+... .....+..++.++.-...+++..|+|.+     +++..+.+..++=..+...
T Consensus       218 l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~-----~ll~~a~~~~~vR~~l~a~  292 (400)
T PF03825_consen  218 LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK-----WLLLLALVAYAVRWLLYAY  292 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHH
Confidence            888888888889999999887644322 2333455677888888889999999888     6777777666665555554


Q ss_pred             h-hhHHHHHHHHH----HHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccc
Q 008957          420 L-SSLYGFLALFT----VGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  488 (547)
Q Consensus       420 ~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  488 (547)
                      . ++.+...+...    +-+...+..+.....++.+..|++.|+++.++++.....+|..+|..++|++.|+.|
T Consensus       293 ~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  293 FSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             hcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            4 44443333333    356666667777778888889999999999999887776799999999999999876

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.86  E-value=1.1e-20  Score=183.91  Aligned_cols=366  Identities=12%  Similarity=0.021  Sum_probs=238.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh----hcCCceehHHH-HHHHHHHHHhhhccccHH---------
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFRLIGVG-LSVWTFATAGCGSSFDFW---------  171 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~a~~~~---------  171 (547)
                      +.+.+++|.+..+.+++..+..+...+.+++.|+++|    |+||||.++++ .+...++.++.+++++++         
T Consensus        28 ~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~  107 (477)
T TIGR01301        28 TPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDK  107 (477)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccc
Confidence            4567889999999999999999999999999999999    59999988775 666667767777776643         


Q ss_pred             --------HHHHHHHHhhhhhhhhhhcccccccccCCCCCc--chhhhHHHHhhhhhhhhhhhhHHhh--cCC-------
Q 008957          172 --------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVV--GSH-------  232 (547)
Q Consensus       172 --------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~l~~~l--~~~-------  232 (547)
                              .++++-.+..++.....+...++++|.+|+++|  +.+.++.+.+.++|.++|+.++++.  .+.       
T Consensus       108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~  187 (477)
T TIGR01301       108 KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTE  187 (477)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccc
Confidence                    223333344457777888899999999998865  6899999999999999999999875  211       


Q ss_pred             ------CCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhccc
Q 008957          233 ------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS  306 (547)
Q Consensus       233 ------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (547)
                            .+.|+.|++.++..++..++..+..+|.+....  ++....   +.              ++.++     ..  
T Consensus       188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~--~~~~~~---~~--------------~~~~~-----~~--  241 (477)
T TIGR01301       188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS--DDFINS---EA--------------APPSK-----HG--  241 (477)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc--ccchhh---hc--------------ccccc-----cc--
Confidence                  156899999998888888888877777543211  000000   00              00000     00  


Q ss_pred             ccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeE-eeccCch-------hh----Hhhhhhh
Q 008957          307 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY-NIYHMSN-------AD----MMFGGVT  374 (547)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~-------~~----~~~~~~~  374 (547)
                           .....++.+++++.  ..+.++.+++..++..++...+..|.+.+.. +.++.++       ..    .....+.
T Consensus       242 -----~~~~~~~i~~~~~~--mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~  314 (477)
T TIGR01301       242 -----EEAFFGELFGAFKY--LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLN  314 (477)
T ss_pred             -----hhhhHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHH
Confidence                 00112233344433  2467888888888888888888887777654 3443221       11    1112233


Q ss_pred             cccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhh---------------------HHHHHHHHHHH
Q 008957          375 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS---------------------LYGFLALFTVG  433 (547)
Q Consensus       375 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~  433 (547)
                      .+...+..++..++.+|+|+|+    .....+.++.+.+++...+..+                     .+..++.+.+.
T Consensus       315 s~~~~i~s~~l~~l~~~~g~~k----~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  390 (477)
T TIGR01301       315 SVVLGITSIGMEKLCRGWGAGK----RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAIL  390 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHh
Confidence            3444455556666777777531    3334443444443333332221                     25566677777


Q ss_pred             HHHHhhcCccceeeeecccCC--cchhHHHHHHHHHHHhhcCCCccchhhhhhcccch-hHHHHHHHHHHHHHHHHHHH
Q 008957          434 ELLVFATQAPVNYVCLHSVKP--SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-WRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~--~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~  509 (547)
                      |+.....+..-++++.+..++  +..|..+|+.|.+..+ ..++.....|.+.+..|+ ....+.+.++.++++.++..
T Consensus       391 Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~l-pQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       391 GIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVI-PQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             hHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            777777777777788888875  4569999999988877 777777777776665553 33455555555555555444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.85  E-value=1.2e-20  Score=174.02  Aligned_cols=362  Identities=14%  Similarity=0.111  Sum_probs=248.7

Q ss_pred             CchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhh
Q 008957           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (547)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~  141 (547)
                      ++|.+++++++..+.+.+.....+.                 .-.....-|+ +....-|+.-+|++.+....+++-|+.
T Consensus        42 rRW~vLl~~slL~~SN~~qWI~ya~-----------------i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~l  103 (480)
T KOG2563|consen   42 RRWVVLLAFSLLNFSNGMQWIQYAP-----------------INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWIL  103 (480)
T ss_pred             hHhHHHHHHHHHHhcCcchheeehh-----------------HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence            3445666666666666555544432                 2244555667 777788999999999999999999999


Q ss_pred             hhcCCceehHHHHHHHHHHHHhhhccc------cHH--HHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHH
Q 008957          142 KSHNPFRLIGVGLSVWTFATAGCGSSF------DFW--SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM  213 (547)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~a~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  213 (547)
                      |++|-|..++++..+.++|+.+-..+.      .++  ....+..+.+..+-.....-..+-.-|+++++|..+..+-.+
T Consensus       104 dk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~  183 (480)
T KOG2563|consen  104 DKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVM  183 (480)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHh
Confidence            999999999999999999998876553      344  666888898888887777777888899999999999999999


Q ss_pred             hhhhhhhhhhhhHHhhcCCC------Cchh--HHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCC
Q 008957          214 CIPTGVALGYVYGGVVGSHL------NWRY--AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  285 (547)
Q Consensus       214 ~~~~G~~~g~~l~~~l~~~~------gwr~--~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (547)
                      ++.+|.++|.++...+..+-      .|--  .|+..+.++.+..++..+..++.++.  ++......            
T Consensus       184 ~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t--Pps~s~~~------------  249 (480)
T KOG2563|consen  184 GNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT--PPSASQAA------------  249 (480)
T ss_pred             cchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCchhHhh------------
Confidence            99999999999998887543      3544  35545555544444444444432222  11111100            


Q ss_pred             CCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCch
Q 008957          286 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  365 (547)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  365 (547)
                                                  .+..++.++.+..++++.+...++.+......+++..+.+-..+...+-.+.
T Consensus       250 ----------------------------~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~  301 (480)
T KOG2563|consen  250 ----------------------------LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGV  301 (480)
T ss_pred             ----------------------------hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCcc
Confidence                                        0012345788899999999999998888888888887776644433332222


Q ss_pred             hhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH-HHHHHHh---hhHHHHHHHHHHHHHHHhhcC
Q 008957          366 ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CLTAFCL---SSLYGFLALFTVGELLVFATQ  441 (547)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  441 (547)
                      .+.....+..+++.++.++.|.+.||.+..+.    ............ ..+....   ...+.......+.+++.....
T Consensus       302 ~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~----~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~  377 (480)
T KOG2563|consen  302 FAGYIGALMIVAGMLGALASGIIADKTKKFKL----TTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYL  377 (480)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH----HHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCC
Confidence            33455566678889999999999999887642    222222222222 1111111   233445555666777777888


Q ss_pred             ccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccc
Q 008957          442 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  488 (547)
Q Consensus       442 ~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  488 (547)
                      |...-+..|...|..-++..|+.+...++++..+ .++.+...+..+
T Consensus       378 Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~-~~~~~~~~~~~~  423 (480)
T KOG2563|consen  378 PIGFELGVETTYPVAEGTSSGLLNLSGQIFGVIL-VFIMGILAEDLG  423 (480)
T ss_pred             CcceeeeeeeccccCCcccceeEEeehhHHHHHH-HHHHHHHhhccC
Confidence            8888888899889888888898888888866543 556666665544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.84  E-value=1.1e-19  Score=177.72  Aligned_cols=150  Identities=14%  Similarity=0.118  Sum_probs=123.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc-CCceehHHHHHHHHHHHHhhhccc-cHHHHHHHHHHhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVG  183 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r~l~G~~  183 (547)
                      ..+.+++|++..+.+.+.+.+.....++.+++|+++||+ ||||+++++.++..++.++.+..+ +...++++..+.++|
T Consensus        34 ~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG  113 (493)
T PRK15462         34 LYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCG  113 (493)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence            345677999999999999999999999999999999999 999999999999999988776543 223344455555566


Q ss_pred             hhhhhhcccccccccCCCC--CcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          184 EASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      .|...+...++++|.+|++  +|..++++.+.+.++|..++|.+.+++.+.+|||+.|.+.++. .+..++.++.
T Consensus       114 ~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig-m~l~li~~~~  187 (493)
T PRK15462        114 YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG-MIAGLVIFLC  187 (493)
T ss_pred             cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH-HHHHHHHHHH
Confidence            7777777889999999975  6999999999999999999999999999989999999987664 3444444443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.84  E-value=1.2e-20  Score=177.00  Aligned_cols=277  Identities=12%  Similarity=0.083  Sum_probs=198.4

Q ss_pred             hccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC------------
Q 008957          165 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------------  232 (547)
Q Consensus       165 ~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~------------  232 (547)
                      +...+|+.++++-++.|.|.+...+..+.++++..+++++.+.+++.+.++++|..++|++++.+...            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            34578999999999999999999999999999999999999999999999999999999999977631            


Q ss_pred             ----CCchhHHHHHHHHHHHHHHHHHhhc-cCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccc
Q 008957          233 ----LNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI  307 (547)
Q Consensus       233 ----~gwr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (547)
                          .+||++|++.+.+.++..+++.+.. ||...     ++.+...                  +  +       +.  
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~~------------------~--~-------~~--  130 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARVS------------------S--G-------DT--  130 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----ccccccc------------------c--c-------cc--
Confidence                3699999988777666655544432 33110     0000000                  0  0       00  


Q ss_pred             cchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEee--ccCchhhH-hhhhhhccccccccee
Q 008957          308 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTIS  384 (547)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~  384 (547)
                                   ...+..+++|.++...+..+++.....++..|.+.|+.+.  ++.++... ........+.++|+++
T Consensus       131 -------------~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~  197 (310)
T TIGR01272       131 -------------TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFI  197 (310)
T ss_pred             -------------cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                         0012345678888888888888888999999999999754  46665443 4556778899999999


Q ss_pred             eeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHH
Q 008957          385 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  464 (547)
Q Consensus       385 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~  464 (547)
                      ++++.||++++     +.+..+..++.+..++....++.. ....+.+.+++.+..+|.......+..++ ..+++.++.
T Consensus       198 ~~~l~~r~g~~-----~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~  270 (310)
T TIGR01272       198 GSAVMPMISQG-----RYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL  270 (310)
T ss_pred             HHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH
Confidence            99999999987     455554444444443333333322 33455567788888888888888777655 355666664


Q ss_pred             HHHHHhhcCCCccchhhhhhcccchhHHHHHHHH
Q 008957          465 TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALT  498 (547)
Q Consensus       465 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~  498 (547)
                       ..... |+++.|.+.|.+.|..| .+.++++..
T Consensus       271 -~~~~~-Gg~i~P~l~G~lad~~g-~~~a~~v~~  301 (310)
T TIGR01272       271 -CLAIV-GGAIVPLLQGSLADCLG-IQLAFALPV  301 (310)
T ss_pred             -HHHHh-cchHHHHHHHHHHHhcc-chHHHHHHH
Confidence             44444 88999999999999876 556665433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.84  E-value=9.9e-20  Score=181.72  Aligned_cols=328  Identities=10%  Similarity=-0.002  Sum_probs=206.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc----CCcee-hHHHHHHHHHHHHhh-hc----ccc--HHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH----NPFRL-IGVGLSVWTFATAGC-GS----SFD--FWSI  173 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~-l~~~~~~~~~~~~~~-~~----a~~--~~~l  173 (547)
                      ..+.+.+|++..++|.+.+...+..++..++.|+++||.    ||||. ++++.+...+..++. ..    +++  .+.+
T Consensus        33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (448)
T PRK09848         33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA  112 (448)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence            456777899999999999999999999999999999996    66664 455655454444332 21    222  2334


Q ss_pred             HHHHHHhhhhhhhhhhcccccccccCCC-CCcchhhhHHHHh-----hhhhhhhhhhhHHhhcCCC--CchhHHHHHHHH
Q 008957          174 AICRMLVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMC-----IPTGVALGYVYGGVVGSHL--NWRYAFWGEAIL  245 (547)
Q Consensus       174 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~g~~l~~~l~~~~--gwr~~f~~~~~~  245 (547)
                      ++.-++.+++.+...+...++..+..++ ++|.+..++-..+     ..+|..++|.+++...+..  +|.....+.+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~  192 (448)
T PRK09848        113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIA  192 (448)
T ss_pred             HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            4455677888888887777777777654 6788876665543     3345556666665432211  122122233333


Q ss_pred             HHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHh
Q 008957          246 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  325 (547)
Q Consensus       246 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (547)
                      +++..++.+...||....    ++++                                             .+..+.++.
T Consensus       193 ~~~~~~~~~~~~~e~~~~----~~~~---------------------------------------------~~~~~~~~~  223 (448)
T PRK09848        193 GMVLYFICFKSTRENVVR----IVAQ---------------------------------------------PSLKISLQT  223 (448)
T ss_pred             HHHHHHHHHcCcEeccCC----CccC---------------------------------------------CCHHHHHHH
Confidence            333333333333332110    0000                                             011245678


Q ss_pred             hcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhh-cccccccceeeeeeeecccccchhHHHHHH
Q 008957          326 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVT-IVCGIVGTISGGFILDQMGATISNAFKLLS  404 (547)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  404 (547)
                      ++++|.++...+..++..........+.|.|.++..+.+.....+.... .++.+++.++.+++.||+++|     +.+.
T Consensus       224 l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----~~~~  298 (448)
T PRK09848        224 LKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----NTFL  298 (448)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHH
Confidence            8999999998888888888878888888889988887765433332222 455677888899999999988     5655


Q ss_pred             HHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhcCccceeeeecccCC-------cchhHHHHHHHHHHHhhcCCC
Q 008957          405 AATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVP  475 (547)
Q Consensus       405 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~g~~~~~~~~~g~~~  475 (547)
                      .+..+..+.++.....  .+.+...+...+.+++.+...+.......+..+.       +.+|...|+.+....+ |..+
T Consensus       299 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl-g~ai  377 (448)
T PRK09848        299 IGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC-GQAI  377 (448)
T ss_pred             HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH-HHHH
Confidence            5555544444333332  2344444445556666666666666666665554       2458888998776666 8888


Q ss_pred             ccchhhhhhcccc
Q 008957          476 SSPLVGVLQDHVN  488 (547)
Q Consensus       476 ~~~~~g~l~~~~~  488 (547)
                      ++.+.|.+.+..|
T Consensus       378 g~~i~g~~l~~~G  390 (448)
T PRK09848        378 GGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHcC
Confidence            9888888866543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.84  E-value=3.6e-20  Score=183.62  Aligned_cols=331  Identities=15%  Similarity=0.127  Sum_probs=249.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh----hcCCce-ehHHHHHHHHHHHHhhhcc-c-------cHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFR-LIGVGLSVWTFATAGCGSS-F-------DFWS  172 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~-~l~~~~~~~~~~~~~~~~a-~-------~~~~  172 (547)
                      +...+.+|+++...|.+..+..+-.++..++.|.++|    |+|||| .+++|.+..+++.++.... +       ....
T Consensus        26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~  105 (428)
T PF13347_consen   26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW  105 (428)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence            5567778999999999999999999999999999999    899665 5667888888888877765 4       2334


Q ss_pred             HHHHHHHhhhhhhhhhhcccccccccCC-CCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC-------CCchhHHHHHHH
Q 008957          173 IAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAI  244 (547)
Q Consensus       173 l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------~gwr~~f~~~~~  244 (547)
                      +++.-++..++.........++..|..+ +++|.+..+.-..+..+|.++...+.+.+.+.       .+|++..++.++
T Consensus       106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i  185 (428)
T PF13347_consen  106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI  185 (428)
T ss_pred             HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence            5667777788999888889999999998 57899999999999999887666666554421       169999999999


Q ss_pred             HHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhH
Q 008957          245 LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTK  324 (547)
Q Consensus       245 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (547)
                      +.++..++.++..+|......  ++                                            ++..+..+.++
T Consensus       186 v~~v~~~i~~~~~ke~~~~~~--~~--------------------------------------------~~~~~~~~~~~  219 (428)
T PF13347_consen  186 VGLVFFLITFFFVKERSVEVT--EQ--------------------------------------------EKKISLRDSLR  219 (428)
T ss_pred             HHHHHhhhhhheeeecccccc--cc--------------------------------------------ccccccccchh
Confidence            998888888877766111100  00                                            00112225577


Q ss_pred             hhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHH
Q 008957          325 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  404 (547)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  404 (547)
                      .++++|.++...+..++............+.|.+...+.+.....+..+..++++++.++.++++||+|+|     +...
T Consensus       220 ~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----~~~~  294 (428)
T PF13347_consen  220 SLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKK-----KVYI  294 (428)
T ss_pred             hhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccce-----eehh
Confidence            88899999988888888877777777777777777666664334445566788888999999999999999     5666


Q ss_pred             HHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhcCccceeeeecccCC-------cchhHHHHHHHHHHHhhcCCC
Q 008957          405 AATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVP  475 (547)
Q Consensus       405 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~g~~~~~~~~~g~~~  475 (547)
                      .+..+.+...++....  ++.+...+...+.+.+.+..+........|..+.       +..|...|+.+..... +..+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~-~~~l  373 (428)
T PF13347_consen  295 IGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI-GQGL  373 (428)
T ss_pred             hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH-HHHH
Confidence            6666666655555544  4778888888888888888888888888887763       3457888888777776 7788


Q ss_pred             ccchhhhhhcccc
Q 008957          476 SSPLVGVLQDHVN  488 (547)
Q Consensus       476 ~~~~~g~l~~~~~  488 (547)
                      ++.+.+.+.+..|
T Consensus       374 a~~i~g~~l~~~G  386 (428)
T PF13347_consen  374 AGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHHHHHHHhC
Confidence            8888888866543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.82  E-value=5.2e-20  Score=169.11  Aligned_cols=347  Identities=14%  Similarity=0.097  Sum_probs=272.7

Q ss_pred             ccchhHHHHHHHHHHhhhhhhhhhhhhhcCCce-ehHHHHHHHHHHHHhhhcccc--HHH-HHHHHHHhhhhhhhhhhcc
Q 008957          116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-LIGVGLSVWTFATAGCGSSFD--FWS-IAICRMLVGVGEASFISLA  191 (547)
Q Consensus       116 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~a~~--~~~-l~~~r~l~G~~~~~~~~~~  191 (547)
                      .+..+...++..+..++.+++.|.++|+.|+|| .+-+...+..++.++..++++  ++. .++.-.+..++.....+..
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            456788899999999999999999999999665 455555666666777777665  544 4556677788888888999


Q ss_pred             cccccccCCCCCcchhhhHHHHhhhhhhhhhhhhH--Hhh-c---------------CCCCchhHHHHHHHHHHHHHHHH
Q 008957          192 APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG--GVV-G---------------SHLNWRYAFWGEAILMLPFAVLA  253 (547)
Q Consensus       192 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~--~~l-~---------------~~~gwr~~f~~~~~~~~~~~~~~  253 (547)
                      .+++.+..++++-++..++-.....+|.++.-++.  ..+ .               +...-|..+.+.++..++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            99999999999888888877777777776655442  111 1               23457888999998888888888


Q ss_pred             HhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhH
Q 008957          254 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  333 (547)
Q Consensus       254 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (547)
                      ++..|+..+... +.                                        .+......++.+.+++++.+++.+.
T Consensus       217 ~~~v~~~~~~~~-~~----------------------------------------~~~l~~g~k~L~~t~k~i~~~~~i~  255 (438)
T COG2270         217 ILNVHDAEKISS-PP----------------------------------------PTALRNGFKELKSTFKEIRGRKNLV  255 (438)
T ss_pred             Hhcccccccccc-cc----------------------------------------hHHHHHHHHHHHHHHHHHhcccchH
Confidence            887766433210 00                                        0112255667778889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHH
Q 008957          334 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  412 (547)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  412 (547)
                      ...++.+++.-+.+.+..+...|....++.+.... .+.....+.+++|+++.|++.||++.|     +++..+.++...
T Consensus       256 ~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----~vl~~~lvi~~~  330 (438)
T COG2270         256 LFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK-----PVLMIGLVILSI  330 (438)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eeehHHHHHHHH
Confidence            99999999998999999999999998899987666 445666789999999999999999999     677777777777


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHH
Q 008957          413 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  492 (547)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  492 (547)
                      .++...+......+.++..+.+.+.+..++..-++..+.+|+++-++..|+++..... +.++||++.+.+.+.+|+.+.
T Consensus       331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra-~S~~gp~lv~v~t~iTg~~r~  409 (438)
T COG2270         331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRA-ASFLGPFLVAVITQITGSSRA  409 (438)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhH-HHHHHHHHHHHHHHHhcchhh
Confidence            7777777777777777778888888888888899999999999999999999877777 889999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008957          493 TTLALTSIFFLAAGIWF  509 (547)
Q Consensus       493 ~~~~~~~~~~~~~~~~~  509 (547)
                      .+....++..++.++..
T Consensus       410 g~~~i~vll~iGl~~L~  426 (438)
T COG2270         410 GVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             HHHHHHHHHHhhHhhEE
Confidence            88777777666665544

>PRK11462 putative transporter; Provisional

Probab=99.80  E-value=1.5e-18  Score=172.49  Aligned_cols=327  Identities=13%  Similarity=0.020  Sum_probs=199.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh----cCCce-ehHHHHHHHHHHHHhhhcccc------HHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIA  174 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~a~~------~~~l~  174 (547)
                      ....+.+|+++..+|.+..+.-+--++.-++.|.++||    +|||| .++++.+..+++.+++-..++      +..++
T Consensus        34 ~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~  113 (460)
T PRK11462         34 FFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAA  113 (460)
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            34556789999999999999999999999999999995    78765 556677777777776654442      34455


Q ss_pred             HHHHHhhhhhhhhhhcccccccccCC-CCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC-------CCchhHHHHHHHHH
Q 008957          175 ICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILM  246 (547)
Q Consensus       175 ~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------~gwr~~f~~~~~~~  246 (547)
                      +.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+...       .+|+....+.+++.
T Consensus       114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~  193 (460)
T PRK11462        114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVA  193 (460)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            56666788888888888899999987 68999999999999999888877665443322       36888888887777


Q ss_pred             HHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhh
Q 008957          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (547)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (547)
                      +++.++.++..+|..+.    ++++                                             .+..+.++..
T Consensus       194 ~i~~~i~~~~~kE~~~~----~~~~---------------------------------------------~~~~~~l~~~  224 (460)
T PRK11462        194 FMMLAFCFFTTKERVEA----PPTT---------------------------------------------TSMREDLRDI  224 (460)
T ss_pred             HHHHHHHHhcceeccCC----CccC---------------------------------------------CCHHHHHHHH
Confidence            66666555544442110    0000                                             0012456777


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHH
Q 008957          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (547)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  406 (547)
                      ++|+.++.+....++..............|.+...+.......+.....++.+++.++++++.||+++|     ......
T Consensus       225 ~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk-----~~~~~~  299 (460)
T PRK11462        225 WQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV-----TIFWWT  299 (460)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHH
Confidence            888888776655544444433332222223332233332222333455677788889999999999987     443322


Q ss_pred             HHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhcCccceeeeecccC-----Ccch--hHHHHHHHHHHHhhcCCCcc
Q 008957          407 TFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVK-----PSLR--ALSMAISTVSIHIFGDVPSS  477 (547)
Q Consensus       407 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~r--~~~~g~~~~~~~~~g~~~~~  477 (547)
                      ..+..+..++....  .+.....+..++.+++.+...+....+..+..+     +..|  |...+.......+ |..+++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Kl-g~alg~  378 (460)
T PRK11462        300 NALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKL-GLAFGG  378 (460)
T ss_pred             HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHH-HHHHHH
Confidence            22222212222222  222223333344444443333322333343333     2233  4444555455566 777788


Q ss_pred             chhhhhhccc
Q 008957          478 PLVGVLQDHV  487 (547)
Q Consensus       478 ~~~g~l~~~~  487 (547)
                      .+.|++.+..
T Consensus       379 ~i~g~iL~~~  388 (460)
T PRK11462        379 ALIGWMLAYG  388 (460)
T ss_pred             HHHHHHHHHc
Confidence            8888776543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.80  E-value=1.2e-19  Score=170.98  Aligned_cols=353  Identities=15%  Similarity=0.115  Sum_probs=228.1

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHH--HHH-Hhhhcc----ccHH-HHHHHHH
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT--FAT-AGCGSS----FDFW-SIAICRM  178 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~--~~~-~~~~~a----~~~~-~l~~~r~  178 (547)
                      -+.++.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++..+.+..  .+. +...+.    .|++ ..+++-+
T Consensus        33 WL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i  112 (412)
T PF01306_consen   33 WLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGI  112 (412)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTT
T ss_pred             HHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555689999999999999999999999999999999997776554432221  122 222222    2332 2233333


Q ss_pred             HhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhcc
Q 008957          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (547)
Q Consensus       179 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  258 (547)
                      ..|++.....|+.-+++.++.  ++.+.=.|-.-+..++|.+++..++|.+.+ .+-+..||+....+++..++.++..|
T Consensus       113 ~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~  189 (412)
T PF01306_consen  113 YLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKP  189 (412)
T ss_dssp             TTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred             HHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCC
Confidence            345445555566666665554  234555677788888999999999998886 34567888877766666665555544


Q ss_pred             CccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHH
Q 008957          259 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  338 (547)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (547)
                      +.++.....+..+..                                         +.+...++..+++|+|.+|.+.+.
T Consensus       190 ~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~l~k~~~fw~~~l~  228 (412)
T PF01306_consen  190 DVPPQAEVADALGAK-----------------------------------------KDKVSLKDVLSLFKMRNFWFFVLF  228 (412)
T ss_dssp             -SSSSS-SSTTSSS-----------------------------------------------HHHHHHHTTSHHHHHHHHH
T ss_pred             cCchhhhhhcccccC-----------------------------------------CCCCcHHHHHHHhcchhHHHHHHH
Confidence            422221111100000                                         000012446688999999998887


Q ss_pred             HHHHHHHHHHHhhhccceeEeeccCch----hhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHH
Q 008957          339 YIAYNFVIGAYSYWGPKAGYNIYHMSN----ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  414 (547)
Q Consensus       339 ~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  414 (547)
                      .......+..+-...|.|....+....    .-..+.++..+..++...+..++.+|+|.|     +.++++..+..+=.
T Consensus       229 v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-----~~Lllag~i~~iRi  303 (412)
T PF01306_consen  229 VIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-----NLLLLAGVIMAIRI  303 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH-----hHHHHHHHHHHHHH
Confidence            666666666665445555554333321    112344566678888888999999999999     78888777777777


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHH
Q 008957          415 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  494 (547)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  494 (547)
                      .+....++.+.....-.+-++-.........-++.+..+++..++...+...+...+|.++.+.+.|.+.|+.| ++.+|
T Consensus       304 ~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~ty  382 (412)
T PF01306_consen  304 IGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTY  382 (412)
T ss_dssp             HHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHH
Confidence            77777788888777777777777777777788888889999999998886544444487888889999999986 77788


Q ss_pred             HHHHHHHHHHHHHHH
Q 008957          495 LALTSIFFLAAGIWF  509 (547)
Q Consensus       495 ~~~~~~~~~~~~~~~  509 (547)
                      ++++.+.+...++..
T Consensus       383 limg~iv~~~~li~~  397 (412)
T PF01306_consen  383 LIMGLIVLPFTLISA  397 (412)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhe
Confidence            888877665555444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.74  E-value=2.6e-16  Score=149.93  Aligned_cols=332  Identities=10%  Similarity=0.018  Sum_probs=240.2

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh----cCCc-eehHHHHHHHHHHHHhhhcccc------HHHHHH
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPF-RLIGVGLSVWTFATAGCGSSFD------FWSIAI  175 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~a~~------~~~l~~  175 (547)
                      ...+.+|+++...|.+..+--+--++.-|+.|.+.||    +||+ +.++.+.+..++.+.++-.+++      ....++
T Consensus        38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v  117 (467)
T COG2211          38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV  117 (467)
T ss_pred             HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence            3566789999999999999999999999999999994    7755 4677788999998888877763      445566


Q ss_pred             HHHHhhhhhhhhhhcccccccccCC-CCCcchhhhHHHHhhhhhhhhhhhhHHhhc-----C--CCCchhHHHHHHHHHH
Q 008957          176 CRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVG-----S--HLNWRYAFWGEAILML  247 (547)
Q Consensus       176 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-----~--~~gwr~~f~~~~~~~~  247 (547)
                      .-++.+++.......-.++.+|+.+ ++||.+..++-+.+.++|..+...+...+.     +  ..||+..-.+.+++++
T Consensus       118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~  197 (467)
T COG2211         118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV  197 (467)
T ss_pred             HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence            7788889999888888999999986 688999999999999999776655554443     2  4589999999988888


Q ss_pred             HHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhc
Q 008957          248 PFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL  327 (547)
Q Consensus       248 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (547)
                      +..+.+++-.+|......+.++                                            ...++....+..++
T Consensus       198 i~~l~~~~~v~ER~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~  233 (467)
T COG2211         198 ILLLFCFFNVKERVVETQPTKT--------------------------------------------GVKLKLKDSFLLIF  233 (467)
T ss_pred             HHHHHHHHHhhcccCccccCcc--------------------------------------------cccccHHHHHHHHH
Confidence            8888888776653331110000                                            00111224456788


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHH
Q 008957          328 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (547)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  406 (547)
                      +|+.+...++..++..............|.+...+.+.... ........+.+++.++..++.+|+|+|     ++..++
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----~~~~~~  308 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----KLFLIG  308 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----HHHHHH
Confidence            99999998888888887777777777888877766664333 333444455666688899999999999     777777


Q ss_pred             HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhcCccceeeeecccCC-------cchhHHHHHHHHHHHhhcCCCcc
Q 008957          407 TFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVPSS  477 (547)
Q Consensus       407 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~g~~~~~~~~~g~~~~~  477 (547)
                      .++.++..++..+.+  +....++..++.+++.+...+...+.+.+.++-       +.-|...|....+... |.+++.
T Consensus       309 ~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~-g~ala~  387 (467)
T COG2211         309 LLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKL-GLALAG  387 (467)
T ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHH-HHHHHH
Confidence            777777766666554  445555555667777777766666666654432       3456677777666666 888888


Q ss_pred             chhhhhhcccc
Q 008957          478 PLVGVLQDHVN  488 (547)
Q Consensus       478 ~~~g~l~~~~~  488 (547)
                      .+.|++.+..|
T Consensus       388 ~~~g~~L~~~G  398 (467)
T COG2211         388 FIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHcC
Confidence            88888876544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.72  E-value=2.6e-16  Score=148.34  Aligned_cols=392  Identities=12%  Similarity=0.107  Sum_probs=225.7

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc-CCceehHHHHHHHHHHHHhhhccc--cHHHHHHHHHHhhhhh
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGE  184 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~  184 (547)
                      ..+.+|+++++..-+.++|..-.-+..+++|+++||+ |+|++++.|.+++.+|.++.+.++  +...++++-.+.++|.
T Consensus        52 ~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~  131 (498)
T COG3104          52 LGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGT  131 (498)
T ss_pred             ccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcc
Confidence            3444669999998888988888889999999999997 999999999999999999999884  7889999999999999


Q ss_pred             hhhhhcccccccccCCCC--CcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccC
Q 008957          185 ASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (547)
                      |..-+...++++|.+|++  +|-..+++++++.++|+.++|++.+++.+.+||...|.+.++-.....+..+ +.+....
T Consensus       132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~-~~~r~~~  210 (498)
T COG3104         132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL-LGRRHVK  210 (498)
T ss_pred             ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH-Hccchhc
Confidence            999999999999999863  4778899999999999999999999999999999999988776655444444 3333322


Q ss_pred             CCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhh----------------hhhhhhhhhhhHhh
Q 008957          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRF----------------LNQLSQFSQDTKVL  326 (547)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~  326 (547)
                      .....+++.............  .   -........ .......+.....                ....+.. +..+++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~-~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~  283 (498)
T COG3104         211 GIGGVPDPNPLSFNFLLPVLG--G---LVVMILAAL-LTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRL  283 (498)
T ss_pred             CCCCCCCccchhhhhhhhhHH--H---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHH
Confidence            221111111110000000000  0   000000000 0000000000000                0000000 000111


Q ss_pred             c-ccchhHHHHHHHHHHHHHHHHHhhhccceeEee-ccCchhhHhhhhhhcccccccceeeeeeeeccccc--ch-hHHH
Q 008957          327 L-QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGAT--IS-NAFK  401 (547)
Q Consensus       327 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~-~~~~  401 (547)
                      + --+.+....+.+.++......+..+.-...... ++.+.....+.++..+.-++..++..++..+.+++  .+ ...+
T Consensus       284 ~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~K  363 (498)
T COG3104         284 LAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIK  363 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchH
Confidence            0 011222222222333333333344433333333 33332233444555555555555556665664333  22 1223


Q ss_pred             HHHHHHHHHHHHHHHHHH---h------hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhc
Q 008957          402 LLSAATFLGAISCLTAFC---L------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  472 (547)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g  472 (547)
                      .-+...+.++..+++...   .      .+.++.+...++..++--+..+.....+....|+...+..++.... .+..|
T Consensus       364 FalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfL-t~a~~  442 (498)
T COG3104         364 FALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFL-TVAAG  442 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHH-HHHHH
Confidence            333333333333333222   1      2456666677777777777778888888899999999999998744 33336


Q ss_pred             CCCccchhhh------hhcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          473 DVPSSPLVGV------LQDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       473 ~~~~~~~~g~------l~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      ..++..+.+.      ..+.. .....|...+...++.....+
T Consensus       443 ~~l~g~va~~~~~~~~~~~~~-~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         443 QTLGGQVAGLTAVTDPAYTAF-IEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHhhceecccccccchhhhhh-hhhhhHHHHHHHHHHHHHHHH
Confidence            6665555552      22221 233556666665554444433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.69  E-value=8e-17  Score=153.68  Aligned_cols=185  Identities=16%  Similarity=0.138  Sum_probs=146.7

Q ss_pred             CchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCcccccccccc-ccccCccchhHHHHHHHHHHhhhhhhhhhh
Q 008957           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASL  140 (547)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l  140 (547)
                      .+||.+.++.+..++.....+++...                ..|.+++ |.+.+.+..|++.++..+|.+++++.+|..
T Consensus        31 t~wrsi~l~~~~sfl~~v~~sI~~~s----------------~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~W   94 (488)
T KOG2325|consen   31 TNWRSIYLALLNSFLVAVQFSIYLTS----------------MWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIW   94 (488)
T ss_pred             CchHhHHHHHHHHHHHhhhheEEEee----------------cchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccc
Confidence            34567777777777776666655421                1245544 577888899999999999999999999999


Q ss_pred             hhhcCC-ceehHHHHHHHHHHHHhh-hc---cc-cHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHh
Q 008957          141 AKSHNP-FRLIGVGLSVWTFATAGC-GS---SF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC  214 (547)
Q Consensus       141 ~dr~Gr-r~~l~~~~~~~~~~~~~~-~~---a~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  214 (547)
                      ..|.+. |+.++.|.++..+|+++. ++   .+ ..+.++++|++.|+|.+ ......+|+++....++|.++++....+
T Consensus        95 s~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~  173 (488)
T KOG2325|consen   95 SNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGG  173 (488)
T ss_pred             ccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhH
Confidence            999986 888999999999999887 32   34 67889999999999987 4566889999998889999999999999


