Citrus Sinensis ID: 008964

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
Protein Sequence
MAKDNDLINGEDHRDEKRVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIKLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMINGENVGVARQFMDLGQAGKDDHKVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPDDGQRAKKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFLGLLSSLGLEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGNNDHQNHNGNNNSPSTARNTSEKIEQS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEEEEEcccccccccccHHHHcccccccccccccccccccccccccccccHHHccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHcccEEEccccccccEEEEcccccccHHHHHEEcccccEEEEEEEcccccccccHcHHcccccccccHHcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
makdndlingedhrdekrvvnemnffahddsqhhhlkasddrqetfrvdrvktesssafdeHEERIKLDintglnlstanttnersrnvdtgissrniehkkhdKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAltqleptgklagstagremingenvGVARQFMdlgqagkddhkvslcnssedttrfREFKIVEsmearsddeivalddhqmgkrntsdrterevtpddgqrakkvprfnnnnssrdVEQAASQSQTTSMIRRARVSVRARseasmisdgcqwrkygqkmakgnpcprayyrctmasgcpvrkqvqrcsQDRTILMTtyegnhnhplppaamsmASTTSAAASMLLsgsmpsadglimspnllaknnvlpfspssaslsasapfptvtldlthspnplqfqrplgqfhftspnnlphnfvpmshglgpalidnnyqSNFLGLLSslglehpydsaQNRIQAASLISDNISAATaaitsdpgFTAALVSAIASIignndhqnhngnnnspstarntseKIEQS
Flexible Loop (DISEMBL)
makdndlingedhrdeKRVVNEMNFFahddsqhhhlkasddrqetfRVDRVktesssafdeheerikldintglnlstanttnersrnvdtgissrniehkkhdkkIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMINGENVGVARQFMDLGqagkddhkvslcnssedttrfrefkivesmearsddeivalddhqmgkrntsdrterevtpddgqrakkvprfnnnnssrdveqaasqsqttsmirrarvsvrarseasmisdgcqwrkygqKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFLGLLSSLGLEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGnndhqnhngnnnspstarntsekieqs
Low Complexity Region (SEG)
MAKDNDLINGEDHRDEKRVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIKLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMINGENVGVARQFMDLGQAGKDDHKVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPDDGQRAKKVPRFNNNNSSRDVEQAASQSQTTSMIrrarvsvrarsEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPpaamsmasttsaaasmllsgsmpsaDGLIMSPNLLAKNNVlpfspssaslsasapfpTVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFlgllsslglEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIgnndhqnhngnnnSPSTARNTSEKIEQS
Disordered region (IsUnstruct)
**********************************************************************************************************IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLA*******MINGENVGVARQFMD******************************************************************************************************************DGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTY***********************************************************************************PLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFLGLLSSLGLEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIG***************************
Disordered Region (DISOPRED)
********************NEMNFF******************************************DINTGLN*******************************************************NQVNNDYRALQLHL*******************************************************************************************************************************************RARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHP***********************************************************************************************************************************************SAATAAITSDPGFTAALVSAIAS******************************
Disordered Region (DISEMBL)
MAKDNDLINGEDHRDEKRVVNEMNFFAHDD*********************KTESSSAFDEHEERIKLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMINGENVGVARQFMDLGQAGKDDHKVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQ********************RAKKVPRFNNN***********************************SDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFLGLLSSLGLEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGNNDHQNHNGNN****************
Disordered Region (DISPRO)
****************KRVVNEMNFFAH**************************************KLDINTGLNLSTAN***********************DKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLE****************************************************************************************************************************IRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPA***************************************************APFPTVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFLGL*S********************ISDNISAATAAITSDPGFTAALVSAIASIIGN**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKDNDLINGEDHRDEKRVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIKLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLCALTQLEPTGKLAGSTAGREMINGENVGVARQFMDLGQAGKDDHKVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPDDGQRAKKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFLGLLSSLGLEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGNNDHQNHNGNNNSPSTARNTSEKIEQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	547	2.2.26 [Sep-21-2011]
Q9XEC3	528	Probable WRKY transcripti	yes	no	0.831	0.861	0.452	1e-90
Q9C519	553	WRKY transcription factor	no	no	0.842	0.833	0.437	2e-87
Q93WT0	538	Probable WRKY transcripti	no	no	0.857	0.871	0.447	2e-75
Q9ZSI7	489	Probable WRKY transcripti	no	no	0.625	0.699	0.386	6e-50
Q9LXG8	548	Probable WRKY transcripti	no	no	0.705	0.704	0.327	2e-45
Q8VWV6	480	Probable WRKY transcripti	no	no	0.471	0.537	0.410	5e-40
Q9C9F0	374	Probable WRKY transcripti	no	no	0.217	0.318	0.614	1e-39
Q9CAR4	387	Probable WRKY transcripti	no	no	0.550	0.777	0.348	7e-36
Q9FG77	687	Probable WRKY transcripti	no	no	0.162	0.129	0.544	2e-22
Q8S8P5	519	Probable WRKY transcripti	no	no	0.188	0.198	0.461	1e-21

>sp|Q9XEC3|WRK42_ARATH Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1

 Score =  334 bits (856), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 243/537 (45%), Positives = 314/537 (58%), Gaps = 82/537 (15%)

Query: 12  DHRDEKRVVNEMNFFAHDDSQHHHLKASDDRQ-----ETFRVDRVKTESSSAFDEHEERI 66
           D + ++ VVNE++FF   + +    + S + Q     ET RV  VK E+S   D+H++R 
Sbjct: 20  DEQHQRAVVNEVDFFRSAEKRD---RVSREEQNIIADETHRV-HVKRENSR-VDDHDDRS 74

Query: 67  KLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRL 126
              IN GLNL TANT ++ S  VD G+S   ++ ++   K + A LR +L K S +NQRL
Sbjct: 75  TDHINIGLNLLTANTGSDESM-VDDGLS---VDMEEKRTKCENAQLREELKKASEDNQRL 130

Query: 127 RSLLNQVNNDYRALQLHLCA-LTQLEPTGKLAGSTAGREMINGENVG--VARQFMDLGQA 183
           + +L+Q  N++ +LQ+ L A + Q E    LA +     + N   V   V RQF+DLG  
Sbjct: 131 KQMLSQTTNNFNSLQMQLVAVMRQQEDHHHLATTENNDNVKNRHEVPEMVPRQFIDLGPH 190

Query: 184 GKDDHKVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPD 243
             +        SSE+ T  R       +E  S          Q GKR    R E   T  
Sbjct: 191 SDEV-------SSEERTTVRSGSPPSLLEKSSS--------RQNGKR-VLVREESPETES 234

Query: 244 DGQR-AKKVPRFN-----------NNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASM 291
           +G R   KVP+ +            N SS+ +EQAA+++     +R+ARVSVRARSEA M
Sbjct: 235 NGWRNPNKVPKHHASSSICGGNGSENASSKVIEQAAAEA----TMRKARVSVRARSEAPM 290

Query: 292 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHP 351
           +SDGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRC++DRTIL+TTYEGNHNHP
Sbjct: 291 LSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHP 350

Query: 352 LPPAAMSMASTTSAAASMLLSGS-MPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFP 410
           LPPAAM+MASTT+AAASMLLSGS M + DGL+   NLLA+  +LP S S A++SASAPFP
Sbjct: 351 LPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLAR-TILPCSSSMATISASAPFP 409

Query: 411 TVTLDLTHSPNP--------LQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQS 462
           T+TLDLT SPN         +QF +  G            N   + H +G AL   N QS
Sbjct: 410 TITLDLTESPNGNNPTNNPLMQFSQRSGLVEL--------NQSVLPHMMGQALY-YNQQS 460

Query: 463 NFLGLLSSLGLEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASII 519
            F GL        P ++            +++SAATAAI S+P F AAL +AI SII
Sbjct: 461 KFSGLHMP---SQPLNAG-----------ESVSAATAAIASNPNFAAALAAAITSII 503

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1

 Score =  323 bits (828), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 240/549 (43%), Positives = 317/549 (57%), Gaps = 88/549 (16%)

Query: 3   KDNDLINGEDHRDEKRVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEH 62
           +D D  +G    +++ V  E++FF+   S+   +   DD  E FRV +         +E 
Sbjct: 70  EDEDFSSGVAGDNDREVPGEVDFFSDKKSR---VCREDD--EGFRVKK---------EEQ 115

Query: 63  EERIKLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVE 122
           ++R   D+NTGLNL T   T      +D G SS  +E K+   K +L  L+ +L KM+++
Sbjct: 116 DDRT--DVNTGLNLRTTGNTKSDESMIDDGESSE-MEDKR--AKNELVKLQDELKKMTMD 170

Query: 123 NQRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMINGENVGVARQFMDLGQ 182
           NQ+LR LL QV+N Y +LQ+HL +L Q +         A  +    E   V RQF+DLG 
Sbjct: 171 NQKLRELLTQVSNSYTSLQMHLVSLMQQQQQQNNKVIEAAEK---PEETIVPRQFIDLGP 227

Query: 183 AGKDDHKVSLCNSS-EDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVT 241
                    + NSS ED TR       E                   +R+   R  RE +
Sbjct: 228 TRAVGEAEDVSNSSSEDRTRSGGSSAAE-------------------RRSNGKRLGREES 268

Query: 242 PD-DGQRAKKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRK 300
           P+ +  + +KV    N+ +    +Q A  +     +R+ARVSVRARSEA MISDGCQWRK
Sbjct: 269 PETESNKIQKV----NSTTPTTFDQTAEAT-----MRKARVSVRARSEAPMISDGCQWRK 319

Query: 301 YGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMA 360
           YGQKMAKGNPCPRAYYRCTMA+GCPVRKQVQRC++DR+IL+TTYEGNHNHPLPPAA++MA
Sbjct: 320 YGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAVAMA 379

Query: 361 STTSAAASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSP 420
           STT+AAA+MLLSGSM S DG++   NLLA+  VLP S S A++SASAPFPTVTLDLTHSP
Sbjct: 380 STTTAAANMLLSGSMSSHDGMMNPTNLLAR-AVLPCSTSMATISASAPFPTVTLDLTHSP 438

Query: 421 ------------------NPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQS 462
                             N L  QRP  Q    +  NLP   +P  H +G AL +   QS
Sbjct: 439 PPPNGSNPSSSAATNNNHNSL-MQRPQQQQQQMT--NLPPGMLP--HVIGQALYN---QS 490

Query: 463 NFLGLLSSLGLEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGNN 522
            F GL  S G   P  +A ++  A   ++D I+    A+T+DP FTAAL + I+S+I   
Sbjct: 491 KFSGLQFSGG--SPSTAAFSQSHA---VADTIT----ALTADPNFTAALAAVISSMINGT 541

Query: 523 DHQNHNGNN 531
           +H +  GNN
Sbjct: 542 NHHDGEGNN 550

Transcription factor involved in the control of processes related to senescence and pathogen defense. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WT0|WRK31_ARATH Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1

 Score =  283 bits (724), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 241/538 (44%), Positives = 320/538 (59%), Gaps = 69/538 (12%)

Query: 15  DEKRVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIKLDINTGL 74
           D + VV+E++FF+    +      +DD  E  +V  +K E S   +    R   D+N GL
Sbjct: 25  DHRVVVDEVDFFSEKRDRVSRENINDDDDEGNKV-LIKMEGSRVEENDRSR---DVNIGL 80

