Citrus Sinensis ID: 008966

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCVK
cccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHcHHHHHHccccHHHHHHHHHHHHcccHHcEEEEccccccccccccccEEEEcccccEEEEccccccccccccccccccccEEEEEEEEEcccccccccEEEEEcccccccccccccEEEEcccccccccccccccEEEEEEEEEEccccccccccEEcccccEEccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccc
cccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEEEEEEcccccccccccEEEEEccccccEEEEEccccccEEEccccccccccEEEEEEEEEEcccccccEEEEEEccccccccccccEEEccccccccccccccccccEEEEcccEccHHHHHHHHccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccc
MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLrssvdepaftdlhwgmfvpaikgqgtdeqhqkwLPLAYKMEIIGCYAqtelghgsnvqglettatfdpqtdefvihsptltsskwwpgglgkvsTHAVVYARLItdgqdhgvnGFIVQLrsledhsplpgitigdigmkfgngayntmdngvlrfehvriprnqMLMRVSQVTregkyvqsnvprqllYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRqfgsknggpetqVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRlqandfstlpeaHACTAGLKSLTTTATADGIEECRKlcgghgylcssglpelfavyvpactyegdnIVLLLQVARFLMKTVSqlgygnmpvgtttYMGRAEQLMQchcgvqkaedwlnpSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQqdipgkgvkPILEILCHIYALHLVHKHlgdfvstgciTAKQASLANEQLRSLYSQVFTCVK
mlsrkelfkntlrkaayAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTltsskwwpgglGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVtregkyvqsnvprqllYGTMVYVRQTIVADASCALSRAVCIATRYSAVrrqfgsknggpetQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQlrslysqvftcvk
MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFaelaadlveaavaHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCVK
*******FKNTLRKAAYAWKRIIELRLS************EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC**
MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF******PETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTD****************HACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS***********TTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVAC*************FAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV*
MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCVK
MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC**
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iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query547 2.2.26 [Sep-21-2011]
O65202664 Peroxisomal acyl-coenzyme yes no 0.989 0.814 0.828 0.0
Q9ZQP2664 Putative peroxisomal acyl no no 0.990 0.816 0.802 0.0
Q5RC19660 Peroxisomal acyl-coenzyme yes no 0.981 0.813 0.427 1e-130
P07872661 Peroxisomal acyl-coenzyme yes no 0.981 0.812 0.432 1e-129
Q15067660 Peroxisomal acyl-coenzyme yes no 0.981 0.813 0.427 1e-129
Q9R0H0661 Peroxisomal acyl-coenzyme yes no 0.974 0.806 0.428 1e-128
Q8HYL8661 Peroxisomal acyl-coenzyme N/A no 0.976 0.807 0.421 1e-127
Q3SZP5660 Peroxisomal acyl-coenzyme yes no 0.981 0.813 0.420 1e-127
Q9Z1N0661 Peroxisomal acyl-coenzyme yes no 0.978 0.809 0.429 1e-126
Q9QXD1681 Peroxisomal acyl-coenzyme no no 0.952 0.765 0.388 1e-102
>sp|O65202|ACOX1_ARATH Peroxisomal acyl-coenzyme A oxidase 1 OS=Arabidopsis thaliana GN=ACX1 PE=1 SV=1 Back     alignment and function desciption
 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/541 (82%), Positives = 497/541 (91%)

Query: 2   LSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGT 61
           LSRKELFK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT
Sbjct: 56  LSRKELFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGT 115

Query: 62  DEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWW 121
           +EQ +KWL LA KM+IIGCYAQTELGHGSNVQGLETTATFDP+TDEFVIH+PT T+SKWW
Sbjct: 116 EEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHTPTQTASKWW 175

Query: 122 PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN 181
           PGGLGKVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN
Sbjct: 176 PGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYN 235

Query: 182 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCA 241
           +MDNG L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS A
Sbjct: 236 SMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNA 295

Query: 242 LSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 301
           LSRAVCIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY
Sbjct: 296 LSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 355

Query: 302 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFA 361
           TDVT+RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL  SGLPELFA
Sbjct: 356 TDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFA 415

Query: 362 VYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAE 421
           VYVPACTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA  L+QC  GVQKAE
Sbjct: 416 VYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAE 475

Query: 422 DWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKF 481
           DWLNP  +LEAFEARA+RM+V CA+NLSKF NQE+GF EL ADLVEAA+AHCQLIVVSKF
Sbjct: 476 DWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSKF 535

Query: 482 IEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQ 541
           I KL+QDI GKGVK  L  LC+IYAL+L+HKHLGDF+ST CIT KQASLAN+QLRSLY+Q
Sbjct: 536 IAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLANDQLRSLYTQ 595