Q ss_pred             hhhhhhhhhhhHHhhcCC--CC-----------chhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          215 IPTGVALGYVYGGVVGSH--LN-----------WRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       215 ~~~G~~~g~~l~~~l~~~--~g-----------wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      ..+|.++||.++..+..-  -|           +..+-|+.+++.++..+..+++.+|..+.
T Consensus       174 ~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  174 FVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             HHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            999999999888766521  11           34667888888888888888887775544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.65  E-value=2.4e-16  Score=130.48  Aligned_cols=138  Identities=29%  Similarity=0.388  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCC
Q 008957          122 LSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV  201 (547)
Q Consensus       122 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  201 (547)
                      +.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..++++++.+++.+++.|++.+...+....++.|.+|+
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          202 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       202 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      ++|++..++.+....+|..+++.+++.+.+..+|++.|++.++..++..+..+++.||
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999998999999999998888777777766654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.63  E-value=3e-14  Score=132.05  Aligned_cols=330  Identities=13%  Similarity=0.037  Sum_probs=222.5

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcC-----Ccee-hHHHHHHHHHHHHhhhc-----cc-------
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-----PFRL-IGVGLSVWTFATAGCGS-----SF-------  168 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~-l~~~~~~~~~~~~~~~~-----a~-------  168 (547)
                      -+..|++++....+.+.+...+... ..+.+|+.+|+.+     ||.. +..|.++...+..+..+     +.       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            4667899999999999998888775 5888999999998     7754 55566666665555443     22       


Q ss_pred             cH--H--HHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHH
Q 008957          169 DF--W--SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI  244 (547)
Q Consensus       169 ~~--~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~  244 (547)
                      +.  +  ...+.-.+.|+|.+...+...++++|..|+++|+++.++...+.-+|.+++..+.+.+.+.+.-.-...+...
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~  163 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG  163 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence            22  2  2344566779999999999999999999999999999999999999999999999988876653322222222


Q ss_pred             HHHHHHHHHHhhc--cCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhh
Q 008957          245 LMLPFAVLAFVIK--PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  322 (547)
Q Consensus       245 ~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (547)
                      ..++..++...-.  .|.+.....+.++                                           +...++.+.
T Consensus       164 ~a~i~~~l~~ia~wg~E~r~~~~~~~~~-------------------------------------------~~~~~f~~a  200 (403)
T PF03209_consen  164 VALIALLLNLIALWGQEPRRSRRAAAAE-------------------------------------------RPRPPFREA  200 (403)
T ss_pred             HHHHHHHHHHHHHHhcccCCcccccCCC-------------------------------------------CCCccHHHH
Confidence            2222222222211  2211111010000                                           001122355


Q ss_pred             hHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeee-cccccchhHH
Q 008957          323 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILD-QMGATISNAF  400 (547)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~  400 (547)
                      ++++..+|....+....+.....++.--..+-.|.-+.++++..+. .++.....+..+|....|++.. |.+++     
T Consensus       201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-----  275 (403)
T PF03209_consen  201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-----  275 (403)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-----
Confidence            6677788888887777777777777777778888888899986443 5666667778888888888766 44444     


Q ss_pred             HHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCcc
Q 008957          401 KLLSAATFLGAISCL---TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  477 (547)
Q Consensus       401 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~  477 (547)
                      +....++..++.++.   +.....+.+.+....++.|++.+.........+++...++..|..+|.-...+.. +..++.
T Consensus       276 ~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~-A~Glg~  354 (403)
T PF03209_consen  276 RTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAI-ARGLGT  354 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHH-HHHHHH
Confidence            333333333333332   2333456777777888888888877777777888888888999999987655554 667777


Q ss_pred             chhhhhhcc
Q 008957          478 PLVGVLQDH  486 (547)
Q Consensus       478 ~~~g~l~~~  486 (547)
                      .++|.+.|.
T Consensus       355 ~~GG~~~D~  363 (403)
T PF03209_consen  355 FLGGALRDL  363 (403)
T ss_pred             HHHHHHHHH
Confidence            788877763

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.56  E-value=1.4e-13  Score=133.90  Aligned_cols=318  Identities=13%  Similarity=0.107  Sum_probs=211.9

Q ss_pred             HHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhh--hhhhhhhcccccccccCCCC
Q 008957          125 AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV--GEASFISLAAPFIDDNAPVP  202 (547)
Q Consensus       125 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~--~~~~~~~~~~~~i~~~~~~~  202 (547)
                      ...+...+.++..|.++||+|||..+....+...+..+...+.. +|.+ +   +.|+  +.+.......++++|....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchh
Confidence            34677888999999999999999999999999988888877766 3333 3   4443  23346677889999999999


Q ss_pred             CcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCC-ccccccccccccC
Q 008957          203 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE-SGKAQVVASVSEG  281 (547)
Q Consensus       203 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~  281 (547)
                      +|...+++.+..+..+..++|.+++.+....|.-.+|++..+..++..+...+..||+......+. ..+..    .   
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~----~---  217 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL----T---  217 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc----C---
Confidence            999999999999999999999999999999999999999999999988888888888665433221 00000    0   


Q ss_pred             CcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHH-HHhhhccceeEee
Q 008957          282 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG-AYSYWGPKAGYNI  360 (547)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~  360 (547)
                        ....            ..            ....+..+..+..-.+|..+.+.+..+....... ...-..+.|+...
T Consensus       218 --~~~~------------~~------------~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~  271 (463)
T KOG2816|consen  218 --PGSL------------DS------------SHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK  271 (463)
T ss_pred             --CCcc------------cc------------hhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee
Confidence              0000            00            0001111222222234444444443333333322 2232447788888


Q ss_pred             ccCchhhH-hhhhhhcccccccceeee-eeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 008957          361 YHMSNADM-MFGGVTIVCGIVGTISGG-FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVF  438 (547)
Q Consensus       361 ~~~~~~~~-~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (547)
                      ++++.... .+.+.....+.++.++.. .+...++.+     ..+..+...-........+....|...... +...+..
T Consensus       272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-----~~i~lGl~~~~~~~~~~af~~~~w~~~~~~-v~~~~~~  345 (463)
T KOG2816|consen  272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK-----RLISLGLLSEFLQLLLFAFATETWMMFAAG-VVVALAG  345 (463)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHhhHHHHHHHHHHHHHHHhccchhhhHHH-HHHHhhc
Confidence            88887665 344555566666666665 556667776     544444444444444444445555443333 3334445


Q ss_pred             hcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhccc
Q 008957          439 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  487 (547)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  487 (547)
                      ...+...+.......++.+|++.++...+... ...++|.+.+.+...+
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l-~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGL-SGVVSPALYGNIFALT  393 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhHHHHHHHH-hhhhhHHHHHHHHHHH
Confidence            66677777888888899999999999777776 7678898888886544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.56  E-value=7.5e-15  Score=144.02  Aligned_cols=343  Identities=13%  Similarity=0.062  Sum_probs=207.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcC-----CceehHHHHHHHHHHHHhhhcc----ccHHHHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-----PFRLIGVGLSVWTFATAGCGSS----FDFWSIAIC  176 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~a----~~~~~l~~~  176 (547)
                      +.+++++|+++.+.....+...+...+ -+++|.++|.+.     ||+-++++.++.+++.+..+..    .+.....++
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~   92 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL   92 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence            778999999999999999988888855 566799999763     5556677777776655555442    356677778


Q ss_pred             HHHhhhhhhhhhhcccccccccCC--CCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 008957          177 RMLVGVGEASFISLAAPFIDDNAP--VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (547)
Q Consensus       177 r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  254 (547)
                      -++..+|.+....++-+++.|...  +++||...+.......+|.+++..++|.+.+..++|+.|.+.+++..+..+..+
T Consensus        93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~  172 (433)
T PF03092_consen   93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVAL  172 (433)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence            888899999999999999999984  344788888888999999999999999999999999999999988888777777


Q ss_pred             hhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHH
Q 008957          255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (547)
Q Consensus       255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (547)
                      ++.+| .+.....+.....                   ++ +            ........++.....+..++.+.++.
T Consensus       173 ~~~~e-~~~~~~~~~~~~~-------------------~~-~------------~~~~~~~~~~~~~~l~~~~~~~~i~~  219 (433)
T PF03092_consen  173 FLLEE-RKVRPADEVFSFG-------------------KE-E------------VPCLFGSFREQLSELWRALQQRAIWQ  219 (433)
T ss_pred             Hhhhh-ccccccchhhccc-------------------cc-c------------cchhhHHHHHHHHHHHHHHhhhHHHH
Confidence            77665 1111110000000                   00 0            00000112333455566777777776


Q ss_pred             HHH-HHHHHHHHHHHHhhhccceeEeecc---CchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHH
Q 008957          335 NVL-GYIAYNFVIGAYSYWGPKAGYNIYH---MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  409 (547)
Q Consensus       335 ~~~-~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  409 (547)
                      ..+ ..++.......-....-.+..+..+   +++.-. .+..+..++.++|..+    -.++.++...| .++....++
T Consensus       220 ~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~----y~~~~~~~~~R-~~~~~t~~~  294 (433)
T PF03092_consen  220 PILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILL----YRKYFSNWSWR-RIFVVTTLV  294 (433)
T ss_pred             HHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCHH-HHHHHHHHH
Confidence            655 2222222211110101112222233   333222 1122223344444443    33433332221 444444443


Q ss_pred             HHHHHHHHHH----------hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccch
Q 008957          410 GAISCLTAFC----------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  479 (547)
Q Consensus       410 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~  479 (547)
                      .....+.-..          .++.+..+.--.+........+.+......+..|+..-|+..++..++.|+ |..++..+
T Consensus       295 ~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nl-g~~~s~~l  373 (433)
T PF03092_consen  295 SVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNL-GSSVSSTL  373 (433)
T ss_pred             HHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH-HHHHHHHH
Confidence            3333222110          111122223334444455556666777888999999999999999888888 77777777


Q ss_pred             hhhhhcccc
Q 008957          480 VGVLQDHVN  488 (547)
Q Consensus       480 ~g~l~~~~~  488 (547)
                      +..+.+..+
T Consensus       374 g~~l~~~~~  382 (433)
T PF03092_consen  374 GAFLMELFG  382 (433)
T ss_pred             HHHHHHHcC
Confidence            777765544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.55  E-value=2.6e-14  Score=140.78  Aligned_cols=146  Identities=16%  Similarity=0.210  Sum_probs=128.7

Q ss_pred             ccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc----cHHHHHHHHHHhhhhhhhhhhcc
Q 008957          116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLA  191 (547)
Q Consensus       116 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~----~~~~l~~~r~l~G~~~~~~~~~~  191 (547)
                      ..+.+...++..++..++.++.|+++||+|||++++++.++.+++..+...+.    +++.+++.+++.|++.+...+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~  329 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG  329 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            36679999999999999999999999999999999999999998877666532    24667889999999999888888


Q ss_pred             cccccccCCCCCcchhhhHHH-HhhhhhhhhhhhhHHhhcCC------CCchhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          192 APFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSH------LNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       192 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      ..++.|++|+++|++++++.+ ...++|.++||+++|++.++      +||++.|++.+++.++.+++.+++.+|+.
T Consensus       330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999997 67889999999999999876      57999999999999998888888887653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.51  E-value=1.1e-13  Score=135.61  Aligned_cols=149  Identities=15%  Similarity=0.094  Sum_probs=126.0

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~  186 (547)
                      .+++++|.+..+.+++.+...++..++.+++|+++||+|||+.+..+.+...+......++++.+.+++.+++.+++.+.
T Consensus       242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI  321 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45677899999999998888888889999999999999999988887766666555555677888888899999888887


Q ss_pred             hhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      ..+....+..|..|+ +|++++++++...++|..+++.+++.+.++.||++.|++.+++.++..++.++.
T Consensus       322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            777777888899886 599999999999999999999999999998999999998888777766555544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.49  E-value=1.6e-13  Score=138.42  Aligned_cols=155  Identities=10%  Similarity=0.033  Sum_probs=118.8

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHh---hhccccHHHHHHHHHHhhhhh
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      +.+++|.+..+.++..+...++..++.+..|+++||+|||+.++++.++..++.+.   ...+++...++++|++.|++.
T Consensus       277 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  356 (490)
T PRK10642        277 LSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVIL  356 (490)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            45678888888888888899999999999999999999999988887654443322   223456788888999999887


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC-CchhHHHHHHHHHHHHHHHHHhhccCccCC
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (547)
                      +........++.|.+|++.|+.++++.+....++..++|.+.+++.+.. +|+.++++..+++++..+..+ +.||+++.
T Consensus       357 ~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~  435 (490)
T PRK10642        357 NCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANR  435 (490)
T ss_pred             HHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCC
Confidence            7777777888899999999999999754445555678888888877654 478887777776666655544 44777654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.49  E-value=9.9e-13  Score=120.10  Aligned_cols=234  Identities=12%  Similarity=0.086  Sum_probs=155.0

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhh
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~  187 (547)
                      +-+++|.+..|++.+....+...++...+.|.++||+|||+.-++-+++++++++ +-..++++.++++|++.|++.+..
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLL  138 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLL  138 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHH
Confidence            4468999999999999999999999999999999999999999999999999886 555689999999999999999999


Q ss_pred             hhcccccc-cccCC----CCCcchhhhHHH-HhhhhhhhhhhhhHHhhcCCCC--chhHHHHHHHHHHHHHHHHHhhccC
Q 008957          188 ISLAAPFI-DDNAP----VPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       188 ~~~~~~~i-~~~~~----~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      +.+-.+++ .|.-.    ++..+..++... ..+++-.+++.+++.++.+..+  -.++|....++.++..++....-+|
T Consensus       139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence            88877764 44422    222222222222 2223334455556666665554  4788988877777666665544444


Q ss_pred             ccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHH
Q 008957          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (547)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (547)
                      ....   +.+.+                                          +..++..+.++.++++|+++.+.+..
T Consensus       219 Nyg~---~~~~~------------------------------------------~~~~~~~~a~~~i~~d~ril~LG~~q  253 (354)
T PF05631_consen  219 NYGD---TSSSS------------------------------------------SLSGSFREAWRAILSDPRILLLGLIQ  253 (354)
T ss_pred             cCCC---ccccc------------------------------------------chHHHHHHHHHHHHcCchhHHHHHHH
Confidence            2211   00000                                          11112234567788899999988888


Q ss_pred             HHHHHHHHHHh-hhccceeEeeccCchhhHhhhhhhcccccccceeeeeee
Q 008957          340 IAYNFVIGAYS-YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFIL  389 (547)
Q Consensus       340 ~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  389 (547)
                      .++-...+.+. .|.|.+-.+..+. |. ..+...+.++..+|+.+..++.
T Consensus       254 slFE~smy~FVflWtPaL~~~~~~~-P~-GlIFssFM~a~MlGS~lf~~l~  302 (354)
T PF05631_consen  254 SLFEGSMYLFVFLWTPALDPDDEEL-PL-GLIFSSFMVAMMLGSSLFSRLL  302 (354)
T ss_pred             HHHHHHHHHheeeeeceecCCCCCC-Cc-hHHHHHHHHHHHHHHHHHHHHH
Confidence            88877766654 5777665221111 22 2333445566666666654433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.49  E-value=1.5e-12  Score=122.36  Aligned_cols=352  Identities=10%  Similarity=-0.005  Sum_probs=224.1

Q ss_pred             cccccc-cccCccchh-HHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          106 SGIQGD-FKLNNFQDG-VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       106 ~~i~~~-~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      |.+.+. .|+|..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++.-+.++...+-+..++-|++
T Consensus        28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~  107 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA  107 (412)
T ss_pred             HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence            556664 788888874 556677778888999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC--CCCchhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~--~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      .+. ..+-++++--..|+++-.++.+...++.-+|..++.++|..+.+  ..+.+...++......+..+ ..+++|..+
T Consensus       108 ~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~-~~~fLP~~~  185 (412)
T PF01770_consen  108 TAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALL-IALFLPMPK  185 (412)
T ss_pred             HHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHcCCCC
Confidence            985 66688889888999999999999999999999999999988875  34456666655544444434 434445433


Q ss_pred             CCCCCCCccccccccccccCCcCCCCCcccccccccc-hhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHH
Q 008957          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ-ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (547)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (547)
                      +..--.++...... .  .+.+...     .++.++. .+.+...+..........+..+++++...++|.++...+-+.
T Consensus       186 ~S~~f~r~~~~~~~-~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa  257 (412)
T PF01770_consen  186 RSLFFHRKPPAEQD-A--NESESDK-----MNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWA  257 (412)
T ss_pred             cccceeccCccccc-c--ccccccc-----cccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence            22111111000000 0  0000000     0000000 011111111122222455677788888899999888888777


Q ss_pred             HHHHHHHHHhhhccceeEee---ccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHH
Q 008957          341 AYNFVIGAYSYWGPKAGYNI---YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (547)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (547)
                      +...+++.+.+|......+.   .+.+......-++..+.+.++.+..|++-.++.+...   ..+....++.+...+++
T Consensus       258 ~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~---l~l~~~S~l~a~~L~lm  334 (412)
T PF01770_consen  258 FATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE---LALGVFSLLQAGLLFLM  334 (412)
T ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH---HHHHHHHHHHHHHHHHH
Confidence            77777776666665544444   1111112233344445556666777777444444310   23344445555556666


Q ss_pred             HHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHh
Q 008957          418 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  470 (547)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~  470 (547)
                      ...++.|...+...+.........+....-++.....+.-|-..|+.+.+.-.
T Consensus       335 ~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~  387 (412)
T PF01770_consen  335 SFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALV  387 (412)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHH
Confidence            66778888887777777776666665555566666667777777776444333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.48  E-value=1.4e-13  Score=136.39  Aligned_cols=147  Identities=10%  Similarity=0.043  Sum_probs=130.7

Q ss_pred             cccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcc
Q 008957          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLA  191 (547)
Q Consensus       112 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~  191 (547)
                      .+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666788999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             cccccccCCCCCcchhhhH-HHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhcc
Q 008957          192 APFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (547)
Q Consensus       192 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  258 (547)
                      ..++.|.+|++.|+...+. ++....+|.++++.+.|++.+..|||..|++.+++.++..++.++..+
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999887665 677788999999999999999999999999998888777666665553

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.47  E-value=6.6e-14  Score=136.96  Aligned_cols=144  Identities=12%  Similarity=0.019  Sum_probs=126.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccH--HHHHHHHHHhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVG  183 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--~~l~~~r~l~G~~  183 (547)
                      +.+.++++.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++..++.++..+.++.  ..+++..++.|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  308 (377)
T TIGR00890       229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFT  308 (377)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence            44567788888889999999999999999999999999999999999999999988887776643  3355677888888


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHH
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  249 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~  249 (547)
                      .+...+....++.|.+|+++|+++.++.+....+|..++|.+++.+.++.||++.|++.+++.++.
T Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            888888888899999999999999999999999999999999999999999999999988766553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.46  E-value=1.5e-13  Score=141.47  Aligned_cols=140  Identities=9%  Similarity=-0.040  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccC
Q 008957          120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  199 (547)
Q Consensus       120 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  199 (547)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+..++...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45566778999999999999999999999999999999999999999999888889999999988889999999999999


Q ss_pred             CCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       200 ~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      |.++|++++|+.++...+|.++||++++.+.+. +...+|++.+++.++.+++.++ +||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCc
Confidence            999999999999999999999999999987753 4567888887777666555554 47643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.45  E-value=3.8e-13  Score=132.56  Aligned_cols=147  Identities=16%  Similarity=0.136  Sum_probs=128.7

Q ss_pred             cccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhh
Q 008957          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  189 (547)
Q Consensus       110 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~  189 (547)
                      ++.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.++.+.+++.+++.|++.+...+
T Consensus       244 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  321 (399)
T PRK05122        244 AARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFP  321 (399)
T ss_pred             HHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHH
Confidence            34454  3457777889999999999999999999999999999999998888888888988888999999999998888


Q ss_pred             cccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhcc
Q 008957          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (547)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  258 (547)
                      .....+.|.+|+++|+++.++++....+|..+++++.+.+.++.||++.|++.++..++..++.+++.+
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888888899999999999999999999999999999999999899999999998888777666665543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.43  E-value=1.1e-12  Score=130.10  Aligned_cols=155  Identities=17%  Similarity=0.113  Sum_probs=138.1

Q ss_pred             cccccc-cccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      |.+.++ +|.+..+.|++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.++++.++.|++.
T Consensus       247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  326 (417)
T PRK10489        247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLS  326 (417)
T ss_pred             HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            444455 8999999999999999999999999999999988888888988888888888888898888888999999999


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCc
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  260 (547)
                      +...+...+++.|..|++.||++++++.....+|..+|+.+.|++.+..|++..+++.++..++..++.+...|+.
T Consensus       327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        327 AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            8887888889999999999999999999999999999999999999999999999999888877777777766653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.43  E-value=4.4e-13  Score=129.76  Aligned_cols=150  Identities=19%  Similarity=0.171  Sum_probs=138.9

Q ss_pred             cccccc-cccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCce-ehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       106 ~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      |.+.++ +|.++.+.++..+...++..++.++.|++.||+|||+ .+..+.++..++.++..+.++.+.+++..++.|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~  278 (352)
T cd06174         199 PLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFG  278 (352)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            444444 4889999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHh
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  255 (547)
                      .+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|++.+++.+++.++..+..++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         279 LGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            999999999999999999999999999999999999999999999999899999999999988877665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK12382 putative transporter; Provisional

Probab=99.43  E-value=8.8e-13  Score=129.60  Aligned_cols=146  Identities=12%  Similarity=0.092  Sum_probs=128.8

Q ss_pred             cccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhh
Q 008957          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  189 (547)
Q Consensus       110 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~  189 (547)
                      ++.+.+  +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++.+...+
T Consensus       244 ~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  321 (392)
T PRK12382        244 ASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFP  321 (392)
T ss_pred             HhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHH
Confidence            444544  356677788888899999999999999999999999999999988888888988888999999999998888


Q ss_pred             cccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      ...+.+.|.+|+++||++.++++....+|..++|.+++++.++.||++.|++.+++.++..++.++..
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        322 ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999999999999999999999988877776666543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.42  E-value=7.9e-13  Score=129.26  Aligned_cols=148  Identities=11%  Similarity=0.153  Sum_probs=127.4

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~  186 (547)
                      .+.+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..++..+.++.+.+++.+++.|++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677899999999998888888888899999999999999999888877777666666778888888899999999998


Q ss_pred             hhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHh
Q 008957          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (547)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  255 (547)
                      ..+....++.|..|++ +++++++++....+|..++|.+++.+.+..||+..|++.++..++..++..+
T Consensus       305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       305 LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            8888888999988764 6799999999999999999999999999899999999998877766665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.41  E-value=1.1e-12  Score=129.69  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=126.1

Q ss_pred             hhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhccccccccc
Q 008957          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  198 (547)
Q Consensus       119 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  198 (547)
                      .+.+.+++.++..++.+.+|++.||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45667777888889999999999999999999999998888888888888899999999999999999999999999999


Q ss_pred             CCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhcc
Q 008957          199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (547)
Q Consensus       199 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  258 (547)
                      .|+++||+.+++++....+|..+||.+++.+.+..||++.|++.+++.++..+..++..+
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988887777666543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.41  E-value=1.6e-12  Score=132.04  Aligned_cols=147  Identities=13%  Similarity=0.071  Sum_probs=116.7

Q ss_pred             cccc-cccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc--ccHHHHHHHHHHhhh
Q 008957          106 SGIQ-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGV  182 (547)
Q Consensus       106 ~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~G~  182 (547)
                      |.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++....  .+.+.+.+..++.+.
T Consensus       299 p~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (496)
T PRK03893        299 PTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQM  378 (496)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence            4444 6899999999999999999999999999999999999999988887777665544433  344445555555544


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHH
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  252 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  252 (547)
                      ......+....++.|.+|+++|++++++.+....+|..+||++++.+.++.||++.+...+....+.+++
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~  448 (496)
T PRK03893        379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVIL  448 (496)
T ss_pred             HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence            4334456677889999999999999999999999999999999999999999999887666544443333

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.40  E-value=9.1e-13  Score=130.23  Aligned_cols=152  Identities=14%  Similarity=0.059  Sum_probs=129.2

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      |.+.++.|.+..+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.+
T Consensus       244 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  323 (406)
T PRK11551        244 PSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVV  323 (406)
T ss_pred             HHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            56667789999999999999999999999999999999999999988877777777777778888888888889999888


Q ss_pred             hhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC-CchhHHHHHHHHHHHHHHHHHhhc
Q 008957          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      ...+...+++.|.+|+++|++.+++.+....+|..+||.+++.+.++. +|...+++.....++..+..++..
T Consensus       324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888999999999999999999999999999999999999998765 466666666655555555444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.39  E-value=9.3e-13  Score=128.67  Aligned_cols=145  Identities=14%  Similarity=0.031  Sum_probs=130.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      |...+|+|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.++++|.+.+++.++++|++.+
T Consensus       229 ~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~  308 (382)
T TIGR00902       229 AIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFA  308 (382)
T ss_pred             HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence            44446799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccccccccCCCCCcchhhhHHH-HhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHH
Q 008957          186 SFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  252 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  252 (547)
                      ...+....++.+. |+++|++..++++ ...++|.++|+.++|++.+++|+ ..|++.++++++..++
T Consensus       309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999998 9889999999986 57889999999999999999996 6788887777654433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.39  E-value=3.5e-13  Score=134.39  Aligned_cols=146  Identities=14%  Similarity=0.167  Sum_probs=123.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc--CCceehHH--HHHHHHHHHHhhhccccHHHHHHHHHHhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGV--GLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  181 (547)
                      |.+.+++|.+..+.+++.++..++..++.++.|+++||.  ++|+...+  +.++.+++.++..++++++.+++.+++.|
T Consensus       265 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G  344 (455)
T TIGR00892       265 VPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFG  344 (455)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            555567899999999999999999999999999999984  33433333  34444555566677889999999999999


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC-CchhHHHHHHHHHHHHHH
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAV  251 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~  251 (547)
                      ++.+...+...+++.|.+|++++++.+++++....+|..+||.++|.+.+.. +|++.|++.+++.++..+
T Consensus       345 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       345 LSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999877 599999999887665544

>PRK03699 putative transporter; Provisional

Probab=99.38  E-value=2.6e-12  Score=126.20  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=128.0

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~  186 (547)
                      .+.+++|++..+.+++.+.+.++..++.+..|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.+.
T Consensus       231 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  310 (394)
T PRK03699        231 YAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSA  310 (394)
T ss_pred             HHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            34467899999999999999999999999999999999999999988888777777777778887877888899998888


Q ss_pred             hhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      .++...++..|..|. ++++..+.......+|..++|.+.+++.+..||+..+++.+++.++..+.+...
T Consensus       311 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        311 IYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence            888877788887764 477888999999999999999999999999999999999988877776655444

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.38  E-value=2.2e-12  Score=127.19  Aligned_cols=148  Identities=14%  Similarity=-0.029  Sum_probs=113.8

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCcee--hH------HHHHHHHHHHHhhhccccHHHHHHHHH
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRL--IG------VGLSVWTFATAGCGSSFDFWSIAICRM  178 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~--l~------~~~~~~~~~~~~~~~a~~~~~l~~~r~  178 (547)
                      .+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.  ..      .+.++..+........++.+..+...+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA  320 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            4556789999999999999999999999999999999999962  11      111111222222222334455554555


Q ss_pred             HhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHHHHHHHHHHHHHHh
Q 008957          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV  255 (547)
Q Consensus       179 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~  255 (547)
                      +.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| |++.|++.++..++..+..++
T Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       321 LGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            5555555 788899999999999999999999999999999999999999999988 999999998887776665544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.38  E-value=2e-12  Score=131.05  Aligned_cols=155  Identities=8%  Similarity=-0.077  Sum_probs=125.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc-----cc------cHHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SF------DFWSIA  174 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~------~~~~l~  174 (547)
                      |.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++     .+      +...+.
T Consensus       308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (481)
T TIGR00879       308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIV  387 (481)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHH
Confidence            6677888999888899999999999999999999999999999999998888887776652     11      233333


Q ss_pred             HHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 008957          175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (547)
Q Consensus       175 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  254 (547)
                      ...++.+.......+....++.|.+|+++|++++++.+....+|.++++.+.+.+.++.+|++.|++.++++++.+++.+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~  467 (481)
T TIGR00879       388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY  467 (481)
T ss_pred             HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHh
Confidence            33333333333344666778899999999999999999999999999999999999888999999999998888888777


Q ss_pred             hhccCc
Q 008957          255 VIKPLQ  260 (547)
Q Consensus       255 ~~~p~~  260 (547)
                      ++.||+
T Consensus       468 ~~~~~~  473 (481)
T TIGR00879       468 FFLPET  473 (481)
T ss_pred             eecccC
Confidence            776663

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03545 putative arabinose transporter; Provisional

Probab=99.36  E-value=5.1e-12  Score=124.03  Aligned_cols=150  Identities=17%  Similarity=0.143  Sum_probs=124.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHH-hhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA-GCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      |.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+. ..+..+..++.. +....++.+.++++.++.|++.
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~  308 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI  308 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            44566689999999999999999999999999999999998865 444444444443 3456678888888999999988


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      +...+.....+.+..| ++|++++++++....+|..+||+++|.+.+++|+|..|++.+++.++..+..++..
T Consensus       309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            7777777778888776 57999999999999999999999999999999999999999988877777666554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.34  E-value=5.3e-12  Score=126.79  Aligned_cols=150  Identities=12%  Similarity=0.004  Sum_probs=117.7

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHH--hhhccccHHHHHHHHHHhhhhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA--GCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~--~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      .+++++|++..+.++..+.+.++..++.+++|+++||+|||+.++....+..++..  +....++.+.+.+.+++.|++.
T Consensus       284 yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  363 (467)
T PRK09556        284 YAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLV  363 (467)
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999987766554444332  2234456777778888888654


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhh-hhhhhhhhHHhhcC------------CCCchhHHHHHHHHHHHHHH
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGS------------HLNWRYAFWGEAILMLPFAV  251 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~------------~~gwr~~f~~~~~~~~~~~~  251 (547)
                      ............|.+|+++||.+.|+.+....+ |..++|.+.|++.+            ..||+..|++.++..++..+
T Consensus       364 ~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~  443 (467)
T PRK09556        364 FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCIC  443 (467)
T ss_pred             hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHH
Confidence            333333345667999999999999999988886 77999999999988            57899999998777776655


Q ss_pred             HHHhh
Q 008957          252 LAFVI  256 (547)
Q Consensus       252 ~~~~~  256 (547)
                      ..+++
T Consensus       444 ~~~~~  448 (467)
T PRK09556        444 LMAIV  448 (467)
T ss_pred             HHHHH
Confidence            55544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.32  E-value=1e-11  Score=121.76  Aligned_cols=154  Identities=12%  Similarity=0.133  Sum_probs=123.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc-cccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-SFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-a~~~~~l~~~r~l~G~~~  184 (547)
                      |.+.+++|.+..+.|...+.+.++..++.+..|++.||+|||+.+..+..+..++.++... .++...+.  -++.|++.
T Consensus       229 p~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~  306 (393)
T PRK09705        229 PAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGL  306 (393)
T ss_pred             HHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhc
Confidence            4455568999999999999999999999999999999999999999988887777665543 33332222  34568888


Q ss_pred             hhhhhcccccccccCC-CCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          185 ASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      +...+.......+..+ +++|++..++.+....++..++|.+.+++.+..| |...|++.++.+++..+....+.||++
T Consensus       307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            8777877767777775 5689999999999999999999999999998876 888888888887777777677767744

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.32  E-value=9.6e-12  Score=121.60  Aligned_cols=147  Identities=10%  Similarity=0.075  Sum_probs=123.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      |...++.|.+..+.+++.+.+.++..+++++.|++.||+|+|+++..+.++.+++.+...  + ...+....++.|++..
T Consensus       224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~  300 (381)
T PRK03633        224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGF  300 (381)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHH
Confidence            555566788988999999999999999999999999999999999988888877765543  2 2344567788888877


Q ss_pred             hhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHh
Q 008957          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  255 (547)
                      ...|...+.+.|..|+++++...+.+....++|..+||.++|++.++.||++.|++.+...++..+..++
T Consensus       301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999998888888888888999999999999999999999999999988877655544443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.32  E-value=3.3e-12  Score=125.74  Aligned_cols=141  Identities=9%  Similarity=0.010  Sum_probs=114.9

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHH--Hhhhc--cccHHHHHHHHHHhhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGS--SFDFWSIAICRMLVGV  182 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--a~~~~~l~~~r~l~G~  182 (547)
                      .+++++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..  ++..+  .++.+.+++..++.|+
T Consensus       245 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (394)
T TIGR00883       245 YLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLAL  324 (394)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            3447789999999999999999999999999999999999998776554444333  12222  3567777888899999


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhH-HHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHHHHHHH
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILML  247 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~  247 (547)
                      +.+...+...+++.|.+|+++|+++.++ ++.+..+|..++|.+++++.++.| |++.++...+..+
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       325 IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            9988999999999999999999999998 456677899999999999999888 9888777765443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.31  E-value=1.7e-11  Score=122.29  Aligned_cols=151  Identities=20%  Similarity=0.218  Sum_probs=137.4

Q ss_pred             cccc-cccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQ-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      |.+. +++|.++..+|++.+++.+|..+|++..+++.+|+++++++..+.++++++.+..+++++.+..++.-++.|++.
T Consensus       242 Pl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~  321 (524)
T PF05977_consen  242 PLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAW  321 (524)
T ss_pred             hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            5554 568999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      ....+...+.+.+..|++.|||+++++++....+..+|.++.|.+.+.+|-+..+.+.++..++..++.+..
T Consensus       322 ~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  322 IIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999988999999999999999999999999999999999999999999999999988877665555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.29  E-value=2.9e-12  Score=126.69  Aligned_cols=137  Identities=13%  Similarity=0.114  Sum_probs=116.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHH-HhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      +.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++..+.. .+....++.+.+.+..++.|++.
T Consensus       263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (405)
T TIGR00891       263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV  342 (405)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            34556789999999999999999999999999999999999999988877663333 33344567777777778888777


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHH
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGE  242 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~  242 (547)
                      +...+....++.|.+|+++|++++|+.+....+|..++|+++|++.++.| |+..+...
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            77778888999999999999999999999999999999999999999888 87766654

>TIGR00897 2A0118 polyol permease family

Probab=99.27  E-value=3.4e-11  Score=118.54  Aligned_cols=149  Identities=15%  Similarity=0.085  Sum_probs=119.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehH-HHHHHHHHHHHhhh-----ccccHHHHHHHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCG-----SSFDFWSIAICRML  179 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~-----~a~~~~~l~~~r~l  179 (547)
                      |.+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+.+..+++.+...     ..++++.+++..++
T Consensus       246 p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (402)
T TIGR00897       246 PMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIA  325 (402)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence            6666789999999999999999999999999999999999988764 33333344333322     23567777888999


Q ss_pred             hhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      .|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+..||+..|++.++..++..++.+|.
T Consensus       326 ~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       326 LGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            9988887655 3456677655 5799999999999999999999999999999999999999998887777666654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.26  E-value=1.9e-11  Score=115.96  Aligned_cols=189  Identities=10%  Similarity=0.007  Sum_probs=142.5

Q ss_pred             hhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccch
Q 008957          318 QFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATIS  397 (547)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  397 (547)
                      ..+.....++.++....+.+......++...+.+++=-++++..+.+..-.....+...+.++.-++.+++++|+|+-  
T Consensus       359 ~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv--  436 (618)
T KOG3762|consen  359 SVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV--  436 (618)
T ss_pred             HHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc--
Confidence            334444456777777666666666666665565555556777654443222334555677888888999999999998  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCcc
Q 008957          398 NAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  477 (547)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~  477 (547)
                         +++.++..+...=++......|+|..+.+=++-+...+..+..+.+++....||+.++++.++.......+|-.+|+
T Consensus       437 ---~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gs  513 (618)
T KOG3762|consen  437 ---NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGS  513 (618)
T ss_pred             ---ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhh
Confidence               67766666666667777777899999988899999999999999999999999999999999998888878999999