Query: 75  NLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVN 134
           NL TANT ++ S  VD G+S  ++E K+   KI+ A L+ +L KM +ENQRLR +L+Q  
Sbjct: 81  NLLTANTGSDES-TVDDGLSM-DMEDKR--AKIENAQLQEELKKMKIENQRLRDMLSQAT 136

Query: 135 NDYRALQLHLCALTQLEPTGK------LAGSTAGREMINGE-NVGVARQFMDLG-QAGKD 186
            ++ ALQ+ L A+ + +          LA  +        E  + V RQFMDLG  +G  
Sbjct: 137 TNFNALQMQLVAVMRQQEQRNSSQDHLLAQESKAEGRKRQELQIMVPRQFMDLGPSSGAA 196

Query: 187 DHKVSLCNSSEDTTRFREFK---IVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPD 243
           +H   +  SSE+ T  R      ++ES   R +           GKR        E +  
Sbjct: 197 EHGAEV--SSEERTTVRSGSPPSLLESSNPREN-----------GKRLLGREESSEESES 243

Query: 244 DGQ-RAKKVPRFNNNNSSRDVEQAAS---QSQTTSMIRRARVSVRARSEASMISDGCQWR 299
           +      KVP+ N ++S+ +  +  +   QS   + +R+ARVSVRARSEA+MISDGCQWR
Sbjct: 244 NAWGNPNKVPKHNPSSSNSNGNRNGNVIDQSAAEATMRKARVSVRARSEAAMISDGCQWR 303

Query: 300 KYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSM 359
           KYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRC++DR+IL+TTYEGNHNHPLPPAA +M
Sbjct: 304 KYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAM 363

Query: 360 ASTTSAAASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHS 419
           ASTT+AAASMLLSGSM S DGL+   NLLA+  +LP S S A++SASAPFPT+TLDLT+S
Sbjct: 364 ASTTTAAASMLLSGSMSSQDGLMNPTNLLAR-AILPCSSSMATISASAPFPTITLDLTNS 422

Query: 420 PNP-----------LQF-QRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFLGL 467
           PN            +QF QRP       +P  LP         +G A+ +N  QS F   
Sbjct: 423 PNGNNPNMTTNNPLMQFAQRP-----GFNPAVLP-------QVVGQAMYNNQQQSKF--- 467

Query: 468 LSSLGLEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGNNDHQ 525
               GL+ P    Q  I A S +++++SAA+AAI SDP F AAL +AI SI+  + HQ
Sbjct: 468 ---SGLQLPAQPLQ--IAATSSVAESVSAASAAIASDPNFAAALAAAITSIMNGSSHQ 520

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSI7|WRK47_ARATH Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2

 Score =  199 bits (505), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 161/417 (38%), Positives = 225/417 (53%), Gaps = 75/417 (17%)

Query: 106 KIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLAGSTAGREM 165
           K +++ L+ +L ++  EN +L+ LL++V+  Y  LQ  +    Q +  G           
Sbjct: 96  KTQISRLKLELERLHEENHKLKHLLDEVSESYNDLQRRVLLARQTQVEGLHH-------- 147

Query: 166 INGENVGVARQFMDLGQAGKDDHKVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDH 225
                    +Q  D+ QAG                        +++E R   ++    +H
Sbjct: 148 ---------KQHEDVPQAGSS----------------------QALENRRPKDM----NH 172

Query: 226 QMGKRNTSDRTEREVTPDDGQR-AKKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVR 284
           +        R+  +V   D  R + K PR + N S+   EQ     Q     R+ARVSVR
Sbjct: 173 ETPATTLKRRSPDDVDGRDMHRGSPKTPRIDQNKSTNHEEQQNPHDQLP--YRKARVSVR 230

Query: 285 ARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTY 344
           ARS+A+ ++DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRC++D TIL TTY
Sbjct: 231 ARSDATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTY 290

Query: 345 EGNHNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLIMSPNLLAKNNV----LPFSPSS 400
           EGNHNHPLPP+A +MA+TTSAAA+MLLSGS  S     +S      ++      P++ + 
Sbjct: 291 EGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLSSPSATSSSSFYHNFPYTSTI 350

Query: 401 ASLSASAPFPTVTLDLTHSPNPLQFQRP-LGQFHFTSPNNLPHNFVPMSHGLGPALIDNN 459
           A+LSASAPFPT+TLDLT+ P PLQ     L Q+        P  F+P ++ +  ++ +NN
Sbjct: 351 ATLSASAPFPTITLDLTNPPRPLQPPPQFLSQYG-------PAAFLPNANQIR-SMNNNN 402

Query: 460 YQSNFLGLLSSLGLEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIA 516
            Q   L + +  G + P               + + +  AAI  DP FTAAL +AI+
Sbjct: 403 QQ---LLIPNLFGPQAP-------------PREMVDSVRAAIAMDPNFTAALAAAIS 443

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1

 Score =  184 bits (467), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 153/467 (32%), Positives = 233/467 (49%), Gaps = 81/467 (17%)

Query: 108 KLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMIN 167
           +L   +A+++++  EN++L+ +L ++ +DY++L+L    + Q EP+     +T  + M++
Sbjct: 35  ELESAKAEMSEVKEENEKLKGMLERIESDYKSLKLRFFDIIQQEPSNT---ATKNQNMVD 91

Query: 168 GENVGVARQFMDLGQAGKDDHKVSLCNS------SEDTTRFREFKIVESMEARSDDEI-- 219
                      DL    ++   VSL         S+   +  E     S E  +D+E+  
Sbjct: 92  HPKPTTT----DLSSFDQERELVSLSLGRRSSSPSDSVPKKEEKTDAISAEVNADEELTK 147

Query: 220 ----VALDDHQMGK--------RNTSDRTEREVTPDD--GQRAKKVPRFNNNNSSRDVEQ 265
               + +++   G+           +  +E    P    G+R+   P      S  D + 
Sbjct: 148 AGLTLGINNGNGGEPKEGLSMENRANSGSEEAWAPGKVTGKRSSPAPA-----SGGDADG 202

Query: 266 AASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCP 325
            A Q    + ++RARV VRAR +   ++DGCQWRKYGQK+AKGNPCPRAYYRCT+A GCP
Sbjct: 203 EAGQQ---NHVKRARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCP 259

Query: 326 VRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLIMSP 385
           VRKQVQRC+ D +IL+TTYEG H+H LP +A +MASTTSAAASMLLSGS  S    ++  
Sbjct: 260 VRKQVQRCADDMSILITTYEGTHSHSLPLSATTMASTTSAAASMLLSGSSSSPAAEMIGN 319

Query: 386 NL-----LAKNNVLPFSPSSASLSASAPF-PTVTLDLTHSPNPLQFQRPLGQFHFTSPNN 439
           NL        NN   +SP+  S     P  PTVTLDLT   +       L   +F   +N
Sbjct: 320 NLYDNSRFNNNNKSFYSPTLHS-----PLHPTVTLDLTAPQHSSSSSSSLLSLNFNKFSN 374

Query: 440 LPHNFVPMSHGLG--------------PALIDNNYQSNFLGLLSSLGLEHPYDSAQ---- 481
               F   S                  PA+  N Y S            +PY++ Q    
Sbjct: 375 SFQRFPSTSLNFSSTSSTSSNPSTLNLPAIWGNGYSSY---------TPYPYNNVQFGTS 425

Query: 482 ---NRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGNNDHQ 525
                +Q +  +++ +   T A+TSDP F + + +AI++++G+N  Q
Sbjct: 426 NLGKTVQNSQSLTETL---TKALTSDPSFHSVIAAAISTMVGSNGEQ 469

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1

 Score =  166 bits (420), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 130/317 (41%), Positives = 177/317 (55%), Gaps = 59/317 (18%)

Query: 275 MIRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCS 334
           ++++ RVSVR+R E   ++DGCQWRKYGQK+AKGNPCPRAYYRCT+A+ CPVRKQVQRCS
Sbjct: 173 LVKKTRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCS 232

Query: 335 QDRTILMTTYEGNHNHPLPPAAMSMASTTSAAASMLLSGSMPSAD------GLIMSPNLL 388
           +D +IL++TYEG HNHPLP +A +MAS TSAAASMLLSG+  S+       GL  S   L
Sbjct: 233 EDMSILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLHGLNFS---L 289

Query: 389 AKNNVLPFSPSSASLS--ASAPFPTVTLDLTHSPNPLQ-FQRPLGQFHFTSPNNLPHNFV 445
           + NN+ P  P +  L   +S+  PTVTLDLT S +  Q F   L +F     N    N  
Sbjct: 290 SGNNITP-KPKTHFLQSPSSSGHPTVTLDLTTSSSSQQPFLSMLNRFSSPPSNVSRSNSY 348

Query: 446 P-------------MSHGLGP----------ALIDNNYQSNFLGLLSSLGLEHPYD---- 478
           P             M+ G G             I+ + QS +  ++ +      +D    
Sbjct: 349 PSTNLNFSNNTNTLMNWGGGGNPSDQYRAAYGNINTHQQSPYHKIIQTRTAGSSFDPFGR 408

Query: 479 -----SAQ---NRIQAASLISDNISAATA----AITSDPGFTAALVSAIASIIGNNDHQN 526
                S Q   + I   ++IS  + +  A    AIT+DP F +AL +A++SI+G +   +
Sbjct: 409 SSSSHSPQINLDHIGIKNIISHQVPSLPAETIKAITTDPSFQSALATALSSIMGGDLKID 468

Query: 527 HNGNNNSPSTARNTSEK 543
           HN         RN +EK
Sbjct: 469 HN-------VTRNEAEK 478

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 93/122 (76%), Gaps = 3/122 (2%)

Query: 253 RFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCP 312
           R+N+++   ++ +  S SQ     R+ARVSVRAR E + ++DGCQWRKYGQK AKGNPCP
Sbjct: 198 RYNSSSLDMNMPRIISSSQGN---RKARVSVRARCETATMNDGCQWRKYGQKTAKGNPCP 254

Query: 313 RAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAAASMLLS 372
           RAYYRCT+A GCPVRKQVQRC +D +IL+TTYEG HNHPLP  A +MAST S +  +LL 
Sbjct: 255 RAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASTSPFLLLD 314

Query: 373 GS 374
            S
Sbjct: 315 SS 316

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR4|WRK36_ARATH Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1

 Score =  152 bits (384), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 179/353 (50%), Gaps = 52/353 (14%)

Query: 104 DKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC-ALTQLEPTGKLAGSTAG 162
           DK+ +L   +A + K+  EN++L+ LL+ + N+Y +LQ+ +   L Q +    +      
Sbjct: 21  DKEEELDATKAKVEKVREENEKLKLLLSTILNNYNSLQMQVSKVLGQQQGASSMELDHID 80

Query: 163 REMINGE-------NVGVARQFMDLGQAGKDDHKVSLCNSSEDTTRFREFKI---VESME 212
           R+  N +        +G + Q +   +  K D K+S  N  E   +         ++S E
Sbjct: 81  RQDENNDYDVDISLRLGRSEQKISKKEENKVD-KISTKNVEESKDKRSALGFGFQIQSYE 139