Query: 542 V 542
           V
Sbjct: 596 V 596
Catalyzes the desaturation of both long- and medium-chain acyl-CoAs to 2-trans-enoyl-CoAs. Most active with C14-CoA. Activity on long-chain mono-unsaturated substrates is 40% higher than with the corresponding saturated substrates. Seems to be an important factor in the general metabolism of root tips. May be involved in the biosynthesis of jasmonic acid.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6
>sp|Q9ZQP2|ACO12_ARATH Putative peroxisomal acyl-coenzyme A oxidase 1.2 OS=Arabidopsis thaliana GN=ACX1.2 PE=2 SV=1 Back     alignment and function description
>sp|Q5RC19|ACOX1_PONAB Peroxisomal acyl-coenzyme A oxidase 1 OS=Pongo abelii GN=ACOX1 PE=2 SV=2 Back     alignment and function description
>sp|P07872|ACOX1_RAT Peroxisomal acyl-coenzyme A oxidase 1 OS=Rattus norvegicus GN=Acox1 PE=1 SV=1 Back     alignment and function description
>sp|Q15067|ACOX1_HUMAN Peroxisomal acyl-coenzyme A oxidase 1 OS=Homo sapiens GN=ACOX1 PE=1 SV=3 Back     alignment and function description
>sp|Q9R0H0|ACOX1_MOUSE Peroxisomal acyl-coenzyme A oxidase 1 OS=Mus musculus GN=Acox1 PE=1 SV=5 Back     alignment and function description
>sp|Q8HYL8|ACOX1_PHACI Peroxisomal acyl-coenzyme A oxidase 1 OS=Phascolarctos cinereus GN=ACOX1 PE=1 SV=2 Back     alignment and function description
>sp|Q3SZP5|ACOX1_BOVIN Peroxisomal acyl-coenzyme A oxidase 1 OS=Bos taurus GN=ACOX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z1N0|ACOX1_CAVPO Peroxisomal acyl-coenzyme A oxidase 1 OS=Cavia porcellus GN=ACOX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9QXD1|ACOX2_MOUSE Peroxisomal acyl-coenzyme A oxidase 2 OS=Mus musculus GN=Acox2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
147866564 664 hypothetical protein VITISV_000871 [Viti 0.989 0.814 0.894 0.0
321438027 664 ACX [Gossypium hirsutum] 0.990 0.816 0.870 0.0
350535511 664 peroxisomal acyl-CoA oxidase 1A [Solanum 0.990 0.816 0.872 0.0
109157676 683 Chain A, X-Ray Crystal Structure Of Leac 0.990 0.793 0.872 0.0
58531952 664 peroxisomal acyl-CoA oxidase 1A [Solanum 0.990 0.816 0.870 0.0
357482107 664 Peroxisomal acyl-CoA oxidase 1A [Medicag 0.989 0.814 0.868 0.0
357476797 664 Peroxisomal acyl-CoA oxidase 1A [Medicag 0.990 0.816 0.867 0.0
402744131 664 acyl-CoA oxidase 1 [Prunus persica] 0.990 0.816 0.859 0.0
224138652 664 predicted protein [Populus trichocarpa] 0.989 0.814 0.866 0.0
351725645 665 acyl-CoA oxidase [Glycine max] gi|155534 0.990 0.815 0.869 0.0
>gi|147866564|emb|CAN79431.1| hypothetical protein VITISV_000871 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/541 (89%), Positives = 512/541 (94%)

Query: 1   MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQG 60
           MLSRK+LFKNTLRKAA+AWKRIIELRLSE+EAS LR  +DEPAFTDLHWGMFVPAIKGQG
Sbjct: 55  MLSRKDLFKNTLRKAAHAWKRIIELRLSEQEASWLRFYIDEPAFTDLHWGMFVPAIKGQG 114

Query: 61  TDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKW 120
           TDEQ QKWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFD Q+DEFVIHSPTLTSSKW
Sbjct: 115 TDEQQQKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDSQSDEFVIHSPTLTSSKW 174

Query: 121 WPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY 180
           WPGGLGKVSTHAVVYARLITDGQDHGV+GFIVQLRSLEDH PLPGITIGDIGMKFGNG Y
Sbjct: 175 WPGGLGKVSTHAVVYARLITDGQDHGVHGFIVQLRSLEDHLPLPGITIGDIGMKFGNGGY 234

Query: 181 NTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASC 240
           N+MDNGVLRF+HVRIPR+QMLMRV QVTREGK VQSNVPRQL+YGTMV+VRQTIV+DAS 
Sbjct: 235 NSMDNGVLRFDHVRIPRDQMLMRVFQVTREGKCVQSNVPRQLVYGTMVFVRQTIVSDASS 294