Q ss_pred             chhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008957          478 PLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  512 (547)
Q Consensus       478 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (547)
                      +++|.+...++ -+..|..+++.+++..++...+.
T Consensus       514 lIGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  514 LIGGFVVERFG-ARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hhhhhhheeeh-hHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999987 45777777777666666555544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.24  E-value=1.8e-11  Score=123.86  Aligned_cols=155  Identities=9%  Similarity=-0.020  Sum_probs=120.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc--c-HH-HHHHHHHHhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--D-FW-SIAICRMLVG  181 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~-~~-~l~~~r~l~G  181 (547)
                      |.+.+++|.+....++......++..++.++.|+++||+|||++++.+.++.+++.++.+...  + .+ ....+.++.+
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~  374 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  374 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            677778888877777888888889999999999999999999999999999988887765431  2 11 2223334444


Q ss_pred             hhhhh-hhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHh------hcCCCCchhHHHHHHHHHHHHHHHHH
Q 008957          182 VGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV------VGSHLNWRYAFWGEAILMLPFAVLAF  254 (547)
Q Consensus       182 ~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~------l~~~~gwr~~f~~~~~~~~~~~~~~~  254 (547)
                      .+.+. ..+....++.|.+|+++|+.++++......+|..+++.+.+.      +.+..+|++.|++.++++++.+++.+
T Consensus       375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (479)
T PRK10077        375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  454 (479)
T ss_pred             HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence            44443 236678999999999999999999999999998888655543      44678999999999988888877777


Q ss_pred             hhccCc
Q 008957          255 VIKPLQ  260 (547)
Q Consensus       255 ~~~p~~  260 (547)
                      ++.||+
T Consensus       455 ~~~~e~  460 (479)
T PRK10077        455 KFVPET  460 (479)
T ss_pred             hccccC
Confidence            776764

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.23  E-value=3.6e-11  Score=117.59  Aligned_cols=141  Identities=16%  Similarity=0.087  Sum_probs=121.9

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~  186 (547)
                      ...+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+.
T Consensus       230 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  309 (382)
T PRK11128        230 IYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTV  309 (382)
T ss_pred             HHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            34467899999999999999999999999999999999999999999999999888888999999999999999999998


Q ss_pred             hhhcccccccccCCCCCcchhhhHHH-HhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHH
Q 008957          187 FISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  249 (547)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~  249 (547)
                      ..+....++.+. +++++++..++++ ...++|..+||.++|.+.+.+|+ ..|+..+++.++.
T Consensus       310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            888888888887 5556788888886 55678889999999999999887 5677666655443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.22  E-value=1.6e-11  Score=113.63  Aligned_cols=174  Identities=17%  Similarity=0.183  Sum_probs=145.6

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHH
Q 008957          328 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (547)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  406 (547)
                      |.+.+....+.+..+++.--.+..-.|.+.++ ++.+..+. .+.+...+..-++.++.|.++||.+.|     ..+..+
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr-----~fm~~g  100 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR-----YFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-----eeehHH
Confidence            34556666777777777777788888877666 44665554 556777888999999999999999999     788888


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchh--hhhh
Q 008957          407 TFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV--GVLQ  484 (547)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~--g~l~  484 (547)
                      .+++++..++..+.++.+.+.++..+.+.+.+..+|+..-.+.+-+++++||+..++-|+..|+ |+.+.|.+.  +++.
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNi-GGal~~~~~~la~~~  179 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNI-GGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhc-ccchHHHHHHHHHHH
Confidence            8888888888888889999999999999999999999999999999999999999999999999 777778888  8888


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHH
Q 008957          485 DHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      ++. +|+.+|++-++++++..++.+
T Consensus       180 ~~~-~w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         180 FHG-GWRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             hcc-chhHHHHHHHHHHHHHHHHHH
Confidence            875 699999999988776666554

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.22  E-value=3.5e-11  Score=119.66  Aligned_cols=167  Identities=16%  Similarity=0.187  Sum_probs=124.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHH
Q 008957          331 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  409 (547)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  409 (547)
                      .++..++..++.+.....+..+.|.+.++ .+.+.... .+.....++..++.++.|++.||+|+|     +.+..+.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~~~~~~~~   97 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR-----YFMGIGLIA   97 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc-----hhHHHHHHH
Confidence            34444555555555555667778887776 56665443 555677788899999999999999999     677777766


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccch
Q 008957          410 GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  489 (547)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~  489 (547)
                      ..+..++....++.+...+..++.+++.+..++.....+.+.+++++|+++.++.+...+. |.+++|.+.+++.+..| 
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g-  175 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNV-GGALIPLVVGAIALHYG-  175 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc-
Confidence            6666666666666666666666667777777777777888888889999999999877777 88889999999988765 


Q ss_pred             hHHHHHHHHHHHHHHH
Q 008957          490 WRKTTLALTSIFFLAA  505 (547)
Q Consensus       490 ~~~~~~~~~~~~~~~~  505 (547)
                      |+..|++.+++.++..
T Consensus       176 w~~~f~~~~i~~~~~~  191 (434)
T PRK11663        176 WRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888776655443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.20  E-value=1.1e-10  Score=117.39  Aligned_cols=151  Identities=9%  Similarity=0.042  Sum_probs=120.8

Q ss_pred             cccccccccCccchhHHHH-HHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhh---hcc-ccHHHHHHHHHHh
Q 008957          106 SGIQGDFKLNNFQDGVLSS-AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-FDFWSIAICRMLV  180 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a-~~~~~l~~~r~l~  180 (547)
                      |.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++.   +.. ++.+.+.+.-++.
T Consensus       247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~  326 (491)
T PRK11010        247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE  326 (491)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            5556778999999999975 6678999999999999999999998777666555544322   333 4555555566666


Q ss_pred             hhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      .++.+...+...++..+..+++.+++..++.+...++|..+++.++|++.+..||+..|.+.++.+++..+...+.
T Consensus       327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666788888999999999999999999999999999999999999999999999998888876666655

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.1e-10  Score=109.49  Aligned_cols=150  Identities=17%  Similarity=0.099  Sum_probs=128.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-~~~~~l~~~r~l~G~~~  184 (547)
                      |.+++..|.+.+.++++.-+|.++..+|.++.|+++|| +.|+.+....++..+..+...+. ++.+..++.-++.|+..
T Consensus       236 P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~  314 (394)
T COG2814         236 PFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAF  314 (394)
T ss_pred             HHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            88899999999999999999999999999999999999 99999999988777777766654 55566677777788877


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      ..........+++ .-++.++.+.+++...+++|..+|..+||.+.+++|+....++.+++.++..++.+...
T Consensus       315 ~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         315 SPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             hhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776666677777 44567999999999999999999999999999999999999999998888777766554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.20  E-value=1.5e-09  Score=102.49  Aligned_cols=325  Identities=15%  Similarity=0.073  Sum_probs=184.4

Q ss_pred             CccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhccccc
Q 008957          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF  194 (547)
Q Consensus       115 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~  194 (547)
                      +.--.+.+.-+-.+...+..+.+.++.+|+..+.=+.+..+++.+|.++.++++|.+.=+++-.+.+++.|........+
T Consensus        57 ~~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l  136 (402)
T PF02487_consen   57 KSVSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL  136 (402)
T ss_pred             CcccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH
Confidence            33335667777777888888888999999987666777788889999999999999998999999999999888777776


Q ss_pred             ccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCc--hhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCcccc
Q 008957          195 IDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW--RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  272 (547)
Q Consensus       195 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  272 (547)
                      .. .+++    ..++.++.+.+.+.++|+..-..+.+ .|+  |..+++...+.++..+..++.+|.++......+.+..
T Consensus       137 t~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~  210 (402)
T PF02487_consen  137 TH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESE  210 (402)
T ss_pred             HH-hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCC
Confidence            44 5554    35788888888888888877666655 554  7788888777766666666666553222111110000


Q ss_pred             ccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhh
Q 008957          273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  352 (547)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (547)
                      .       ..+        ++....+....+.+...+    ...++.++..+.++.  .+..+.+.+++-+....++.  
T Consensus       211 ~-------~~~--------~~~~~~~~~~~~~~~~~~----~~~~~k~~~~k~Ll~--ymiPL~lVY~aEY~InqGv~--  267 (402)
T PF02487_consen  211 D-------EAE--------DDLLESETSESKPDSSSK----LSFKEKLKRLKPLLW--YMIPLFLVYFAEYFINQGVA--  267 (402)
T ss_pred             C-------ccc--------ccccccccccccccccch----hhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchH--
Confidence            0       000        000000000000000000    111111222232222  22223333333333333332  


Q ss_pred             ccceeEeeccCch-hhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHH---HHHHhhhHHHHH
Q 008957          353 GPKAGYNIYHMSN-ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL---TAFCLSSLYGFL  427 (547)
Q Consensus       353 ~p~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  427 (547)
                       |.........+. ... .+...+.++.++++--..++  |+.+.     +++.....+-.+..+   ...+.++.|..+
T Consensus       268 -~tl~fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~l-----wils~LQ~~nl~~~~l~s~~~fipsi~ivf  339 (402)
T PF02487_consen  268 -PTLLFPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRL-----WILSLLQVINLVFLLLQSWYRFIPSIWIVF  339 (402)
T ss_pred             -HHhcCCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence             222211112222 222 34455667766666544332  23221     222222222222221   122235677777


Q ss_pred             HHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCcc
Q 008957          428 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  477 (547)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~  477 (547)
                      ++++.-|...+..+......+.++.++++|..++|... +...+|..++.
T Consensus       340 ~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vs-vsds~GI~lAg  388 (402)
T PF02487_consen  340 VLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVS-VSDSLGILLAG  388 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhhHHHHHHH
Confidence            77888888888888888888899999999999999985 44443655444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK09952 shikimate transporter; Provisional

Probab=99.20  E-value=1.1e-10  Score=116.14  Aligned_cols=151  Identities=13%  Similarity=0.060  Sum_probs=113.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc---c-ccHHHHHHHHHHhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---S-FDFWSIAICRMLVG  181 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a-~~~~~l~~~r~l~G  181 (547)
                      +.+.+++|.+......+.....+...++.+++|+++||+|||++++.+.++..++.+....   . ++.+.+++..++.|
T Consensus       275 ~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  354 (438)
T PRK09952        275 NYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLAN  354 (438)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3456678888776666666677777888999999999999999988887766555433322   2 23445555667778


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHH-HhhhhhhhhhhhhHHhhcCCC--CchhHHHHHHHHHHHHHHHHHhh
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      ++.+...+...+++.|.+|.+.|+.+.++.+ .+..+|..++|.+.+++.+..  +|+..+...++..++.++..+..
T Consensus       355 ~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        355 IAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            8888888888999999999999998888854 445588899999999987633  48888888877777666665543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.19  E-value=1.3e-10  Score=114.27  Aligned_cols=144  Identities=8%  Similarity=0.044  Sum_probs=125.1

Q ss_pred             ccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhccc
Q 008957          113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  192 (547)
Q Consensus       113 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~  192 (547)
                      +.+....|.+.+...+...++.+..|++.||+|||+.+.++.++.+++.++...++|.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556778999999999999999999999999999999999999999888888899999999999999999877766677


Q ss_pred             ccccccCCCCCcchhhhH-HHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          193 PFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      .++.+..+++.++...+. ++....+|..++++++|++.+..||+..|++.+++.++..+...+.
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~  394 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVFT  394 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            778888888888877766 6788999999999999999999999999999998887777665543

>PRK10054 putative transporter; Provisional

Probab=99.19  E-value=3.5e-11  Score=117.93  Aligned_cols=170  Identities=9%  Similarity=0.010  Sum_probs=125.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHH
Q 008957          329 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  407 (547)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  407 (547)
                      ++.++.+.+..++.....+....++|.|+++..+.+.... ...+...++.+++.++.|+++||+|||     +.+..+.
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----~~~~~~~   80 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK-----RYMLLAI   80 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----hhHHHHH
Confidence            3456677777888888888888889999988788876554 444566677888899999999999999     6666666


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhccc
Q 008957          408 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  487 (547)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  487 (547)
                      +...+..++....++.+..+++.++.+.......+.......+..+++.|+++.|+.+...+. |.+++|.+.+++.+ .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l-g~~igp~l~~~l~~-~  158 (395)
T PRK10054         81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNI-GWTVGPPLGTLLVM-Q  158 (395)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-h
Confidence            555555555555666655555555555544455555666777888889999999999888887 88999999998875 3


Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 008957          488 NNWRKTTLALTSIFFLAAG  506 (547)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~  506 (547)
                       +|+..|.+.+++.++..+
T Consensus       159 -g~~~~f~~~~~~~~i~~i  176 (395)
T PRK10054        159 -SINLPFWLAAICSAFPLV  176 (395)
T ss_pred             -ccCcHHHHHHHHHHHHHH
Confidence             477888877766555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.19  E-value=8.3e-11  Score=117.63  Aligned_cols=151  Identities=9%  Similarity=-0.074  Sum_probs=108.6

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc--CCceeh-HHHHHHHHHHHHhhhc--cccHHHHHHHHHHhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLI-GVGLSVWTFATAGCGS--SFDFWSIAICRMLVG  181 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--a~~~~~l~~~r~l~G  181 (547)
                      .+++++|.+..+.++....+.++..++.+++|+++||+  |||+.. +....+..++.++..+  ..+.+.+.+..++.|
T Consensus       279 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g  358 (452)
T PRK11273        279 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIG  358 (452)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence            34556788888999999999999999999999999999  555432 2222333333333222  345555555556666


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhh-hhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      .+..........+..|.+|+++||++.|+.+....+|.. ++|.+.+.+.++.||+..|++.++.+++.++....+.
T Consensus       359 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        359 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             HHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            544332333345677999999999999999988888765 5899999999999999999999888777766666554

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.17  E-value=6.8e-10  Score=98.54  Aligned_cols=149  Identities=11%  Similarity=0.068  Sum_probs=117.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc-------ccHHHHHHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------FDFWSIAICRM  178 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------~~~~~l~~~r~  178 (547)
                      |.+++.+|+|.+|.+.+.++-.+|..+ .++.|.+.|++|++.++.+|.+...+|..+...+       .++|.+.+..+
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~  104 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF  104 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence            899999999999999999999999987 5888999999999999999999999999876542       47889999999


Q ss_pred             HhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       179 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      +.|.+.+....++.....+.||. +||.+.|+.-...+++..+-..+...+.+.-.-+..+.+...+.++..+..++.
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence            99998887777777777788985 699999999999999987766665555544333444444433444444444443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.16  E-value=1.9e-10  Score=114.38  Aligned_cols=132  Identities=9%  Similarity=-0.019  Sum_probs=98.8

Q ss_pred             ccc-ccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHH-h---hhccccHHHHHHHHHHh
Q 008957          106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA-G---CGSSFDFWSIAICRMLV  180 (547)
Q Consensus       106 ~~i-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~---~~~a~~~~~l~~~r~l~  180 (547)
                      |.+ ++.+|.+..+.++....+.++..++.+.+|+++||+|||+.++.+.++..+..+ .   ....+++..+.+..++.
T Consensus       262 p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (434)
T PRK15075        262 PTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWL  341 (434)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            444 445799988899999999999999999999999999999988876554433221 1   11234454555556666


Q ss_pred             hhhhhhhhhcccccccccCCCCCcchhhhHHHH-hhhhhhhhhhhhHHhhcCCCCchh
Q 008957          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLNWRY  237 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~gwr~  237 (547)
                      |++.+...+....++.|.+|+++|+.++++... +..++..++|.+.+++.++.|+++
T Consensus       342 ~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~  399 (434)
T PRK15075        342 SFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA  399 (434)
T ss_pred             HHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence            777776666677889999999999999998644 444457789999999998888653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.13  E-value=3.9e-10  Score=113.26  Aligned_cols=149  Identities=10%  Similarity=-0.029  Sum_probs=107.4

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCce-------ehHHHHHHHHHHHHhhhccccHHHHHHHHHH
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-------LIGVGLSVWTFATAGCGSSFDFWSIAICRML  179 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-------~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  179 (547)
                      .+.+++|.+..+.+.+.+++.++..++.+++|+++||+|||+       .+.+..++.++..++....++.+..++.-++
T Consensus       278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l  357 (476)
T PLN00028        278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMIL  357 (476)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            346678999999999999999999999999999999998762       2333333344444455566676666666677


Q ss_pred             hhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      .+++.+...+...+++.+..| ++||...|+...+..+|..+++.+.+ ..+..+|+..|++.+++.++.+++.++..
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        358 FSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            777766666666677777654 57999999987777677666665543 22345699999999888877766665553

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.12  E-value=3.3e-11  Score=117.31  Aligned_cols=165  Identities=8%  Similarity=-0.038  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHH
Q 008957          336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  415 (547)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (547)
                      ....++...........+|.|..+................++.+++.++.|+++||+|||     +.+..+..+.....+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~~~~~~~~~~~~~~   79 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK-----KVMIGADLIRAVLVA   79 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh-----HHHHHHHHHHHHHHH
Confidence            344445555555555666666665433323333555677788889999999999999999     666666555555444


Q ss_pred             HHHHhh-----hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchh
Q 008957          416 TAFCLS-----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  490 (547)
Q Consensus       416 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~  490 (547)
                      +.....     +.+...+..++.+++.+...+....++.+..++++|+++.++.+..... |.+++|.+.+.+.+..+ |
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~g-~  157 (365)
T TIGR00900        80 VLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSL-FYIVGPGIGGLMYATLG-I  157 (365)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHhh-H
Confidence            444444     6677777777778887777788888889999999999999999877777 88999999999988765 8


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008957          491 RKTTLALTSIFFLAAGI  507 (547)
Q Consensus       491 ~~~~~~~~~~~~~~~~~  507 (547)
                      +..+++.++..++..+.
T Consensus       158 ~~~~~~~~~~~~~~~~~  174 (365)
T TIGR00900       158 KWAIWVDAVGFAISALL  174 (365)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88887766655544433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.12  E-value=3.4e-10  Score=111.80  Aligned_cols=151  Identities=15%  Similarity=0.192  Sum_probs=133.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCc--eehHHHHHHHHHHHHhhhc--------cccHHHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCGS--------SFDFWSIAI  175 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------a~~~~~l~~  175 (547)
                      ....+++|++..+...+.-+..+...+|++++|++.||+|.|  ++++++++++.+..+...+        .++-+.+++
T Consensus       306 i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~  385 (477)
T PF11700_consen  306 IYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV  385 (477)
T ss_pred             HHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH
Confidence            345668999999999999999999999999999999999999  8999988888666666555        678899999


Q ss_pred             HHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHHHHHHHHHHHHHH
Q 008957          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAF  254 (547)
Q Consensus       176 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~  254 (547)
                      .-++.|++.|..++.+.++.+|..|+++.+..+|++....-....+||++.+.+.+..| -|+.++...++.++..++.+
T Consensus       386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  386 LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999987776 88888888777766666554


Q ss_pred             hh
Q 008957          255 VI  256 (547)
Q Consensus       255 ~~  256 (547)
                      ++
T Consensus       466 ~v  467 (477)
T PF11700_consen  466 FV  467 (477)
T ss_pred             hc
Confidence            44

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.11  E-value=4.4e-10  Score=111.96  Aligned_cols=153  Identities=10%  Similarity=-0.068  Sum_probs=108.7

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHH---HHHhhhc--cccHHHHHHHHHHhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF---ATAGCGS--SFDFWSIAICRMLVG  181 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~---~~~~~~~--a~~~~~l~~~r~l~G  181 (547)
                      .+++..|.+..+.++..+.+.++..++.+.+|+++||+|+++....+..+..+   +.+....  ..+.+...+.-++.|
T Consensus       277 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  356 (438)
T TIGR00712       277 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIG  356 (438)
T ss_pred             HHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            34455788999999999999999999999999999999755433333322221   1121112  234444444445555


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhh-hhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG-VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      ++.............|.+|+++|+.+.|+.+....+| ..++|.+.|.+.++.||.+.|++.++..++..+..+++.||
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  435 (438)
T TIGR00712       357 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  435 (438)
T ss_pred             HHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5432222222345779999999999999998887776 57899999999999999999999888887777777777766

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.11  E-value=8.4e-11  Score=115.09  Aligned_cols=134  Identities=13%  Similarity=-0.004  Sum_probs=101.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCc-eehHHH-H-HHHHHHHHhhhc--cccHHHHHHHHHHh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF-RLIGVG-L-SVWTFATAGCGS--SFDFWSIAICRMLV  180 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr-~~l~~~-~-~~~~~~~~~~~~--a~~~~~l~~~r~l~  180 (547)
                      +.+.+++|.+..+.+++.+.+.++..++.++.|++.||+++| +..+.. . ....++......  ..+.+.+++..++.
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
T TIGR00881       241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFAL  320 (379)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            345567899999999999999999999999999999986443 332221 1 112222222222  34556666777778


Q ss_pred             hhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHH
Q 008957          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF  239 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f  239 (547)
                      |+......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.||++.|
T Consensus       321 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       321 GFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            87666566666778899999999999999999999999999999999999999999765

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=3.4e-09  Score=101.80  Aligned_cols=309  Identities=11%  Similarity=0.032  Sum_probs=183.9

Q ss_pred             hhHH-HHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccc
Q 008957          119 DGVL-SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDD  197 (547)
Q Consensus       119 ~g~~-~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  197 (547)
                      .|.. .++....+.+++++.+.+.|+.|.|+.++++...+....+..-+ .|-+.+++.-.+.|+|.+..+..-..+++|
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~  129 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTS  129 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhh
Confidence            3444 77888888999999999999999999999999999988877665 456788899999999999999999999999


Q ss_pred             cCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC--------CCch-hHH----------HHHHHHHHHHHHHH--Hhh
Q 008957          198 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH--------LNWR-YAF----------WGEAILMLPFAVLA--FVI  256 (547)
Q Consensus       198 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~--------~gwr-~~f----------~~~~~~~~~~~~~~--~~~  256 (547)
                      ..+++.+.+..++.-+....+.++|..+-..+..+        .+-+ +.+          .+.+++..+..+..  ...
T Consensus       130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~  209 (461)
T KOG3098|consen  130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDF  209 (461)
T ss_pred             cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheee
Confidence            99999999999999888888888876655433211        1111 111          11111111100000  001


Q ss_pred             ccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHH
Q 008957          257 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  336 (547)
Q Consensus       257 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (547)
                      .|...      ......                       ..      +        ...++..+..-.+++++....+.
T Consensus       210 ~p~~~------~~~~~~-----------------------~~------~--------~~~~~~l~~~~~l~~~~~ml~L~  246 (461)
T KOG3098|consen  210 LPSKD------VVNCKS-----------------------SS------E--------TSFSELLKLTFKLLKTPKMLLLF  246 (461)
T ss_pred             cCccc------hhhhhh-----------------------hc------c--------ccHHHHHHHHHHHhcCHhHHHHH
Confidence            11100      000000                       00      0        01111223334556777777777


Q ss_pred             HHHHHHHHHHHHHhhhccceeEee--ccCchh--hHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHH
Q 008957          337 LGYIAYNFVIGAYSYWGPKAGYNI--YHMSNA--DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  412 (547)
Q Consensus       337 ~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  412 (547)
                      ...+..++.........|..+.-.  .+.+..  ........+++.+++.+..+.+.+|..+....  +.+..+..+-..
T Consensus       247 ~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~--~~~~~~~~~~~~  324 (461)
T KOG3098|consen  247 PFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK--PTVLIGIIIHLI  324 (461)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC--cchhHHHHHHHH
Confidence            666655555555555555433322  222211  12223445566677777777777665433111  444444444333


Q ss_pred             HHHHHHHh------------------hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCC
Q 008957          413 SCLTAFCL------------------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV  474 (547)
Q Consensus       413 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~  474 (547)
                      .+++....                  ++.....++.++.|++-.......+..+.... |+.|..+.++.-.-... +..
T Consensus       325 ~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~-~s~  402 (461)
T KOG3098|consen  325 GFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSV-ASC  402 (461)
T ss_pred             HHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHH-HHH
Confidence            33333221                  12345666667777777777777777777766 77888888887544444 544


Q ss_pred             C
Q 008957          475 P  475 (547)
Q Consensus       475 ~  475 (547)
                      +
T Consensus       403 v  403 (461)
T KOG3098|consen  403 V  403 (461)
T ss_pred             H
Confidence            3

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.11  E-value=8.4e-11  Score=117.64  Aligned_cols=172  Identities=11%  Similarity=-0.052  Sum_probs=127.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhccceeEee--ccCchhhH-hhhhhhcccccccceeeeeeeec-ccccchhHHHHHHH
Q 008957          330 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSA  405 (547)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~  405 (547)
                      +.++.+.+..++..+.++++..++|.|+++.  .+.+.... .......++..++.+++|+++|| +|||     +.+..
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~-----~~l~~   84 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK-----KTMVL   84 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH-----HHHHH
Confidence            4455666667777788889999999998876  66665443 55566778889999999999999 8999     67777


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCc---chhHHHHHHHHHHHhhcCCCccchhhh
Q 008957          406 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGV  482 (547)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~g~~~~~~~~~g~~~~~~~~g~  482 (547)
                      +.++..+..++....++.+...+...+.+.+.+...+.......+.++++   .|+++.++.+...++ |.++||.+.++
T Consensus        85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ni-G~~ig~~l~g~  163 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINI-GSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHH-HHHHHHHHHHH
Confidence            76666666655555555555555555666666666677777777777764   488899999888888 99999999999


Q ss_pred             hhcccchhHHHHHHHHHHHHHHHHHH
Q 008957          483 LQDHVNNWRKTTLALTSIFFLAAGIW  508 (547)
Q Consensus       483 l~~~~~~~~~~~~~~~~~~~~~~~~~  508 (547)
                      +.+..+ |+..|.+.++..+++.+.+
T Consensus       164 l~~~~g-~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       164 IAENYG-YHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHHHHHH
Confidence            998765 8888888776555544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.10  E-value=4e-10  Score=110.64  Aligned_cols=146  Identities=12%  Similarity=-0.074  Sum_probs=113.7

Q ss_pred             cccccccccCccchhHHHHHHH-HHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc------cccHHHHHHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------SFDFWSIAICRM  178 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------a~~~~~l~~~r~  178 (547)
                      +...+|.|++++++|++..... ....++.++.|++.||+|+|+.+..+.++.++..+....      .++.+.++....
T Consensus       232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (390)
T TIGR02718       232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA  311 (390)
T ss_pred             hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence            3344568999999999988876 466778999999999999999988877666333332211      234444555566


Q ss_pred             HhhhhhhhhhhcccccccccCCC-CCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHH
Q 008957          179 LVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  251 (547)
Q Consensus       179 l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~  251 (547)
                      +.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..||+..|++.+++.++..+
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            66777777777777787777776 78999999999999999999999999999999999999988876665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.09  E-value=5.4e-10  Score=113.38  Aligned_cols=155  Identities=10%  Similarity=-0.060  Sum_probs=106.0

Q ss_pred             cccccccccCccchhH------------HHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcccc----
Q 008957          106 SGIQGDFKLNNFQDGV------------LSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD----  169 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~----  169 (547)
                      |.+.++.|.+..+.+.            ......++..++.+..++++||+|||++++++.++.+++.++.++..+    
T Consensus       312 p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~  391 (502)
T TIGR00887       312 KVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST  391 (502)
T ss_pred             HHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            6666677776543221            233445566778899999999999999999988887777665554321    


Q ss_pred             HHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC----------CCchhHH
Q 008957          170 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH----------LNWRYAF  239 (547)
Q Consensus       170 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~----------~gwr~~f  239 (547)
                      ...+.+.-+...++.....+....+.+|.+|.+.|+++.++.+....+|..+++.+.+++.+.          .++...|
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  471 (502)
T TIGR00887       392 HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVL  471 (502)
T ss_pred             hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHH
Confidence            111111111112222223455667789999999999999999999999999999999988763          3456788


Q ss_pred             HHHHHHHHHHHHHHHhhccCcc
Q 008957          240 WGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      ++.++.+++..+.. ++.||+.
T Consensus       472 ~i~~~~~~~~~i~~-~~lpEt~  492 (502)
T TIGR00887       472 EIFALFMFLGILFT-LLIPETK  492 (502)
T ss_pred             HHHHHHHHHHHHHh-eEeccCC
Confidence            88888777665544 5557743

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10504 putative transporter; Provisional

Probab=99.08  E-value=6.6e-10  Score=112.12  Aligned_cols=130  Identities=10%  Similarity=0.107  Sum_probs=109.4

Q ss_pred             ccccc-ccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc---ccHHHHHHHHHHhh
Q 008957          106 SGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVG  181 (547)
Q Consensus       106 ~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---~~~~~l~~~r~l~G  181 (547)
                      |...+ .+|.++.+.+++...+.++..++.++.|++.||+|||+++..+.++.+++.++..+.   ++.+.+.+.-++.|
T Consensus       285 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (471)
T PRK10504        285 PVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQG  364 (471)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            44433 578899999999999999999999999999999999999999998888877666543   34444556678888


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCc
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  235 (547)
                      ++.+...+....++.+..|+++|+.+.++.+....+|..+|+.+++.+.+..|+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        365 MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999888888889999999999999999999999999999999999988665444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.08  E-value=1.4e-10  Score=114.16  Aligned_cols=175  Identities=13%  Similarity=0.016  Sum_probs=120.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecc-cccchhHHHHHHH
Q 008957          328 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSA  405 (547)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~  405 (547)
                      +.+.++......+...+.++++..++|.|+++..+.+.... ...........++.+++|+++||+ |||     +.+..
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr-----r~ili   81 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR-----MAVML   81 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH-----HHHHH
Confidence            34456666667777788889999999999988777776444 444555677788899999999999 998     56666


Q ss_pred             HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhcCccceeeeecccCCc--chhHHHHHHHHHHHhhcCCCccchhhh
Q 008957          406 ATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGV  482 (547)
Q Consensus       406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~r~~~~g~~~~~~~~~g~~~~~~~~g~  482 (547)
                      +.++..+..++..... +.....+...+...+.+...+....+..+.+|++  .|.++.++.+...++ |+.++|.+.|+
T Consensus        82 G~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nl-G~~iap~l~g~  160 (493)
T PRK15462         82 GALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNV-GSIIAPIACGY  160 (493)
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHH-HHHHHHHHHHH
Confidence            5555555443332222 1122222233333444444455566778888774  799999999988887 88999999999


Q ss_pred             hhcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          483 LQDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       483 l~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      +.+..| |+..|.+.++..+++.+.+.
T Consensus       161 L~~~~G-w~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        161 AQEEYS-WAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHhhhC-hHHHHHHHHHHHHHHHHHHH
Confidence            988765 88888887665555444444

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.07  E-value=7.5e-10  Score=95.44  Aligned_cols=312  Identities=12%  Similarity=0.083  Sum_probs=177.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      -.+-+.++....++|.+.-+-.-...+...+.|.++|+-|||+.-+.-++.+.++++ .-.++.|-.++++|.+.|+..+
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTs  139 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATS  139 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHH
Confidence            446677888889999888888888888888999999999999976666665555443 4567889999999999999999


Q ss_pred             hhhhccccc-ccccCCCCCcchhhhHHH--------HhhhhhhhhhhhhHHhhcCCC--CchhHHHHHHHHHHHHHHHHH
Q 008957          186 SFISLAAPF-IDDNAPVPQKTAWLSMFY--------MCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAF  254 (547)
Q Consensus       186 ~~~~~~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~  254 (547)
                      ..+.+-.++ +.|..+  +|+.---+..        .++++=.+++.+.+..+.+.+  |--.+|-..+.+..   +...
T Consensus       140 LLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLa---igmA  214 (454)
T KOG4332|consen  140 LLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLA---IGMA  214 (454)
T ss_pred             HHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH---HHHH
Confidence            888877655 555543  3443222222        223333344444555555543  33445544332221   2222


Q ss_pred             hhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHH
Q 008957          255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (547)
Q Consensus       255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (547)
                      ..+..+.....++.+.+..                                          ..++....+.+..+.++.+
T Consensus       215 vil~~W~ENygdps~~kdl------------------------------------------ltqf~gaa~aiaSD~ki~L  252 (454)
T KOG4332|consen  215 VILSSWSENYGDPSENKDL------------------------------------------LTQFKGAARAIASDEKIAL  252 (454)
T ss_pred             HHHhhhhhccCChhhhHHH------------------------------------------HHHhhHhHHHHhcchHHHH
Confidence            2223333332222222211                                          1222234455666666555


Q ss_pred             HHHHHHHHHHH-HHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH
Q 008957          335 NVLGYIAYNFV-IGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (547)
Q Consensus       335 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  413 (547)
                      +-..-.++-.. +..+..|.|..--+..+.+ .. .+..-+.+++.+|.-+..++..|-..|..   ..+.+...+....
T Consensus       253 LG~iqsLFE~smytFVFLWTPaLspn~e~iP-hG-fiFatFMlASmLGSSla~Rl~s~s~~~ve---~ymqivf~vs~a~  327 (454)
T KOG4332|consen  253 LGAIQSLFEGSMYTFVFLWTPALSPNDEEIP-HG-FIFATFMLASMLGSSLASRLLSRSSPKVE---SYMQIVFLVSIAA  327 (454)
T ss_pred             HHHHHHHHhhhhheeeeeecccCCCCcccCC-ch-hHHHHHHHHHHHhhHHHHHHHhcCCcccc---hHHHHHHHHHHHH
Confidence            44443333333 3334456665543332222 12 22233445556666555555444333322   3333333333333


Q ss_pred             HHHHHHh-------hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHh
Q 008957          414 CLTAFCL-------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  470 (547)
Q Consensus       414 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~  470 (547)
                      ..+....       .+....++.+++.-.+.+..+|.++-.-.+.+|.+.|++.+-.+..-.++
T Consensus       328 l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni  391 (454)
T KOG4332|consen  328 LLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI  391 (454)
T ss_pred             HHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence            3332222       13444567778888888999999998888989999999877766544454

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.07  E-value=1e-09  Score=108.20  Aligned_cols=147  Identities=13%  Similarity=0.202  Sum_probs=110.1

Q ss_pred             cccccccccCccchhHHHHHHH-HHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhh---hcc-ccHHHHHHHH---
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-FDFWSIAICR---  177 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a-~~~~~l~~~r---  177 (547)
                      +.+.+++|++..+.+++.+... ++..++.+++|++.||+|+|+.+..+.++..+..+..   ++. ++.+.+++.-   
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  313 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE  313 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            4566778999999999987654 5689999999999999999998887777666554433   343 4556655554   


Q ss_pred             -HHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          178 -MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       178 -~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                       ++.|++.+...+....++.+.+|.++    .++++...++|..+++.++|.+.++.||+..|.+.++++++..++.+..
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~  389 (402)
T PRK11902        314 NLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM  389 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence             45566677777777888888887654    4556666677877777789999999999999999988887765555433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.07  E-value=5.9e-10  Score=125.33  Aligned_cols=151  Identities=17%  Similarity=0.129  Sum_probs=128.1

Q ss_pred             cccccccccCcc-chhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNF-QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      +.+.+.+|.+.. +.+++.+...++.+++.+++|++.||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.
T Consensus       257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  336 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA  336 (1146)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            445677899988 9999999999999999999999999999999999999999998888888889999999999999999


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC-CCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      +...+...+++.+..|+++||+++++.+....+|.++++.+++.+.. .+++...|++.+.+.++..+..++.
T Consensus       337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (1146)
T PRK08633        337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLL  409 (1146)
T ss_pred             HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988899999999999999999999999999999888888776653 2456667777666555544444333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.06  E-value=4.4e-10  Score=111.87  Aligned_cols=137  Identities=11%  Similarity=0.039  Sum_probs=103.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc--cHHHHHHHHHHhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVG  183 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~  183 (547)
                      |...++.|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++..++.++....+  +...+.+..+..+.+
T Consensus       255 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (426)
T PRK12307        255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMAT  334 (426)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            555566788888999999999999999999999999999999999888877766655444332  222222222222222