Query: 213 ARSDDEIVALDDHQMGKRNTSDRTEREVTPDDGQRAKKVPRFNNNNSSRDVEQAASQSQT 272
           A   D++      Q+   N  ++            ++K  +   N + +DV +   Q+  
Sbjct: 140 ASKLDDLC----RQVKLANAENKC---------VSSRKDVKSVRNENHQDVLEEHEQTG- 185

Query: 273 TSMIRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQR 332
              +++ RV V+A  E   I+DGCQWRKYGQK AK NP PRAYYRC+M+S CPVRKQVQR
Sbjct: 186 ---LKKTRVCVKASCEDPSINDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQR 242

Query: 333 CSQDRT-ILMTTYEGNHNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLIMSPNLLAKN 391
           C ++ T   MTTYEGNH+HPLP  A  MA+ TSAAAS+L SGS  S+     S +     
Sbjct: 243 CGEEETSAFMTTYEGNHDHPLPMEASHMAAGTSAAASLLQSGSSSSSSSTSASLSYF--- 299

Query: 392 NVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNF 444
              PF     S+S +   PTVTLDLT  PN               PN LP ++
Sbjct: 300 --FPF--HHFSISTTNSHPTVTLDLTR-PN--------------YPNQLPDDY 333

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 62/90 (68%), Gaps = 1/90 (1%)

Query: 266 AASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCP 325
           AA  S +T  IR  RV V+  S+  ++ DG +WRKYGQK+ KGNP PR+YY+CT A GC 
Sbjct: 460 AAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-APGCT 518

Query: 326 VRKQVQRCSQDRTILMTTYEGNHNHPLPPA 355
           VRK V+R S D   ++TTYEG HNH +P A
Sbjct: 519 VRKHVERASHDLKSVITTYEGKHNHDVPAA 548

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 262 DVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMA 321
           D E        +  +R  R+ V+  S+  ++ DG +WRKYGQK+ KGNP PR+YY+CT  
Sbjct: 331 DNETNGGNGGGSKTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTI 390

Query: 322 SGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSA 365
            GCPVRK V+R S D   ++TTYEG HNH +P A  S  +T  A
Sbjct: 391 -GCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYATNRA 433

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	547
359485613	593	PREDICTED: WRKY transcription factor 6-l	0.853	0.787	0.483	1e-114
147841888	620	hypothetical protein VITISV_024690 [Viti	0.853	0.753	0.480	1e-112
224131614	571	predicted protein [Populus trichocarpa]	0.881	0.844	0.471	1e-107
209867508	556	WRKY transcription factor [Picrorhiza ku	0.882	0.868	0.443	1e-101
147860185	551	hypothetical protein VITISV_035804 [Viti	0.829	0.823	0.499	1e-101
359494147	511	PREDICTED: probable WRKY transcription f	0.826	0.884	0.500	1e-101
356547095	614	PREDICTED: WRKY transcription factor 6 [	0.828	0.737	0.467	1e-100
297737463	496	unnamed protein product [Vitis vinifera]	0.820	0.905	0.5	1e-100
255567719	652	WRKY transcription factor, putative [Ric	0.868	0.728	0.484	1e-100
449453702	469	PREDICTED: probable WRKY transcription f	0.835	0.974	0.457	4e-98

>gi|359485613|ref|XP_002269696.2| PREDICTED: WRKY transcription factor 6-like [Vitis vinifera]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/529 (48%), Positives = 332/529 (62%), Gaps = 62/529 (11%)

Query: 15  DEK-RVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIKLDINTG 73
           DEK R+V+EM+FFA                     D+ +       D        ++NTG
Sbjct: 66  DEKPRIVDEMDFFA---------------------DKNRDSKPPTTDNKNSPYYFNVNTG 104

Query: 74  LNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIK--LAVLRADLNKMSVENQRLRSLLN 131
           L+L TANT++++S  VD G+S  N++    DK++K  L VL+A++ +M  EN+RLRS+LN
Sbjct: 105 LHLLTANTSSDQSM-VDDGMSPPNVD----DKRVKNELVVLQAEIERMHAENERLRSMLN 159

Query: 132 QVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMINGENVG---VARQFMDLGQAGKDDH 188
           QV N+Y ALQ+H+ AL Q +   K   +    +  +G N G   V RQF+DLG A K + 
Sbjct: 160 QVTNNYNALQVHMVALMQDQ---KAENNEEHDQKHSGNNNGGVVVPRQFIDLGLAAKAEV 216

Query: 189 KVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPDDGQR- 247
           +    +SSE  +  R    + + E  S +    L+  +  K+  S    RE +PD G + 
Sbjct: 217 EEPSLSSSEGRSGDRSGSPINNGEVGSKE----LELRKNEKKEYSSGIGREESPDQGSQW 272

Query: 248 -AKKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMA 306
            A KVPR N    S++V+Q      T + +R+ARVSVRARSEA MI+DGCQWRKYGQKMA
Sbjct: 273 GANKVPRLN---PSKNVDQ------TEATMRKARVSVRARSEAPMITDGCQWRKYGQKMA 323

Query: 307 KGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAA 366
           KGNPCPRAYYRCTMA+GCPVRKQVQRC++DR+IL+TTYEGNHNHPLPPAAM+MASTTS+A
Sbjct: 324 KGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTSSA 383

Query: 367 ASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQFQ 426
           A MLLSGSMPSADGL M+ N LA+  VLP S S A++SASAPFPTVTLDLT +PNPLQFQ
Sbjct: 384 ARMLLSGSMPSADGL-MNSNFLAR-TVLPCSSSMATISASAPFPTVTLDLTQNPNPLQFQ 441

Query: 427 RPLGQFHFTSPN---NLPHNFVPMSHGLGPALIDNNY--QSNFLGLLSSLGLEHP----- 476
           RP  QF+  SPN   NL          L P + +     QS F GL  S  +E       
Sbjct: 442 RPPSQFYVPSPNPTQNLAGPAAATPSSLLPQIFNQALYNQSKFSGLQMSQDMEAAQLPTH 501

Query: 477 YDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGNNDHQ 525
           +  +  +    + +++ +SAATAAIT+DP FTAAL +AI SIIG    Q
Sbjct: 502 HQPSSQQQSQQNSLAETVSAATAAITADPNFTAALAAAITSIIGGAQPQ 550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841888|emb|CAN65218.1| hypothetical protein VITISV_024690 [Vitis vinifera]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/529 (48%), Positives = 329/529 (62%), Gaps = 62/529 (11%)

Query: 15  DEK-RVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIKLDINTG 73
           DEK R+V+E +FFA                     D+ +       D        ++NTG
Sbjct: 93  DEKPRIVDEKDFFA---------------------DKNRDSKPPTTDNKNSPYYFNVNTG 131

Query: 74  LNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIK--LAVLRADLNKMSVENQRLRSLLN 131
           L+L TANT++++S  VD G+S  N++    DK++K  L VL+A++ +M  EN+RLRS+L 
Sbjct: 132 LHLLTANTSSDQSM-VDDGMSPPNVD----DKRVKNELVVLQAEIERMHAENERLRSMLX 186

Query: 132 QVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMINGENVG---VARQFMDLGQAGKDDH 188
           QV N+Y ALQ+H+ AL Q +   K   +    +  +G N G   V RQF+DLG A K + 
Sbjct: 187 QVTNNYNALQVHMVALMQDQ---KAENNEEHDQKHSGNNNGGVVVPRQFIDLGLAAKAEV 243

Query: 189 KVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPDDGQR- 247
           +    +SSE  +  R    + + E  S +    L+  +  K+  S    RE +PD G + 
Sbjct: 244 EEPSLSSSEGRSGDRSGSPINNGEVGSKE----LELRKNEKKEYSSGIGREESPDQGSQW 299

Query: 248 -AKKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMA 306
            A KVPR N    S++V+Q      T + +R+ARVSVRARSEA MI+DGCQWRKYGQKMA
Sbjct: 300 GANKVPRLN---PSKNVDQ------TEATMRKARVSVRARSEAPMITDGCQWRKYGQKMA 350

Query: 307 KGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAA 366
           KGNPCPRAYYRCTMA+GCPVRKQVQRC++DR+IL+TTYEGNHNHPLPPAAM+MASTTS+A
Sbjct: 351 KGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTSSA 410

Query: 367 ASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQFQ 426
           A MLLSGSMPSADGL M+ N LA+  VLP S S A++SASAPFPTVTLDLT +PNPLQFQ
Sbjct: 411 ARMLLSGSMPSADGL-MNSNFLAR-TVLPCSSSMATISASAPFPTVTLDLTQNPNPLQFQ 468

Query: 427 RPLGQFHFTSPN---NLPHNFVPMSHGLGPALIDNNY--QSNFLGLLSSLGLEHP----- 476
           RP  QF   SPN   NL          L P + +     QS F GL  S  +E       
Sbjct: 469 RPPSQFXVPSPNPXQNLAGPAAATPSSLLPQIFNQALYNQSKFSGLQMSQDMEAAQLPTH 528

Query: 477 YDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGNNDHQ 525
           +  +  +    + +++ +SAATAAIT+DP FTAAL +AI SIIG    Q
Sbjct: 529 HQPSSQQQSQQNSLAETVSAATAAITADPNFTAALAAAITSIIGGAQPQ 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131614|ref|XP_002321134.1| predicted protein [Populus trichocarpa] gi|222861907|gb|EEE99449.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 259/549 (47%), Positives = 335/549 (61%), Gaps = 67/549 (12%)

Query: 17  KRVVNEMNFFA---HDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIKLDINTG 73
           + V++EM+FFA   HDD       ++DD +++                    ++L++NTG
Sbjct: 48  RTVIDEMDFFARKKHDDGYPITNNSTDDLKDS---------------GSPTGLELNVNTG 92

Query: 74  LNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQV 133
           LNL T NT++++S  VD GISS N+E K+   K +LAVL+A++ +M VEN RL+ +LNQV
Sbjct: 93  LNLLTTNTSSDQSM-VDDGISS-NMEDKR--AKSELAVLQAEVERMKVENLRLKDMLNQV 148

Query: 134 NNDYRALQLHLCALTQLEPTGKLAGSTAGREMINGENVGVARQFMDLG----QAGKDDHK 189
            ++Y ALQ+HL  LTQ + +        G+   NG    V RQFMDLG     A  D   
Sbjct: 149 TSNYNALQMHLVTLTQDQKSHHKNEKLDGKNKNNGM---VPRQFMDLGLVAAAAAGDTDD 205

Query: 190 VSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPDDGQRAK 249
           +SL  S    +R R      ++E  ++D  +  D  + G    +D   RE +P  G  + 
Sbjct: 206 LSLSTSEGGRSRDRSRSPGNNVENNNEDGALVFDQDKKGFARGAD--HREDSPGQGWASN 263

Query: 250 KVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMAKGN 309
           KV R N+         A +  QT + IR+ARVSVRARSE +MISDGCQWRKYGQK+AKGN
Sbjct: 264 KVARLNS---------AKTIDQTEATIRKARVSVRARSEDAMISDGCQWRKYGQKLAKGN 314

Query: 310 PCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAAASM 369
           PCPRAYYRCTMA+GCPVRKQVQRC++DRTIL+TTYEGNHNHPLPPAAM+MASTTS+AA M
Sbjct: 315 PCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTSSAARM 374

Query: 370 LLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQFQRPL 429
           LLSGSM SADGL+ S N L +  +LP S + A++SASAPFPTVTLDLT +PNPLQ  +  
Sbjct: 375 LLSGSMSSADGLLNS-NFLTR-TLLPCSSNLATISASAPFPTVTLDLTQNPNPLQLPKQP 432