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHH
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGE  242 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~  242 (547)
                      .....+..+.++.|.+|+++||+++|+......+|..++|.+++++.++.|+....++.
T Consensus       335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        335 NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFI  393 (426)
T ss_pred             cccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            22233445677899999999999999999999999999999999999988876543333

>TIGR00898 2A0119 cation transport protein

Probab=99.05  E-value=1.2e-09  Score=111.38  Aligned_cols=138  Identities=12%  Similarity=-0.101  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccH--HHHHHHHHHhhhhhhhhhhccccccccc
Q 008957          121 VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVGEASFISLAAPFIDDN  198 (547)
Q Consensus       121 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~  198 (547)
                      +......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++.-++.+++.+..++....+..|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44445567778889999999999999999999999999988888776654  4555666777777777888889999999


Q ss_pred             CCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       199 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      +|++.|+.++|+.+....+|.+++|.+.+ +. ..++..++++.++..++..++.+ ++||+.
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~-~lpet~  498 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILTL-FLPETK  498 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence            99999999999999999999999999988 43 35677888888887777766654 446643

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.05  E-value=2.7e-09  Score=92.92  Aligned_cols=176  Identities=18%  Similarity=0.142  Sum_probs=128.0

Q ss_pred             CCchhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhh
Q 008957           61 FTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASL  140 (547)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l  140 (547)
                      +.+.+++.++|+++.+..+....++.                   ...++.||+|+...+.+.+....-.++.+++.|.+
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~-------------------~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i  323 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGP-------------------MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAI  323 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhH-------------------HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHh
Confidence            33445666677777666655555553                   45788999999999999999999999999999999


Q ss_pred             hhhcCCceehHHHHHHHHH-HHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhh
Q 008957          141 AKSHNPFRLIGVGLSVWTF-ATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV  219 (547)
Q Consensus       141 ~dr~Grr~~l~~~~~~~~~-~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  219 (547)
                      +||+|++...+.+..+..+ +-.+..|  +++.=+++..+.|+..+.........++-..|+++.|.+.|..+...++|.
T Consensus       324 ~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgl  401 (459)
T KOG4686|consen  324 SDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGL  401 (459)
T ss_pred             HhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhh
Confidence            9999999887776554443 4344443  344445677788887776555566677888888999999999999999999


Q ss_pred             hhhhhhHHhhcCCCC---chhHHHHHHHHHHHHHHHHHhhc
Q 008957          220 ALGYVYGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       220 ~~g~~l~~~l~~~~g---wr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      .+.|++++++.++-|   |--.|.+......+..+...+..
T Consensus       402 a~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  402 AFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             hHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            999999999987644   55555544443333344444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.05  E-value=5.6e-10  Score=110.90  Aligned_cols=152  Identities=17%  Similarity=0.187  Sum_probs=139.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcC--CceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      |...++.+.+..+.+.+.++..+...++.+..|+++|+..  ++.+..+++++.+++.+.+.++++++.++..-.+.|++
T Consensus       322 ~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~  401 (509)
T KOG2504|consen  322 PSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFC  401 (509)
T ss_pred             HHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            7788899999999999999999999999999999999988  55577788888888999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHHHHHHHHHHHHHHhhc
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      .|........++.|..+.++-..+.|+.....+++.++||++++++.+..| |...|+..++..++..+.+++..
T Consensus       402 ~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  402 VGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999998888899999999999999999999999999999999999998877 99999999988887776666554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.05  E-value=1.1e-09  Score=109.40  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=104.9

Q ss_pred             CccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHhhhhhhhhhhcccc
Q 008957          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGEASFISLAAP  193 (547)
Q Consensus       115 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-~~~~~l~~~r~l~G~~~~~~~~~~~~  193 (547)
                      +..+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667888888999999999999999999999999999998888888777665 46677788889999999999998999


Q ss_pred             cccccCC-------CCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCc
Q 008957          194 FIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (547)
Q Consensus       194 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  235 (547)
                      +++|..+       ++++|.+.++.+....+|..+++.+.+.+.+..||
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9998865       45679999999999999999999999998876666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.05  E-value=9.9e-11  Score=113.34  Aligned_cols=163  Identities=16%  Similarity=0.139  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHH
Q 008957          338 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  416 (547)
Q Consensus       338 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (547)
                      ..++............|.++.+.++.+.... .......++..++.++.|+++||+|||     +.+..+.++..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR-----RVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe-----eeEeehhhhhhhHHHH
Confidence            3444455555555666644555566555443 455667788899999999999999999     6666666666555444


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHH
Q 008957          417 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  496 (547)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  496 (547)
                      ..+.++.+..++..++.+++.+...+....++.+..++++|+++.++.+..... |.+++|.+.+.+.+..+ |+..+++
T Consensus        79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~~-~~~~~~~  156 (352)
T PF07690_consen   79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSL-GSILGPLLGGFLISYFG-WRWAFLI  156 (352)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHCH-HCCHHHH
T ss_pred             hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhh-hhhcccchhhhhhhccc-ccccccc
Confidence            433356667777778888888888888888999999999999999999877777 88999999999997654 8888888


Q ss_pred             HHHHHHHHHHH
Q 008957          497 LTSIFFLAAGI  507 (547)
Q Consensus       497 ~~~~~~~~~~~  507 (547)
                      .+++.++..++
T Consensus       157 ~~~~~~~~~il  167 (352)
T PF07690_consen  157 SAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccchhhhhhhh
Confidence            88887776553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.05  E-value=9.5e-10  Score=102.17  Aligned_cols=143  Identities=14%  Similarity=0.100  Sum_probs=126.5

Q ss_pred             ccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhh
Q 008957          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (547)
Q Consensus       109 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~  188 (547)
                      +.++|++..++.++.-...+..++|++++|+|.||+|.|+++..+++++.+.++..-+...-..+.++-.+.|.+.|..+
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q  359 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ  359 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence            45999999999999999999999999999999999999999999999999999888887777778888899999999999


Q ss_pred             hcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHHHHHHHHHHH
Q 008957          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAV  251 (547)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~  251 (547)
                      ..+.++.++.+|+++-++.+|+++...-.+..+||.+-+.+.+..| -|..+....++..+..+
T Consensus       360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~  423 (438)
T COG2270         360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL  423 (438)
T ss_pred             HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh
Confidence            9999999999999999999999999999999999999998876543 56666665544443333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.04  E-value=2.1e-09  Score=106.21  Aligned_cols=148  Identities=11%  Similarity=-0.039  Sum_probs=118.0

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc-----ccHHHHHHHHHHhhh
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGV  182 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~G~  182 (547)
                      +.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+.     .+.+.+++.-++.|+
T Consensus       242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (406)
T PRK15402        242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF  321 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            456789999999999888888999999999999999999999999988887777766543     356777888999999


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      +.+...+........ .++++||++.++++....+|..+|+.+++.+.+..+|....+..++.+++..++...+
T Consensus       322 g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK15402        322 GIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIF  394 (406)
T ss_pred             HHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            998877766555443 3457899999999999999999999999999888887776666555555554444333

>TIGR00895 2A0115 benzoate transport

Probab=99.04  E-value=2.1e-10  Score=113.17  Aligned_cols=124  Identities=15%  Similarity=0.029  Sum_probs=105.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      |.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+....+......++....++.+.+++..++.|++.+
T Consensus       274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  353 (398)
T TIGR00895       274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN  353 (398)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            66778889999999999999999999999999999999999954444443333333333335677888889999999999


Q ss_pred             hhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhh
Q 008957          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  229 (547)
                      ...+...+++.|.+|+++|++++++......+|..+||.++|++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999999999999999999875

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.04  E-value=1.4e-09  Score=108.11  Aligned_cols=148  Identities=8%  Similarity=-0.001  Sum_probs=97.5

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhh----hccccHHHHHHHHHHhhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC----GSSFDFWSIAICRMLVGV  182 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~----~~a~~~~~l~~~r~l~G~  182 (547)
                      .+.+++|.+..+.++..++..++..+++++.|+++||+|||+.++++.++.++..+..    ...++....+..-.+.++
T Consensus       269 ~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (432)
T PRK10406        269 YLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALL  348 (432)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            3556788888889999998888889999999999999999998877766544333211    112233332222222333


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhh-hhhhhhhhHHhhcCCCC-chhHHHHHHHHHHHHHHHHHh
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV  255 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~  255 (547)
                      +.+...+....+++|++|++.|+.++|+.+...++ .....|.+.+.+.. .| |...++..++..++..+..++
T Consensus       349 ~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        349 IVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence            33444445667889999999999999998866553 23347777776643 34 655666665555555554444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.03  E-value=1.6e-09  Score=106.12  Aligned_cols=145  Identities=14%  Similarity=-0.041  Sum_probs=117.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHH-HHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV-WTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      |.+.+++|.+..+.+++.+.+.++..++.++.+++.||.+ |+.++.+.++ .....++....++.+.+.+..++.|++.
T Consensus       241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~  319 (394)
T PRK10213        241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF  319 (394)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            5567788999999999999999999999999999999964 4444444444 3333444456677888888999999999


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHH
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  252 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  252 (547)
                      +...+...+++.+..| ++++++.++.....++|..+|+.++|.+.+..|++..++..++..++..+.
T Consensus       320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            9888888888988887 457788888888999999999999999999999999999887765554443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.03  E-value=1.1e-09  Score=102.94  Aligned_cols=130  Identities=11%  Similarity=0.053  Sum_probs=108.9

Q ss_pred             ccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhc
Q 008957          111 DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL  190 (547)
Q Consensus       111 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~  190 (547)
                      .+|+++.+.++..+.+..+..+|.+..+++.||+|+|+.+.++.++..++.++....++...+ .+-++.|++.+..+|.
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT  250 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999988888888887766665554333 4556889999999999


Q ss_pred             ccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHH
Q 008957          191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA  243 (547)
Q Consensus       191 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~  243 (547)
                      ..+...+..|++ .+.+.++. ....+|..++|++.|.+.+..|.+..|++..
T Consensus       251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            999998888764 55666765 5566899999999999999889999888554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.02  E-value=4.9e-10  Score=112.85  Aligned_cols=178  Identities=11%  Similarity=-0.051  Sum_probs=119.5

Q ss_pred             hhcccc-hhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeec-ccccchhHHH
Q 008957          325 VLLQEK-VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFK  401 (547)
Q Consensus       325 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~  401 (547)
                      +.+++| .++......++..+.++.+..+++.|+++..+.+.... ..............+++|++.|| +|||     +
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r-----~   89 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK-----R   89 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----H
Confidence            344555 47777778888888889999999999988888875443 22222222333334578999999 5998     6


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhcCccceeeeecccCCc--chhHHHHHHHHHHHhhcCCCccc
Q 008957          402 LLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSP  478 (547)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~r~~~~g~~~~~~~~~g~~~~~~  478 (547)
                      .+..+.++..+..++..... +.....+...+.+.+.+...+.......+.+|++  .+..+.++.+...++ |.+++|.
T Consensus        90 ~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i-G~~~gp~  168 (500)
T PRK09584         90 VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI-GSFFSML  168 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH-HHHHHHH
Confidence            66666655555544444432 3333334445556666666666667777777653  345677877777787 8899999


Q ss_pred             hhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          479 LVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       479 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      +.|++.+..| |+..|.+.++..+++.+.++
T Consensus       169 i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~~  198 (500)
T PRK09584        169 ATPWLAAKYG-WSVAFALSVVGMLITVVNFA  198 (500)
T ss_pred             HHHHHHHhhC-HHHHHHHHHHHHHHHHHHHH
Confidence            9999998865 88999887765555554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.02  E-value=1.6e-09  Score=121.47  Aligned_cols=149  Identities=11%  Similarity=0.065  Sum_probs=124.0

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc-------------------
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------------------  167 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------------------  167 (547)
                      .+.+.+|.+..+.|++.+++.+|.+++.++.|+++|++++++.+..+.++.+++.+..++.                   
T Consensus       251 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  330 (1140)
T PRK06814        251 LAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLS  330 (1140)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhc
Confidence            3455689999999999999999999999999999999888887777777766666544443                   


Q ss_pred             -ccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhc-CCCCchhHHHHHHHH
Q 008957          168 -FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAIL  245 (547)
Q Consensus       168 -~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~gwr~~f~~~~~~  245 (547)
                       ++.+.++++-++.|++.+...+...+++.+.+|++.||+++|+.+....+|..+++++++.+. ...++...|++.++.
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence             678888899999999999999999999999999999999999999999999999999998886 345677777777665


Q ss_pred             HHHHHHHHHh
Q 008957          246 MLPFAVLAFV  255 (547)
Q Consensus       246 ~~~~~~~~~~  255 (547)
                      .++..++.+.
T Consensus       411 ~~~~~~~~~~  420 (1140)
T PRK06814        411 NLIVAILILR  420 (1140)
T ss_pred             HHHHHHHHHH
Confidence            5555444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.02  E-value=1.9e-09  Score=105.41  Aligned_cols=150  Identities=12%  Similarity=0.030  Sum_probs=112.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhh-ccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-SSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~a~~~~~l~~~r~l~G~~~  184 (547)
                      |.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.. +.++.+..++..++.+++.
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~  303 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGL  303 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            456666899999999999999999999999999999999999999999888888776554 3556666666677777665


Q ss_pred             hhhhhcccc-cccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCC-CCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          185 ASFISLAAP-FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       185 ~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      ....+.... ...+..+++.++..  ..+....+|..+||.++|++.+. .+|++.+.+.++.+++.......+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        304 FALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             HhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence            544443333 34444444444443  34667889999999999998874 6899999998877766555555444

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.01  E-value=3.9e-09  Score=102.43  Aligned_cols=156  Identities=11%  Similarity=-0.063  Sum_probs=126.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc---cHH------HHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFW------SIAIC  176 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~---~~~------~l~~~  176 (547)
                      ..+-++-|++..+..++.....+...+..+.+..+.||+|||+.++++..+..+..++...+.   +..      ..+++
T Consensus       294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~  373 (485)
T KOG0569|consen  294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA  373 (485)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            667788899999999999999999999999999999999999999999999988887766431   111      12233


Q ss_pred             HHHhhhhhhh-hhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHh
Q 008957          177 RMLVGVGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (547)
Q Consensus       177 r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  255 (547)
                      .++..++.+. ..|...-+.+|.+|++.|..++++......++..+-...-..+.+..|= +.|++..+++++..+..++
T Consensus       374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~  452 (485)
T KOG0569|consen  374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR  452 (485)
T ss_pred             HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence            3333333332 4577888999999999999999999999988888777777777776665 8999999999999999999


Q ss_pred             hccCccC
Q 008957          256 IKPLQLK  262 (547)
Q Consensus       256 ~~p~~~~  262 (547)
                      .+||++.
T Consensus       453 ~lPETkg  459 (485)
T KOG0569|consen  453 YLPETKG  459 (485)
T ss_pred             hCcccCC
Confidence            9999654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.01  E-value=5e-10  Score=112.10  Aligned_cols=174  Identities=13%  Similarity=0.010  Sum_probs=123.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeec-ccccchhHHHHHHHH
Q 008957          329 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAA  406 (547)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~  406 (547)
                      .+.++......++..+.++++..+++.|+++..+.+.... ...........+..+++|+++|| +|||     +.+..+
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r-----~~~~~g   87 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK-----RTIVLG   87 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH-----HHHHHH
Confidence            3456666677777788888898889999888777775443 33333444455556789999999 9999     777777


Q ss_pred             HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhcCccceeeeecccCCc--chhHHHHHHHHHHHhhcCCCccchhhhh
Q 008957          407 TFLGAISCLTAFCLSS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGVL  483 (547)
Q Consensus       407 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~r~~~~g~~~~~~~~~g~~~~~~~~g~l  483 (547)
                      .++..+..++.....+ .....+...+.+.+.+...+.....+.+.+|++  +|+.+.++.....++ |.++||.+.|++
T Consensus        88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ni-g~~~g~~l~g~l  166 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINI-GSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHH-HHHHHHHHHHHH
Confidence            7766666555554433 222334455566666777777788888888875  457788888888888 889999999999


Q ss_pred             hcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          484 QDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      .++.| |++.|++.++..+++.+.+.
T Consensus       167 ~~~~g-w~~~F~i~~i~~~~~~~~~~  191 (489)
T PRK10207        167 ADKFG-YSVTYNLCGAGLIIALLVYF  191 (489)
T ss_pred             HHhhC-hHHHHHHHHHHHHHHHHHHH
Confidence            99875 88888886554444444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.00  E-value=1.7e-09  Score=106.29  Aligned_cols=147  Identities=12%  Similarity=0.022  Sum_probs=117.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh-cCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      |...++.+.++.+.+++.+...++...+..+.+++.|| ++.++.+..+.++.+++.++.+++++++.+.+..++.|++.
T Consensus       232 p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~  311 (400)
T PRK11646        232 PIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGS  311 (400)
T ss_pred             hhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            55555554477888999888888777777677777764 66677778888888888888888888888888888999999


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC---C-chhHHHHHHHHHHHHHHH
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---N-WRYAFWGEAILMLPFAVL  252 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~---g-wr~~f~~~~~~~~~~~~~  252 (547)
                      +...|...+++.+..|+++||+++++++....+|..+||.++|++.++.   + -...+++.++.+++..+.
T Consensus       312 ~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        312 IIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999999999999998653   3 245666655555554444

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.00  E-value=5.3e-10  Score=109.71  Aligned_cols=155  Identities=15%  Similarity=0.069  Sum_probs=113.8

Q ss_pred             HHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008957          346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  424 (547)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (547)
                      ........|.+.++ .+.+.... .......++..++.++.|++.||+|||     +.+..+..+..+..++....++.+
T Consensus        21 ~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~   94 (385)
T TIGR00710        21 IDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR-----PVLLLGLFIFALSSLGLALSNNIE   94 (385)
T ss_pred             HHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHccHH
Confidence            33334445554444 55554333 555667788899999999999999999     677666666666666666667777


Q ss_pred             HHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHH
Q 008957          425 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  504 (547)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  504 (547)
                      ...+..++.+++.+...+....+..+..|++.|+++.++.+..... |..++|.+.+.+.+..+ |+..+++.+.+.++.
T Consensus        95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~  172 (385)
T TIGR00710        95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLAL-APAVAPLLGGYILVWLS-WHAIFAFLSLAGILL  172 (385)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence            7777777777777777777788888888889999999999877776 88889999999888754 888887777665554


Q ss_pred             HHHH
Q 008957          505 AGIW  508 (547)
Q Consensus       505 ~~~~  508 (547)
                      .+..
T Consensus       173 ~~~~  176 (385)
T TIGR00710       173 SALI  176 (385)
T ss_pred             HHHH
Confidence            4443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.97  E-value=6e-08  Score=94.70  Aligned_cols=253  Identities=13%  Similarity=0.056  Sum_probs=152.5

Q ss_pred             cccccccccC-----ccchhHHHHHHHHHHhhh-hhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc----c-------
Q 008957          106 SGIQGDFKLN-----NFQDGVLSSAFMVGLLVA-SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----F-------  168 (547)
Q Consensus       106 ~~i~~~~~~s-----~~~~g~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----~-------  168 (547)
                      -++++.+.++     ...+.++-+...+..++. .++.+++++|++|++++-+....+....+++++.    +       
T Consensus        27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~  106 (472)
T TIGR00769        27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA  106 (472)
T ss_pred             HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence            5567777663     357888888887777776 8999999999999999988887777777666654    1       


Q ss_pred             --------------------cHHHHHHHHHHhhhhhhhhhh-cccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHH
Q 008957          169 --------------------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG  227 (547)
Q Consensus       169 --------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~  227 (547)
                                          +.|...+.-+...+......+ .-..+++|.++.+|-.|..+++..+.++|.++++.+..
T Consensus       107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~  186 (472)
T TIGR00769       107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK  186 (472)
T ss_pred             HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                123333344444555555554 67788999999999999999999999999999998888


Q ss_pred             hhcC-------C-CCch----hHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccccccc
Q 008957          228 VVGS-------H-LNWR----YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI  295 (547)
Q Consensus       228 ~l~~-------~-~gwr----~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (547)
                      ++.+       . -.|.    +.+.+.++.+++. +...+.+.+....  +++... .                   +  
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~~~~l~~~~~~--~~~~~~-~-------------------~--  241 (472)
T TIGR00769       187 YFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAI-ILLYWWVNRNVLT--DPRSYN-P-------------------A--  241 (472)
T ss_pred             HHHHhhhccccccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccC--Cccccc-h-------------------h--
Confidence            8762       1 1242    2334444333333 3333333221110  110000 0                   0  


Q ss_pred             ccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchh-hH---hhh
Q 008957          296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DM---MFG  371 (547)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~---~~~  371 (547)
                      +     +++++       +...+..++++.++++|.++.+.+...+++...+.+..-.-....+.+..+.. +.   .+.
T Consensus       242 ~-----~~~k~-------k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~  309 (472)
T TIGR00769       242 L-----KEKKV-------KPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFS  309 (472)
T ss_pred             h-----ccccC-------CCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            0     00000       11224557889999999999888888887776666554222233333322211 11   122


Q ss_pred             hhhcccccccceeeeeeeeccccc
Q 008957          372 GVTIVCGIVGTISGGFILDQMGAT  395 (547)
Q Consensus       372 ~~~~~~~~~~~~~~g~l~d~~~~~  395 (547)
                      ...++..++..++.+++.+|+|-+
T Consensus       310 ~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       310 TWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHH
Confidence            333344444555557888888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.97  E-value=1.9e-09  Score=102.39  Aligned_cols=148  Identities=13%  Similarity=0.142  Sum_probs=130.9

Q ss_pred             cccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcc
Q 008957          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLA  191 (547)
Q Consensus       112 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~  191 (547)
                      -+.++...|.+.+...+.-++...+..++.+|+|.|+.++++.++.++=.+++++++|.+.+.+.+.+.|+-.+......
T Consensus       254 ~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~  333 (412)
T PF01306_consen  254 AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAA  333 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            34455678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCcchhhhH-HHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          192 APFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       192 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      ..++++.+|+|-.++...+ .+.+.++|..+.+.++|.+.++.|.+..|++.+.+.++..++.++.+++
T Consensus       334 fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  334 FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence            9999999999877777766 4788889999999999999999999999999999999888888888855

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.96  E-value=8.5e-10  Score=108.79  Aligned_cols=167  Identities=10%  Similarity=0.033  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHH
Q 008957          333 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  411 (547)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  411 (547)
                      ....+.+++.......+.+..| .+++.++.+.... ...+...++..++.++.|++.||+|||     +.+..+.++..
T Consensus        11 ~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r-----~~~~~~~~~~~   84 (412)
T TIGR02332        11 IFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR-----RWIAGIMVLWG   84 (412)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH-----HHHHHHHHHHH
Confidence            3334444444444555555666 4555667776554 555677788889999999999999999     67777776666


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcc-----
Q 008957          412 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH-----  486 (547)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~-----  486 (547)
                      +..++....++.+...+.-++.+++.+...+....++.+.+|+++|+++.++.+..... |.++++.+.+++.+.     
T Consensus        85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPV-TMALGLILSGYILALDGLMA  163 (412)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCC
Confidence            66666666677777777777788888777776667778888889999999999877676 888899888888642     


Q ss_pred             cchhHHHHHHHHHHHHHHHH
Q 008957          487 VNNWRKTTLALTSIFFLAAG  506 (547)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~  506 (547)
                      ..+|+..|++.++..++..+
T Consensus       164 ~~gwr~~f~~~~~~~l~~~~  183 (412)
T TIGR02332       164 LKGWQWLFLLEGFPSVILGV  183 (412)
T ss_pred             ccchhHHHHHHHHHHHHHHH
Confidence            12599999887766554433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.96  E-value=2.8e-09  Score=96.50  Aligned_cols=132  Identities=6%  Similarity=-0.030  Sum_probs=101.5

Q ss_pred             HHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcc
Q 008957          126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT  205 (547)
Q Consensus       126 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~  205 (547)
                      ..+.-.-|.++.+.+.||+|||+++..+.++++++.++.....+-..+.+.-+..-++.++.+.+.+.|..|.+|.+-|+
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            34556678999999999999999999999999999988776654433333333333444556678999999999999999


Q ss_pred             hhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          206 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       206 ~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      ...|.-+.+.-+|.++.|+++  +.....-..+..+.+..+++..+...+++-|
T Consensus       470 tgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence            999999999999999999999  3222334466667777777777777777544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.96  E-value=8.2e-10  Score=108.56  Aligned_cols=166  Identities=14%  Similarity=0.046  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH
Q 008957          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (547)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  413 (547)
                      .....+............+|.+.++ .+.+.... .......++..++.++.|+++||+|||     +.+..+..+..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----~~l~~~~~~~~i~   81 (392)
T PRK10473          8 SFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK-----PVAIPGAALFIIA   81 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh-----HHHHHHHHHHHHH
Confidence            3333444444445555667766655 45554333 445566778888899999999999998     6666666666666


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHH
Q 008957          414 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  493 (547)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  493 (547)
                      .++....++.+...+..++.+.+.+...+.....+.+..++++|+++.+..+..... +..++|.+.+.+.+..+ |+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~i~~~l~~~~g-~~~~  159 (392)
T PRK10473         82 SLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCI-IPVLAPVLGHLIMLKFP-WQSL  159 (392)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcC-hHHH
Confidence            555555566665555556666666666666777788888889999999999877666 77888988888877654 8888


Q ss_pred             HHHHHHHHHHHHHHH
Q 008957          494 TLALTSIFFLAAGIW  508 (547)
Q Consensus       494 ~~~~~~~~~~~~~~~  508 (547)
                      +++.+++.++..++.
T Consensus       160 ~~~~~~~~~i~~~~~  174 (392)
T PRK10473        160 FYTMAAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888776655554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.94  E-value=8.9e-10  Score=111.44  Aligned_cols=168  Identities=15%  Similarity=0.125  Sum_probs=123.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhh-HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHH
Q 008957          332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  410 (547)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  410 (547)
                      +...++..+....-...+...+|.+..+ ++.+... ......+.++...+.++.|+++||+|||     +.+..+..+.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----~~l~~~~~~~   81 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK-----RLLMLGGTLF   81 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHH
Confidence            3444555666666666777778888765 4554333 3444556677777888999999999999     7777777777


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeeccc-CCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccch
Q 008957          411 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV-KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  489 (547)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~  489 (547)
                      .+..++....++.+..++.-.+.+++.+...+.....+.+.+ ++++|+++.|+....... |..+||.+.|++.++.+ 
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~-g~~~gp~lgg~l~~~~g-  159 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG-GAAFGPLVGGILLEHFY-  159 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCC-
Confidence            777777777778887777777777777766665555555655 568999999999777766 88999999999999865 


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 008957          490 WRKTTLALTSIFFLAAGI  507 (547)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~  507 (547)
                      |++.|++...+.++..++
T Consensus       160 wr~~f~i~~~~~~~~~~l  177 (495)
T PRK14995        160 WGSVFLINVPIVLVVMGL  177 (495)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999988877665554443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.93  E-value=3.4e-09  Score=102.70  Aligned_cols=154  Identities=17%  Similarity=0.130  Sum_probs=124.6

Q ss_pred             cccccccc-cCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc-ccHHHHHH----HHHH
Q 008957          106 SGIQGDFK-LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAI----CRML  179 (547)
Q Consensus       106 ~~i~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-~~~~~l~~----~r~l  179 (547)
                      +...+|.| .+....+.+.+...+.-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+    ...+
T Consensus       231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~l  310 (400)
T PF03825_consen  231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLL  310 (400)
T ss_pred             HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhh
Confidence            33455666 677777888888888888999999999999999999999999999988888877 55444333    3567


Q ss_pred             hhhhhhhhhhcccccccccCCCCCcchhhhHHHHh-hhhhhhhhhhhHHhhcCCCC------chhHHHHHHHHHHHHHHH
Q 008957          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC-IPTGVALGYVYGGVVGSHLN------WRYAFWGEAILMLPFAVL  252 (547)
Q Consensus       180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~g~~l~~~l~~~~g------wr~~f~~~~~~~~~~~~~  252 (547)
                      +|+..+..+..+..++.+..|++.|+++.++++.. .++|..+|..++|++.+++|      |...+.+.+.+.++..++
T Consensus       311 hG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~  390 (400)
T PF03825_consen  311 HGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL  390 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998874 68999999999999998765      445566666666666666


Q ss_pred             HHhhccC
Q 008957          253 AFVIKPL  259 (547)
Q Consensus       253 ~~~~~p~  259 (547)
                      .+++.+|
T Consensus       391 f~~~fk~  397 (400)
T PF03825_consen  391 FVILFKP  397 (400)
T ss_pred             HHhhccC
Confidence            6555543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.93  E-value=9.4e-10  Score=111.60  Aligned_cols=167  Identities=14%  Similarity=0.092  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhccceeEeeccCchhh-HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHH
Q 008957          334 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  412 (547)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  412 (547)
                      ...+..+.............|.+.++ .+.+... ........++..++.++.|++.||+|||     +.+..+.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~   79 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR-----RLFLISTFAFTL   79 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----HHHHHHHHHHHH
Confidence            34444555555556666677777665 4544433 3555677788899999999999999999     677777766666


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHH
Q 008957          413 SCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  492 (547)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  492 (547)
                      ..++....++.+..++..++.+++.+...+....++.+.+|++.|+++.++....... |..++|.+.+++.++.+ |++
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-w~~  157 (485)
T TIGR00711        80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLV-APALGPTLGGWIIENYH-WRW  157 (485)
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HhhhhhccHhHhccCcC-cee
Confidence            6666666677777777777888887777777888888989999999999998766666 88999999999998765 888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008957          493 TTLALTSIFFLAAGIW  508 (547)
Q Consensus       493 ~~~~~~~~~~~~~~~~  508 (547)
                      .|++.+.+.++..++.
T Consensus       158 ~f~~~~~~~~~~~~~~  173 (485)
T TIGR00711       158 IFLINVPIGIIVVVVA  173 (485)
T ss_pred             hhhhhhHHHHHHHHHH
Confidence            8887776655544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.93  E-value=3.3e-09  Score=106.80  Aligned_cols=150  Identities=15%  Similarity=0.027  Sum_probs=104.5

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehH--------HHHHHH--HHHHHhhhc-cccHHHHHH
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG--------VGLSVW--TFATAGCGS-SFDFWSIAI  175 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~--------~~~~~~--~~~~~~~~~-a~~~~~l~~  175 (547)
                      .+.+.+|.+..+.+++.++..++..++.++.|+++||+++|+...        .+....  ++..+.... ..+....++
T Consensus       287 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (465)
T TIGR00894       287 FISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTII  366 (465)
T ss_pred             HHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            356678999999999999999999999999999999987654321        111111  111111122 334444455


Q ss_pred             HHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC---CchhHHHHHHHHHHHHHHH
Q 008957          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVL  252 (547)
Q Consensus       176 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~---gwr~~f~~~~~~~~~~~~~  252 (547)
                      +-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.+.+..   +|+..|++.++..++..++
T Consensus       367 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~  445 (465)
T TIGR00894       367 ILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF  445 (465)
T ss_pred             HHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            55555655555555555555677665 7999999999999999999999999887643   4899999998877776665


Q ss_pred             HHhhc
Q 008957          253 AFVIK  257 (547)
Q Consensus       253 ~~~~~  257 (547)
                      ..+..
T Consensus       446 ~~~~~  450 (465)
T TIGR00894       446 YLIFG  450 (465)
T ss_pred             eeeee
Confidence            55443

>TIGR00896 CynX cyanate transporter

Probab=98.92  E-value=2.4e-09  Score=103.66  Aligned_cols=128  Identities=16%  Similarity=0.102  Sum_probs=104.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc-CCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      |.+.++.|.+..+.+.+.+.+.++..++.++.|++.||+ +||+.+.++.++.+++.++..+.++.+... .-++.|++.
T Consensus       221 p~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~  299 (355)
T TIGR00896       221 PAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQ  299 (355)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhh
Confidence            555667899999999999999999999999999999999 566677788888888877777665543332 456789999


Q ss_pred             hhhhhcccccccccCC-CCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC
Q 008957          185 ASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  234 (547)
                      +...+...+.+.+..+ +++++...++.+....+|..++|.+.|++.++.|
T Consensus       300 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       300 GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9888887777765554 5667888999888888999999999999987765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.91  E-value=2.1e-09  Score=104.69  Aligned_cols=158  Identities=16%  Similarity=0.093  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHH
Q 008957          332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  410 (547)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  410 (547)
                      ++...+..+........+..+.|.++++.++.+.... .......++..++.++.|++.||+|||     +.+..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~   77 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR-----YTTTLSLLLL   77 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHH
Confidence            4555666666666677777888876777788876554 555677788999999999999999999     6666666666


Q ss_pred             HHHHHHHHHhh-hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcc---
Q 008957          411 AISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH---  486 (547)
Q Consensus       411 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~---  486 (547)
                      .+..++....+ +.+..++..++.+++.+ .+.+....+.+..++++|+++.++.....+. |..+++.+.+.+...   
T Consensus        78 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~  155 (366)
T TIGR00886        78 AIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNM-GGGVAQFVMPPIIGSLIF  155 (366)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHh
Confidence            66666655556 66666666666665533 3455666777888889999999998755555 666666666555432   


Q ss_pred             ------cchhHHHHHH
Q 008957          487 ------VNNWRKTTLA  496 (547)
Q Consensus       487 ------~~~~~~~~~~  496 (547)
                            ..+|++.+++
T Consensus       156 ~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       156 GAGLPAHLAWGWAFVI  171 (366)
T ss_pred             cccccccccccchhHH
Confidence                  1247777733

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.90  E-value=1.2e-08  Score=100.00  Aligned_cols=148  Identities=11%  Similarity=0.047  Sum_probs=116.6

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~  186 (547)
                      .+++.+|.++.+.|++.+.+.++..++++..+++.||+++|+++..+. +.++..++.++.++++..++.-++.|++.+.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~  309 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGF  309 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence            355678999999999999999999999999999999999999888875 4445555556677888778888899999998


Q ss_pred             hhhcccccccccCCCCC-cchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          187 FISLAAPFIDDNAPVPQ-KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       187 ~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      ..+...+.+.+..|++. +|++.++.+...++|..++..+.+.+ ..+|-|..+++.+...++...+.+.+
T Consensus       310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888766654 79999999999999999999988866 45666666666544444444444333

>PRK11043 putative transporter; Provisional

Probab=98.90  E-value=2.5e-09  Score=105.45  Aligned_cols=157  Identities=16%  Similarity=0.063  Sum_probs=106.5

Q ss_pred             HHHHHhhhccce--eEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008957          345 VIGAYSYWGPKA--GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  421 (547)
Q Consensus       345 ~~~~~~~~~p~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (547)
                      .+.....+.|.+  +.+..+.+.... ...++..++..++.++.|+++||+|||     +.+..+..+..+..++....+
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK-----PVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc-----HHHHHHHHHHHHHHHHHHHhc
Confidence            333444455544  334456665443 455677788899999999999999999     666666666555555555556


Q ss_pred             hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHH
Q 008957          422 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  501 (547)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  501 (547)
                      +.+...+..++.+++.+...+.......+.++++.++...+..+..... +..++|.+.+++.+..+ |+..+++.+.+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~  170 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVAL-SPALAPLLGAWLLNHFG-WQAIFATLFAIT  170 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Confidence            6666665556655555444444455667778888888888887666665 77889999999988765 888888777666


Q ss_pred             HHHHHHH
Q 008957          502 FLAAGIW  508 (547)
Q Consensus       502 ~~~~~~~  508 (547)
                      ++..+..
T Consensus       171 ~~~~~~~  177 (401)
T PRK11043        171 LLLILPT  177 (401)
T ss_pred             HHHHHHH
Confidence            5544433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.89  E-value=1.1e-08  Score=95.21  Aligned_cols=147  Identities=16%  Similarity=0.046  Sum_probs=121.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc-------cHHH----HH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-------DFWS----IA  174 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-------~~~~----l~  174 (547)
                      ..++++|++++.+.|.....+.+...+..+.+|+++||+|.+|++.+....++++..+..+.+       +...    ++
T Consensus       243 ~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  322 (417)
T COG2223         243 MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFL  322 (417)
T ss_pred             HHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999998888877653       3443    44


Q ss_pred             HHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHHHHHHHHHHHHH
Q 008957          175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLA  253 (547)
Q Consensus       175 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~  253 (547)
                      ...++.|+|.|    ....++..++|+ +-|.+.|+.....++|...-|..-+...+..| +...|++.....+++.+..
T Consensus       323 ~l~~~~G~GnG----svfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~  397 (417)
T COG2223         323 ALFVFAGLGNG----SVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT  397 (417)
T ss_pred             HHHHHhccCcc----hheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            45555566555    566778888776 58999999999999999888888777776666 9999999998888888877


Q ss_pred             Hhhc
Q 008957          254 FVIK  257 (547)
Q Consensus       254 ~~~~  257 (547)
                      +...
T Consensus       398 ~~~y  401 (417)
T COG2223         398 WALY  401 (417)
T ss_pred             HHHH
Confidence            7665

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.88  E-value=4.6e-10  Score=105.13  Aligned_cols=151  Identities=11%  Similarity=0.094  Sum_probs=125.0

Q ss_pred             ccCchh-hHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 008957          361 YHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA  439 (547)
Q Consensus       361 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (547)
                      ++.++. ..++.....+...+..+++|++.||+.|+     .++..+..+-....+...+....|...++=.+.|.+-+.
T Consensus        63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~-----~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs  137 (493)
T KOG1330|consen   63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK-----RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEAS  137 (493)
T ss_pred             cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc-----eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            444443 33566777888899999999999999999     677777777777766666667788888888899999999


Q ss_pred             cCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008957          440 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSI  517 (547)
Q Consensus       440 ~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (547)
                      ..+..+.++.+.++.+.|++++++++..... |..+|-.+...+.+..+.|+++|...+++.++..++.++....|+|
T Consensus       138 ~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv-GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  138 YSPIAPSLIADSFPDDKRSRVLGIFYFAIPV-GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             hcccchhHhhhcCcchhhhHHHHHhhhhccc-ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            9999999999999999999999999998888 9898888888888888889999999999988887777765544444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.85  E-value=9e-08  Score=92.37  Aligned_cols=332  Identities=13%  Similarity=0.110  Sum_probs=177.7

Q ss_pred             hhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc------c--c----c---HHHHHHHHHHhhh-
Q 008957          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------S--F----D---FWSIAICRMLVGV-  182 (547)
Q Consensus       119 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------a--~----~---~~~l~~~r~l~G~-  182 (547)
                      .+...-.-.+...++++..|.+.||..|.+++..+.+..-++..+++.      .  +    +   +..+++.-.+.|. 
T Consensus        40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i  119 (432)
T PF06963_consen   40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI  119 (432)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence            344444556677788899999999999999887776554333332221      1  1    1   1222222222232 


Q ss_pred             hhhhhhhcccccccccCC------CCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          183 GEASFISLAAPFIDDNAP------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      ..=.......++=.||..      ++.+.+..+...-.=-+.-+++|++.|.+.+..+.+....+.++..++..++-+++
T Consensus       120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            221222233344456643      23344455555555557789999999999998899999888888888877766665


Q ss_pred             ccCc----cCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchh
Q 008957          257 KPLQ----LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY  332 (547)
Q Consensus       257 ~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (547)
                      +...    +.-..++++.+....++               ++   ....+.......+...+..++...+++..++.+.+
T Consensus       200 l~~VY~~~P~L~~~~~~~~~~~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vf  261 (432)
T PF06963_consen  200 LARVYNSVPALAVKKRSSESESSSD---------------EE---SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVF  261 (432)
T ss_pred             HHHHHHhChHhcCCCCCcccccccc---------------cc---ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHH
Confidence            5221    11111111100000000               00   00000011111112223344455667777887766


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHH
Q 008957          333 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  411 (547)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  411 (547)
                      ..... ..+.++..-++...+..|+.+. +.++... .+-.+..+.++.|.++..++.+|+|..+...  .-+..-..+.
T Consensus       262 las~a-lalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~--~~l~~q~~~L  337 (432)
T PF06963_consen  262 LASFA-LALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGL--WSLWWQWVCL  337 (432)
T ss_pred             HHHHH-HHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH--HHHHHHHHHH
Confidence            65444 3333333444455555566665 5554333 3345666778889999999999999764321  1122222222


Q ss_pred             HHHHHHHHhh-------hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhc
Q 008957          412 ISCLTAFCLS-------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  472 (547)
Q Consensus       412 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g  472 (547)
                      ..+...++.+       +...++..+.+.-++.-+.--....+++|.+|+++||+..|+-+...+.+.
T Consensus       338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~  405 (432)
T PF06963_consen  338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFE  405 (432)
T ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHH
Confidence            2332222222       122222333333333333444456678888999999999999988887744

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.84  E-value=2.9e-09  Score=97.04  Aligned_cols=143  Identities=15%  Similarity=0.142  Sum_probs=100.3

Q ss_pred             hHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCcccee
Q 008957          367 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  446 (547)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (547)
                      +..+.+.+.++..+..+..|.++||+|||     .++.++.+..++..++.....+. ..++..=+.+....+-.....+
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRk-----pvll~c~~~va~s~ll~~~S~~F-~afv~aR~l~Gi~kgnl~v~rA  143 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRK-----PVLLACLIGVALSYLLWALSRNF-AAFVLARFLGGIFKGNLSVIRA  143 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCch-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhccCchHHHHH
Confidence            34566778899999999999999999999     78877777777766666666666 3333322333344455667888


Q ss_pred             eeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc---ccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008957          447 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD---HVNNWRKTTLALTSIFFLAAGIWFVGIFLKS  516 (547)
Q Consensus       447 ~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (547)
                      +++|.+++++|+.+++..++..++ |.++||.++|++..   ..|.|..++-...++.+...-......++||
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~l-GfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpE  215 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGL-GFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPE  215 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhc-chhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999999888777 99999999999987   5565544332333333332213333335555

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.84  E-value=3.1e-09  Score=103.93  Aligned_cols=149  Identities=15%  Similarity=0.147  Sum_probs=110.8

Q ss_pred             hhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008957          351 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL  429 (547)
Q Consensus       351 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (547)
                      ..+|.+.++ ++.+.... .......++..++.++.|++.||+|||     +.+..+.++..+..++....++.+...+.
T Consensus        12 p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (377)
T PRK11102         12 PALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK-----PVILGGTLVFALAAVACALAQTIDQLIYM   85 (377)
T ss_pred             ccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh-----HHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            444555554 55664443 445667788889999999999999998     67777776666666666666666767777


Q ss_pred             HHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 008957          430 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  507 (547)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  507 (547)
                      .++.+++.+...+.......+..++++|+++.++.+..... |..++|.+.+.+.+..+ |+..+++.+.+.++..++
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  161 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTI-APLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHH
Confidence            77777777766677777888888889999999999777666 88889999999988765 878887777665554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.83  E-value=5.6e-09  Score=101.80  Aligned_cols=146  Identities=10%  Similarity=0.032  Sum_probs=97.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHH
Q 008957          330 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  408 (547)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  408 (547)
                      +.++...+........-+.+....+.+.+..++.+..+. .+.+++.++..++++..|++.||+|.|     +++..+.+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R-----~v~~~~~l  108 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR-----RWTVFSTA  108 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHH
Confidence            455555555444444444444445555554577776555 455677788888889999999999999     66666666


Q ss_pred             HHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhh
Q 008957          409 LGAISCLTAFCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  482 (547)
Q Consensus       409 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~  482 (547)
                      +..+..++....     ++.+.++++-++.+++ +..+++....+.+.+|+++||++.|+.....+. |..+++.+.+.
T Consensus       109 l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~-G~~l~~~l~p~  185 (462)
T PRK15034        109 ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNL-GVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence            555555554443     5666777777777775 556677777788888889999999998544444 55544444433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.82  E-value=8.4e-09  Score=101.50  Aligned_cols=147  Identities=11%  Similarity=0.025  Sum_probs=98.9

Q ss_pred             hhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008957          351 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL  429 (547)
Q Consensus       351 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (547)
                      ...|.+.+ ..+.++... .......++..++.++.|+++||+|||     +.+..+..+..+..+.....++.+..++.
T Consensus        29 p~~~~i~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  102 (394)
T PRK11652         29 PAIADMAR-DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR-----PVILVGMSIFILGTLVALFAHSLTVLIAA  102 (394)
T ss_pred             ccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            34454444 355555443 455667788899999999999999999     66666655555555555555666666666


Q ss_pred             HHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHH
Q 008957          430 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  505 (547)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  505 (547)
                      ..+.+++.+...+.......+..+++.++.+.+..+..... +..++|.+.+.+.+..+ |+..+.+.++..++..
T Consensus       103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~~~~~  176 (394)
T PRK11652        103 SAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILV-SPLLAPLIGGLLTTLFG-WRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence            56666555544343444455666678889998888665555 77889999999888755 8888887766554433

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.81  E-value=2.5e-08  Score=89.61  Aligned_cols=371  Identities=12%  Similarity=0.018  Sum_probs=221.7

Q ss_pred             cccc-cccccCccchh-HHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhh
Q 008957          106 SGIQ-GDFKLNNFQDG-VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (547)
Q Consensus       106 ~~i~-~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  183 (547)
                      |.+. .+-|+|..++. -+.-...-.+.+.-++.=.+.|..-.|+++++-.+.......+.-+.++.+.+=+.-++-|..
T Consensus        29 pyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~  108 (433)
T KOG3810|consen   29 PYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPA  108 (433)
T ss_pred             hhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChH
Confidence            4443 45567666542 333344455566667777799999999999999888888999999999999999999999998


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC--CchhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      .+ ...+-++++-+..+|+++.++.+...+..-.|..+|..++..+++..  +++..-.+.-.. ..++.+..+++|..+
T Consensus       109 tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~-~~ia~~~A~fLP~v~  186 (433)
T KOG3810|consen  109 TA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAE-VTIAVLLALFLPRVK  186 (433)
T ss_pred             HH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHH-HHHHHHHHhhCCCCc
Confidence            87 45668999999999999999999999999999999999998887543  344444444322 233333344444432


Q ss_pred             CCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHH
Q 008957          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (547)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (547)
                      +..--.++++...       ..    +   .++.....       +............++++.+..++|.+..-.+-+.+
T Consensus       187 rSl~f~~~~~~~~-------v~----~---~e~~~~~~-------~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl  245 (433)
T KOG3810|consen  187 RSLYFHRLEDKIS-------VG----D---LEEMNPQA-------SYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWAL  245 (433)
T ss_pred             hhhhhhcccccce-------ec----c---chhcCccc-------hhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHH
Confidence            2110000000000       00    0   00000000       00000112334556677788888888777777777


Q ss_pred             HHHHHHHHhhhccceeEeeccCchhh---HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          342 YNFVIGAYSYWGPKAGYNIYHMSNAD---MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  418 (547)
Q Consensus       342 ~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (547)
                      ...+++-+.+|....-.+.- .++..   ...=++..+.++++.+..|.+--.+.|...   .++.++...-+...+.+.
T Consensus       246 ~scg~~QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~---~ll~~~s~~~agllf~m~  321 (433)
T KOG3810|consen  246 ASCGYYQVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD---LLLAVGSAVQAGLLFIMA  321 (433)
T ss_pred             hhchhHHHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhH---HHHHHHHHHhhhhhhhhh
Confidence            76666666665544433332 11111   112234445666777788887655555421   344444444455555555


Q ss_pred             HhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccc----------
Q 008957          419 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN----------  488 (547)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~----------  488 (547)
                      ...+.|...+...+.........+.....++.....+.-|-..|+...+.-++-    .++.-.+.|..|          
T Consensus       322 ~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQ----silT~iVvd~~g~~L~ir~Q~~  397 (433)
T KOG3810|consen  322 QTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQ----SILTLIVVDDRGLGLDIRTQFV  397 (433)
T ss_pred             cccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHH----HhheEEEEcccccCCCcceeEE
Confidence            566777777777777666666666666667777777888888887644333322    222223333211          


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 008957          489 NWRKTTLALTSIFFLAAGI  507 (547)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~  507 (547)
                      -|..-|.+.+.+.++...+
T Consensus       398 ~Y~~Yf~v~~~i~~~~~~~  416 (433)
T KOG3810|consen  398 VYSSYFIVLGVIFLIGFGI  416 (433)
T ss_pred             EEeehHHHHHHHHHHHHHH
Confidence            2334466666666665544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.81  E-value=9.8e-09  Score=97.57  Aligned_cols=144  Identities=22%  Similarity=0.352  Sum_probs=120.3

Q ss_pred             cccccccccCc--cchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcccc--HHHHHHHHHHhh
Q 008957          106 SGIQGDFKLNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD--FWSIAICRMLVG  181 (547)
Q Consensus       106 ~~i~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--~~~l~~~r~l~G  181 (547)
                      +.+..+++.+.  .+.++..+.+.++..++.++.|.+.||+|||+.++.+.....++.++.++..+  .+.+++.|+++|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  105 (338)
T COG0477          26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQG  105 (338)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            55666666555  47899999999999999999999999999998888888776666777777766  899999999999


Q ss_pred             hhhhhhhhcccccccccCCC-CCcchhhhHHHH-hhhhhhhhhhhhHHhhcCC--CCchhHHHHHHHHHHHH
Q 008957          182 VGEASFISLAAPFIDDNAPV-PQKTAWLSMFYM-CIPTGVALGYVYGGVVGSH--LNWRYAFWGEAILMLPF  249 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~--~gwr~~f~~~~~~~~~~  249 (547)
                      ++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+...  .+||+.|.+........
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (338)
T COG0477         106 LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL  177 (338)
T ss_pred             hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            99999999999999999998 678999999888 5888889998877766643  67999777776655443

>PRK10133 L-fucose transporter; Provisional

Probab=98.80  E-value=3.2e-08  Score=98.18  Aligned_cols=137  Identities=10%  Similarity=-0.132  Sum_probs=112.8

Q ss_pred             ccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhh
Q 008957          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (547)
Q Consensus       109 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~  188 (547)
                      ++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.+ -+..-++.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999888877777766666643 3456678899999999


Q ss_pred             hcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHHHHHHHH
Q 008957          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLP  248 (547)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~  248 (547)
                      |...+...+..+++ .+.+.++... ..+|..++|.+.|.+.+..| -|..|++..+..+.
T Consensus       366 P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~  424 (438)
T PRK10133        366 PTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_pred             HHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            99999999998764 6777787765 44678888889999988887 78888876544433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.79  E-value=2.3e-09  Score=76.31  Aligned_cols=77  Identities=27%  Similarity=0.317  Sum_probs=72.4

Q ss_pred             CCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHH
Q 008957           98 DKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA  174 (547)
Q Consensus        98 ~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~  174 (547)
                      ||.|.|.+|.+++|.++|.++.|++.++.++||.+|.+...++.++..+++.+..+++...+..+.+++.++++.+.
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            67888999999999999999999999999999999999999999998889999999999999999999999887653

Note that many members are hypothetical proteins.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.79  E-value=2.4e-08  Score=93.54  Aligned_cols=125  Identities=16%  Similarity=0.152  Sum_probs=96.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh----hcCCceehHH-HHHHHHHHHHhhhccccHH---------
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFRLIGV-GLSVWTFATAGCGSSFDFW---------  171 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~a~~~~---------  171 (547)
                      |+..+++|++....+.+--.--+...+.+++.|..+|    ||||||.++. +.+...++.++..++.++.         
T Consensus        56 tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~  135 (498)
T KOG0637|consen   56 TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK  135 (498)
T ss_pred             cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc
Confidence            6777889999999999988889999999999999999    5898776554 5566666777777664432         


Q ss_pred             --------HHHHHHHHhhhhhhhhhhcccccccccCCCCCcch-hhhHHHHhhhhhhhhhhhhHHhhc
Q 008957          172 --------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA-WLSMFYMCIPTGVALGYVYGGVVG  230 (547)
Q Consensus       172 --------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~l~~~l~  230 (547)
                              .++++--+.=++.-.....+-+++.|...++++.+ +.+.+..+.++|.++|..+++++.
T Consensus       136 ~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~  203 (498)
T KOG0637|consen  136 PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLG  203 (498)
T ss_pred             ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccC
Confidence                    23334444444565777789999999998766666 999999999999999999887443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.79  E-value=5.5e-08  Score=96.69  Aligned_cols=121  Identities=17%  Similarity=0.209  Sum_probs=107.1

Q ss_pred             cccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc--cHHHHHHHHHHhhhhhhhhhh
Q 008957          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFIS  189 (547)
Q Consensus       112 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~~~~~~  189 (547)
                      ++.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+  |.+.+++.-++.|++.+...+
T Consensus       256 l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~  334 (428)
T PF13347_consen  256 LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFV  334 (428)
T ss_pred             hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccc
Confidence            4444 6778889999999999999999999999999999999999999999988886  999999999999999999999


Q ss_pred             cccccccccCCC-------CCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC
Q 008957          190 LAAPFIDDNAPV-------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL  233 (547)
Q Consensus       190 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~  233 (547)
                      ...++++|..+.       ++.|...+..+....+|..+++.+.+.+.+..
T Consensus       335 ~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~  385 (428)
T PF13347_consen  335 IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV  385 (428)
T ss_pred             ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            999999999873       34588889999999999999998888775433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.78  E-value=8.9e-09  Score=101.58  Aligned_cols=141  Identities=12%  Similarity=0.089  Sum_probs=100.5

Q ss_pred             eccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 008957          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVF  438 (547)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (547)
                      .++.+.... ...+++.++..++.++.|+++||+|||     +.+..+.++..+..++....++.+..++.-++.+++.+
T Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr-----~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~  119 (413)
T PRK15403         45 DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR-----PVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSIC  119 (413)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch-----HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            345554333 444666788888999999999999999     67766666666666666666677666666666666555


Q ss_pred             hcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 008957          439 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  507 (547)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  507 (547)
                      ...+.......+.+++++++++.++.+....+ |..+||.+.+.+.+.. +|+..|++.+++.++..+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~lg~~l~~~~-gw~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        120 FIATVGYVTVQEAFGQTKGIKLMAIITSIVLV-APIIGPLSGAALMHFV-HWKVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence            43333444556667778899999998777776 8888998888888765 4889998887766655443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.78  E-value=2.7e-08  Score=95.02  Aligned_cols=148  Identities=18%  Similarity=0.109  Sum_probs=134.0

Q ss_pred             ccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhh
Q 008957          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (547)
Q Consensus       109 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~  188 (547)
                      .+|++-.+...|........|-++.-++.+++..|+|+-+++.+++.+..+=.+..++.+|.|+.+-..+++|+..+..+
T Consensus       398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliW  477 (618)
T KOG3762|consen  398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIW  477 (618)
T ss_pred             HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHH
Confidence            46667777778888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccCCCCCcchhhhHHHH-hhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          189 SLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      .++.+|++...||+-|..+-++.+. ..++|--+|.++||.+...+|=|..|.+.++.+++.+++...+
T Consensus       478 aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  478 AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998865 4678999999999999999999999999999888776655544

>PRK09848 glucuronide transporter; Provisional

Probab=98.78  E-value=1.9e-08  Score=100.72  Aligned_cols=128  Identities=9%  Similarity=0.046  Sum_probs=103.0

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc--cHHHHHHHHHHhhhhhh
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEA  185 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~~  185 (547)
                      +++.+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+  +++.+++..++.|+|.+
T Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~  334 (448)
T PRK09848        255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG  334 (448)
T ss_pred             EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            3445676655445555555677888999999999999999999999999888887776654  67777778889999999


Q ss_pred             hhhhcccccccccCCCC-------CcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCc
Q 008957          186 SFISLAAPFIDDNAPVP-------QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  235 (547)
                      ...+...++++|..|.+       ++|...++.+....+|..+|+.+.+.+.+..|+
T Consensus       335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999888754       358899999999999999999988877644444

>TIGR00901 2A0125 AmpG-related permease

Probab=98.77  E-value=1.2e-08  Score=98.76  Aligned_cols=111  Identities=9%  Similarity=-0.035  Sum_probs=94.5

Q ss_pred             cccccccccCccchhHHHHHHH-HHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc-----------ccHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----------FDFWSI  173 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----------~~~~~l  173 (547)
                      |...+++|.+..+.+.+.++.. ++..++.+++|++.||+|||+.++.+.++.+++..+..+.           ++++.+
T Consensus       233 ~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (356)
T TIGR00901       233 TLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLML  312 (356)
T ss_pred             HHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence            4444558999999999888766 6788999999999999999999999888888776655442           456778


Q ss_pred             HHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhh
Q 008957          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP  216 (547)
Q Consensus       174 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  216 (547)
                      ..+.++.+++.+...+...+++.|.+|+++||+.+++++...+
T Consensus       313 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       313 FLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            8889999999999999999999999999999999999987664

>TIGR00788 fbt folate/biopterin transporter

Probab=98.75  E-value=7.1e-08  Score=96.42  Aligned_cols=125  Identities=10%  Similarity=-0.017  Sum_probs=111.1

Q ss_pred             cccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc----------cccHHHHHHHHHH
Q 008957          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----------SFDFWSIAICRML  179 (547)
Q Consensus       110 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------a~~~~~l~~~r~l  179 (547)
                      +++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+....          .++.+.++..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            578999999999999999999999999999999999999999999999998866431          1344455667788


Q ss_pred             hhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC
Q 008957          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (547)
Q Consensus       180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  234 (547)
                      .+++.+........++.+..|++.+|...+++.+..++|..+++.+++.+.++.|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999887665

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.74  E-value=9.8e-09  Score=84.47  Aligned_cols=129  Identities=16%  Similarity=0.197  Sum_probs=95.6

Q ss_pred             hhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeeccc
Q 008957          373 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV  452 (547)
Q Consensus       373 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (547)
                      ...++.+++.++.+++.||++||     +.+.....+.....+.....++.+...+...+.+++.+...+.......+..
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRK-----PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY   80 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence            34566778888999999999998     5665555555555555545566666666777777777777777777888888


Q ss_pred             CCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008957          453 KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  508 (547)
Q Consensus       453 ~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  508 (547)
                      |++.|+++.++.+...+. |..++|.+.+.+.+..+ |+..+.+.+.+.++..+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        81 PPEERGVALGLMSAGIAL-GPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILL  134 (141)
T ss_pred             ChhhhhHHHHHHHHhHHH-HHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHH
Confidence            889999999999877776 88899999999988754 7677777666655544443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.72  E-value=7.9e-08  Score=96.73  Aligned_cols=121  Identities=19%  Similarity=0.116  Sum_probs=97.0

Q ss_pred             CccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc-----cccHHHHHHHHHHhhhhhhhhhh
Q 008957          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLVGVGEASFIS  189 (547)
Q Consensus       115 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~~~~~l~~~r~l~G~~~~~~~~  189 (547)
                      +....+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+     ..+.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4556677778777899999999999999999999999888877766655432     35567777888889999999999


Q ss_pred             cccccccccCC-------CCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCc
Q 008957          190 LAAPFIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (547)
Q Consensus       190 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  235 (547)
                      ...++++|..+       .++.|..++......-+|..+++.+.|++.+..|+
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999966       33346688999999999999999999887654443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=2.6e-08  Score=91.59  Aligned_cols=150  Identities=12%  Similarity=0.115  Sum_probs=126.8

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcC--CceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      +.+.+..+..++|...--..+.+.++..+.|.++||++  |-.....+++..++.+....+++++.++++-++..|++.+
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~  376 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIG  376 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHH
Confidence            56677766679999999999999999999999999999  6555566677777777777899999999999999888888


Q ss_pred             hhhhcccccccccCCCC------CcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          186 SFISLAAPFIDDNAPVP------QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      .........+.+..+.+      -.|...++...++++|..+||.++|.+.+..|++|...+.++..++.+.++.++.
T Consensus       377 ~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  377 LADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR  454 (464)
T ss_pred             HHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777666666666543      3468889999999999999999999999999999999999999999888777664

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.69  E-value=1.1e-07  Score=97.34  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=124.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhh-cCCceehHHHHHHHHHHHHhhhcccc--------HHHHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFD--------FWSIAIC  176 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~--------~~~l~~~  176 (547)
                      ..+.+.+|.+.+....+...+....-+..+++|.++|+ +||+++++++.++..+|.++.+++..        ...++++
T Consensus        12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g   91 (654)
T TIGR00926        12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG   91 (654)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence            34556688888888899999999999999999999996 59999999999999999988876421        2346677


Q ss_pred             HHHhhhhhhhhhhcccccccccCCCC---CcchhhhHHHHhhhhhhhhhhhhHHhhcCC-------CCchhHHHHHHHHH
Q 008957          177 RMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILM  246 (547)
Q Consensus       177 r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------~gwr~~f~~~~~~~  246 (547)
                      -.+.++|.|+.-|...+...|.++++   +|-..+.++..+.++|..+++++.+++.+.       .+|...|.+.++..
T Consensus        92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m  171 (654)
T TIGR00926        92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM  171 (654)
T ss_pred             HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence            88888999999999999999999764   366788999999999999999998888633       36999999998887


Q ss_pred             HHHHHHHHhhc
Q 008957          247 LPFAVLAFVIK  257 (547)
Q Consensus       247 ~~~~~~~~~~~  257 (547)
                      ++..++.....
T Consensus       172 ~ia~lvf~~g~  182 (654)
T TIGR00926       172 ILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHhc
Confidence            77666555433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.68  E-value=1.2e-07  Score=91.63  Aligned_cols=143  Identities=8%  Similarity=-0.082  Sum_probs=100.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCc---eehH-HHHHHHHHHHHhhhccccHHHHHHHHHHhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF---RLIG-VGLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr---~~l~-~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  181 (547)
                      |.+.++.|.+.. .+...++..+...++   .++++||..||   +... ...++.+++..+.+++.+.+..++.-.+.|
T Consensus       216 p~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  291 (368)
T TIGR00903       216 EAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAG  291 (368)
T ss_pred             HHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            555566676653 455555555544444   57788877654   3323 234444444445555555555555666777


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  254 (547)
                      ++.....+...++.+|.+|++.|+++.|+.+....+|.+++|++.+.+..  +-+..|.+.+++.++.++..+
T Consensus       292 ~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       292 LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            77777777788899999999999999999999999999999998887763  678888888888887777654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.68  E-value=3e-08  Score=98.95  Aligned_cols=181  Identities=14%  Similarity=0.105  Sum_probs=121.8

Q ss_pred             hcccchhHHHHHHHHHHHHHHH----HHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHH
Q 008957          326 LLQEKVYVVNVLGYIAYNFVIG----AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFK  401 (547)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  401 (547)
                      .+++++++..+....+.....+    .....++.+..+.++.+. ...+.....++..++.++.|+++|.+|||     .
T Consensus        36 ~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~-~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----~  109 (599)
T PF06609_consen   36 YYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDN-WSWFSTAWTLASAVSFPFVGRLSDLFGRR-----Y  109 (599)
T ss_pred             ceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCcc-chHHHHHHHHHHHHHHHhhHHHHHHhcch-----H
Confidence            3456666655543333332221    122334455555555433 33444556677888889999999999999     8


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhh
Q 008957          402 LLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVG  481 (547)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g  481 (547)
                      .++.+.++..+..+.....++...++....+.+++.+... .....+.|..|.+.|..+.++... ..+....++|.+..
T Consensus       110 ~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~-~~i~~~~~~~~ia~  187 (599)
T PF06609_consen  110 FFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASI-PFIITTWISPLIAQ  187 (599)
T ss_pred             HHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHH-HHHhhhcccHHHHH
Confidence            8889999999988888888888888888888877755443 344457888888999888877643 34445556777766


Q ss_pred             hhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008957          482 VLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLK  515 (547)
Q Consensus       482 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (547)
                      .+..+ ++||+.|++.++...++.++.++.++.|
T Consensus       188 ~~~~~-~~WRw~~~~~~i~~~i~~vl~~~fY~PP  220 (599)
T PF06609_consen  188 LFAAH-SGWRWIFYIFIIWSGIALVLIFFFYFPP  220 (599)
T ss_pred             HhccC-CCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            65544 5799999999887777666555444333

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.68  E-value=2.8e-08  Score=97.69  Aligned_cols=167  Identities=8%  Similarity=0.023  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHH
Q 008957          333 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  411 (547)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  411 (547)
                      .......+...+.........|.+ ++.++.+..+. .+.+...++..++.+..|++.||+|+|     +.+..+..+..
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----~~~~~g~~l~~   79 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK-----AGILLGLFLYA   79 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHH
Confidence            344444444454444445566655 55567775444 555677889999999999999999999     67766666665


Q ss_pred             HHHHHHHH---hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcc--
Q 008957          412 ISCLTAFC---LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH--  486 (547)
Q Consensus       412 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~--  486 (547)
                      +..++...   .++.+.+++..++.+.+.+...+.......+..+++.|++..++.+...+. |..++|.+.+.+...  
T Consensus        80 ~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-G~~~g~~i~~~l~~~~~  158 (410)
T TIGR00885        80 LGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPF-GSIIGMVVAQQLILSNL  158 (410)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCC
Confidence            55544322   235666667777788888888777777777778888999999998877777 888899888777422  


Q ss_pred             -----------------------cchhHHHHHHHHHHHHHHHH
Q 008957          487 -----------------------VNNWRKTTLALTSIFFLAAG  506 (547)
Q Consensus       487 -----------------------~~~~~~~~~~~~~~~~~~~~  506 (547)
                                             ..+|+.+|++.+++.++..+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~  201 (410)
T TIGR00885       159 PHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL  201 (410)
T ss_pred             ccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   12477788777776554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.64  E-value=5.4e-08  Score=93.38  Aligned_cols=133  Identities=14%  Similarity=0.080  Sum_probs=106.2

Q ss_pred             hhhccceeEeeccCchhh-H-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 008957          350 SYWGPKAGYNIYHMSNAD-M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL  427 (547)
Q Consensus       350 ~~~~p~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (547)
                      .+..| ++.+.++.+..+ . .+...+..+..+..+++|++.||+|.|     +++..+.+...+..++..+.++...+.
T Consensus        46 s~a~p-~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----~vL~l~~l~Wsl~t~L~~fa~Sl~~L~  119 (511)
T TIGR00806        46 SFITP-YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----PVLVLQALSFVCVWLLLLLGTSVWHMQ  119 (511)
T ss_pred             HHHHH-HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444 444467777655 3 555677788899999999999999999     788888888888887777777888888


Q ss_pred             HHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHH
Q 008957          428 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  492 (547)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  492 (547)
                      ++-++.|++.+..+ ....++..-+|+++|+++.|+.+....+ |.++++++.+++. .+| |+.
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~v-G~~Ia~~L~qll~-s~g-Wr~  180 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLL-GVFLSSVLGQLLV-TLG-WIS  180 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hcC-chh
Confidence            88889999988888 7888888889999999999999877777 9899999998854 334 543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.64  E-value=2.3e-07  Score=84.70  Aligned_cols=152  Identities=18%  Similarity=0.120  Sum_probs=124.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc-CCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      |.|..|-|+|..+.|++.+...+.....++....+++|. .+|+..+...+++.+|.+.+.+.+.-..++. -++.|+|.
T Consensus       232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~  310 (395)
T COG2807         232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQ  310 (395)
T ss_pred             HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCcc
Confidence            889999999999999999999999999999999999976 6888888889999999988888776544444 49999999


Q ss_pred             hhhhhcccccccccCCC-CCcchhhhHHHHhhhhhhhhhhhhHHhhcCCC-CchhHHHHHHHHHHHHHHHHHhhcc
Q 008957          185 ASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKP  258 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~p  258 (547)
                      |..++.+..++.+-.+. ++-++..++.+....+=..+||.+.|++-|.. +|+..++..+...+.+.+..+..-|
T Consensus       311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcch
Confidence            99999999999988764 44445555556555555667899999998765 4999999998888877777766543

>PRK09669 putative symporter YagG; Provisional

Probab=98.60  E-value=4.3e-07  Score=90.75  Aligned_cols=118  Identities=14%  Similarity=0.101  Sum_probs=93.8

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc--cccHHHHHHHHHHhhhhhhhhhhcccccc
Q 008957          118 QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS--SFDFWSIAICRMLVGVGEASFISLAAPFI  195 (547)
Q Consensus       118 ~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--a~~~~~l~~~r~l~G~~~~~~~~~~~~~i  195 (547)
                      ..+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+  .++.+.+++..++.|++.+...+...+++
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777888889999999999999999999888766654433222  35777788888999999999999999999


Q ss_pred             cccCCC-------CCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCc
Q 008957          196 DDNAPV-------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (547)
Q Consensus       196 ~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  235 (547)
                      +|..+.       ++.|...+..+....+|..+|+.+++.+.+..|+
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            998862       2345677888888999999999999988765555

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.59  E-value=2.9e-09  Score=106.81  Aligned_cols=155  Identities=12%  Similarity=0.034  Sum_probs=108.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhh--c--cc------cHHHHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG--S--SF------DFWSIAI  175 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--a~------~~~~l~~  175 (547)
                      +.+.+..+.+..  -.......+...++.++...+.||+|||++++.+.++.+++.+..+  +  .+      +...+..
T Consensus       277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  354 (451)
T PF00083_consen  277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF  354 (451)
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence            667777777666  2223344455566777778999999999999999999888887764  1  11      1222222


Q ss_pred             HHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHh
Q 008957          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (547)
Q Consensus       176 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  255 (547)
                      .............+....+..|.+|.+.|+++.++......++..+++.+...+.+..+-...+++.++.+++..+..++
T Consensus       355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence            22111112213446667888999999999999999999999999999988888877666346677777777777778888


Q ss_pred             hccCccC
Q 008957          256 IKPLQLK  262 (547)
Q Consensus       256 ~~p~~~~  262 (547)
                      +.||+..
T Consensus       435 ~lpET~g  441 (451)
T PF00083_consen  435 FLPETKG  441 (451)
T ss_pred             EEeeCCC
Confidence            8888543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.58  E-value=7.7e-06  Score=74.97  Aligned_cols=353  Identities=9%  Similarity=-0.013  Sum_probs=182.1

Q ss_pred             hhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh-
Q 008957           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK-  142 (547)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-  142 (547)
                      ++-+..+.+.+.+.+.-....+                  ++|.+.+.=|.|.++.+...-++.=  ..--++|.++.| 
T Consensus        30 ~~~illLl~LYllQGiP~GL~~------------------~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs   89 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG------------------AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDS   89 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh------------------hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHH
Confidence            3445566666777666555544                  2277777778887777665443321  234678899999 


Q ss_pred             ----hcCCceehHH-HHHHHHHHHHhhh-----------ccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcch
Q 008957          143 ----SHNPFRLIGV-GLSVWTFATAGCG-----------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA  206 (547)
Q Consensus       143 ----r~Grr~~l~~-~~~~~~~~~~~~~-----------~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~  206 (547)
                          |+||||.-++ +..+.+..+.+.+           -.++...+...-++.-+..+.-..+.-.+.-....+++-|.
T Consensus        90 ~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgy  169 (510)
T KOG3574|consen   90 VYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGY  169 (510)
T ss_pred             HHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCc
Confidence                9999985322 2233333222222           12344444344455555666666666666667778888888


Q ss_pred             hhhHHHHhhhhhhhhhhhhHHhhcC-------CCCch---------hHHHHHHHHHHHHHHHHHhhccCccCCCCCCCcc
Q 008957          207 WLSMFYMCIPTGVALGYVYGGVVGS-------HLNWR---------YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG  270 (547)
Q Consensus       207 ~~~~~~~~~~~G~~~g~~l~~~l~~-------~~gwr---------~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  270 (547)
                      +......+.+.|..++..+--.+.+       ..+|.         .-++..+.+.++...+..+..+|.+..       
T Consensus       170 aST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~-------  242 (510)
T KOG3574|consen  170 ASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES-------  242 (510)
T ss_pred             hhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh-------
Confidence            8777777777777666554322222       01121         223334444444444554443221111       