Query: 430 GQFHFTSPNN------------LPHNFVPMSHGLGPALIDNNYQSNFLGLLSSLGLE--H 475
            QF F  PN             LP  F       G AL +   QS F GL  S  +E   
Sbjct: 433 TQFQFPFPNAPQDPANASATALLPQIF-------GQALYN---QSKFSGLQMSQDMEPNR 482

Query: 476 PYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGNNDHQNHNGNNNSPS 535
               +Q  IQ   L +D+++AATAAI +DP FTAAL +AI SIIG     N N  NN+ +
Sbjct: 483 LGQQSQPAIQQNPL-ADSLAAATAAIAADPNFTAALAAAITSIIGGAHQNNVNSTNNAQT 541

Query: 536 TARNTSEKI 544
           T  N++  I
Sbjct: 542 TTSNSNGNI 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209867508|gb|ACI90292.1| WRKY transcription factor [Picrorhiza kurrooa]

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 245/552 (44%), Positives = 327/552 (59%), Gaps = 69/552 (12%)

Query: 4   DNDLINGEDHRDEKRVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHE 63
           +ND++      D   V+ E++FF            S+ R+ +  V      S++   EH 
Sbjct: 49  ENDVVFSPAAGDRGVVLGEVDFF------------SEKRRPSNEV------SAAMKKEHS 90

Query: 64  ERIKLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVEN 123
              ++D+NTGL L TANT +++S  VD GISS + E K+   K +LA L+ +L +M+ EN
Sbjct: 91  NAEEMDVNTGLQLVTANTGSDQS-TVDDGISS-DAEDKR--AKNELAQLQVELERMNAEN 146

Query: 124 QRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMINGENVGVARQFMDLGQA 183
           QRL+ +L QV N+Y ALQ+HL  L Q +   ++       + +      + RQFMDL  +
Sbjct: 147 QRLKEMLTQVTNNYTALQMHLVTLMQQQQEHEILERKPEEKKLENGGSMIPRQFMDLAPS 206

Query: 184 GKDDHKVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPD 243
              D +    NSS                  S++  ++   H   + + + RT RE +P+
Sbjct: 207 AATDEQT---NSS------------------SEERTLSGSPHNTVEVSRNKRTGREDSPE 245

Query: 244 -DGQRAKKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYG 302
            +     K P+ +     + V+Q+A  S     +R+ RVSVRARSEA MISDGCQWRKYG
Sbjct: 246 SEAWGPNKAPKMS---PPKPVDQSAEAS-----MRKVRVSVRARSEAPMISDGCQWRKYG 297

Query: 303 QKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMAST 362
           QKMAKGNPCPRAYYRCTMA GCPVRKQVQRC++DR IL+TTYEG HNHPLPPAA++MAS 
Sbjct: 298 QKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRAILITTYEGTHNHPLPPAAVAMASI 357

Query: 363 TSAAASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNP 422
           TSAAASMLLSGSMPSADG+ M+PN LA+  + P S + A++SASAP PTVTLDLT +PNP
Sbjct: 358 TSAAASMLLSGSMPSADGM-MNPNFLAR-TIFPCSSNMATISASAP-PTVTLDLTQNPNP 414

Query: 423 LQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNY--QSNFLGLLSSLGLEHP---- 476
           LQFQRP   F    P +  HNF P+ +   P +       QS F GL  S  ++      
Sbjct: 415 LQFQRPPNPFQVPFPGSS-HNFGPIPNANAPQVFGQALYNQSKFSGLQMSQDIDEAAQLL 473

Query: 477 -YDSAQNRI-----QAASLISDNISAATAAITSDPGFTAALVSAIASIIGNNDHQNHNGN 530
              S Q ++     QA    +D +SAATAAIT+DP F AAL +AI+SI G     +   N
Sbjct: 474 RQSSQQPQVHQAQAQAHPSFADTLSAATAAITADPNFMAALAAAISSIFGGGSQPSIANN 533

Query: 531 NNSP-STARNTS 541
           N+SP +T  NTS
Sbjct: 534 NSSPNNTDVNTS 545

Source: Picrorhiza kurrooa

Species: Picrorhiza kurrooa

Genus: Picrorhiza

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860185|emb|CAN78720.1| hypothetical protein VITISV_035804 [Vitis vinifera]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 260/521 (49%), Positives = 336/521 (64%), Gaps = 67/521 (12%)

Query: 18  RVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIK-LDINTGLNL 76
           R +NEM+FFA              ++ET RVD VK E+++    H+  ++   INTGLNL
Sbjct: 51  RRINEMDFFA--------------QKETARVD-VKRETTA----HDGLVQGFHINTGLNL 91

Query: 77  STANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNND 136
             A+  +E+S +VD G S  N E  K +   K+  LRA+L  M+ EN++LR++L+QVNN+
Sbjct: 92  HLASGGSEKS-SVDGGTSPSNKE--KLNMSDKMVGLRAELENMNKENKQLRAMLSQVNNN 148

Query: 137 YRALQLHLCALTQLEPTGKLAGSTAGREMINGENVG--------VARQFMDLGQAG---K 185
           Y ALQ+H+  L Q +   +   S A      G+ VG        V RQFMDLG+A    K
Sbjct: 149 YSALQMHVVTLMQRQHNRRAEISLANEVNTEGK-VGERNRNETIVPRQFMDLGRASMAEK 207

Query: 186 DDHKVSLC-----NSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREV 240
           D+   S        ++ED +R    +   S    + D          G+  +SD++ +  
Sbjct: 208 DESSPSWSGSRSPQTNEDASRESRRRKTGSTSNENKDG---------GREESSDQSLQGG 258

Query: 241 TPDDGQRAKKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRK 300
            P+      KVP+FN    S++VEQA   S+  SM+R+ARVSVRARSEASMISDGCQWRK
Sbjct: 259 LPN------KVPKFN---CSQNVEQA---SEAMSMMRKARVSVRARSEASMISDGCQWRK 306

Query: 301 YGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMA 360
           YGQKMAKGNPCPRAYYRCTMA+ CPVRKQVQR ++DRT+L+TTYEG+HNHPLPPAAM+MA
Sbjct: 307 YGQKMAKGNPCPRAYYRCTMATACPVRKQVQRSAEDRTVLITTYEGHHNHPLPPAAMAMA 366

Query: 361 STTSAAASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSP 420
           STTSAAA+MLLSGSMPS+DG IMS +  ++  + P SPS A++SASAPFPT+TLDLTHSP
Sbjct: 367 STTSAAATMLLSGSMPSSDG-IMSSSFHSR-TMFPCSPSLATISASAPFPTITLDLTHSP 424

Query: 421 NPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFLGLLSSLGLEHPYDSA 480
           N LQ QRP  QFH    N+ P NF P SH   P L   + QS F  L SS  ++ P    
Sbjct: 425 NLLQHQRPNAQFHVPFQNH-PQNFAPGSHAFNPVL---HSQSKFSALQSSPEMQPPQVGT 480

Query: 481 QNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGN 521
           +  ++ +S  SD ++AATAAIT+DP FTAALV+AI SIIGN
Sbjct: 481 EQVLKPSSSSSDTVTAATAAITADPNFTAALVAAITSIIGN 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494147|ref|XP_002279019.2| PREDICTED: probable WRKY transcription factor 42-like [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 257/513 (50%), Positives = 330/513 (64%), Gaps = 61/513 (11%)

Query: 18  RVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIK-LDINTGLNL 76
           R +NEM+FFA              ++ET RVD VK E+++    H+  ++   INTGLNL
Sbjct: 21  RRINEMDFFA--------------QKETARVD-VKRETTA----HDGLVQGFHINTGLNL 61

Query: 77  STANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNND 136
             A+  +E+S +VD G S  N E       + L   RA+L  M+ EN++LR++L+QVNN+
Sbjct: 62  HLASGGSEKS-SVDGGTSPSNKEKLNMSDMVGL---RAELENMNKENKQLRAMLSQVNNN 117

Query: 137 YRALQLHLCALTQLEPTGKLAGSTAGREMINGENVGVARQFMDLGQAG---KDDHKVSLC 193
           Y ALQ+H+  L Q +   +   S A     N     V RQFMDLG+A    KD+   S  
Sbjct: 118 YSALQMHVVTLMQRQHNRRAEISLANER--NRNETIVPRQFMDLGRASMAEKDESSPSWS 175

Query: 194 -----NSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPDDGQRA 248
                 ++ED +R    +   S    + D          G+  +SD++ +   P+     
Sbjct: 176 GSRSPQTNEDASRESRRRKTGSTSNENKDG---------GREESSDQSLQGGLPN----- 221

Query: 249 KKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMAKG 308
            KVP+FN    S++VEQA   S+  SM+R+ARVSVRARSEASMISDGCQWRKYGQKMAKG
Sbjct: 222 -KVPKFN---CSQNVEQA---SEAMSMMRKARVSVRARSEASMISDGCQWRKYGQKMAKG 274

Query: 309 NPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAAAS 368
           NPCPRAYYRCTMA+ CPVRKQVQR ++DRT+L+TTYEG+HNHPLPPAAM+MASTTSAAA+
Sbjct: 275 NPCPRAYYRCTMATACPVRKQVQRSAEDRTVLITTYEGHHNHPLPPAAMAMASTTSAAAT 334

Query: 369 MLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQFQRP 428
           MLLSGSMPS+DG IMS +  ++  + P SPS A++SASAPFPT+TLDLTHSPN LQ QRP
Sbjct: 335 MLLSGSMPSSDG-IMSSSFHSR-TMFPCSPSLATISASAPFPTITLDLTHSPNLLQHQRP 392

Query: 429 LGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFLGLLSSLGLEHPYDSAQNRIQAAS 488
             QFH     NLP NF P SH   P L   + QS F  L SS  ++ P    +  ++ +S
Sbjct: 393 NAQFHVPF-QNLPQNFAPGSHAFNPVL---HSQSKFSALQSSPEMQPPQVGTEQVLKPSS 448

Query: 489 LISDNISAATAAITSDPGFTAALVSAIASIIGN 521
             SD ++AATAAIT+DP FTAALV+AI SIIGN
Sbjct: 449 SSSDTVTAATAAITADPNFTAALVAAITSIIGN 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547095|ref|XP_003541953.1| PREDICTED: WRKY transcription factor 6 [Glycine max]

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/498 (46%), Positives = 302/498 (60%), Gaps = 45/498 (9%)

Query: 66  IKLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQR 125
           + L +NTGLNL T N ++++S  VD  IS  + + +    K ++ VL+ +L +M VEN R
Sbjct: 130 LGLKVNTGLNLLTTNASSDQSMVVDDDISPNSGDKRA---KSEMVVLQVELERMKVENHR 186

Query: 126 LRSLLNQVNNDYRALQLHLCALTQ---------LEPTGKLAGSTAGREMINGENVGVARQ 176
           L+++L+QVNN+Y ALQ HL +L +          +P     G    ++  NG    V RQ
Sbjct: 187 LKNMLDQVNNNYNALQTHLVSLMKDQMDKEDDKQQPHQVFDGKLEEKQAGNGGGALVPRQ 246