Q ss_pred             ccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHh
Q 008957          271 KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYS  350 (547)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (547)
                        ..                  ++.+                 ...++..+.++++++-|....+.......-.++.+-.
T Consensus       243 --~~------------------~e~~-----------------~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~d  285 (510)
T KOG3574|consen  243 --VD------------------EELE-----------------LGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAAD  285 (510)
T ss_pred             --hh------------------hhhh-----------------cCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhh
Confidence              00                  0000                 1222333556677777777777766666666666655


Q ss_pred             hhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccc--cchh--HHHHHHHHHHHHHHHHHHHHHhhh---
Q 008957          351 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA--TISN--AFKLLSAATFLGAISCLTAFCLSS---  422 (547)
Q Consensus       351 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---  422 (547)
                      ...+.-+.+. +.+.... +..    +..++..++.++...|+-.  |+..  .+.+. .=........++....++   
T Consensus       286 a~t~LkLle~-Gv~ke~Lal~~----v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~-~R~~~~~~~t~Lv~~~~~~~~  359 (510)
T KOG3574|consen  286 ALTSLKLLEH-GVPKEELALIA----VPLVPLQIALPLYIGKWTAGPRPLNVFLKAVP-YRLGGGLVQTALVWWTPTLGH  359 (510)
T ss_pred             hccchHHHHc-CCChhHheeee----eehhhHHHhhhhhheeecCCCCcchHHHHhhh-HHHHHHHHHHHHHhhhccccc
Confidence            5555555553 3333222 222    3333333333333333322  1100  00111 111111111112111111   


Q ss_pred             ---------HHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhccc
Q 008957          423 ---------LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  487 (547)
Q Consensus       423 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  487 (547)
                               ....+....+..++....+...+...++..+|..-|+-+.+.|+..++ |+-.-..+..++.|..
T Consensus       360 ~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnL-Gg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  360 SDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNL-GGNWPGTVALWLADGL  432 (510)
T ss_pred             CCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHh-cCCcHHHHHHHhcccC
Confidence                     111122233444444555556677788888999999999999999999 5554455777777754

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.57  E-value=2e-07  Score=91.81  Aligned_cols=168  Identities=13%  Similarity=0.024  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeec----ccccchhHHHHHHHHHHHH
Q 008957          336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ----MGATISNAFKLLSAATFLG  410 (547)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~~~~~~  410 (547)
                      ....+...+.+.....+++.|+++ .+.+.... ....+..+.+++..++.|+++||    +|||+    ..++.+....
T Consensus        10 ~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr----p~il~g~~~~   84 (477)
T TIGR01301        10 ASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR----PFIAAGAALV   84 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH----HHHHHHHHHH
Confidence            333444455555666666667655 45554333 44456668888999999999995    88884    3443334444


Q ss_pred             HHHHHHHHHhhhH-----------------HHHHHHHHHHHHHHhhcCccceeeeecccCCcch--hHHHHHHHHHHHhh
Q 008957          411 AISCLTAFCLSSL-----------------YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR--ALSMAISTVSIHIF  471 (547)
Q Consensus       411 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~g~~~~~~~~~  471 (547)
                      ....+++....+.                 +..++.+.+..++.....++..+++.|..|+++|  +.+.++.+...++ 
T Consensus        85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l-  163 (477)
T TIGR01301        85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI-  163 (477)
T ss_pred             HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH-
Confidence            3443333332221                 2223333444556667777888899999998654  5788887766666 


Q ss_pred             cCCCccchhhhh--hccc------------chhHHHHHHHHHHHHHHHHHHH
Q 008957          472 GDVPSSPLVGVL--QDHV------------NNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       472 g~~~~~~~~g~l--~~~~------------~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      |.++|+.+.+..  .+..            .+++..|++.+++.+++.+...
T Consensus       164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~  215 (477)
T TIGR01301       164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIAL  215 (477)
T ss_pred             HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHe
Confidence            888888766654  1111            1456677776665555444433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.54  E-value=8.1e-08  Score=99.20  Aligned_cols=151  Identities=9%  Similarity=-0.039  Sum_probs=101.7

Q ss_pred             hhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhh--------
Q 008957          351 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--------  421 (547)
Q Consensus       351 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  421 (547)
                      ..++. +++.++.+.... .+.+...++..++.++.+++.||.+|+     +++..+.++..+..++....+        
T Consensus        54 ~~l~~-iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----~~i~~g~ll~~lg~ll~alphf~~~~y~~  127 (633)
T TIGR00805        54 SSLTT-IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP-----IVIGIGCAIMGLGSFLLSLPHFLSGRYSY  127 (633)
T ss_pred             hhchh-hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc-----eEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence            33443 444566664443 556677788899999999999999998     555555555555444433221        


Q ss_pred             -------------------------------------------hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchh
Q 008957          422 -------------------------------------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRA  458 (547)
Q Consensus       422 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  458 (547)
                                                                 ....+++.-++.|++.+..++....++.+.++++.|+
T Consensus       128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~  207 (633)
T TIGR00805       128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP  207 (633)
T ss_pred             cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence                                                       1123344556666666677777788888889999999


Q ss_pred             HHHHHHHHHHHhhcCCCccchhhhhhccc---------------------chhHHHHHHHHHHHHHHHHHH
Q 008957          459 LSMAISTVSIHIFGDVPSSPLVGVLQDHV---------------------NNWRKTTLALTSIFFLAAGIW  508 (547)
Q Consensus       459 ~~~g~~~~~~~~~g~~~~~~~~g~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~  508 (547)
                      ...|+.+....+ |.++|+.+++++.+..                     |.|+..|++.+++.++..+.+
T Consensus       208 ~~~~i~~~~~~i-G~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l  277 (633)
T TIGR00805       208 LYIGILESIAVF-GPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF  277 (633)
T ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999766665 8899998888887543                     235666777776665544433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.46  E-value=2.3e-07  Score=94.87  Aligned_cols=130  Identities=15%  Similarity=0.153  Sum_probs=111.1

Q ss_pred             hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeee
Q 008957          369 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  448 (547)
Q Consensus       369 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (547)
                      ...++..++..+|.++.|.++||+|||     +.++.+.++..++.+.....++.+...++=++.|++.+........+.
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk-----~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRK-----PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccH-----HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            445677889999999999999999999     888899998888888888889999999999999999999999999999


Q ss_pred             ecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008957          449 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  508 (547)
Q Consensus       449 ~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  508 (547)
                      .|.++++.|+.+..+ ....+. +..+++...+++..   +|++.+++.....++..++.
T Consensus       197 ~E~~~~~~R~~~~~~-~~~~~~-~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~  251 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTL-GGFFFV-GGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLW  251 (521)
T ss_pred             eeecCcchhhHHHHH-HHHHHH-HHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 566777 55667878888877   58888888777766655553

>PTZ00207 hypothetical protein; Provisional

Probab=98.46  E-value=2.2e-07  Score=93.52  Aligned_cols=153  Identities=16%  Similarity=0.116  Sum_probs=94.1

Q ss_pred             HHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh----
Q 008957          346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----  420 (547)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  420 (547)
                      .+.+..+.|.+ ++.++.+..+. .+..+.... ....++.|++.||+|+|     +++..+.++..+..++....    
T Consensus        43 ~y~fsv~s~~L-~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R-----~vllig~ll~~iG~ll~ala~~~~  115 (591)
T PTZ00207         43 MYAFNLISGAM-QARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPR-----PIFVLSMTVFCLGTLLFALTFQEV  115 (591)
T ss_pred             HHHHHHHHHHH-HHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHHhccc
Confidence            44555555654 45567775443 222222222 23455689999999999     77777777666666555554    


Q ss_pred             --hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCC-CccchhhhhhcccchhHHHHHHH
Q 008957          421 --SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV-PSSPLVGVLQDHVNNWRKTTLAL  497 (547)
Q Consensus       421 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~-~~~~~~g~l~~~~~~~~~~~~~~  497 (547)
                        .+.+.+.+..++.+.+.+...+.....+.+.+ |+.||.+.|+.....++ |.+ +++...+++.+   ++...+++.
T Consensus       116 i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gL-GsaI~~~l~~~l~~~---~~~~~fl~l  190 (591)
T PTZ00207        116 IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGL-GSAILGSIQLAFFSD---NTSAYFFFL  190 (591)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---hHHHHHHHH
Confidence              35566666666666666655555555556654 68899999999888777 655 45545544443   355666666


Q ss_pred             HHHHHHHHHHHHH
Q 008957          498 TSIFFLAAGIWFV  510 (547)
Q Consensus       498 ~~~~~~~~~~~~~  510 (547)
                      +++.++..++...
T Consensus       191 ~vl~~vv~ll~~~  203 (591)
T PTZ00207        191 MSFALVVGILAIV  203 (591)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666555444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.44  E-value=5.8e-07  Score=88.45  Aligned_cols=146  Identities=19%  Similarity=0.282  Sum_probs=115.7

Q ss_pred             ccCchh-hHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHH
Q 008957          361 YHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLV  437 (547)
Q Consensus       361 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  437 (547)
                      +..+.. ...+.+....|.+++.+.+|++.||+|.|     +++..+.++..+..++.....  +.+..+++=++-|++.
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r-----~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR-----RVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ  142 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence            444432 33555677899999999999999999999     788777777777776666553  3345566667788888


Q ss_pred             hhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008957          438 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  512 (547)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (547)
                      +..++....+...-.|+++|++..++.....++ |.+++-++.|++-+...+|+..|++.+.+.++..++++...
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~-g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~  216 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQL-GTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY  216 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999766666 88888779999999844599999999998887777665443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.44  E-value=6.2e-06  Score=77.46  Aligned_cols=149  Identities=19%  Similarity=0.166  Sum_probs=125.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh-hcCCceehHHHHHHHHHHHHhh---hccccHHHHHHHHHHhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK-SHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVG  181 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~G  181 (547)
                      |+=.+-||+|..|...++..+..|..++....|++.. |.++|++..+|+....++..+.   +...+.+.+...-++.|
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            5566779999999999999999999999999999988 6677888888888777776553   45568899999999999


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC----------CCCchhHHHHHHHHHHHHHH
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAFWGEAILMLPFAV  251 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~----------~~gwr~~f~~~~~~~~~~~~  251 (547)
                      ++.|.+.....+.+.+...+++.|..+|.+.....++..+|-.+++.+.|          ..+|-.+|.+.++..++...
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998887643          23577888888776655555


Q ss_pred             HHH
Q 008957          252 LAF  254 (547)
Q Consensus       252 ~~~  254 (547)
                      +..
T Consensus       393 ll~  395 (403)
T PF03209_consen  393 LLG  395 (403)
T ss_pred             HHH
Confidence            443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.37  E-value=4.6e-06  Score=80.62  Aligned_cols=125  Identities=17%  Similarity=0.105  Sum_probs=103.5

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc--cHHHHHHHHHHhhhhhh
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEA  185 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~~  185 (547)
                      ..--+|.++.+..+.......+..++.+++.++++|+|+|+++.++.++..++.++..+.+  +.+.+++..++.++|.+
T Consensus       263 ~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~  342 (467)
T COG2211         263 VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG  342 (467)
T ss_pred             EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh
Confidence            3344566667777888888889999999999999999999999999999999999888766  78888999999999999


Q ss_pred             hhhhcccccccccCCC-------CCcchhhhHHHHhhhhhhhhhhhhHHhhcCC
Q 008957          186 SFISLAAPFIDDNAPV-------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSH  232 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~  232 (547)
                      ...+...++++|..+-       +.-|...+......=+|..++..+.+++.+.
T Consensus       343 ~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         343 IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888752       3336677777777778888888777776543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.35  E-value=1.9e-05  Score=79.58  Aligned_cols=152  Identities=14%  Similarity=0.084  Sum_probs=121.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc-CCceehHHHHHHHHHHHHhhhcccc---------------
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFD---------------  169 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~---------------  169 (547)
                      ..+.++++.+...+.-..+.+.-......+.+++++|-| ||-+++.++.++..+|..+..++..               
T Consensus        62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~  141 (571)
T KOG1237|consen   62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG  141 (571)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence            667888888888888888899989999999999999976 8999999999999888765443211               


Q ss_pred             ----------HHHHHHHHHHhhhhhhhhhhcccccccccCC---CC---CcchhhhHHHHhhhhhhhhhhhhHHhhcCCC
Q 008957          170 ----------FWSIAICRMLVGVGEASFISLAAPFIDDNAP---VP---QKTAWLSMFYMCIPTGVALGYVYGGVVGSHL  233 (547)
Q Consensus       170 ----------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~  233 (547)
                                ...++.+.-+..+|.|+.-|...++-+|-++   ++   .+...+.++....++|..++..+-.+.-+..
T Consensus       142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~  221 (571)
T KOG1237|consen  142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV  221 (571)
T ss_pred             CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence                      1356667778888999999999999999998   32   2336788999999999999988888888889


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhc
Q 008957          234 NWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       234 gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      +|.+-|.+..+..++..++.+...
T Consensus       222 ~w~lgf~i~~~~~~lai~iF~~g~  245 (571)
T KOG1237|consen  222 GWKLGFGIPTVLNALAILIFLPGF  245 (571)
T ss_pred             cceeeccHHHHHHHHHHHHHHcCc
Confidence            999999999877766555544433

>PRK11462 putative transporter; Provisional

Probab=98.26  E-value=3.1e-06  Score=84.63  Aligned_cols=119  Identities=10%  Similarity=0.024  Sum_probs=82.5

Q ss_pred             cchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccc--cHHHHHHHHHHhhhhhhhhhhccccc
Q 008957          117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPF  194 (547)
Q Consensus       117 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~~~~~~~~~~~  194 (547)
                      ...+.+.+.+.++..++.+++++++||+|+|+.+..+..+.++..++..+.+  +...+++.-++.|++.+...+...++
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888899999999999999999999987766555444344333322  23344555566788877777766777


Q ss_pred             ccccCC-------CCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCc
Q 008957          195 IDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (547)
Q Consensus       195 i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  235 (547)
                      ++|..+       .++-|..++.......+|..+|+.+++.+.+..|+
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777766       33335556777788888999998888876644333

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.25  E-value=2.1e-07  Score=88.96  Aligned_cols=177  Identities=12%  Similarity=0.049  Sum_probs=124.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhccceeEeecc----CchhhH-hhhhhhcccccccceeeeeeeecc-cccchhHHHH
Q 008957          329 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH----MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKL  402 (547)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~  402 (547)
                      .+.++.+...-+.--+.+|++-..+-.|+....+    .+...+ .+...+....-+..+++||++||+ |+|     +.
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~-----~t   94 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR-----RT   94 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh-----HH
Confidence            3456666666777777777776666666555544    664333 222333333334567899999995 777     66


Q ss_pred             HHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhcCccceeeeecccCC--cchhHHHHHHHHHHHhhcCCCccc
Q 008957          403 LSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP--SLRALSMAISTVSIHIFGDVPSSP  478 (547)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~g~~~~~~~~~g~~~~~~  478 (547)
                      +..+.++.++.-+.+...  .......+.+.+...+.+..=+....++.+.+++  .+|-.+.++.....++ |+.++|.
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNi-Gsl~~p~  173 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINI-GSLIAPI  173 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeeh-HHHHHHH
Confidence            666666666665555554  3455566666666677788878888888888887  3577788888888888 8999999


Q ss_pred             hhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 008957          479 LVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  512 (547)
Q Consensus       479 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (547)
                      +.+++.+..| |+..|...++-...+.+.+...+
T Consensus       174 i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         174 ITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999976 88999988888888777776554

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.21  E-value=8.4e-07  Score=83.45  Aligned_cols=131  Identities=10%  Similarity=-0.018  Sum_probs=100.7

Q ss_pred             HHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcccc-H-------HHHHHHHHHhhhhhhhhhhcccccccccC
Q 008957          128 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD-F-------WSIAICRMLVGVGEASFISLAAPFIDDNA  199 (547)
Q Consensus       128 ~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~-~-------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  199 (547)
                      .++..|..+..++.|+.|||++.+.|.+++++..+..+...| .       ..+.+..++.-+|-   ......+-+|.+
T Consensus       359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP---n~ttfivpaE~F  435 (538)
T KOG0252|consen  359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP---NATTFIVPAEIF  435 (538)
T ss_pred             HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC---CceeEEeehhhc
Confidence            334447778888999999999999999999999999988877 1       12222333333332   234556679999


Q ss_pred             CCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC-----CCCchhHHHHHHHHHHHHHHHHHhhccCccC
Q 008957          200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-----HLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (547)
Q Consensus       200 ~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-----~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (547)
                      |.+-|+.+-|+..+..-.|.++|...-.++.+     ..+-|++|++.+..+++..+..+++ ||+..
T Consensus       436 ParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk~  502 (538)
T KOG0252|consen  436 PARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETKG  502 (538)
T ss_pred             hHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe-ecccc
Confidence            99999999999999999999999999889888     7789999999998877665555444 56443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.19  E-value=1.3e-05  Score=81.60  Aligned_cols=156  Identities=11%  Similarity=-0.043  Sum_probs=105.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccH-------------HH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF-------------WS  172 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~-------------~~  172 (547)
                      +.+-+..+.+... .+...+..+...++..++.++.||+|||+.++.+...+.++.++.+.....             ..
T Consensus       319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
T KOG0254|consen  319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA  397 (513)
T ss_pred             HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence            6666666766444 566667777777888888999999999999999999999999887743211             11


Q ss_pred             HHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHH-
Q 008957          173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV-  251 (547)
Q Consensus       173 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~-  251 (547)
                      +...-+..........+....+.+|.+|.+-|+++.++......+...+-......+....++...|...+..+.+..+ 
T Consensus       398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~  477 (513)
T KOG0254|consen  398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLII  477 (513)
T ss_pred             HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            2222222233333345556678899999999999999888777766554433333444333356777777777777766 


Q ss_pred             HHHhhccCccC
Q 008957          252 LAFVIKPLQLK  262 (547)
Q Consensus       252 ~~~~~~p~~~~  262 (547)
                      ..+++.||+..
T Consensus       478 fv~~~~pETkg  488 (513)
T KOG0254|consen  478 FVFFFVPETKG  488 (513)
T ss_pred             HheEEcccCCC
Confidence            56667788543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.19  E-value=6.1e-06  Score=67.67  Aligned_cols=109  Identities=9%  Similarity=0.111  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccC
Q 008957          120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  199 (547)
Q Consensus       120 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  199 (547)
                      -.-.++......+++++.+.+.+++|.|+.+++|.+.+.+-.+.. +-++.+.++.+-.+.|++.+..+++...++.+..
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            334667777788888999999999999999999999998655544 4567889999999999999999999999999999


Q ss_pred             CCCCcchhhhHHHHhhhhhhhhhhhhHHhh
Q 008957          200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (547)
Q Consensus       200 ~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  229 (547)
                      ++++|++-.+++-.....+.++|.++...+
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988888888887766544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.14  E-value=7.2e-06  Score=76.35  Aligned_cols=142  Identities=15%  Similarity=0.117  Sum_probs=118.1

Q ss_pred             cccccc-cccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      +....| .|.+..+.+...+.+..+..+|.+...++..|+...|.+.+..++..+-++..+++++...+ .+-++.|++.
T Consensus       260 ~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~  338 (422)
T COG0738         260 VSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLIGLFN  338 (422)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHh
Confidence            334444 78899999999999999999999999999999999999999999998888889999996554 4567889999


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHH
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  250 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~  250 (547)
                      +..+|...+.-.+..+  +.....+..-.+..+|.++-|.+-|++.+..|-...+.+...+|.+..
T Consensus       339 simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         339 SIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999998  344455556666778889999999999999998888886666665554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.14  E-value=1.5e-06  Score=85.88  Aligned_cols=135  Identities=20%  Similarity=0.172  Sum_probs=107.5

Q ss_pred             hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeee
Q 008957          369 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  448 (547)
Q Consensus       369 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (547)
                      ....++.++.+++.+.++.+.||++-.     +.+....++..+..++....++.+.++++-++.|++.+..+|....++
T Consensus        85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls-----~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l  159 (495)
T KOG2533|consen   85 VLDTVFYVGYIIGQFPSGLLGDRFPLS-----KGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL  159 (495)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCChH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence            445677899999999999999999955     555555555555555555678899999999999999999999999999


Q ss_pred             ecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc-----ccchhHHHHHHHHHHHHHHHHHHH
Q 008957          449 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-----HVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       449 ~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      ..-+.+++|+.-+|+.++..++ |.++|+.+...+..     ..-+|++.|++-+++.++..++.+
T Consensus       160 g~wy~~~e~g~r~~~~~a~~~~-g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  160 GNWYGKSERGLRMGIWYASASL-GNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             HhhcChhhhhhhHHHHHHhcch-hhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            9999999999999999877776 88888877766532     123599999999988776665544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.04  E-value=0.00015  Score=71.60  Aligned_cols=245  Identities=13%  Similarity=0.093  Sum_probs=135.7

Q ss_pred             CccchhHHHHHHHH-HHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc---------c----------------
Q 008957          115 NNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---------F----------------  168 (547)
Q Consensus       115 s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------~----------------  168 (547)
                      .+..+..+-....+ ...+......+++++++|.+++-+.+..+.....+.++.         +                
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            34445555443333 555667889999999999998887776666655555542         1                


Q ss_pred             ------cHHHHHHHHHHhhhhhhhhhh-cccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC---------C
Q 008957          169 ------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---------H  232 (547)
Q Consensus       169 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~---------~  232 (547)
                            +.|.+.+.-+..-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+..++.+         .
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~  215 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV  215 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence                  122222333333333333333 356778999999999999999999999999998888877776         2


Q ss_pred             CCchhHHHHHHHHHHHH---HHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccc
Q 008957          233 LNWRYAFWGEAILMLPF---AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGE  309 (547)
Q Consensus       233 ~gwr~~f~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (547)
                      ..|...+.......++.   .+.....+.+....  +++..+..                           ..+++    
T Consensus       216 ~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~--~~~~~~~~---------------------------~~~kk----  262 (491)
T PF03219_consen  216 DAWELSLNSLMGIVLILGIVIILLYRYMNKNVLT--DPRFYPSA---------------------------KKKKK----  262 (491)
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--ccccchhh---------------------------hcccc----
Confidence            24654332222111111   11222222211100  00000000                           00000    


Q ss_pred             hhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchh-h---Hhhhhhhcccccccceee
Q 008957          310 SRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-D---MMFGGVTIVCGIVGTISG  385 (547)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~  385 (547)
                         .+...+..++.+.++++|.+..+.+...+++...+.+..-.-...++.+..+.. +   ..+....++..++..+++
T Consensus       263 ---~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~  339 (491)
T PF03219_consen  263 ---KKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLS  339 (491)
T ss_pred             ---cCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               012234457788899999999888888877777666554333333333322211 1   122233344555555777


Q ss_pred             eeeeeccccc
Q 008957          386 GFILDQMGAT  395 (547)
Q Consensus       386 g~l~d~~~~~  395 (547)
                      +.+.+|+|-+
T Consensus       340 ~~iir~~GW~  349 (491)
T PF03219_consen  340 SNIIRRFGWR  349 (491)
T ss_pred             HHHHHHhhHH
Confidence            7888888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.03  E-value=0.00022  Score=68.58  Aligned_cols=55  Identities=11%  Similarity=0.102  Sum_probs=39.8

Q ss_pred             HHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcc
Q 008957          431 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  486 (547)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  486 (547)
                      .+..+.....+...++.-....+|..-|+-+.+.|++.|+ |+-.-..+.=++.|.
T Consensus       413 ~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNL-GGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  413 VLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNL-GGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhc-CCCchHHHHHHHhhh
Confidence            3444444566667778888888999999999999999999 665444455555553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.01  E-value=0.00046  Score=66.28  Aligned_cols=253  Identities=15%  Similarity=0.094  Sum_probs=144.2

Q ss_pred             cccccccccC---ccchhHHHHHHHH-HHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc---------c----
Q 008957          106 SGIQGDFKLN---NFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---------F----  168 (547)
Q Consensus       106 ~~i~~~~~~s---~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------~----  168 (547)
                      -.+++.+-++   +..+.++-+..-+ +..+..++.+++++++.|.+++-.-+..+....+++++.         +    
T Consensus        47 R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~  126 (509)
T COG3202          47 RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEF  126 (509)
T ss_pred             HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHH
Confidence            3456666543   5556777777777 778899999999999999999888887777777776652         1    


Q ss_pred             -------------------cHHHHHHHHHHhhhhhhhhhh-cccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHh
Q 008957          169 -------------------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (547)
Q Consensus       169 -------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~  228 (547)
                                         |.|..-+.-++.-+-.+...+ .-.....|.+..+|-.|..++++.+.+++..++..+..+
T Consensus       127 ~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~  206 (509)
T COG3202         127 SRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSW  206 (509)
T ss_pred             HHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                               113332333333333333332 345567888888999999999999999999999888888


Q ss_pred             hcCCC-C---------chhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccc
Q 008957          229 VGSHL-N---------WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (547)
Q Consensus       229 l~~~~-g---------wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (547)
                      +.++. .         -+..+.+.++.++++..+..+.-+..........+++..                         
T Consensus       207 ~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~k-------------------------  261 (509)
T COG3202         207 LSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKK-------------------------  261 (509)
T ss_pred             HhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcc-------------------------
Confidence            87632 1         233444444444333333333221111110000000000                         


Q ss_pred             hhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhh-hccceeEeeccCch-hhH---hhhhh
Q 008957          299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY-WGPKAGYNIYHMSN-ADM---MFGGV  373 (547)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~-~~~---~~~~~  373 (547)
                          ++++       +...++.++++.+.++|.++.+.+...+++.+.+.+.. |-... +..+.... ...   .+...
T Consensus       262 ----k~~~-------k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~i-k~~~~~~~~~~~f~~~~~~~  329 (509)
T COG3202         262 ----KKKK-------KLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGI-KELYPTTNEYTAFMGRFQIW  329 (509)
T ss_pred             ----cccc-------cccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhcCChhHHHHHHHHHHHH
Confidence                0000       11123446778889999999988888888877666543 22211 11111111 111   11222


Q ss_pred             hccc-ccccceeeeeeeeccccc
Q 008957          374 TIVC-GIVGTISGGFILDQMGAT  395 (547)
Q Consensus       374 ~~~~-~~~~~~~~g~l~d~~~~~  395 (547)
                      .++. .++...+++-+.+|.|-.
T Consensus       330 tgvv~~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         330 TGVVSLVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HHHHHHHHHHhhhHHHHHHhhHH
Confidence            2333 445566777777877765

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.95  E-value=0.0004  Score=62.08  Aligned_cols=138  Identities=9%  Similarity=-0.094  Sum_probs=95.6

Q ss_pred             hhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhccccccccc
Q 008957          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  198 (547)
Q Consensus       119 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  198 (547)
                      .|.+.-+-.+-..+..+.+..+.||+.--+=+.+..++.+.+..+.+++.+.++=+++-.+..++.|.....-.++-+ .
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~  142 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-R  142 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-c
Confidence            456666666677777777888889876555556777888889999999999999888888888888866554433333 2


Q ss_pred             CCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC--CCCchhHHHHHHHHHHHHHHHHHhhccCcc
Q 008957          199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (547)
Q Consensus       199 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~--~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (547)
                      +++    ..++.++.+.+.+.++|..--..+.+  ...-|...++...+-++.+...++.++++.
T Consensus       143 Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pe  203 (409)
T KOG3880|consen  143 YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPE  203 (409)
T ss_pred             CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCc
Confidence            222    34566666666666676654444544  345788888888777777777777775533

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.92  E-value=0.00048  Score=67.68  Aligned_cols=52  Identities=12%  Similarity=-0.003  Sum_probs=36.5

Q ss_pred             cHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhh
Q 008957          169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  225 (547)
Q Consensus       169 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l  225 (547)
                      .++..++.-++.|++.+.......++.+ .+|++    .++.+..+.+++.+++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence            4677778888899999888877777766 55543    4666666666666665544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.86  E-value=0.00011  Score=72.40  Aligned_cols=124  Identities=11%  Similarity=0.033  Sum_probs=110.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhh-hhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFA-SLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  184 (547)
                      -.+...++++..+.+...+.......+++++.. .+...+|-|+++.+|++...+...+.+++++.|+++....+.++..
T Consensus       266 ~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~  345 (463)
T KOG2816|consen  266 LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG  345 (463)
T ss_pred             EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Confidence            456778999999999998888888888888887 7778889999999999999999999999999999999998887765


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhc
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG  230 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~  230 (547)
                       ...|...+.++.+.+++++|+++++.+...++..+++|.+-+.+.
T Consensus       346 -~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  346 -IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             -chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence             478889999999999999999999999999999999998776553

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.77  E-value=2.4e-05  Score=55.62  Aligned_cols=55  Identities=20%  Similarity=0.137  Sum_probs=48.3

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHH
Q 008957          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW  157 (547)
Q Consensus       103 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  157 (547)
                      |-+|...++.|+++.++|.+.++..+...++++++|.++||+|+++.++....++
T Consensus        21 Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   21 PFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3446677789999999999999999999999999999999999999887776554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.67  E-value=5.6e-05  Score=73.53  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=87.9

Q ss_pred             eehHHHHHHHHHHHHhhhcc---cc------HHHHHHHHHHhhhhhhhhhhcccccccccCCCC---CcchhhhHHHHhh
Q 008957          148 RLIGVGLSVWTFATAGCGSS---FD------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCI  215 (547)
Q Consensus       148 ~~l~~~~~~~~~~~~~~~~a---~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  215 (547)
                      |+++++.+++.+|.++..++   .+      .+.++++-.+.++|.|+.-|...++++|.++++   +|...+.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            46788899999999884433   22      367899999999999999999999999999876   3567888999999


Q ss_pred             hhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHh
Q 008957          216 PTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (547)
Q Consensus       216 ~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  255 (547)
                      ++|..++..+.+++.+++||.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998877665554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.51  E-value=0.00013  Score=69.58  Aligned_cols=114  Identities=12%  Similarity=0.051  Sum_probs=83.8

Q ss_pred             cccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHH--HHH---HHhhhccccHHHHHHHHHHhhhhhhh
Q 008957          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW--TFA---TAGCGSSFDFWSIAICRMLVGVGEAS  186 (547)
Q Consensus       112 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~--~~~---~~~~~~a~~~~~l~~~r~l~G~~~~~  186 (547)
                      +.-..++..+...+|.+|-.++.--...+  |+  |++.+.+.+-.  .+.   ....-+.++.|.+++.-+..|+..|.
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa  351 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA  351 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence            33345677888888888877764432221  33  34333333222  222   22233568999999999999999999


Q ss_pred             hhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhh
Q 008957          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (547)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  229 (547)
                      .++.....+.|-.++++|..+++....+-++|.+++.+++-.+
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.48  E-value=0.0011  Score=58.42  Aligned_cols=56  Identities=11%  Similarity=0.042  Sum_probs=38.7

Q ss_pred             CCcchhhhHHHHhhhhhhhhhhhhHHhh---c--CCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          202 PQKTAWLSMFYMCIPTGVALGYVYGGVV---G--SHLNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       202 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l---~--~~~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      |+|+....+...+.++|.++....--.-   .  ..-.|++++.+.+++.++-+++..++-
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifG   62 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFG   62 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5688888888888899887754432111   0  112499999999988877766666653

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.47  E-value=6.4e-05  Score=67.09  Aligned_cols=132  Identities=12%  Similarity=0.172  Sum_probs=76.2

Q ss_pred             HHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh---
Q 008957          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---  420 (547)
Q Consensus       345 ~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  420 (547)
                      ..+.+..|.|.+ ++..+.++.+. .+.....++..+| ++.|.+.|++|.+     ..+.++.+.......+....   
T Consensus        17 t~Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~-----~~l~iG~~~~~~GY~~~~l~~~~   89 (250)
T PF06813_consen   17 TTYTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW-----VVLLIGAVLGFVGYGLLWLAVSG   89 (250)
T ss_pred             cccchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHhC
Confidence            455566666654 45677776555 4444555666664 7889999999998     66666666666655544432   


Q ss_pred             ----hhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc
Q 008957          421 ----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  485 (547)
Q Consensus       421 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~  485 (547)
                          .+.|......++.+.+.............+.+ |++||++.|+.-...++-+++. ..+...+.+
T Consensus        90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~-t~i~~~~f~  156 (250)
T PF06813_consen   90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIF-TQIYSAFFG  156 (250)
T ss_pred             ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC-ccccCceehhhhHHHHhHHHHH-HHHHHHHcC
Confidence                12333333333333333333333333344555 5689999999987777734333 334434433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.19  E-value=0.0011  Score=64.75  Aligned_cols=136  Identities=12%  Similarity=0.091  Sum_probs=72.2

Q ss_pred             hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh----h-hHHHHHHHHHHHHHHHhhcCcc
Q 008957          369 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----S-SLYGFLALFTVGELLVFATQAP  443 (547)
Q Consensus       369 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~  443 (547)
                      ...+...++..++.++.|++..|.+.-+    +-++.+.+++.+..++....    + ..+..++.-++.|++.+ ....
T Consensus        75 ~viaa~slg~~i~~liF~~Ws~k~~~~k----~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~  149 (488)
T KOG2325|consen   75 LVIAASSLGHAIFSLIFGIWSNKTGSVK----KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAV  149 (488)
T ss_pred             HHHHHHHHHHHhcchhhcccccccCCcc----cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHH
Confidence            3445567888999999999999888521    34444555555554443221    2 23333444444443322 2223


Q ss_pred             ceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchh----hhhhc--------ccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          444 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV----GVLQD--------HVNNWRKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       444 ~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~----g~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  510 (547)
                      .-.++.+...++.|.++.+..+... .+|.++||.+.    +...+        .++.|..+-++++.+.++..+....
T Consensus       150 lR~Y~a~~s~~~dR~rA~a~~~~~~-vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~  227 (488)
T KOG2325|consen  150 LRAYIADASTVEDRPRAFAATSGGF-VLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF  227 (488)
T ss_pred             HHHHHHhccCccchHHHHHHhhhHH-HHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence            3444555455577777777764422 23555555433    22221        1234666667776666665555443

>PRK03612 spermidine synthase; Provisional

Probab=97.18  E-value=0.0027  Score=64.09  Aligned_cols=142  Identities=11%  Similarity=-0.085  Sum_probs=86.3

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHH---HHHHhh----hccccH-HHHHHHHHH
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT---FATAGC----GSSFDF-WSIAICRML  179 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~----~~a~~~-~~l~~~r~l  179 (547)
                      +.--+|-+..+.+.+.+++.+|.++|+.+++++.++.-++. ..+-+.+..   ++..+.    ++...+ ..++..-++
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  119 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-VAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL  119 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33446777888899999999999999999998874332222 111111111   111111    111111 123344566


Q ss_pred             hhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhc-CCCCchhHHHHHHHHHHHHHH
Q 008957          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAILMLPFAV  251 (547)
Q Consensus       180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~gwr~~f~~~~~~~~~~~~  251 (547)
                      .|+..|+..|....+..+... ++-|...|-.+....+|.++|.++.+++. ..+|-....++.+.+.+++++
T Consensus       120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            788888888877766654332 23567789999999999999999887654 456644444444555444443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.08  E-value=0.0069  Score=57.51  Aligned_cols=99  Identities=15%  Similarity=0.029  Sum_probs=52.1

Q ss_pred             hcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHH------HHHHhhhHHHHHHHHHHHHHHHhhcCccceee
Q 008957          374 TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL------TAFCLSSLYGFLALFTVGELLVFATQAPVNYV  447 (547)
Q Consensus       374 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (547)
                      ..+...+|.+...++-++-.|..    ......=.+....+.      ......+.+..+.+..+.++..+-.....+.+
T Consensus       292 fN~~d~vG~~~a~~~~~~~~r~l----~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~  367 (406)
T KOG1479|consen  292 FNVFDLIGSILAALLTWPDPRKL----TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMY  367 (406)
T ss_pred             hHHHHHhhhhhhhcccCCCCcee----hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehh
Confidence            56777788777666654433321    111111111111111      11223566667777777777776555566777


Q ss_pred             eecccCCcchhHHHHHHHHHHHhhcCCCcc
Q 008957          448 CLHSVKPSLRALSMAISTVSIHIFGDVPSS  477 (547)
Q Consensus       448 ~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~  477 (547)
                      ..+.++++++-.+..+.. +.-..|.+.|.
T Consensus       368 aPk~v~~~e~e~aG~~m~-~fl~~Gl~~G~  396 (406)
T KOG1479|consen  368 APKQVKPSEKEAAGNLMV-FFLVGGLALGS  396 (406)
T ss_pred             cCCCCChHHHHHHHHHHH-HHHHHHHHHhh
Confidence            777777766666555553 33332544444

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.89  E-value=0.00075  Score=69.73  Aligned_cols=128  Identities=14%  Similarity=0.077  Sum_probs=81.3

Q ss_pred             ccccceeeeeeeec-ccccchhHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHhhcCccceeee
Q 008957          378 GIVGTISGGFILDQ-MGATISNAFKLLSAATFLGAISCLTAFCLS--------SLYGFLALFTVGELLVFATQAPVNYVC  448 (547)
Q Consensus       378 ~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (547)
                      .-+..+++|+++|+ +|++     +.+..+.++..+...++....        .....+..+.+..++.+..-+...+..
T Consensus        36 ~yl~pilGg~iAD~~lG~~-----~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~  110 (654)
T TIGR00926        36 CYLTPLIGAIIADGWLGKF-----KTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFG  110 (654)
T ss_pred             HHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhh
Confidence            34456678888887 4555     555555555444444333221        112244555666666777777777777


Q ss_pred             ecccCCc---chhHHHHHHHHHHHhhcCCCccchhhhhhcccc------hhHHHHHHHHHHHHHHHHHHHHH
Q 008957          449 LHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN------NWRKTTLALTSIFFLAAGIWFVG  511 (547)
Q Consensus       449 ~~~~~~~---~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  511 (547)
                      .+.+.++   .+.....++....++ |+.+++.+.+++.+..+      +|..+|.+.+++.+++.+++...
T Consensus       111 gdqf~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g  181 (654)
T TIGR00926       111 GDQFEERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAG  181 (654)
T ss_pred             HhhcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence            7777653   466778888777788 88888888888875431      46677777777777666665543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.56  E-value=0.0053  Score=60.79  Aligned_cols=121  Identities=12%  Similarity=-0.009  Sum_probs=96.1

Q ss_pred             cCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhc----------cccHHHHHHHHHHhhhh
Q 008957          114 LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----------SFDFWSIAICRMLVGVG  183 (547)
Q Consensus       114 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------a~~~~~l~~~r~l~G~~  183 (547)
                      .++...|.+..+..++..++........-+..-|+++..+.++.++..+....          .++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            78888899998899999999999988888888889888888888776664321          12233334455666666


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  234 (547)
                      ....+-....+++|..|+..-|...+++.+..++|..++..++..+.+.++
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            667777788899999999999999999999999999999999988775443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.37  E-value=0.011  Score=56.55  Aligned_cols=154  Identities=10%  Similarity=-0.069  Sum_probs=94.8

Q ss_pred             cccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcC-CceehHHHHHHHHHHHHhh-h---ccccHHHHHHHHHHhhhhh
Q 008957          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGC-G---SSFDFWSIAICRMLVGVGE  184 (547)
Q Consensus       110 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~-~---~a~~~~~l~~~r~l~G~~~  184 (547)
                      ..-|.+....|++.....++..+++...|.+.||.. -|+++++......++.... .   .....+.++..-.+.|.+.
T Consensus       294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~  373 (480)
T KOG2563|consen  294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG  373 (480)
T ss_pred             ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence            334555578899999999999999999999999985 4556666666655553222 1   1223455677777888888


Q ss_pred             hhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC---chh-HHHHHHHHHHHHHHHHHhhccCc
Q 008957          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN---WRY-AFWGEAILMLPFAVLAFVIKPLQ  260 (547)
Q Consensus       185 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g---wr~-~f~~~~~~~~~~~~~~~~~~p~~  260 (547)
                      ....|...-+-.|..-|..-+.-.|+.....++=.++-..+-+...+..+   |.+ .-+......++.+++..++.|+.
T Consensus       374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y  453 (480)
T KOG2563|consen  374 TGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY  453 (480)
T ss_pred             cCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence            88999998888888544434444555544333322333333344444444   333 33444444455555666666664


Q ss_pred             cCC
Q 008957          261 LKG  263 (547)
Q Consensus       261 ~~~  263 (547)
                      .+.
T Consensus       454 ~R~  456 (480)
T KOG2563|consen  454 RRL  456 (480)
T ss_pred             HhH
Confidence            443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.20  E-value=0.0039  Score=58.01  Aligned_cols=142  Identities=15%  Similarity=0.068  Sum_probs=81.1

Q ss_pred             eccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 008957          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVF  438 (547)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (547)
                      .++.+..+. .+.....+.+.+...+.|.+.||+|||     +..+..+++-...|+.- ..++.+..++.=++.|....
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk-----~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTS  136 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK-----KACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATS  136 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHH
Confidence            356664443 233333455666677789999999999     77777777777777543 34566666666667777766


Q ss_pred             hcCccceeeeecc-----cCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccch-hHHHHHHHHHHHHHHHHH
Q 008957          439 ATQAPVNYVCLHS-----VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-WRKTTLALTSIFFLAAGI  507 (547)
Q Consensus       439 ~~~~~~~~~~~~~-----~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~  507 (547)
                      ..+...-+++..+     +|++..+...+......+.+-++.+..+..++.+..+. ...+|.....+.+++.++
T Consensus       137 LLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~  211 (354)
T PF05631_consen  137 LLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL  211 (354)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            6666554444333     33344454454432122221223344445555554442 356777777666655554

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.09  E-value=0.00091  Score=67.70  Aligned_cols=57  Identities=7%  Similarity=0.067  Sum_probs=0.0

Q ss_pred             eeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHH
Q 008957          356 AGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (547)
Q Consensus       356 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (547)
                      -.+++++.+.... .+.+..-++.++..++..++.+|..|-     +++..+.++.++.+++.
T Consensus        28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrp-----rwig~g~~~~~~g~~l~   85 (539)
T PF03137_consen   28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRP-----RWIGIGALLMGLGSLLF   85 (539)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-----ceeeecHHHHHHHHHHH
Confidence            4666677775444 555666688888877777777764443     45555555555444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=95.99  E-value=0.17  Score=47.30  Aligned_cols=122  Identities=12%  Similarity=0.014  Sum_probs=67.1

Q ss_pred             HHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhh------hcc------ccHHHHHHHHHHhh----hhhhhhhhc
Q 008957          127 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC------GSS------FDFWSIAICRMLVG----VGEASFISL  190 (547)
Q Consensus       127 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~------~~a------~~~~~l~~~r~l~G----~~~~~~~~~  190 (547)
                      .....+...+.|...|+..|+|++...+++.-++.+++      .+.      .+++.+..+-++.-    ++.=.....
T Consensus        73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~  152 (503)
T KOG2601|consen   73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG  152 (503)
T ss_pred             HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34456677788999999999999888776543333322      222      24554444333332    222111222


Q ss_pred             ccccccccC----CCCCcchhh---hHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHH
Q 008957          191 AAPFIDDNA----PVPQKTAWL---SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  248 (547)
Q Consensus       191 ~~~~i~~~~----~~~~r~~~~---~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~  248 (547)
                      ...+-.||.    ..+.+....   +..-..-..--.+.|++.|.+.+..+-|..-.+.++.+.+
T Consensus       153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence            222223443    222233322   4444444455678899999998888878766666655555

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.98  E-value=0.024  Score=54.39  Aligned_cols=123  Identities=12%  Similarity=-0.026  Sum_probs=75.6

Q ss_pred             cceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHH
Q 008957          381 GTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALS  460 (547)
Q Consensus       381 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  460 (547)
                      .-+....+.|.++-|     ++++...+...+...++.+.++....-+.-++.|.....- ...++++-..+++++--++
T Consensus        57 ~l~~vflltd~l~Yk-----pviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~v  130 (412)
T PF01770_consen   57 FLLPVFLLTDYLRYK-----PVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKV  130 (412)
T ss_pred             HHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHH
Confidence            344556778999998     7887777777777777777777777777777776666532 2233344444677766677


Q ss_pred             HHHHHHHHHhhcCCCccchhhhhhcc-cchhHHHHHHHHHHHHHHHHHHHH
Q 008957          461 MAISTVSIHIFGDVPSSPLVGVLQDH-VNNWRKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       461 ~g~~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  510 (547)
                      .+......-. |..++..++..+... ..+|....++......++.++.++
T Consensus       131 ts~~raa~l~-g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  131 TSYTRAATLV-GRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7766544444 666666666555542 234545545555444455554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.96  E-value=0.018  Score=56.23  Aligned_cols=119  Identities=16%  Similarity=-0.017  Sum_probs=91.1

Q ss_pred             cccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhh---c---cc----cHHHHHHHHHHhh
Q 008957          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---S---SF----DFWSIAICRMLVG  181 (547)
Q Consensus       112 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~---a~----~~~~l~~~r~l~G  181 (547)
                      -|+++..+|..-+...+....+.+.+.++.+|+|..|.-+++...-..+..++.   +   .+    +...++.+-.+.=
T Consensus       288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR  367 (432)
T PF06963_consen  288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR  367 (432)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence            399999999999999999999999999999999999888877765444333322   1   12    2334444444444


Q ss_pred             hhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhc
Q 008957          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG  230 (547)
Q Consensus       182 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~  230 (547)
                      +|.=++.....-++.|..|+++||...|.-....++-.++-..++-.+.
T Consensus       368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            5665677778889999999999999999999999888877776665444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.94  E-value=0.049  Score=52.29  Aligned_cols=145  Identities=10%  Similarity=-0.014  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHhhhccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHH
Q 008957          336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  415 (547)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (547)
                      ....+...++...-..++|.|+++.+-.+..........-+.+.+..++.|..+||...|..+||+.+....+...+..+
T Consensus        38 ~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~  117 (498)
T KOG0637|consen   38 ASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLF  117 (498)
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHh
Confidence            33344445556666778888888765444333333333446667778889999998766666666777666665555555


Q ss_pred             HHHHhhh-----------------HHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhH-HHHHHHHHHHhhcCCCcc
Q 008957          416 TAFCLSS-----------------LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL-SMAISTVSIHIFGDVPSS  477 (547)
Q Consensus       416 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~g~~~~~~~~~g~~~~~  477 (547)
                      +......                 ....++.+.+.=+.......+.-++..+...++.+.+ +++.+..+..+ |+.+|-
T Consensus       118 Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av-GnvLGY  196 (498)
T KOG0637|consen  118 LIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV-GNVLGY  196 (498)
T ss_pred             hhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh-cceeee
Confidence            4433211                 1112222233333444677788888888877765555 88777655555 777665


Q ss_pred             chhh
Q 008957          478 PLVG  481 (547)
Q Consensus       478 ~~~g  481 (547)
                      .+.+
T Consensus       197 ~~g~  200 (498)
T KOG0637|consen  197 ALGS  200 (498)
T ss_pred             eccc
Confidence            4444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.077  Score=51.98  Aligned_cols=104  Identities=13%  Similarity=0.193  Sum_probs=80.4

Q ss_pred             HHHHHHhhhhhhhhhhh---hhcCCceehHHHHHHHHHHHHhhhcc------------------ccHHHHHHHHHHhhhh
Q 008957          125 AFMVGLLVASPIFASLA---KSHNPFRLIGVGLSVWTFATAGCGSS------------------FDFWSIAICRMLVGVG  183 (547)
Q Consensus       125 ~~~~~~~~~~~~~g~l~---dr~Grr~~l~~~~~~~~~~~~~~~~a------------------~~~~~l~~~r~l~G~~  183 (547)
                      ...+|..+++.+.+.+.   +++||++++.++.++..++.++.-..                  +++...++.-++.|++
T Consensus       287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~  366 (461)
T KOG3098|consen  287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG  366 (461)
T ss_pred             HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence            34444555556666666   46899999999999888888776432                  3566778888999999


Q ss_pred             hhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhh
Q 008957          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (547)
Q Consensus       184 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  229 (547)
                      .+......+.++++.+ +++|..+.++...-..++..++.......
T Consensus       367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999999999999 55699999999888888887766655443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.79  E-value=0.0019  Score=60.77  Aligned_cols=102  Identities=15%  Similarity=-0.005  Sum_probs=2.8

Q ss_pred             hhhhcccccccceeeeeeeecc-cccchhHHHHHHHH--HHHHHHHHHHH----------HHhhhHHHHHHHHHHHHHHH
Q 008957          371 GGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSAA--TFLGAISCLTA----------FCLSSLYGFLALFTVGELLV  437 (547)
Q Consensus       371 ~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  437 (547)
                      ..++.++-.+|+.+.++..-+. .+|     ++....  =++....+++.          ...++.+..+++.++.++..
T Consensus       188 fl~Fn~gD~iGR~l~~~~~~~~~~~~-----~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TN  262 (309)
T PF01733_consen  188 FLLFNLGDFIGRFLASWPRWPGPSPR-----WLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTN  262 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhcchhcceeEecccccc-----cHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHcc
Confidence            4567789999999888753211 122     222111  11111111111          12345566667777777777


Q ss_pred             hhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccc
Q 008957          438 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  478 (547)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~  478 (547)
                      +-..+..+....+.+++++|..+..+....... |-.+|..
T Consensus       263 Gyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~-Gl~~Gs~  302 (309)
T PF01733_consen  263 GYLSTLAMMYAPKSVSPEERELAGSVMSFFLSF-GLFIGSV  302 (309)
T ss_dssp             ----HHHH---------------------------------
T ss_pred             chhhhceeeeCCCcCCHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            766666777777888887777776666544444 6666553

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.78  E-value=0.072  Score=52.58  Aligned_cols=108  Identities=12%  Similarity=0.017  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhhhcCCc--eehHHHH--HHHHHHHHhhh---------ccccHHHHHHHHHHhhhhhhh
Q 008957          120 GVLSSAFMVGLLVASPIFASLAKSHNPF--RLIGVGL--SVWTFATAGCG---------SSFDFWSIAICRMLVGVGEAS  186 (547)
Q Consensus       120 g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~--~~~~~~~~~~~---------~a~~~~~l~~~r~l~G~~~~~  186 (547)
                      -.....|.+|-.+|..+..+.. .-++|  ++.+.+.  +++..-.++|.         +-++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4556677788888777554331 11233  3332221  22333333333         225667788889999999999


Q ss_pred             hhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHh
Q 008957          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (547)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~  228 (547)
                      ....+..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988877643

>PF12832 MFS_1_like: MFS_1 like family

Probab=95.59  E-value=0.006  Score=43.38  Aligned_cols=60  Identities=15%  Similarity=0.172  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHhhhccceeEeeccCchhh-Hhhhhhhcccccccceeeeeeeecccccc
Q 008957          336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATI  396 (547)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  396 (547)
                      -...++.......+.-+.|.|+++ .+.++.. ..+..+..+..+++.++.|.++||.++++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~   66 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK   66 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence            344666677777888889999987 4555444 45667778899999999999999999983

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.37  E-value=0.098  Score=51.85  Aligned_cols=55  Identities=7%  Similarity=-0.045  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhhcCc-cceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhh
Q 008957          429 LFTVGELLVFATQA-PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  484 (547)
Q Consensus       429 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~  484 (547)
                      +....-.......+ .....+.|...+++..+-.++.....++ |.++++.+..++.
T Consensus       134 FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganl-g~i~sg~~~~~~~  189 (472)
T TIGR00769       134 FYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANV-ALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            33333333334444 3455666666778899999999877777 8888888877776

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.64  E-value=0.017  Score=47.49  Aligned_cols=101  Identities=7%  Similarity=-0.054  Sum_probs=70.8

Q ss_pred             hhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecc
Q 008957          372 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS  451 (547)
Q Consensus       372 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (547)
                      .+......++.++.+.+.+++|.|     +.++++.+.-.+.. .....++.+..+....+.|++.+..+.....++.+.
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K-----~sm~lg~~~y~~y~-~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPK-----WSMILGSLGYAIYI-ASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhH-----HHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            344455566677788889999998     66666555554333 333455667777788888888888888877777777


Q ss_pred             cCCcchhHHHHHHHHHHHhhcCCCccch
Q 008957          452 VKPSLRALSMAISTVSIHIFGDVPSSPL  479 (547)
Q Consensus       452 ~~~~~r~~~~g~~~~~~~~~g~~~~~~~  479 (547)
                      ..++.+++-.++...+.+. +.++|..+
T Consensus       118 s~~~~~~~~~~ifw~i~~~-s~i~G~~~  144 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQS-SLIFGNLF  144 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHH-HHHHHHHH
Confidence            7778888888888766665 55555533

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.55  E-value=0.18  Score=47.14  Aligned_cols=112  Identities=17%  Similarity=0.107  Sum_probs=64.5

Q ss_pred             hhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHhhcCccceee
Q 008957          370 FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS--LYGFLALFTVGELLVFATQAPVNYV  447 (547)
Q Consensus       370 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  447 (547)
                      ......+...++.++.|.+.||.|||     +.+...........++.....+  .+...+.....+.+.+...+.....
T Consensus        44 ~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          44 LLSAFFLGYAIGSLLAGPLGDRYGRR-----KVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHhhhhhhccccccch-----HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            33444556666668999999999887     3443333222222222222222  3444444444555555566666667


Q ss_pred             eecccCC-cchhHHHHHHHHHHHhhcCCCccchhhhhhcc
Q 008957          448 CLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  486 (547)
Q Consensus       448 ~~~~~~~-~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  486 (547)
                      ..+..++ +.|+...+.........|..++|.+.+.+...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777665 57888888876533333767777666666554

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.54  E-value=0.18  Score=52.11  Aligned_cols=150  Identities=15%  Similarity=0.104  Sum_probs=79.8

Q ss_pred             ceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh-------------
Q 008957          355 KAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-------------  420 (547)
Q Consensus       355 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  420 (547)
                      .-.++.++.+.... .+....-++..+..++..+...|..|-     +++..+.++.++..++..+.             
T Consensus       121 ttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrP-----r~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~  195 (735)
T KOG3626|consen  121 TTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRP-----RWIGIGLVLMGLGSLLFALPHFFSGPYEYELEV  195 (735)
T ss_pred             hhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcc-----ceeeechhHHHHHHHHHhChHHhcCcchhhhhh
Confidence            34556666664333 444555577777666666666665554     45544444444444443221             


Q ss_pred             -----------------------------------hhHHHHHHHHHHHHHHHhhcCcc----ceeeeecccCCcchhHHH
Q 008957          421 -----------------------------------SSLYGFLALFTVGELLVFATQAP----VNYVCLHSVKPSLRALSM  461 (547)
Q Consensus       421 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~~~~  461 (547)
                                                         .+.....+++++..+..+..-.+    ..+++-+.+.++..+.-.
T Consensus       196 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYl  275 (735)
T KOG3626|consen  196 IKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYL  275 (735)
T ss_pred             hhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHH
Confidence                                               00111333444444444444444    444455555556677777


Q ss_pred             HHHHHHHHhhcCCCccchhhhhhcc------------------cchhHHHHHHHHHHHHHHHHHHHH
Q 008957          462 AISTVSIHIFGDVPSSPLVGVLQDH------------------VNNWRKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       462 g~~~~~~~~~g~~~~~~~~g~l~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~  510 (547)
                      |+..+ ..++|-++|-.+++.+...                  .|.|...|++.+.+.++..+.++.
T Consensus       276 gi~~~-~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~  341 (735)
T KOG3626|consen  276 GILYS-MAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF  341 (735)
T ss_pred             HHHHH-HHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            77753 3333655555444444321                  255767788888877777766663

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=91.95  E-value=0.21  Score=48.54  Aligned_cols=86  Identities=15%  Similarity=0.055  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHhhcCccceeeeecccCCc---chhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHH
Q 008957          424 YGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  500 (547)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  500 (547)
                      ....+.+.+..++.++.=+.+.....+.++++   .|.+....+....++ |..+++.+.+++.+..| |...|.+.++.
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~-G~~~~~~~~~~i~~~~~-~~~~f~i~~~~  111 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI-GSLFSPTLVPYIQQNYG-WFLGFGIPAIG  111 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHCS--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh-hhHhhcccchhhccccc-hhhhhhHHHHH
Confidence            35566667777888888888888888887764   566777778888888 98889999999998866 88889888888


Q ss_pred             HHHHHHHHHHH
Q 008957          501 FFLAAGIWFVG  511 (547)
Q Consensus       501 ~~~~~~~~~~~  511 (547)
                      .+++.+.++..
T Consensus       112 ~~~~~~~f~~~  122 (372)
T PF00854_consen  112 MLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHhC
Confidence            87777766543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=90.99  E-value=1.9  Score=43.21  Aligned_cols=40  Identities=10%  Similarity=-0.046  Sum_probs=28.6

Q ss_pred             eeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc
Q 008957          445 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  485 (547)
Q Consensus       445 ~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~  485 (547)
                      ...+.+....++..+-.++.....++ |.+++..+..++.+
T Consensus       166 W~fAN~itt~~eAKRfYpl~g~gani-gli~sG~~~~~~~~  205 (491)
T PF03219_consen  166 WGFANEITTVEEAKRFYPLFGLGANI-GLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            44445555568899999999887777 77777666666665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=90.65  E-value=0.069  Score=50.30  Aligned_cols=108  Identities=16%  Similarity=0.079  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhh-cCCceehHHHH--HHHHHHHHhh----------hccccHHHHHHHHHHhhhhhhhh
Q 008957          121 VLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGL--SVWTFATAGC----------GSSFDFWSIAICRMLVGVGEASF  187 (547)
Q Consensus       121 ~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~--~~~~~~~~~~----------~~a~~~~~l~~~r~l~G~~~~~~  187 (547)
                      .....|.++-.+|....++.-=+ -.+|++.+.+.  +++.-..++|          .+-+|-+.+++..++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            34667888888888887764211 13444443322  2222222222          12346677888899999999999


Q ss_pred             hhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHh
Q 008957          188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (547)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~  228 (547)
                      ...+..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999898888888888877643

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=90.53  E-value=0.58  Score=45.94  Aligned_cols=62  Identities=15%  Similarity=0.041  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHhhhccceeEe---eccCchhhH-hhhhhhc-ccccccceeeeeeeecccccch
Q 008957          336 VLGYIAYNFVIGAYSYWGPKAGYN---IYHMSNADM-MFGGVTI-VCGIVGTISGGFILDQMGATIS  397 (547)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~-~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~  397 (547)
                      .+.+++++...+...--.|.++++   ....+..+. .+...+. +=-+-+.++=....+|+|||+.
T Consensus         6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKS   72 (544)
T PF13000_consen    6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKS   72 (544)
T ss_pred             HHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcch
Confidence            344444444443333567777777   222222111 1111111 2223344455666788999974

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=89.77  E-value=1.2  Score=42.69  Aligned_cols=107  Identities=19%  Similarity=0.063  Sum_probs=76.3

Q ss_pred             hhHHHHH-HHHHHhhhhhhhhhhhhhcCCceehHHHHH-HHHHHHHh-------hhccccHHHHHHHHHHhhhhhhhhhh
Q 008957          119 DGVLSSA-FMVGLLVASPIFASLAKSHNPFRLIGVGLS-VWTFATAG-------CGSSFDFWSIAICRMLVGVGEASFIS  189 (547)
Q Consensus       119 ~g~~~s~-~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~-~~~~~~~~-------~~~a~~~~~l~~~r~l~G~~~~~~~~  189 (547)
                      .-.+..+ |.+.-.+|.+.+.++-++ +||+..+..++ ...+-.+.       ..+-.+-+.+++.-.+.|+..|=...
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts  362 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS  362 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence            3444556 888888887777766665 34544443332 11222222       13346778889999999999999999


Q ss_pred             cccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhH
Q 008957          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG  226 (547)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~  226 (547)
                      ....+..+-.+++++..+-.+.......|...|..++
T Consensus       363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999998888888888888888777765

>PRK03612 spermidine synthase; Provisional

Probab=89.31  E-value=0.98  Score=45.89  Aligned_cols=58  Identities=9%  Similarity=-0.054  Sum_probs=30.3

Q ss_pred             HHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhc-ccch
Q 008957          430 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-HVNN  489 (547)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~-~~~~  489 (547)
                      .++.+++.+...|...-+.... ..+..+...|-.+....+ |+++|+++.+++.- ..|.
T Consensus       117 ~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntl-Ga~~G~l~~~~vLlp~lG~  175 (521)
T PRK03612        117 VLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYL-GALVGGLAFPFLLLPRLGL  175 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhH-HHHHHHHHHHHHHHHhcch
Confidence            3344555666655444333321 122234555555444444 88888888777653 4553

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.35  E-value=4  Score=36.68  Aligned_cols=139  Identities=14%  Similarity=0.039  Sum_probs=87.8

Q ss_pred             chhHHHHHHHHHHhhhhhhhhhhhhhcCCc--eehHHHHHHHHHHHHhhh----cccc---HHHHHHHHHHhhhhhhhhh
Q 008957          118 QDGVLSSAFMVGLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCG----SSFD---FWSIAICRMLVGVGEASFI  188 (547)
Q Consensus       118 ~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~----~a~~---~~~l~~~r~l~G~~~~~~~  188 (547)
                      -.|.+.+.+++...+|+-+..++..|-..|  ..+.+..++.++...+..    .+++   ...=+++-.+.-.+.|..+
T Consensus       283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw  362 (454)
T KOG4332|consen  283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW  362 (454)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence            359999999999999999999998876555  344444444443333222    2221   2222444455566788899


Q ss_pred             hcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 008957          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (547)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  256 (547)
                      |....+=+.+.|+++|...+.++..-.++=..++-..--.-....+-|..|-++.+...+..+....+
T Consensus       363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~~~L  430 (454)
T KOG4332|consen  363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQRRL  430 (454)
T ss_pred             hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999988888765554322221110000112356788888887777665555443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=88.20  E-value=0.24  Score=35.66  Aligned_cols=75  Identities=16%  Similarity=0.106  Sum_probs=49.6

Q ss_pred             HHHHhhhccceeEeeccCch-hhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008957          346 IGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  424 (547)
Q Consensus       346 ~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (547)
                      -+.+.-.+|...++ .+.+. ....+.+.+.++..+|.+...++.++..++     ..+..+.+......+.....++.+
T Consensus         8 RFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen    8 RFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR-----RLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             HHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHHHHHHHHhchH
Confidence            34445566765555 55664 444777888899999999998887775555     566666666666666666655554


Q ss_pred             HH
Q 008957          425 GF  426 (547)
Q Consensus       425 ~~  426 (547)
                      .+
T Consensus        82 ~w   83 (85)
T PF06779_consen   82 LW   83 (85)
T ss_pred             HH
Confidence            43

Note that many members are hypothetical proteins.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=87.58  E-value=0.18  Score=45.84  Aligned_cols=120  Identities=9%  Similarity=0.046  Sum_probs=81.3

Q ss_pred             cccccC-ccchhHHHHHHHHHHhhhhhhhhhhhhhc-CCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhh
Q 008957          110 GDFKLN-NFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (547)
Q Consensus       110 ~~~~~s-~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~  187 (547)
                      +.+..+ +.|.-|....|.+|-.+..--.-..--++ ---.++-.-.+++.+...+..+.+++|..++.-+.-|+-.|..
T Consensus       280 ~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGas  359 (409)
T KOG3880|consen  280 HGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGAS  359 (409)
T ss_pred             cCCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchH
Confidence            344443 34688888888887655432211111010 0001112223444455556678899999999999999988889


Q ss_pred             hhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhh
Q 008957          188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (547)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l  229 (547)
                      ++...--+.+-.++++|-.+++....+-.+|..++.+++-.+
T Consensus       360 YVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  360 YVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            988888888888899999999999999999988887776443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=87.15  E-value=1.3  Score=40.98  Aligned_cols=75  Identities=7%  Similarity=0.112  Sum_probs=57.5

Q ss_pred             HHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCC
Q 008957          126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV  201 (547)
Q Consensus       126 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  201 (547)
                      ..+..+.++++.+.+..++|.|+++.++...+...-. .=+-+.+..++-.-...|++.+..+..--+++++.-..
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~  141 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN  141 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence            3444556666667899999999999998888765432 22346778888899999999999999888888877543

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=84.42  E-value=0.029  Score=49.21  Aligned_cols=43  Identities=9%  Similarity=-0.030  Sum_probs=30.4

Q ss_pred             hHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCch
Q 008957          323 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  365 (547)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  365 (547)
                      +...|++-.+....+.+.+.-...+.-..|+|.|..+..+.+.
T Consensus       194 W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~q  236 (412)
T KOG4830|consen  194 WTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQ  236 (412)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHH
Confidence            4455666667777776776666677777888988888777664

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=81.59  E-value=31  Score=33.63  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=15.3

Q ss_pred             hhhhHhhcccchhHHHHHHHHHHH
Q 008957          320 SQDTKVLLQEKVYVVNVLGYIAYN  343 (547)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~  343 (547)
                      ....+..+++|..+...++.....
T Consensus       235 ~~~~~~~~~nP~~~a~~lgli~~~  258 (385)
T PF03547_consen  235 KKSILKLFKNPPLIAIILGLIIGL  258 (385)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHH
Confidence            345566778888877666554443

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=80.26  E-value=3.9  Score=38.91  Aligned_cols=64  Identities=14%  Similarity=0.056  Sum_probs=31.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeee-----cccccch
Q 008957          330 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILD-----QMGATIS  397 (547)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~  397 (547)
                      +.+..+.+.+..+........ ..|.+++. .+.+.... .+....+-  .---++...++|     |+|||+.
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~Grrks  100 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKS  100 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccc
Confidence            344444444555555444444 78888874 33332222 22211110  112345566677     9999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	547
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2cfq_A	417	Lactose permease; transport, transport mechanism,	3e-04
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	7e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 62/479 (12%), Positives = 131/479 (27%), Gaps = 58/479 (12%)

Query: 40  LAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDK 99
              A    R  + +  PT      +  L IF       Y+ R   A              
Sbjct: 4   FKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGY-AAYYLVRKNFA-------------- 48

Query: 100 GICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF 159
               +   +  +   +    G   S   +    +  I  S++   NP   +  GL +   
Sbjct: 49  ---LAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104

Query: 160 ATAGCG----SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI 215
                G    ++     + +   L G  +          +       ++   +S++    
Sbjct: 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164

Query: 216 PTGVALGY-VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI--KPLQLKGFAPAESGKA 272
             G  +   ++   +    +W  A +  A   +  A+ AF +     Q  G  P E  K 
Sbjct: 165 NVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN 224

Query: 273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY 332
                 +E +E               A +  ++ +  ++ L                   
Sbjct: 225 DYPDDYNEKAEQ-----------ELTAKQIFMQYVLPNKLL------------------- 254

Query: 333 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI-VCGIVGTISGGFILDQ 391
               +  +    +      W P     + H +     +        GI GT+  G++ D+
Sbjct: 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 314

Query: 392 MGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS 451
           +      A  +        A          +    +    V   L++     +    L  
Sbjct: 315 VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 374

Query: 452 VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 510
                   +   + +  ++ G V +S +VG   D    W    + +     LA  +  V
Sbjct: 375 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIV 432

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 56/392 (14%), Positives = 106/392 (27%), Gaps = 128/392 (32%)

Query: 7   NRSDDVVDVDQN----SQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFT 62
           N  + V+++ Q       PN   +   S ++  R   +   +   R L +  P       
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---IHSIQAELRRLLKSKP------Y 243

Query: 63  PKRLLVIFCVINMLNYV-DRGAIASNGVNGSQR---TCDDKGICTS-GSGIQGDFKLNNF 117
              LLV       L  V +  A   N  N S +   T   K +     +       L++ 
Sbjct: 244 ENCLLV-------LLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 118 QDGVLSSAFMVGLL--VASPIFASL---AKSHNPFR--LIGVGLSVWTFATAGCGSSFDF 170
               L+   +  LL          L     + NP R  +I   +           +++D 
Sbjct: 295 SMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-------ATWDN 346

Query: 171 WSIAICRMLVGVGEAS------------FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG 218
           W    C  L  + E+S            F  L+  F   +A +P          + +   
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-F-PPSAHIPTIL-------LSL--- 394

Query: 219 VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV 278
                                W +    +  + +  V+  L        +  K       
Sbjct: 395 --------------------IWFD----VIKSDVMVVVNKLHKYSLV-EKQPK------- 422

Query: 279 SEGSEASNLNDHVSEDISDQASERSI--KSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV 336
                  ++   +  ++  +        +SI +    N    F  D  +           
Sbjct: 423 ---ESTISIPS-IYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLD------ 470

Query: 337 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM 368
             Y         YS+ G       +H+ N + 
Sbjct: 471 -QYF--------YSHIG-------HHLKNIEH 486

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 9/130 (6%)

Query: 148 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT-- 205
             + +  ++ +    G   +     + I + L        +     +I     V      
Sbjct: 290 NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI 349

Query: 206 -AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264
                 F+  +   +    V  G +   + ++ A+    ++ L F +++       L G 
Sbjct: 350 YLVCFCFFKQL--AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT----LSGP 403

Query: 265 APAESGKAQV 274
            P    + QV
Sbjct: 404 GPLSLLRRQV 413

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 4/154 (2%)

Query: 124 SAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG 183
            A+++   V+   +  ++       +I VG+S++  AT    ++     +     + G+G
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMG 101

Query: 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA 243
                 +A     D     Q     S+  M I     L  + GG++ +  NWR  +    
Sbjct: 102 TGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL--- 158

Query: 244 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS 277
             +L             +    P ++ + +++ S
Sbjct: 159 -FLLVLCAGVTFSMARWMPETRPVDAPRTRLLTS 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	547
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.96
2xut_A	524	Proton/peptide symporter family protein; transport	99.95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.49
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.36
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.34
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.31
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.14
2xut_A	524	Proton/peptide symporter family protein; transport	99.11
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.95

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=4.9e-40  Score=328.64  Aligned_cols=396  Identities=13%  Similarity=0.085  Sum_probs=307.2

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  142 (547)
                      .++.+..+++..+..+++...++.                 .+|.+.+++ .+..+.|++.+++.++..++++++|+++|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d   87 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFAL-----------------AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD   87 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHH-----------------HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            355677777788888887777764                 448999999 99999999999999999999999999999


Q ss_pred             hcCCceehHHHHHHHHHHHHhhhc----cccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhh
Q 008957          143 SHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG  218 (547)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~----a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  218 (547)
                      |+|||++++++.++.+++.+++++    ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|
T Consensus        88 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  167 (451)
T 1pw4_A           88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  167 (451)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999    9999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHhhcCCCC-chhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccccccccc
Q 008957          219 VALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD  297 (547)
Q Consensus       219 ~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (547)
                      .+++|++++++.+..| ||+.|++.++++++..++.++..||+++....+++++...      .       .+  ++.  
T Consensus       168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~--~~~--  230 (451)
T 1pw4_A          168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN------D-------YP--DDY--  230 (451)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC------C----------------
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc------c-------cc--ccc--
Confidence            9999999999888888 9999999999988888877777777544322111110000      0       00  000  


Q ss_pred             chhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcc
Q 008957          298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV  376 (547)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~  376 (547)
                        +.+.++..       ..++  ...+.++++|.++...+..++.......+..+.|.|+++..+.+.... .+..+..+
T Consensus       231 --~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  299 (451)
T 1pw4_A          231 --NEKAEQEL-------TAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY  299 (451)
T ss_dssp             -----------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred             --hhhhhccc-------cccc--chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence              00000000       0000  114677889999999998999888889999999999998777776443 45566778