Query: 177 FMDLGQAGKDD-------HKVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGK 229
           FMDLG A   D       H  S+  S +D+      ++       + DE +  D     K
Sbjct: 247 FMDLGLATNADTNETSHSHSSSVIRS-QDSPPTNNTEVASKKNGGASDEGLVFDQD---K 302

Query: 230 RNTSDRTEREVTPDDGQRA--KKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARS 287
           +      ERE +P D   A    VP+F+     R+V+QA +       +R+ARVSVRARS
Sbjct: 303 KEFGRGIEREDSPSDQGVAANNNVPKFS---PPRNVDQAEA------TMRKARVSVRARS 353

Query: 288 EASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGN 347
           EA MI+DGCQWRKYGQKMAKGNPCPRAYYRCTMA+GCPVRKQVQRC++DRTIL+TTYEGN
Sbjct: 354 EAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGN 413

Query: 348 HNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASA 407
           HNHPLPPAAM+MA TTS+AA MLLSGSM SADGL M+ + L +  +LP S S A++SASA
Sbjct: 414 HNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGL-MNASFLTR-TLLPCSSSMATISASA 471

Query: 408 PFPTVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNY--QSNFL 465
           PFPTVTLDLT SPNPLQF +   QF    P  +P NF      L P +       QS F 
Sbjct: 472 PFPTVTLDLTQSPNPLQFPKQPSQFQIPFP-GVPQNFANSQASLLPQIFGQALYNQSKFS 530

Query: 466 GLLSSLGLEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAALVSAIASIIGNNDHQ 525
           GL  S   +    S Q++ +    ++D +SAA AA   DP FTAAL +AI SIIG     
Sbjct: 531 GLQMSQDSDPSQLSNQSQ-RPPPHLADTVSAAIAA---DPNFTAALAAAITSIIGGAQPN 586

Query: 526 NHN--GNNNSPSTARNTS 541
           N++    N + +T+ NTS
Sbjct: 587 NNSTTSTNYNGTTSTNTS 604

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737463|emb|CBI26664.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 258/516 (50%), Positives = 332/516 (64%), Gaps = 67/516 (12%)

Query: 23  MNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIK-LDINTGLNLSTANT 81
           M+FFA              ++ET RVD VK E+++    H+  ++   INTGLNL  A+ 
Sbjct: 1   MDFFA--------------QKETARVD-VKRETTA----HDGLVQGFHINTGLNLHLASG 41

Query: 82  TNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQ 141
            +E+S +VD G S  N E  K +   K+  LRA+L  M+ EN++LR++L+QVNN+Y ALQ
Sbjct: 42  GSEKS-SVDGGTSPSNKE--KLNMSDKMVGLRAELENMNKENKQLRAMLSQVNNNYSALQ 98

Query: 142 LHLCALTQLEPTGKLAGSTAGREMINGENVG--------VARQFMDLGQAG---KDDHKV 190
           +H+  L Q +   +   S A      G+ VG        V RQFMDLG+A    KD+   
Sbjct: 99  MHVVTLMQRQHNRRAEISLANEVNTEGK-VGERNRNETIVPRQFMDLGRASMAEKDESSP 157

Query: 191 SLC-----NSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPDDG 245
           S        ++ED +R    +   S    + D          G+  +SD++ +   P+  
Sbjct: 158 SWSGSRSPQTNEDASRESRRRKTGSTSNENKDG---------GREESSDQSLQGGLPN-- 206

Query: 246 QRAKKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKM 305
               KVP+FN    S++VEQA   S+  SM+R+ARVSVRARSEASMISDGCQWRKYGQKM
Sbjct: 207 ----KVPKFN---CSQNVEQA---SEAMSMMRKARVSVRARSEASMISDGCQWRKYGQKM 256

Query: 306 AKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSA 365
           AKGNPCPRAYYRCTMA+ CPVRKQVQR ++DRT+L+TTYEG+HNHPLPPAAM+MASTTSA
Sbjct: 257 AKGNPCPRAYYRCTMATACPVRKQVQRSAEDRTVLITTYEGHHNHPLPPAAMAMASTTSA 316

Query: 366 AASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQF 425
           AA+MLLSGSMPS+DG IMS +  ++  + P SPS A++SASAPFPT+TLDLTHSPN LQ 
Sbjct: 317 AATMLLSGSMPSSDG-IMSSSFHSR-TMFPCSPSLATISASAPFPTITLDLTHSPNLLQH 374

Query: 426 QRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFLGLLSSLGLEHPYDSAQNRIQ 485
           QRP  QFH     NLP NF P SH   P L   + QS F  L SS  ++ P    +  ++
Sbjct: 375 QRPNAQFHVPF-QNLPQNFAPGSHAFNPVL---HSQSKFSALQSSPEMQPPQVGTEQVLK 430

Query: 486 AASLISDNISAATAAITSDPGFTAALVSAIASIIGN 521
            +S  SD ++AATAAIT+DP FTAALV+AI SIIGN
Sbjct: 431 PSSSSSDTVTAATAAITADPNFTAALVAAITSIIGN 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567719|ref|XP_002524838.1| WRKY transcription factor, putative [Ricinus communis] gi|223535898|gb|EEF37558.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 264/545 (48%), Positives = 334/545 (61%), Gaps = 70/545 (12%)

Query: 3   KDNDLINGEDHRDEKRVVNEMNFFAHDDSQHHH-------LKASDDRQETFRVDRVKTES 55
           +D+DL    DH  ++  ++EM+FFA    +HH        +K +++   T  +D  K   
Sbjct: 87  EDDDLSLPSDHDYKRTAIDEMDFFAE---KHHRDDDDDDDVKPTNNTSPT--IDDFKDPK 141

Query: 56  SSAFDEHEERIKLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRAD 115
           S  FD         +NTGLNL T NT++++S  VD GISS N+E K+   K +LAVL+A+
Sbjct: 142 SLGFD---------VNTGLNLLTTNTSSDQSM-VDDGISS-NMEDKR--AKNELAVLQAE 188

Query: 116 LNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEPTGK---LAGSTAGREMINGENVG 172
           L +M VEN RLR +L+QV ++Y ALQ+HL  L Q +   +     G    +   NG  VG
Sbjct: 189 LERMKVENLRLRDMLSQVTSNYNALQMHLVTLMQDQKQSRDEITNGEEKKKHNGNGTAVG 248

Query: 173 VARQFMDLGQAGKDDH-------KVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDH 225
             RQFMDLG A            ++SL +SSE  +R R      +     +D      D 
Sbjct: 249 -PRQFMDLGLAAATAGGAGGDTDELSL-SSSEGRSRDRSRSPGNNNNNNIEDGTAFDQD- 305

Query: 226 QMGKRNTSDRTEREVTPDDGQRAKKVPRFNNNNSSRDVEQAASQSQTTSMIRRARVSVRA 285
              K+  +   ERE +PD G  + KV RFN++ +S D        QT + IR+ARVSVRA
Sbjct: 306 ---KKGINGGIEREDSPDQGWGSNKVARFNSSKNSVD--------QTEATIRKARVSVRA 354

Query: 286 RSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYE 345
           RSEA MI+DGCQWRKYGQKMAKGNPCPRAYYRCTMA+GCPVRKQVQRC++DRTIL+TTYE
Sbjct: 355 RSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYE 414

Query: 346 GNHNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLIMSPNLLAKNNVLPFSPSSASLSA 405
           GNHNHPLPPAAM+MASTTS+AA MLLSGSM SADG IM+PN L +  +LP S S A++SA
Sbjct: 415 GNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADG-IMNPNFLTR-TILPCSSSMATISA 472

Query: 406 SAPFPTVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNFV--P----MSHGLGPALIDNN 459
           SAPFPTVTLDLT +PNPLQFQR   QF    PN  P NF   P    +    G AL +  
Sbjct: 473 SAPFPTVTLDLTQNPNPLQFQRQQTQFQVPFPNP-PQNFANSPAAALLPQIFGQALYN-- 529

Query: 460 YQSNFLGLLSSLGLE---------HPYDSAQNRIQAASLISDNISAATAAITSDPGFTAA 510
            QS F GL  S  +E          P    Q +    + ++D +SAATAAI +DP FTAA
Sbjct: 530 -QSKFSGLQMSQDVEGNNKLGNQSQPGPIQQQQQGQQNSLADTVSAATAAIAADPNFTAA 588

Query: 511 LVSAI 515
           L +AI
Sbjct: 589 LAAAI 593

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453702|ref|XP_004144595.1| PREDICTED: probable WRKY transcription factor 42-like [Cucumis sativus]

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 234/511 (45%), Positives = 308/511 (60%), Gaps = 54/511 (10%)

Query: 23  MNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIKLDINTGLNLSTANTT 82
           MNFF  DD                   + +  S+S  +    ++  ++NTGLNL T N+ 
Sbjct: 1   MNFFPSDD-------------------KSRVLSASHSNLTPTKLPFNVNTGLNLLTTNSC 41

Query: 83  NERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQL 142
           +++S  VD G+S  N E K+   K + AVL+A+L +++ EN RL+ +LNQV ++Y+ LQ+
Sbjct: 42  SDQSM-VDDGVSP-NPEEKR--VKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQM 97

Query: 143 HLCALTQLEPTGKLAGSTAGREMINGENVGVARQFMDLGQAGKDDHKVSLCNSSEDTTRF 202
               L Q + T  +          +G    V RQFMDLG A   ++  +  +SSE  +  
Sbjct: 98  QFNTLIQTQKTEDVGDPIEENPDGSGGGGMVPRQFMDLGLATNTENDEASMSSSEGRSGE 157

Query: 203 REFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPDDGQRAKKVPRFNNNNSSRD 262
           R      + E  S             KR + D++    + ++     KVP+F+++ S ++
Sbjct: 158 RSRSPGNTGEVASS------------KRQSPDQSSNWGS-NNNNNNNKVPKFSSS-SGKE 203

Query: 263 VEQAASQSQTTSMIRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAS 322
           V+Q      T + +R+ARVSVRARSEA MI+DGCQWRKYGQKMAKGNPCPRAYYRCTMA 
Sbjct: 204 VDQ------TEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAL 257

Query: 323 GCPVRKQVQRCSQDRTILMTTYEGNHNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLI 382
           GCPVRKQVQRC++D+TIL+TTYEGNHNHPLPPAAM+MASTTS+AA MLLSGSM SADGL 
Sbjct: 258 GCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGL- 316

Query: 383 MSPNLLAKNNVLPFSPSSASLSASAPFPTVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPH 442
           M+ N LA+  +LP S S A++SASAPFPTVTLDLT +PNPL FQRP    HF  P     
Sbjct: 317 MNSNFLAR-TLLPCSSSMATISASAPFPTVTLDLTQTPNPL-FQRP-ATGHFPIPFAAAA 373

Query: 443 NFVPMSHGLGPALIDNNYQSNFLGLLSSLGLEHPYDSAQNRIQAASLISDNISAATAAIT 502
                    G AL +   QS F GL  S  +E    + Q      +  +D +SAA AAI 
Sbjct: 374 PPQTFPQIFGHALYN---QSKFSGLQMSKDME----APQPPPPPQNPFTDTLSAAGAAIA 426

Query: 503 SDPGFTAALVSAIASIIGNNDHQNHNGNNNS 533
           SDP F AAL +A+ S+IG + HQ  NGN NS
Sbjct: 427 SDPNFIAALATAMTSLIGGSHHQKENGNGNS 457

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	547
TAIR|locus:2120623	538	WRKY31 "WRKY DNA-binding prote	0.917	0.933	0.365	5.9e-73
TAIR|locus:2137179	528	WRKY42 [Arabidopsis thaliana (	0.864	0.895	0.375	3.1e-67
TAIR|locus:2133432	489	WRKY47 [Arabidopsis thaliana (	0.491	0.550	0.349	3.4e-49
TAIR|locus:2018052	553	WRKY6 [Arabidopsis thaliana (t	0.765	0.757	0.307	3.9e-44
TAIR|locus:2034964	480	WRKY61 "WRKY DNA-binding prote	0.605	0.689	0.292	8.2e-37
TAIR|locus:2150876	548	WRKY72 "WRKY DNA-binding prote	0.740	0.739	0.254	1.6e-34
TAIR|locus:2199317	374	WRKY9 "WRKY DNA-binding protei	0.179	0.262	0.564	1.5e-33
TAIR|locus:2196779	387	WRKY36 "WRKY DNA-binding prote	0.597	0.844	0.288	6.2e-30
UNIPROTKB|Q6IEL0	348	WRKY71 "Transcription factor W	0.115	0.181	0.634	1.5e-26
TAIR|locus:2124874	310	WRKY18 "WRKY DNA-binding prote	0.213	0.377	0.344	2.3e-24

TAIR|locus:2120623 WRKY31 "WRKY DNA-binding protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 198/541 (36%), Positives = 276/541 (51%)

Query:    15 DEKRVVNEMNFFAHDDSQHHHLKASDDRQETFRVDRVKTESSSAFDEHEERIKLDINTGL 74
             D + VV+E++FF+    +      +DD  E  +V  +K E S    E  +R + D+N GL
Sbjct:    25 DHRVVVDEVDFFSEKRDRVSRENINDDDDEGNKV-LIKMEGSRV--EENDRSR-DVNIGL 80

Query:    75 NLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSLLNQVN 134
             NL TANT ++ S  VD G+S  ++E K+   KI+ A L+ +L KM +ENQRLR +L+Q  
Sbjct:    81 NLLTANTGSDES-TVDDGLSM-DMEDKR--AKIENAQLQEELKKMKIENQRLRDMLSQAT 136

Query:   135 NDYRALQLHLCA-LTQLEPTGKLAGSTAGREM-INGEN-----VGVARQFMDLG-QAGKD 186
              ++ ALQ+ L A + Q E           +E    G       + V RQFMDLG  +G  
Sbjct:   137 TNFNALQMQLVAVMRQQEQRNSSQDHLLAQESKAEGRKRQELQIMVPRQFMDLGPSSGAA 196

Query:   187 DHKVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPDDGQ 246
             +H   +  SSE+ T  R       +E+ +  E        +G+  +S+ +E     +  +
Sbjct:   197 EHGAEV--SSEERTTVRSGSPPSLLESSNPREN---GKRLLGREESSEESESNAWGNPNK 251

Query:   247 RAKKVPRFNNNNSSRDVEQAASQSQTTSMIXXXXXXXXXXXEASMISDGCQWRKYGQKMA 306
               K  P  +N+N +R+      QS   + +           EA+MISDGCQWRKYGQKMA
Sbjct:   252 VPKHNPSSSNSNGNRN-GNVIDQSAAEATMRKARVSVRARSEAAMISDGCQWRKYGQKMA 310

Query:   307 KGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPXXXXXXXXXXXXX 366
             KGNPCPRAYYRCTMA GCPVRKQVQRC++DR+IL+TTYEGNHNHPLP             
Sbjct:   311 KGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAA 370

Query:   367 XXXXXXXXXXXXDGLIMSPNLLAKNNVXXXXXXXXXXXXXXXXXTVTLDLTHSPN---P- 422
                         DGL+   NLLA+  +                 T+TLDLT+SPN   P 
Sbjct:   371 ASMLLSGSMSSQDGLMNPTNLLARA-ILPCSSSMATISASAPFPTITLDLTNSPNGNNPN 429

Query:   423 LQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDNNYQSNFXXXXXXXXXEHPYDSAQN 482
             +    PL QF    P   P   +P    +G A+ +N  QS F         + P    Q 
Sbjct:   430 MTTNNPLMQFA-QRPGFNPA-VLPQV--VGQAMYNNQQQSKFSGL------QLPAQPLQ- 478

Query:   483 RIQAASLISDNISAATAAITSDPGFTAALVSAIASIIXXXXXXXXXXXXXSPSTARNTSE 542
              I A S +++++SAA+AAI SDP F AAL +AI SI+             + +T+ N S 
Sbjct:   479 -IAATSSVAESVSAASAAIASDPNFAAALAAAITSIMNGSSHQNNNTNNNNVATSNNDSR 537

Query:   543 K 543
             +
Sbjct:   538 Q 538

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2137179 WRKY42 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 195/519 (37%), Positives = 263/519 (50%)

Query:    12 DHRDEKRVVNEMNFFAHDDSQHHHLKASDD--RQETFRVDRVKTESSSAFDEHEERIKLD 69
             D + ++ VVNE++FF   + +    +   +    ET RV  VK E+S   D+H++R    
Sbjct:    20 DEQHQRAVVNEVDFFRSAEKRDRVSREEQNIIADETHRV-HVKRENSRV-DDHDDRSTDH 77

Query:    70 INTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNKMSVENQRLRSL 129
             IN GLNL TANT ++ S  VD G+S  ++E K+   K + A LR +L K S +NQRL+ +
Sbjct:    78 INIGLNLLTANTGSDESM-VDDGLSV-DMEEKR--TKCENAQLREELKKASEDNQRLKQM 133

Query:   130 LNQVNNDYRALQLHLCA-LTQLEPTGKLAGSTAGREMINGENVG--VARQFMDLGQAGKD 186
             L+Q  N++ +LQ+ L A + Q E    LA +     + N   V   V RQF+DLG     
Sbjct:   134 LSQTTNNFNSLQMQLVAVMRQQEDHHHLATTENNDNVKNRHEVPEMVPRQFIDLGP---- 189

Query:   187 DHKVSLCNSSEDTTRFREFK---IVESMEARSDDEIVALDDHQMGKRNTSDRTEREVTPD 243
              H   +  SSE+ T  R      ++E   +R + + V + +      +   R   +V   
Sbjct:   190 -HSDEV--SSEERTTVRSGSPPSLLEKSSSRQNGKRVLVREESPETESNGWRNPNKVPKH 246

Query:   244 DGQRAKKVPRFNNNNSSRDVEQAASQSQTTSMIXXXXXXXXXXXEASMISDGCQWRKYGQ 303
                 +      + N SS+ +EQAA+++     +           EA M+SDGCQWRKYGQ
Sbjct:   247 HASSSICGGNGSENASSKVIEQAAAEAT----MRKARVSVRARSEAPMLSDGCQWRKYGQ 302

Query:   304 KMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLP-XXXXXXXXX 362
             KMAKGNPCPRAYYRCTMA GCPVRKQVQRC++DRTIL+TTYEGNHNHPLP          
Sbjct:   303 KMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTT 362

Query:   363 XXXXXXXXXXXXXXXXDGLIMSPNLLAKNNVXXXXXXXXXXXXXXXXXTVTLDLTHSPNP 422
                             DGL+   NLLA+  +                 T+TLDLT SPN 
Sbjct:   363 TAAASMLLSGSTMSNQDGLMNPTNLLART-ILPCSSSMATISASAPFPTITLDLTESPNG 421

Query:   423 LQ-FQRPLGQFHFTSPN-NLPHNFVPMSHGLGPALIDNNYQSNFXXXXXXXXXEHPYDSA 480
                   PL QF   S    L  + +P  H +G AL  N  QS F          H     
Sbjct:   422 NNPTNNPLMQFSQRSGLVELNQSVLP--HMMGQALYYNQ-QSKFSGL-------HMPSQP 471

Query:   481 QNRIQAASLISDNISAATAAITSDPGFTAALVSAIASII 519
              N         +++SAATAAI S+P F AAL +AI SII
Sbjct:   472 LNA-------GESVSAATAAIASNPNFAAALAAAITSII 503

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2133432 WRKY47 [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 3.4e-49, Sum P(3) = 3.4e-49
 Identities = 100/286 (34%), Positives = 133/286 (46%)

Query:   224 DHQMGKRNTSDRTEREVTPDDGQRAK-KVPRFNNNNSSRDVEQAASQSQTTSMIXXXXXX 282
             +H+        R+  +V   D  R   K PR + N S+   EQ     Q           
Sbjct:   171 NHETPATTLKRRSPDDVDGRDMHRGSPKTPRIDQNKSTNHEEQQNPHDQLP--YRKARVS 228

Query:   283 XXXXXEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMT 342
                  +A+ ++DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRC++D TIL T
Sbjct:   229 VRARSDATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTT 288

Query:   343 TYEGNHNHPLP-XXXXXXXXXXXXXXXXXXXXXXXXXDGLIMSPNLLAKNNVXXXXXXXX 401
             TYEGNHNHPLP                             + SP+  + ++         
Sbjct:   289 TYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLSSPSATSSSSFYHNFPYTS 348

Query:   402 XXXXXXXXX---TVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLGPALIDN 458
                         T+TLDLT+ P PLQ   P  QF   S    P  F+P ++ +  ++ +N
Sbjct:   349 TIATLSASAPFPTITLDLTNPPRPLQ---PPPQF--LSQYG-PAAFLPNANQIR-SMNNN 401

Query:   459 NYQSNFXXXXXXXXXEHPYDSAQNRIQAASLISDNISAATAAITSD 504
             N Q            + P     + ++AA  +  N +AA AA  S+
Sbjct:   402 NQQ---LLIPNLFGPQAPPREMVDSVRAAIAMDPNFTAALAAAISN 444

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2018052 WRKY6 [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 150/488 (30%), Positives = 228/488 (46%)

Query:    59 FDEHEERIKLDINTGLNLSTANTTNERSRNVDTGISSRNIEHKKHDKKIKLAVLRADLNK 118
             F + + R+  + + G  +      ++R+ +V+TG++ R   + K D+      +  D   
Sbjct:    93 FSDKKSRVCREDDEGFRVKKEEQ-DDRT-DVNTGLNLRTTGNTKSDES-----MIDDGES 145

Query:   119 MSVENQRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMINGENVGVARQFM 178
               +E++R ++ L ++ ++ + + +    L +L    +++ S    +M     V + +Q  
Sbjct:   146 SEMEDKRAKNELVKLQDELKKMTMDNQKLREL--LTQVSNSYTSLQM---HLVSLMQQ-- 198

Query:   179 DLGQAGKDDHKVSLCNSSEDTTRFREF------KIVESME----ARSDDEIVALDDHQMG 228
                Q  +++  +      E+T   R+F      + V   E    + S+D   +       
Sbjct:   199 ---QQQQNNKVIEAAEKPEETIVPRQFIDLGPTRAVGEAEDVSNSSSEDRTRSGGSSAAE 255

Query:   229 KRNTSDRTEREVTPDDGQRAKKVPRFNNNNSSRDVEQAASQSQTTSMIXXXXXXXXXXXE 288
             +R+   R  RE +P+    + K+ + N+   +   +Q A  +   + +           E
Sbjct:   256 RRSNGKRLGREESPET--ESNKIQKVNSTTPTT-FDQTAEATMRKARVSVRARS-----E 307