Q ss_pred             cccccceeeeeeeecc--cccchhHHHHHHHHHHHHH-HHHHHHHHh--hhHHHHHHHHHHHHHHHhhcCccceeeeecc
Q 008957          377 CGIVGTISGGFILDQM--GATISNAFKLLSAATFLGA-ISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHS  451 (547)
Q Consensus       377 ~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (547)
                      +.+++.++.+++.||+  ++|     +.+..+..+.. +.+++....  .+.+...+..++.+++.+...+.......+.
T Consensus       300 ~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  374 (451)
T 1pw4_A          300 AGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL  374 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            8999999999999999  887     55554444444 333333332  2455555666666676666666677788888


Q ss_pred             cCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          452 VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       452 ~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (547)
                      .|++.|+++.|+.+...+.+|..++|.+.|++.+..| +...+++.+++.+++.++.+.
T Consensus       375 ~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          375 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             hchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999877776477889999999999876 778888888777766665553

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=9.2e-39  Score=318.09  Aligned_cols=367  Identities=17%  Similarity=0.207  Sum_probs=291.0

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  142 (547)
                      .++.+..+++.++...++....+.                 .+|.+.+++|++..+.|++.+++.+++.++++++|+++|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d   86 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDI-----------------LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK   86 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHH-----------------HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            345666667777777777666653                 448899999999999999999999999999999999999


Q ss_pred             hcCCceehHHHHHHHHHHHHhh---hccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhh
Q 008957          143 SHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV  219 (547)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  219 (547)
                      |+|||++++++.++.+++.+++   ++++|++.++++|++.|++.+...+...++++|++|+++|++++++.+.+.++|.
T Consensus        87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  166 (438)
T 3o7q_A           87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA  166 (438)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999   8999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHhhc-CCCC-------------------------chhHHHHHHHHHHHHHHHHHhhc-cCccCCCCCCCcccc
Q 008957          220 ALGYVYGGVVG-SHLN-------------------------WRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKA  272 (547)
Q Consensus       220 ~~g~~l~~~l~-~~~g-------------------------wr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~  272 (547)
                      ++++++++.+. +..+                         ||+.|++.+++.++..++.++.. ||..+..+++++   
T Consensus       167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---  243 (438)
T 3o7q_A          167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK---  243 (438)
T ss_dssp             HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS---
T ss_pred             HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc---
Confidence            99999999988 6655                         99999988887777666555432 332111000000   


Q ss_pred             ccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhh
Q 008957          273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  352 (547)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (547)
                                                                 .++...++++++++|.++...+..++.......+..+
T Consensus       244 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (438)
T 3o7q_A          244 -------------------------------------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSY  280 (438)
T ss_dssp             -------------------------------------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                       0011145677889999999999888888888889999


Q ss_pred             ccce-eEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008957          353 GPKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF  430 (547)
Q Consensus       353 ~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (547)
                      .|.| +++..+.+.... ....+..++.+++.++.+++.||+++|     +.+..+.++..+.+++....++.+. .+..
T Consensus       281 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  354 (438)
T 3o7q_A          281 LIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVG-LIAL  354 (438)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHH-HHHH
T ss_pred             HHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHH-HHHH
Confidence            9999 888777775443 455666788899999999999999998     6666666666666555555555443 3444


Q ss_pred             HHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHH
Q 008957          431 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  501 (547)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  501 (547)
                      .+.+++.+..++.......+.+|++ ++.+.++.. ... +|..++|.+.|++.|..|+++..+++.+++.
T Consensus       355 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  422 (438)
T 3o7q_A          355 TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            6666777777777777778888766 888888775 444 4888999999999998776777777655443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.9e-37  Score=313.24  Aligned_cols=423  Identities=14%  Similarity=0.098  Sum_probs=269.7

Q ss_pred             HHHHHHHHHHHhhcccccccccccCCccccCCCCcccccccccccccc--------CccchhHHHHHHHHHHhhhhhhhh
Q 008957           67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKL--------NNFQDGVLSSAFMVGLLVASPIFA  138 (547)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--------s~~~~g~~~s~~~~~~~~~~~~~g  138 (547)
                      .++.+++.+..++|...++.                 ++|.+.++++.        ++.+.|++.+++.+|..+|++++|
T Consensus        14 ~~~a~lg~~~~Gyd~~~i~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G   76 (491)
T 4gc0_A           14 TLVATLGGLLFGYDTAVISG-----------------TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGG   76 (491)
T ss_dssp             HHHHHHHHHHHHHHHHGGGG-----------------THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445666777889888875                 34777776643        345679999999999999999999


Q ss_pred             hhhhhcCCceehHHHHHHHHHHHHhhh------------------ccccHHHHHHHHHHhhhhhhhhhhcccccccccCC
Q 008957          139 SLAKSHNPFRLIGVGLSVWTFATAGCG------------------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP  200 (547)
Q Consensus       139 ~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  200 (547)
                      +++||+|||++++++.+++.+++++++                  +++|+++++++|+++|++.|...+....+++|+.|
T Consensus        77 ~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p  156 (491)
T 4gc0_A           77 YCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP  156 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999988                  47899999999999999999999999999999999


Q ss_pred             CCCcchhhhHHHHhhhhhhhhhhhhHHhhcC--------CCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCcccc
Q 008957          201 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  272 (547)
Q Consensus       201 ~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~--------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  272 (547)
                      +++|++..++.+.+..+|.++++.++..+..        ..+||+.+.+..++.++..+ ..+..||+++....+.+.+.
T Consensus       157 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~  235 (491)
T 4gc0_A          157 AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQ  235 (491)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHH
T ss_pred             HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhH
Confidence            9999999999999999999999988876653        23588888877766655444 34455776654322211111


Q ss_pred             ccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHH-HHHHHHHHHHHHHHhh
Q 008957          273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSY  351 (547)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  351 (547)
                      ..+..+               ........++........ ....++. ......++.+..... ....+......+.+..
T Consensus       236 a~~~l~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (491)
T 4gc0_A          236 AEGILR---------------KIMGNTLATQAVQEIKHS-LDHGRKT-GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLY  298 (491)
T ss_dssp             HHHHHH---------------HHHHHHHHHHHHHHHHHH-HHHHHHH-TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhHH---------------HhcCCchhHHHHHHHHHH-HHhhhhh-hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHh
Confidence            100000               000000000000000000 0000000 111222333333333 3333333444556667


Q ss_pred             hccceeEeeccCchhhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHHHh----hhHHHHH
Q 008957          352 WGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSLYGFL  427 (547)
Q Consensus       352 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  427 (547)
                      |.|.+.+.....+........+..+..+++.++++++.||+|||     +.++.+.....+.++.....    ...+..+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  373 (491)
T 4gc0_A          299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYTQAPGIVAL  373 (491)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence            77766665444443334445566778888999999999999999     55544444433333222111    1223333


Q ss_pred             HHHHHHHHHHhhcCccc-eeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccc-----hhHHHHHHHHHHH
Q 008957          428 ALFTVGELLVFATQAPV-NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN-----NWRKTTLALTSIF  501 (547)
Q Consensus       428 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~-----~~~~~~~~~~~~~  501 (547)
                      +..++...+....+.+. +.+..|.+|++.|+++.|+.+...++ ++++++.+.+.+.+...     .+...+++++++.
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~-~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~  452 (491)
T 4gc0_A          374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWL-ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  452 (491)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHH-HHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            33344444444444443 45667778889999999999888877 77777877777654321     1224566666665


Q ss_pred             HHHHHHHHHHHhhcc-cccccchhhhhhcccc
Q 008957          502 FLAAGIWFVGIFLKS-IDKFNEDGENQISLDS  532 (547)
Q Consensus       502 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  532 (547)
                      +++.++.+  .++|| |+|++||+++..+++.
T Consensus       453 ~~~~i~~~--~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          453 VLAALFMW--KFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             HHHHHHHH--HHCCCCTTCCHHHHGGGTC---
T ss_pred             HHHHHHHH--heecCCCCCCHHHHHHHhCCCC
Confidence            55544332  35677 8999999887765433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=1.1e-35  Score=289.47  Aligned_cols=355  Identities=13%  Similarity=0.077  Sum_probs=274.8

Q ss_pred             HHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCce
Q 008957           69 IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR  148 (547)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~  148 (547)
                      .+++..+...++......                 .+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~   66 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIP-----------------AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP   66 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHH-----------------HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHhh-----------------hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            445555555555555543                 448899999999999999999999999999999999999999999


Q ss_pred             ehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHh
Q 008957          149 LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (547)
Q Consensus       149 ~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~  228 (547)
                      +++++.++.+++.++.++++|++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.++++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  146 (375)
T 2gfp_A           67 VILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL  146 (375)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhccccc
Q 008957          229 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG  308 (547)
Q Consensus       229 l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (547)
                      +.++.|||+.|++.+++.++..+..++..||+++..++  +++                                     
T Consensus       147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------------------------------------  187 (375)
T 2gfp_A          147 LDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP--RTR-------------------------------------  187 (375)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--CCC-------------------------------------
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--ccc-------------------------------------
Confidence            99988999999999888777666555555653322100  000                                     


Q ss_pred             chhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeee
Q 008957          309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGF  387 (547)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~  387 (547)
                                ..+++++++++|.++...+..++.......+..+.|.|+++..+.+.... .......++.+++.++.++
T Consensus       188 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  257 (375)
T 2gfp_A          188 ----------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR  257 (375)
T ss_dssp             ----------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             ----------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      00223456678888888888888888888999999999988767665433 4455666788888888888


Q ss_pred             eeecccccchhHHHHHHHHH-HHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHH
Q 008957          388 ILDQMGATISNAFKLLSAAT-FLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  464 (547)
Q Consensus       388 l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~  464 (547)
                      +.||.+++     ....... .......+....  .++.+...+..++.+++.+...+.......+..| +.|+++.|+.
T Consensus       258 l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~  331 (375)
T 2gfp_A          258 PNKRFSTL-----MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALV  331 (375)
T ss_dssp             TTTHHHHH-----HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHH
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHH
Confidence            88887763     2222211 111111111111  2345555566677777788888888888888876 8999999999


Q ss_pred             HHHHHhhcCCCccchhhhhhcccchhHHHHHHH
Q 008957          465 TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  497 (547)
Q Consensus       465 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  497 (547)
                      +...+. |..++|.+.|.+.+. +++...+++.
T Consensus       332 ~~~~~~-g~~~~~~~~g~l~~~-~~~~~~~~~~  362 (375)
T 2gfp_A          332 GGLQNI-GSGVLASLSAMLPQT-GQGSLGLLMT  362 (375)
T ss_dssp             HHHHHH-HHHCCSTTCTHHHHH-HHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHhcC-CcccHHHHHH
Confidence            887777 888899999999875 3465555543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=4e-34  Score=288.86  Aligned_cols=395  Identities=10%  Similarity=-0.014  Sum_probs=258.3

Q ss_pred             ccccCccchhHHHHHHHHHHhhhhhhhhhhhhh-cCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhh
Q 008957          111 DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  189 (547)
Q Consensus       111 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~  189 (547)
                      |+|++..+.+++.+++.++..++++++|+++|| +|||++++++.++.+++.+++++++|++.++++|+++|++.+...+
T Consensus        48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  127 (491)
T 4aps_A           48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP  127 (491)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence            399999999999999999999999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCC--cchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCC
Q 008957          190 LAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  267 (547)
Q Consensus       190 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  267 (547)
                      ...++++|++|+++  |+.++++++.+.++|..++|.+++.+.+..|||+.|++.++..++..++.++..|+..+...++
T Consensus       128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (491)
T 4aps_A          128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR  207 (491)
T ss_dssp             HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred             hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence            99999999999988  7778888999999999999999999999899999999998877776666655544433221111


Q ss_pred             CccccccccccccCCcCCCC------------Ccccccccccchhh--hhcccccchhhhhhhhhhhhhhHhhcccchhH
Q 008957          268 ESGKAQVVASVSEGSEASNL------------NDHVSEDISDQASE--RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  333 (547)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (547)
                      ++.+.. .++..+..+....            ......+..+....  ...............++.........+....+
T Consensus       208 ~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (491)
T 4aps_A          208 PTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI  286 (491)
T ss_dssp             CSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred             CCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            110000 0000000000000            00000000000000  00000000000000000000011111222334


Q ss_pred             HHHHHHHHHHHHHHHHhhhccceeEeeccCch-hhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHH
Q 008957          334 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  412 (547)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  412 (547)
                      ...+..++..........+.|.|.++..+.+. ..........++.+++.++.+++.||++||+......+..+..+..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~  366 (491)
T 4aps_A          287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL  366 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence            44444555555566666777777776655552 23344456667777888889999999999854332333344444444


Q ss_pred             HHHHHHHhh---------hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhh
Q 008957          413 SCLTAFCLS---------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  483 (547)
Q Consensus       413 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l  483 (547)
                      .+++.....         +.+...+..++.+++.+...+....+..+..|++.|+++.|+.+...++ |.+++|.+.+++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~i~~~~~~~~  445 (491)
T 4aps_A          367 SFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSV-GSALNAQLVTLY  445 (491)
T ss_dssp             HHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHH-HHHHHHHHGGGG
T ss_pred             HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            433333221         4455666667777777777888888889999999999999999877777 888999999988


Q ss_pred             hcccchhHHHHHHHHHHHHHHHHHHH
Q 008957          484 QDHVNNWRKTTLALTSIFFLAAGIWF  509 (547)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (547)
                      .+.  ++...+.+.+++.+++.++.+
T Consensus       446 ~~~--~~~~~~~~~~~~~~~~~~~~~  469 (491)
T 4aps_A          446 NAK--SEVAYFSYFGLGSVVLGIVLV  469 (491)
T ss_dssp             GGS--STTHHHHHTHHHHHHHHHHHH
T ss_pred             hcc--cHHHHHHHHHHHHHHHHHHHH
Confidence            875  355667776666655555444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.96  E-value=1.3e-30  Score=256.58  Aligned_cols=353  Identities=13%  Similarity=0.031  Sum_probs=226.9

Q ss_pred             ccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHH---HhhhccccHH-HHHHHHHHhhh
Q 008957          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAICRMLVGV  182 (547)
Q Consensus       107 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~a~~~~-~l~~~r~l~G~  182 (547)
                      .+++++|++..+.|++.+.+.+++.++++++|+++||+|||++++++.++++++.   ....+++... .++..+++.|+
T Consensus        33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T 2cfq_A           33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI  112 (417)
T ss_dssp             HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667799999999999999999999999999999999999999999888776532   2123332221 23456777777


Q ss_pred             hhhhhhhcccccccccCCC--CCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccCc
Q 008957          183 GEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  260 (547)
                      +.+...+.....+.++.++  ++|+...+....+..+|..++|.+++++.+ .+||+.|++.+++.++..+..++..||+
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~  191 (417)
T 2cfq_A          113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence            6666555555555555543  356778888888899999999999998876 5899999988776544433333332332


Q ss_pred             cCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHH
Q 008957          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (547)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (547)
                      ++.   .++++..            +.     +          .++           ....++++++++|.++...+..+
T Consensus       192 ~~~---~~~~~~~------------~~-----~----------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  230 (417)
T 2cfq_A          192 PSS---ATVANAV------------GA-----N----------HSA-----------FSLKLALELFRQPKLWFLSLYVI  230 (417)
T ss_dssp             SCS---SCSSSSS------------SS-----C----------CCC-----------CCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccc---ccccccc------------cc-----c----------ccc-----------ccHHHHHHHhcCCchhhHHHHHH
Confidence            110   0000000            00     0          000           00123456778888877666555


Q ss_pred             HHHHHHHHHhhhccceeEeeccCc---hhh-HhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHH
Q 008957          341 AYNFVIGAYSYWGPKAGYNIYHMS---NAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  416 (547)
Q Consensus       341 ~~~~~~~~~~~~~p~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (547)
                      .....+..+..+.|.|+.+.++..   ... .....+..++.+++.++.+++.||++||     +.+..+..+..+..++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~~~~~~~~  305 (417)
T 2cfq_A          231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIG  305 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHH
Confidence            544455555556676665443321   111 2333455567788889999999999998     5555555444444333


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHH-HHHHHhhcCCCccchhhhhhcccchhHHHHH
Q 008957          417 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS-TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  495 (547)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~-~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  495 (547)
                      ....++.+..++..++.+++.....+....+..+..|++.|+++.+.. +...++ |.+++|.+.|++.+..| +...|.
T Consensus       306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l-g~~~gp~l~G~l~~~~g-~~~~f~  383 (417)
T 2cfq_A          306 SSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL-AMIFMSVLAGNMYESIG-FQGAYL  383 (417)
T ss_dssp             HTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH-HHHHHTHHHHTHHHHSH-HHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH-HHHHhhhhHHHHHHhcC-cHHHHH
Confidence            333344444444444444444444444556777888889999999985 555555 88889999999998765 667777


Q ss_pred             HHHHHHHHHHHHH
Q 008957          496 ALTSIFFLAAGIW  508 (547)
Q Consensus       496 ~~~~~~~~~~~~~  508 (547)
                      +.+++.+++.++.
T Consensus       384 ~~~~~~l~~~~~~  396 (417)
T 2cfq_A          384 VLGLVALGFTLIS  396 (417)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.95  E-value=8.5e-29  Score=251.93  Aligned_cols=153  Identities=14%  Similarity=0.112  Sum_probs=139.1

Q ss_pred             cccccccc------cCccchhHHHHHHHHHHhhhhhhhhhhhhhc-CCceehHHHHHHHHHHHHhhhccc-cHHHHHHHH
Q 008957          106 SGIQGDFK------LNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICR  177 (547)
Q Consensus       106 ~~i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r  177 (547)
                      +.+.+++|      ++..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+++.++.++++ +++.++++|
T Consensus        37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (524)
T 2xut_A           37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL  116 (524)
T ss_dssp             HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45677888      9999999999999999999999999999999 999999999999999999999999 999999999


Q ss_pred             HHhhhhhhhhhhcccccccccCCCCCcchhhhH---HHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHH
Q 008957          178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (547)
Q Consensus       178 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  254 (547)
                      ++.|++.+...+...+++.|++|+++|+++.+.   ++.+.++|.+++|.+++++.+..|||+.|++.+++.++..++.+
T Consensus       117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999877666   99999999999999999999888999999999888766555544


Q ss_pred             hhcc
Q 008957          255 VIKP  258 (547)
Q Consensus       255 ~~~p  258 (547)
                      +..|
T Consensus       197 ~~~~  200 (524)
T 2xut_A          197 LGRK  200 (524)
T ss_dssp             SSSS
T ss_pred             Hhcc
Confidence            4333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.49  E-value=2.5e-14  Score=142.21  Aligned_cols=150  Identities=11%  Similarity=-0.036  Sum_probs=133.6

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhc--CCceehHHHHHHHH-HHHHhhhcc--ccHHHHHHHHHHhhh
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGVGLSVWT-FATAGCGSS--FDFWSIAICRMLVGV  182 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~a--~~~~~l~~~r~l~G~  182 (547)
                      +.+.+|.+..+.+++.+.+.++..++.++.|++.||+  |||+.+.++.++.. ++.++..+.  .+.+.+.+..++.|+
T Consensus       279 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  358 (451)
T 1pw4_A          279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF  358 (451)
T ss_dssp             BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence            4445899999999999999999999999999999999  99999888887776 777777766  478888888999999


Q ss_pred             hhhhhhhcccccccccCCCCCcchhhhHHHHhhhh-hhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       183 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      +.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||++.|++.+++.++..++.++..
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888899999999999999999999999999 9999999999999999999999999988887777666554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.36  E-value=4.3e-13  Score=131.57  Aligned_cols=145  Identities=8%  Similarity=0.010  Sum_probs=126.1

Q ss_pred             CccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhhhhccccc
Q 008957          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF  194 (547)
Q Consensus       115 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~  194 (547)
                      +....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566888888888999999999999999999999999999998888888888888888888888888877777777889


Q ss_pred             ccccCCCCCcchhhhH-HHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          195 IDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       195 i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      +.|.+|++.|+.+.++ ++....+|..++|.++|++.+..|++..|.+.++++++..++.+++.||
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            9999999999999998 5888889999999999999988889999999988888777766655554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.34  E-value=8.4e-12  Score=125.37  Aligned_cols=151  Identities=14%  Similarity=0.054  Sum_probs=125.6

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehH-----HHHHHHHHHHHhhhccc---------cHHHH
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-----VGLSVWTFATAGCGSSF---------DFWSI  173 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~a~---------~~~~l  173 (547)
                      ..+.++.+..+.+++.+...++..++.++.|++.||+|||+...     .+.++.+++.++..+..         +.+.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (491)
T 4aps_A          310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL  389 (491)
T ss_dssp             HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred             HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence            34446666678899999999999999999999999999998766     78888888877776643         77888


Q ss_pred             HHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHH
Q 008957          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  253 (547)
Q Consensus       174 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~  253 (547)
                      ++.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+ .++.+.|++.++.+++..++.
T Consensus       390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999899999999999999999999999999999999999999988875 467888999988888877777


Q ss_pred             HhhccC
Q 008957          254 FVIKPL  259 (547)
Q Consensus       254 ~~~~p~  259 (547)
                      +++.++
T Consensus       469 ~~~~~~  474 (491)
T 4aps_A          469 VFLSKR  474 (491)
T ss_dssp             HHC---
T ss_pred             HHHHHH
Confidence            766554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.31  E-value=6.7e-12  Score=124.07  Aligned_cols=138  Identities=9%  Similarity=-0.127  Sum_probs=121.2

Q ss_pred             cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhhhh
Q 008957          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (547)
Q Consensus       108 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~  187 (547)
                      +.+.+|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++.. ++.|++.+..
T Consensus       286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~  364 (438)
T 3o7q_A          286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ  364 (438)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence            455569999999999999999999999999999999999999999999999999999988887765554 8889999999


Q ss_pred             hhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCC-chhHHHHHHHHHHH
Q 008957          188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLP  248 (547)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~  248 (547)
                      .+...++..|.+|++ |+.+.++.. ...+|..++|.+.+++.+..| ++..|++.++..++
T Consensus       365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_dssp             HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            999999999999976 888888877 566999999999999999888 99999987654443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.14  E-value=8.5e-11  Score=118.03  Aligned_cols=156  Identities=8%  Similarity=-0.031  Sum_probs=118.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhcc-----ccHHHHHH-HHHH
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAI-CRML  179 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~-~r~l  179 (547)
                      +.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+..     ++...+.. .-+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4gc0_A          301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  380 (491)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            56677777777777777888889999999999999999999999999988888777665432     22222222 2222


Q ss_pred             hhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhhhhhhhhhHHhhcC------CCCchhHHHHHHHHHHHHHHHH
Q 008957          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLA  253 (547)
Q Consensus       180 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~------~~gwr~~f~~~~~~~~~~~~~~  253 (547)
                      .+.+. ...+....+.+|.+|.+.|+.++++......+|..+++.+.+.+.+      ..++.+.|++.++++++..++.
T Consensus       381 ~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  459 (491)
T 4gc0_A          381 AAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM  459 (491)
T ss_dssp             HHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            22222 2446677899999999999999999999999999988887766543      3467788999999999999999


Q ss_pred             HhhccCccC
Q 008957          254 FVIKPLQLK  262 (547)
Q Consensus       254 ~~~~p~~~~  262 (547)
                      +++.||+..
T Consensus       460 ~~~~PETkg  468 (491)
T 4gc0_A          460 WKFVPETKG  468 (491)
T ss_dssp             HHHCCCCTT
T ss_pred             HheecCCCC
Confidence            999998643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.11  E-value=4.9e-11  Score=120.86  Aligned_cols=173  Identities=12%  Similarity=0.015  Sum_probs=131.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhccceeEeecc------CchhhH-hhhhhhcccccccceeeeeeeecc-cccchhHH
Q 008957          329 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH------MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAF  400 (547)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~  400 (547)
                      ++.++...+..++..+.++.+..++|.|+.+..+      .+.... .+.....++..++.++.|+++||+ |||     
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----   85 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----   85 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence            3566667777777788888888888888877666      665443 555677788899999999999999 998     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHH---HHHHHHhhcCCCc
Q 008957          401 KLLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI---STVSIHIFGDVPS  476 (547)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~---~~~~~~~~g~~~~  476 (547)
                      +.+..+.++..+..++....+ +.+..++..++.+++.+...+....++.+.+|++.|+++.+.   .+...++ |.+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~~g  164 (524)
T 2xut_A           86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF-GSFFA  164 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH-HHHHH
Confidence            677666666666666666666 777777777888888888888888899999999999776665   7666666 88889


Q ss_pred             cchhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008957          477 SPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  508 (547)
Q Consensus       477 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  508 (547)
                      |.+.+++.+..+ |+..|++.+++.++..++.
T Consensus       165 ~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          165 SLSMPLLLKNFG-AAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc-HHHHHHHHHHHHHHHHHHH
Confidence            999999988765 8888887777655544443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.95  E-value=5.4e-11  Score=114.92  Aligned_cols=163  Identities=14%  Similarity=0.064  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH
Q 008957          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (547)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  413 (547)
                      ..+..++.......+....|.+.++ .+.+.... .......++..++.++.|+++||+|||     +.+..+..+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~   78 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR-----PVILVGMSIFMLA   78 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHH
Confidence            3444455555555566666665554 55554433 555677888899999999999999999     5565666666666


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHH
Q 008957          414 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  493 (547)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  493 (547)
                      .++....++.+..++..++.+++.+...+....+..+..|+++|+++.+..+..... |..++|.+.+++.+..+ |+..
T Consensus        79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~  156 (375)
T 2gfp_A           79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILV-SPLLAPLIGGLLDTMWN-WRAC  156 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHH-HHHHHHHHHHHSSCHHH-HHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhcc-HHHH
Confidence            666666677777777788888888888888888888888889999999999877776 88999999999988754 8888


Q ss_pred             HHHHHHHHHHHH
Q 008957          494 TLALTSIFFLAA  505 (547)
Q Consensus       494 ~~~~~~~~~~~~  505 (547)
                      +.+.++..++..
T Consensus       157 ~~~~~~~~~~~~  168 (375)
T 2gfp_A          157 YLFLLVLCAGVT  168 (375)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            877666654443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	547
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-16
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 78.6 bits (192), Expect = 4e-16
 Identities = 48/452 (10%), Positives = 115/452 (25%), Gaps = 53/452 (11%)

Query: 65  RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSS 124
           ++ +         Y+ R   A                         +   +    G   S
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFALAMPYLV------------------EQGFSRGDLGFALS 66

Query: 125 AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC----GSSFDFWSIAICRMLV 180
              +    +  I  S++   NP   +  GL +             ++     + +   L 
Sbjct: 67  GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 126

Query: 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAF 239
           G  +          +       ++   +S++      G  +   ++   +    +W  A 
Sbjct: 127 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 186

Query: 240 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA 299
           +  A   +  A+ AF +                                         + 
Sbjct: 187 YMPAFCAILVALFAFAMMRDT----------------------------PQSCGLPPIEE 218

Query: 300 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 359
            +         +   +L+      + +L  K+     +  +    +      W P     
Sbjct: 219 YKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE 278

Query: 360 IYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF 418
           + H +         +    GI GT+  G++ D++      A  +        A       
Sbjct: 279 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 338

Query: 419 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP 478
              +    +    V   L++     +    L          +   + +  ++ G V +S 
Sbjct: 339 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398

Query: 479 LVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 510
           +VG   D    W    + +     LA  +  V
Sbjct: 399 IVGYTVDFF-GWDGGFMVMIGGSILAVILLIV 429

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 16/175 (9%), Positives = 47/175 (26%), Gaps = 5/175 (2%)

Query: 101 ICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFA 160
                +      +      G +++   +           +         + +  ++ +  
Sbjct: 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302

Query: 161 TAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGV 219
             G   +     + I + L        +     +I     V        + +       +
Sbjct: 303 IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM 362

Query: 220 ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQV 274
               V  G +   + ++ A+    ++ L F +++       L G  P    + QV
Sbjct: 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT----LSGPGPLSLLRRQV 413

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	547
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.48
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.37

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.8e-41  Score=330.90  Aligned_cols=399  Identities=13%  Similarity=0.077  Sum_probs=298.8

Q ss_pred             chhHHHHHHHHHHHHhhcccccccccccCCccccCCCCccccccccccccccCccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008957           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (547)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  142 (547)
                      +|.++..++++++..++++.+++..                 .|.+. |+|+|.+|+|++.+++.+++.++++++|+++|
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D   84 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSD   84 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHH-----------------HHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777888889999998888753                 37665 58999999999999999999999999999999


Q ss_pred             hcCCceehHHHHHHHHHHHHhhhcc----ccHHHHHHHHHHhhhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhhh
Q 008957          143 SHNPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG  218 (547)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~a----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  218 (547)
                      |+|||+++.++.++.+++.++++++    ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus        85 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  164 (447)
T d1pw4a_          85 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  164 (447)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             HcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchh
Confidence            9999999999999999999998876    478899999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHhhcCC-CCchhHHHHHHHHHHHHHHHHHhhccCccCCCCCCCccccccccccccCCcCCCCCccccccccc
Q 008957          219 VALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD  297 (547)
Q Consensus       219 ~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (547)
                      .++++.+++.+... .+||+.|++.+++.++..++.+++.++.+.....+..++...                   +..+
T Consensus       165 ~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~  225 (447)
T d1pw4a_         165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-------------------DYPD  225 (447)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-------------------C---
T ss_pred             hhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-------------------hccc
Confidence            99999988876653 479999999999999888888888776544322211111100                   0000


Q ss_pred             chhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHHHHHHHHHHHHHhhhccceeEeeccCchhhH-hhhhhhcc
Q 008957          298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV  376 (547)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~  376 (547)
                      ...++.+         +.........+..++++.++......++.....+.+..+.|.|+.+..+.+.... ....+..+
T Consensus       226 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (447)
T d1pw4a_         226 DYNEKAE---------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY  296 (447)
T ss_dssp             -------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred             chhhccc---------cccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchh
Confidence            0000000         0000111335667888999998888888888889999999999998888876444 45566778


Q ss_pred             cccccceeeeeeeecccccchhHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCC
Q 008957          377 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF--CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  454 (547)
Q Consensus       377 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (547)
                      +.+++.+++|++.||++++.......+.  ..+.....+...  ...+.+...+..++.+++.....+.......+..|+
T Consensus       297 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  374 (447)
T d1pw4a_         297 AGIPGTLLCGWMSDKVFRGNRGATGVFF--MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK  374 (447)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCHHHHHHHH--HHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred             hhhhhhhhhhhhhhhccccccccccchh--HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            8899999999999999987532111111  111111111111  123455555666666666666666677778888899


Q ss_pred             cchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 008957          455 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  510 (547)
Q Consensus       455 ~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (547)
                      +.|+++.|+.+...+..|.+++|.+.|++.|..| +...+++.+++.+++.++...
T Consensus       375 ~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         375 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888787566778999999999876 667777777666665555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=8e-29  Score=241.57  Aligned_cols=355  Identities=13%  Similarity=0.012  Sum_probs=239.4

Q ss_pred             cc-cccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHH----HHHHHHh
Q 008957          106 SG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI----AICRMLV  180 (547)
Q Consensus       106 ~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l----~~~r~l~  180 (547)
                      |. +.+++|+|++++|++.+++.+++.++++++|+++||+|||++++++.++..++.++..+..+....    ++.+++.
T Consensus        31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (417)
T d1pv7a_          31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG  110 (417)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHT
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            44 677899999999999999999999999999999999999999999999999999888887766554    4455555


Q ss_pred             hhhhhhhhhcccccccccCCC--CCcchhhhHHHHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhcc
Q 008957          181 GVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p  258 (547)
                      +.+.+...........+..++  +++.+..+........|..+++.+++.+.+. +|++.+........+..++.++..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  189 (417)
T d1pv7a_         111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKT  189 (417)
T ss_dssp             TTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhc
Confidence            555555444444444433332  3456677888888899999999999988764 5666777776666666666666666


Q ss_pred             CccCCCCCCCccccccccccccCCcCCCCCcccccccccchhhhhcccccchhhhhhhhhhhhhhHhhcccchhHHHHHH
Q 008957          259 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  338 (547)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (547)
                      +.+....++++++...                              +.           .........++++..+.....
T Consensus       190 ~~~~~~~~~~~~~~~~------------------------------~~-----------~~~~~~~~~~~~~~~~~~~~~  228 (417)
T d1pv7a_         190 DAPSSATVANAVGANH------------------------------SA-----------FSLKLALELFRQPKLWFLSLY  228 (417)
T ss_dssp             CSCSSSCSSHHHHSCC------------------------------CC-----------CCHHHHHHHTTSSHHHHHHHH
T ss_pred             ccccchhhhhhhhhhc------------------------------cc-----------ccccccccccccccccchhhh
Confidence            5443322111111000                              00           000111222233333332222


Q ss_pred             HHHHHHHHHH----HhhhccceeEeeccCch-hhHhhhhhhcccccccceeeeeeeecccccchhHHHHHHHHHHHHHHH
Q 008957          339 YIAYNFVIGA----YSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (547)
Q Consensus       339 ~~~~~~~~~~----~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  413 (547)
                      ..........    ...+.+.+..+ .+.+. ..........++..++..+.+++.||.+++     +.+..+..+..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~  302 (417)
T d1pv7a_         229 VIGVSCTYDVFDQQFANFFTSFFAT-GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVR  302 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhhccccccccccccc-cccchhhhcccccccccccccchhhhhhhhcccccc-----cchhhhHHHHHHh
Confidence            2222222222    22222222222 12222 122334555677888889999999999998     6777777777777


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhcCccceeeeecccCCcchhHHHHHHHHHHHhhcCCCccchhhhhhcccchhHHH
Q 008957          414 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  493 (547)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  493 (547)
                      .+.....++.+..++..++.+++.+...+....+..+.+|++.|+++.|+.....+.+|.+++|.+.|++.|..| ++..
T Consensus       303 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~  381 (417)
T d1pv7a_         303 IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGA  381 (417)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred             hhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHH
Confidence            777777778888888888888888888888888899999999999999986544443488889999999999876 7788


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008957          494 TLALTSIFFLAAGIWF  509 (547)
Q Consensus       494 ~~~~~~~~~~~~~~~~  509 (547)
                      +++.+++.++..++..
T Consensus       382 ~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         382 YLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8887777666555544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=3.5e-15  Score=143.84  Aligned_cols=154  Identities=7%  Similarity=-0.018  Sum_probs=139.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHHHHHhhhccccHHHHHHHHHHhhhhhh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~  185 (547)
                      +...++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  327 (417)
T d1pv7a_         248 TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP  327 (417)
T ss_dssp             TTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHH
Confidence            33445556677788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccccccccCCCCCcchhhhHH-HHhhhhhhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhccC
Q 008957          186 SFISLAAPFIDDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (547)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  259 (547)
                      ...+...+++.|.+|+++|+++.++. +....+|..++|.++|++.+..||++.|++.+++.++..++.++++++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999985 566779999999999999999999999999999998888888777754

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=2.6e-13  Score=132.19  Aligned_cols=152  Identities=11%  Similarity=-0.038  Sum_probs=123.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHhhhhhhhhhhhhhcCCceehHHHHHHHHH---HHHhh--hccccHHHHHHHHHHh
Q 008957          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF---ATAGC--GSSFDFWSIAICRMLV  180 (547)
Q Consensus       106 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~---~~~~~--~~a~~~~~l~~~r~l~  180 (547)
                      ..+.+.++.+..+.++..+.+.++..++.++.|++.||++||+......+...+   +.++.  ....+.+..+++-++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (447)
T d1pw4a_         274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI  353 (447)
T ss_dssp             HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred             hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            456677899999999999999999999999999999999988754443333222   22222  2346778888888899


Q ss_pred             hhhhhhhhhcccccccccCCCCCcchhhhHHHHhhhh-hhhhhhhhHHhhcCCCCchhHHHHHHHHHHHHHHHHHhhc
Q 008957          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (547)
Q Consensus       181 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  257 (547)
                      |++.+...+....+..|.+|++.|+++.|+.+....+ |.+++|++.+++.++.||+..|++.++..++..++.+++.
T Consensus       354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888999999999999999999999887776 5677899999999999999999998888777777666655