Query:   289 ASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNH 348
             A MISDGCQWRKYGQKMAKGNPCPRAYYRCTMA+GCPVRKQVQRC++DR+IL+TTYEGNH
Sbjct:   308 APMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNH 367

Query:   349 NHPLPXXXXXXXXXXXXXXXXXXXXXXXXXDGLIMSPNLLAKNNVXXXXXXXXXXXXXXX 408
             NHPLP                         DG++   NLLA+  V               
Sbjct:   368 NHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARA-VLPCSTSMATISASAP 426

Query:   409 XXTVTLDLTHSP------NPLQ-----------FQRPLGQFHFTSPNNLPHNFVPMSHGL 451
               TVTLDLTHSP      NP              QRP  Q       NLP   +P  H +
Sbjct:   427 FPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQ--QMTNLPPGMLP--HVI 482

Query:   452 GPALIDNNYQSNFXXXXXXXXXEHPYDSAQNRIQAASLISDNISAATAAITSDPGFTAAL 511
             G AL +   QS F           P  +A ++  A   ++D I+A TA    DP FTAAL
Sbjct:   483 GQALYN---QSKFSGLQFSGGS--PSTAAFSQSHA---VADTITALTA----DPNFTAAL 530

Query:   512 VSAIASII 519
              + I+S+I
Sbjct:   531 AAVISSMI 538

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080169 "cellular response to boron-containing substance deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2034964 WRKY61 "WRKY DNA-binding protein 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 104/355 (29%), Positives = 158/355 (44%)

Query:   116 LNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQL--EPTG-KLAGSTAGR-EMINGENV 171
             +++   EN+RL+S L+++  D+  LQ     L     EPT  +  G    + E  + E V
Sbjct:     1 MDEAKEENRRLKSSLSKIKKDFDILQTQYNQLMAKHNEPTKFQSKGHHQDKGEDEDREKV 60

Query:   172 GVARQFMDLGQAGKDDHKVSLCNSSEDTTRFREFKIVESMEARSDDEIVALDDHQMG-KR 230
                 + + L    + + +V   ++ E+  +  + +  E      D+E  ++    MG + 
Sbjct:    61 NEREELVSLSLGRRLNSEVPSGSNKEEKNK--DVEEAEGDRNYDDNEKSSIQGLSMGIEY 118

Query:   231 NTSDRTEREVTPDDGQRAKKVPRFNNN-----NS---SRDVEQAASQSQTT--SMIXXXX 280
                     ++  D  Q    +   NNN     NS     D +    + +    +++    
Sbjct:   119 KALSNPNEKLEIDHNQETMSLEISNNNKIRSQNSFGFKNDGDDHEDEDEILPQNLVKKTR 178

Query:   281 XXXXXXXEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTIL 340
                    E   ++DGCQWRKYGQK+AKGNPCPRAYYRCT+A+ CPVRKQVQRCS+D +IL
Sbjct:   179 VSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSIL 238

Query:   341 MTTYEGNHNHPLPXXXXXXXXXXXXXXXXXXXXXXXXXDGLIMSPNL---LAKNNVXXXX 397
             ++TYEG HNHPLP                                 L   L+ NN+    
Sbjct:   239 ISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLHGLNFSLSGNNITPKP 298

Query:   398 XXXXXXXXXXXXX-TVTLDLTHSPNPLQ-FQRPLGQFHFTSPNNLPH-NFVPMSH 449
                           TVTLDLT S +  Q F   L +F  + P+N+   N  P ++
Sbjct:   299 KTHFLQSPSSSGHPTVTLDLTTSSSSQQPFLSMLNRFS-SPPSNVSRSNSYPSTN 352

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2150876 WRKY72 "WRKY DNA-binding protein 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.6e-34, P = 1.6e-34
 Identities = 111/436 (25%), Positives = 186/436 (42%)

Query:   108 KLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEPTGKLAGSTAGREMIN 167
             +L   +A+++++  EN++L+ +L ++ +DY++L+L    + Q EP+     +T  + M++
Sbjct:    35 ELESAKAEMSEVKEENEKLKGMLERIESDYKSLKLRFFDIIQQEPSNT---ATKNQNMVD 91

Query:   168 GENVGVARQFMDLGQAGKDDHKVSLC-----NSSEDTTRFREFKI-VESMEARSDDEI-- 219
                        DL    ++   VSL      +S  D+   +E K    S E  +D+E+  
Sbjct:    92 HPKPTTT----DLSSFDQERELVSLSLGRRSSSPSDSVPKKEEKTDAISAEVNADEELTK 147

Query:   220 ----VALDDHQMG--KRNTSDRTEREVTPDDGQRAKKVPRFNNNNSSRDVEQAASQSQTT 273
                 + +++   G  K   S         ++     KV    ++ +      A  ++   
Sbjct:   148 AGLTLGINNGNGGEPKEGLSMENRANSGSEEAWAPGKVTGKRSSPAPASGGDADGEAGQQ 207

Query:   274 SMIXXXXXXXXXXXEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRC 333
             + +           +   ++DGCQWRKYGQK+AKGNPCPRAYYRCT+A GCPVRKQVQRC
Sbjct:   208 NHVKRARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRC 267

Query:   334 SQDRTILMTTYEGNHNHPLPXXXXXXXXXXXXXXXXXXXXXXXXXDGLIMSPNLLAKNNV 393
             + D +IL+TTYEG H+H LP                            ++  NL   +  
Sbjct:   268 ADDMSILITTYEGTHSHSLPLSATTMASTTSAAASMLLSGSSSSPAAEMIGNNLYDNSRF 327

Query:   394 XXXXXXXXXXXXXXXXX-TVTLDLTHSPNPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLG 452
                               TVTLDLT   +       L   +F   +N    F   S    
Sbjct:   328 NNNNKSFYSPTLHSPLHPTVTLDLTAPQHSSSSSSSLLSLNFNKFSNSFQRFPSTSLNFS 387

Query:   453 PALIDNNYQSNFXXXXX-----XXXXEHPYDSAQ-NRIQAASLISDNISAA---TAAITS 503
                  ++  S                 +PY++ Q         + ++ S     T A+TS
Sbjct:   388 STSSTSSNPSTLNLPAIWGNGYSSYTPYPYNNVQFGTSNLGKTVQNSQSLTETLTKALTS 447

Query:   504 DPGFTAALVSAIASII 519
             DP F + + +AI++++
Sbjct:   448 DPSFHSVIAAAISTMV 463

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006952 "defense response" evidence=IMP

TAIR|locus:2199317 WRKY9 "WRKY DNA-binding protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 57/101 (56%), Positives = 71/101 (70%)

Query:   253 RFNNNNSSRDVEQAASQSQTTSMIXXXXXXXXXXXEASMISDGCQWRKYGQKMAKGNPCP 312
             R+N+++   ++ +  S SQ                E + ++DGCQWRKYGQK AKGNPCP
Sbjct:   198 RYNSSSLDMNMPRIISSSQGNRK---ARVSVRARCETATMNDGCQWRKYGQKTAKGNPCP 254

Query:   313 RAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLP 353
             RAYYRCT+A GCPVRKQVQRC +D +IL+TTYEG HNHPLP
Sbjct:   255 RAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLP 295

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2196779 WRKY36 "WRKY DNA-binding protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 102/354 (28%), Positives = 152/354 (42%)

Query:   104 DKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC-ALTQLEPTGKLAGSTAG 162
             DK+ +L   +A + K+  EN++L+ LL+ + N+Y +LQ+ +   L Q +    +      
Sbjct:    21 DKEEELDATKAKVEKVREENEKLKLLLSTILNNYNSLQMQVSKVLGQQQGASSMELDHID 80

Query:   163 REMINGE-NVGVARQFMDLGQAGKDDHKVSLCNSSEDTTRFREFKIVESMEARSDDEI-V 220
             R+  N + +V ++ +       G+ + K+S    ++   +     + ES + RS      
Sbjct:    81 RQDENNDYDVDISLRL------GRSEQKISKKEENK-VDKISTKNVEESKDKRSALGFGF 133

Query:   221 ALDDHQMGKRNTSDRTEREVTPDDG--QRAKKVPRFNNNNSSRDVEQAASQSQTTSMIXX 278
              +  ++  K +   R  +    ++      K V    N N    +E+     QT   +  
Sbjct:   134 QIQSYEASKLDDLCRQVKLANAENKCVSSRKDVKSVRNENHQDVLEE---HEQTG--LKK 188

Query:   279 XXXXXXXXXEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRT 338
                      E   I+DGCQWRKYGQK AK NP PRAYYRC+M+S CPVRKQVQRC ++ T
Sbjct:   189 TRVCVKASCEDPSINDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEET 248

Query:   339 -ILMTTYEGNHNHPLPXXXXXXXXXXXXXXXXXXXXXXXXXDGLIMSPNLLAKNNVXXXX 397
                MTTYEGNH+HPLP                              S +     +     
Sbjct:   249 SAFMTTYEGNHDHPLPMEASHMAAGTSAAASLLQSGSSSSSSSTSASLSYFFPFH----- 303

Query:   398 XXXXXXXXXXXXXTVTLDLTHS--PNPLQFQRPLGQFHFTSPNNLPHNFVPMSH 449
                          TVTLDLT    PN L    PL    F+   + P    P SH
Sbjct:   304 --HFSISTTNSHPTVTLDLTRPNYPNQLPDDYPLSSSSFSLNFSSPDPPPPSSH 355

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0015698 "inorganic anion transport" evidence=RCA

UNIPROTKB|Q6IEL0 WRKY71 "Transcription factor WRKY71" [Oryza sativa Indica Group (taxid:39946)]

 Score = 246 (91.7 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
 Identities = 40/63 (63%), Positives = 50/63 (79%)

Query:   291 MISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNH 350
             ++ DG QWRKYGQK+ K NPCPRAY+RC+ A  CPV+K+VQR ++D TIL+ TYEG HNH
Sbjct:   191 VVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPACPVKKKVQRSAEDNTILVATYEGEHNH 250

Query:   351 PLP 353
               P
Sbjct:   251 GQP 253

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0009685 "gibberellin metabolic process" evidence=IEP

TAIR|locus:2124874 WRKY18 "WRKY DNA-binding protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.3e-24, Sum P(3) = 2.3e-24
 Identities = 41/119 (34%), Positives = 65/119 (54%)

Query:   232 TSDRTEREVTPDDGQRAKKVPRFNNNNSSRDVEQAASQSQTTSMIXXXXXXXXXXXEASM 291
             +S +TE   + +D     +  +    N     ++  + S   + +            +  
Sbjct:   117 SSGKTENSSSNEDHHHHHQ--QHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTETSDTSLT 174

Query:   292 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNH 350
             + DG QWRKYGQK+ + NP PRAY+RC+ A  CPV+K+VQR ++D ++L+ TYEG HNH
Sbjct:   175 VKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNH 233

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XEC3	WRK42_ARATH	No assigned EC number	0.4525	0.8318	0.8617	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	547
smart00774	59	smart00774, WRKY, DNA binding domain	6e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	4e-33

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  124 bits (315), Expect = 6e-35
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 294 DGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNH 350
           DG QWRKYGQK+ KG+P PR+YYRCT   GCP +KQVQR   D +++  TYEG H H
Sbjct: 3   DGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  120 bits (302), Expect = 4e-33
 Identities = 38/61 (62%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 292 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHP 351
           + DG  WRKYGQK  KG+P PR+YYRCT   GCPV+KQV+R S D  I+  TYEG HNHP
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSP-GCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Query: 352 L 352
            
Sbjct: 60  K 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	547
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	94.17
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	90.85
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	84.97
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	82.08
COG4026	290	Uncharacterized protein containing TOPRIM domain,	81.59

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=1.9e-30  Score=207.93  Aligned_cols=59  Identities=59%  Similarity=1.214  Sum_probs=57.2

Q ss_pred             CCCCchhccccccccCCCCCCccceeccCCCCCCcccceeeecCCCcEEEEEeccCCCC
Q 008964          292 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNH  350 (547)
Q Consensus       292 ~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~~gC~arKqVqr~~~D~si~~~tY~G~HnH  350 (547)
                      ++|||+|||||||.|+|+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            37999999999999999999999999999789999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=8e-31  Score=210.49  Aligned_cols=59  Identities=63%  Similarity=1.265  Sum_probs=52.2

Q ss_pred             CCCCchhccccccccCCCCCCccceeccCCCCCCcccceeeecCCCcEEEEEeccCCCCC
Q 008964          292 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHP  351 (547)
Q Consensus       292 ~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~~gC~arKqVqr~~~D~si~~~tY~G~HnH~  351 (547)
                      ++|||+|||||||.|+|+++||+||||++ .+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~-~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTH-PGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEEC-TTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccc-cChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            47999999999999999999999999999 599999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=94.17  E-value=0.042  Score=46.06  Aligned_cols=32  Identities=41%  Similarity=0.697  Sum_probs=27.8

Q ss_pred             CCCCcccceeeecCCCcEEEEEeccCCCCCCCc
Q 008964          322 SGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPP  354 (547)
Q Consensus       322 ~gC~arKqVqr~~~D~si~~~tY~G~HnH~~p~  354 (547)
                      .+|+|+=.|-+.. |....++.+..+|||++-|
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P   91 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP   91 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence            5999999998877 7778899999999999754

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.85  E-value=0.12  Score=39.83  Aligned_cols=49  Identities=27%  Similarity=0.559  Sum_probs=25.6

Q ss_pred             CCCCchhccccccccCCCCCCccceeccCC--CCCCcccceeeecCCCcEEEEEeccCCCC
Q 008964          292 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMA--SGCPVRKQVQRCSQDRTILMTTYEGNHNH  350 (547)
Q Consensus       292 ~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~--~gC~arKqVqr~~~D~si~~~tY~G~HnH  350 (547)
                      +-|||.-+++...      ..+.|+||+..  .+|+|+=.+.  .++. .+ +...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~-~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RV-VRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EE-EE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EE-EECCCccCC
Confidence            4599988776555      44689999984  3799988777  3344 23 344499999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=84.97  E-value=4  Score=32.93  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=37.4

Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964          104 DKKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHL  144 (547)
Q Consensus       104 ~~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql  144 (547)
                      +++..+..|+.++..+..||..|+.-+..+...+..|+...
T Consensus        23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen   23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            36788999999999999999999999999999999998764

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=82.08  E-value=2.3  Score=41.30  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964          105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLH  143 (547)
Q Consensus       105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmq  143 (547)
                      -+.|++.|+.+++.+..||++|+.=+..|.++|.+|=..
T Consensus       109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I  147 (161)
T TIGR02894       109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI  147 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788899999999999999999999999999997443

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=81.59  E-value=3.2  Score=42.55  Aligned_cols=40  Identities=23%  Similarity=0.394  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964          108 KLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCAL  147 (547)
Q Consensus       108 eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~~l  147 (547)
                      ++..++++|.|+..||-+|-+||..+-..|..|..+|-.+
T Consensus       164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL  203 (290)
T COG4026         164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL  203 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence            4556667777778888899999999999999999998876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	547
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		9e-18
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-17

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 291 MISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNH 350
           +++DG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R S D  +L+TTYEG H+H
Sbjct: 13  IVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTKLLITTYEGKHDH 71
Query: 351 PLP 353
            +P
Sbjct: 72  DMP 74

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 288 EASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGN 347
           E  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R + D   ++TTYEG 
Sbjct: 13  EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGK 71
Query: 348 HNHPLP 353
           HNH LP
Sbjct: 72  HNHDLP 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	547
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	9e-46
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	3e-44
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  154 bits (390), Expect = 9e-46
 Identities = 39/77 (50%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 279 ARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRT 338
           +R+ V  ++   +++DG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R S D  
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTK 59

Query: 339 ILMTTYEGNHNHPLPPA 355
           +L+TTYEG H+H +PP 
Sbjct: 60  LLITTYEGKHDHDMPPG 76

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  150 bits (380), Expect = 3e-44
 Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 277 RRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQD 336
                 V+  SE  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R + D
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATD 60

Query: 337 RTILMTTYEGNHNHPLP 353
              ++TTYEG HNH LP
Sbjct: 61  PKAVVTTYEGKHNHDLP 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 85/646 (13%), Positives = 177/646 (27%), Gaps = 203/646 (31%)

Query: 6   DLINGEDHRDEKRV--VNEMNFFAHDDSQH---------------HHLKASDDRQETFRV 48
           D   GE     K +  V E  F  + D +                H + + D    T R+
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 49  -DRVKTESSSAFDEHEERIKLDINTG-LNLSTANTTNERSRNVDTGISSRNIEHKKHDKK 106
              + ++      +  E + L IN   L         + S      I  R+  +  +   
Sbjct: 68  FWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 107 IKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLCALTQLEP-----------TGK 155
            K  V R           +LR                  AL +L P           +GK
Sbjct: 127 AKYNVSRLQPYL------KLRQ-----------------ALLELRPAKNVLIDGVLGSGK 163

Query: 156 --LAGSTAGREMINGENVGVARQF------MDLGQAGKDDHKVSLCNSSEDTTRFREFKI 207
             +A            +  V  +       ++L            CNS E        ++
Sbjct: 164 TWVALDVC-------LSYKVQCKMDFKIFWLNLKN----------CNSPETV-----LEM 201

Query: 208 VESMEARSDDEIVALDDHQMGKRNTSDRTEREVTP--------------DDGQRAKKVPR 253
           ++ +  + D    +  DH    +      + E+                 + Q AK    
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 254 FNNN----NSSRDVEQAA-------------------SQSQTTSMIRRARVSVRA---RS 287
           FN +     ++R  +                      +  +  S++ +  +  R      
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPR 320

Query: 288 EA--------SMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRC--SQDR 337
           E         S+I+          +  +        ++        +   ++      + 
Sbjct: 321 EVLTTNPRRLSIIA----------ESIRDGLATWDNWKHVNCD--KLTTIIESSLNVLEP 368

Query: 338 TILMTTYEG----NHNHPLPPAAMSMASTTSAAASMLLSGSMPSADGLIMSPNLLAKNNV 393
                 ++       +  +P   +          S++    + S   +++  N L K ++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILL----------SLIWFDVIKSDVMVVV--NKLHKYSL 416

Query: 394 LPFSPSSASLSASAPFPTVTLDLT-HSPNPLQFQRPLGQFHFTSPNNLPHNFVPMSHGLG 452
           +   P  +++S     P++ L+L     N     R +   H+  P     +       L 
Sbjct: 417 VEKQPKESTIS----IPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSD------DLI 465

Query: 453 PALIDNNYQSNFLGL-LSSLGLEHPYDS----------AQNRIQAASLISDNISAATAA- 500
           P  +D  Y  + +G  L ++                   + +I+  S   +   +     
Sbjct: 466 PPYLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 501 ---------IT-SDPGFTAALVSAIASIIGNNDHQNHNGNNNSPST 536
                    I  +DP +   LV+AI   +   +         S  T
Sbjct: 525 QQLKFYKPYICDNDPKYE-RLVNAILDFLPKIEENLI----CSKYT 565

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	547
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	90.22
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	81.53

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-34  Score=240.07  Aligned_cols=75  Identities=52%  Similarity=1.123  Sum_probs=72.0

Q ss_pred             eeEEEEeccCCccCCCCchhccccccccCCCCCCccceeccCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCc
Q 008964          279 ARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPP  354 (547)
Q Consensus       279 ~rv~v~~~s~~~~~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~~gC~arKqVqr~~~D~si~~~tY~G~HnH~~p~  354 (547)
                      .||+|++.++.++++|||+|||||||.|||+++||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            378999999999999999999999999999999999999998 799999999999999999999999999999875

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=4.6e-34  Score=238.71  Aligned_cols=75  Identities=53%  Similarity=1.056  Sum_probs=68.8

Q ss_pred             eeEEEEeccCCccCCCCchhccccccccCCCCCCccceeccCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCc
Q 008964          279 ARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPP  354 (547)
Q Consensus       279 ~rv~v~~~s~~~~~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~~gC~arKqVqr~~~D~si~~~tY~G~HnH~~p~  354 (547)
                      .||.|+++++.++++|||+|||||||.|||+++||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478889999999999999999999999999999999999999 799999999999999999999999999999873

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=90.22  E-value=0.2  Score=42.16  Aligned_cols=28  Identities=14%  Similarity=0.322  Sum_probs=24.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964          107 IKLAVLRADLNKMSVENQRLRSLLNQVN  134 (547)
Q Consensus       107 ~eLa~Lq~EL~Rv~eENkRLK~MLsqV~  134 (547)
                      .++..+++||.++++||+.|++|++++.
T Consensus        41 ~~ie~~~eEi~~LkeEN~~L~el~~~~~   68 (79)
T 2zxx_A           41 KEIEQKDSEIARLRKENKDLAEVAEHVQ   68 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677789999999999999999999874

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=81.53  E-value=2.7  Score=32.81  Aligned_cols=41  Identities=22%  Similarity=0.271  Sum_probs=37.1

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008964          105 KKIKLAVLRADLNKMSVENQRLRSLLNQVNNDYRALQLHLC  145 (547)
Q Consensus       105 ~k~eLa~Lq~EL~Rv~eENkRLK~MLsqV~~nYnaLQmql~  145 (547)
                      ++..+..|+.+.+.+..||..|+.-+..+......|...|+
T Consensus        20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll   60 (61)
T 1t2k_D           20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56778899999999999999999999999999999988775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	547
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-32

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  116 bits (292), Expect = 2e-32
 Identities = 40/71 (56%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 283 VRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMT 342
           V+  SE  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R + D   ++T
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVT 59

Query: 343 TYEGNHNHPLP 353
           TYEG HNH LP
Sbjct: 60  TYEGKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	547
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.98

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.98  E-value=5e-34  Score=232.57  Aligned_cols=70  Identities=56%  Similarity=1.116  Sum_probs=65.9

Q ss_pred             EeccCCccCCCCchhccccccccCCCCCCccceeccCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCc
Q 008964          284 RARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCSQDRTILMTTYEGNHNHPLPP  354 (547)
Q Consensus       284 ~~~s~~~~~~DGy~WRKYGQK~iKGnp~PRsYYrCt~~~gC~arKqVqr~~~D~si~~~tY~G~HnH~~p~  354 (547)
                      ++.++.++++|||+|||||||.|||+++||+||||++ .+|+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         2 ~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           2 QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            4567888999999999999999999999999999998 799999999999999999999999999999773