Query: 241 ALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWL 300
           ALSRAVCIATRYS VRRQFGS+NGGPETQVIDYKTQQ+RLFPLLASAYAFRFVG+WLKWL
Sbjct: 295 ALSRAVCIATRYSVVRRQFGSQNGGPETQVIDYKTQQSRLFPLLASAYAFRFVGQWLKWL 354

Query: 301 YTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELF 360
           Y DVTQRLQANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLCSSGLPELF
Sbjct: 355 YMDVTQRLQANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELF 414

Query: 361 AVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 420
           AVYVPACTYEGDNIVLLLQVARFLMKTVSQLG G  PVGTT YMGR   LMQC C VQ+A
Sbjct: 415 AVYVPACTYEGDNIVLLLQVARFLMKTVSQLGSGKQPVGTTAYMGRVADLMQCCCAVQRA 474

Query: 421 EDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK 480
           EDWLNPS ILEAFEAR+ RMSVACAQNLSKF N EEGFAEL+ADLVEAAVAHCQLIVVSK
Sbjct: 475 EDWLNPSVILEAFEARSARMSVACAQNLSKFANSEEGFAELSADLVEAAVAHCQLIVVSK 534

Query: 481 FIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYS 540
           FIEKLQ+DIPGKGVK  LEILC+IYAL+L+HK++GDF+ST CIT KQASLANEQLRSLY+
Sbjct: 535 FIEKLQEDIPGKGVKRQLEILCNIYALYLLHKYVGDFLSTSCITPKQASLANEQLRSLYA 594

Query: 541 Q 541
           Q
Sbjct: 595 Q 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|321438027|gb|ADW84019.1| ACX [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|350535511|ref|NP_001234198.1| peroxisomal acyl-CoA oxidase 1A [Solanum lycopersicum] gi|58531948|gb|AAW78689.1| peroxisomal acyl-CoA oxidase 1A [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|109157676|pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) gi|109157677|pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) gi|109157678|pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Back     alignment and taxonomy information
>gi|58531952|gb|AAW78691.1| peroxisomal acyl-CoA oxidase 1A [Solanum cheesmaniae] Back     alignment and taxonomy information
>gi|357482107|ref|XP_003611339.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] gi|355512674|gb|AES94297.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] Back     alignment and taxonomy information
>gi|357476797|ref|XP_003608684.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] gi|355509739|gb|AES90881.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] Back     alignment and taxonomy information
>gi|402744131|gb|AFQ93693.1| acyl-CoA oxidase 1 [Prunus persica] Back     alignment and taxonomy information
>gi|224138652|ref|XP_002326656.1| predicted protein [Populus trichocarpa] gi|222833978|gb|EEE72455.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351725645|ref|NP_001235564.1| acyl-CoA oxidase [Glycine max] gi|15553480|gb|AAL01888.1|AF404404_1 acyl-CoA oxidase [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
TAIR|locus:2129121664 ACX1 "acyl-CoA oxidase 1" [Ara 0.989 0.814 0.809 6.5e-241
TAIR|locus:2058779664 ACX5 "acyl-CoA oxidase 5" [Ara 0.990 0.816 0.784 6.2e-236
UNIPROTKB|F1NY37662 ACOX1 "Acyl-coenzyme A oxidase 0.978 0.808 0.445 2.8e-121
UNIPROTKB|F1P668661 ACOX1 "Acyl-coenzyme A oxidase 0.979 0.810 0.426 4.9e-117
RGD|619757661 Acox1 "acyl-CoA oxidase 1, pal 0.978 0.809 0.429 7.9e-117
UNIPROTKB|P07872661 Acox1 "Peroxisomal acyl-coenzy 0.978 0.809 0.429 7.9e-117
UNIPROTKB|Q5RC19660 ACOX1 "Peroxisomal acyl-coenzy 0.979 0.812 0.419 1e-116
UNIPROTKB|E2RAF6661 ACOX1 "Acyl-coenzyme A oxidase 0.979 0.810 0.422 1.6e-116
UNIPROTKB|Q15067660 ACOX1 "Peroxisomal acyl-coenzy 0.979 0.812 0.419 2.1e-116
MGI|MGI:1330812661 Acox1 "acyl-Coenzyme A oxidase 0.970 0.803 0.425 1.5e-115
TAIR|locus:2129121 ACX1 "acyl-CoA oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2322 (822.4 bits), Expect = 6.5e-241, P = 6.5e-241
 Identities = 438/541 (80%), Positives = 486/541 (89%)

Query:     2 LSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGT 61
             LSRKELFK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT
Sbjct:    56 LSRKELFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGT 115

Query:    62 DEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWW 121
             +EQ +KWL LA KM+IIGCYAQTELGHGSNVQGLETTATFDP+TDEFVIH+PT T+SKWW
Sbjct:   116 EEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHTPTQTASKWW 175

Query:   122 PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN 181
             PGGLGKVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN
Sbjct:   176 PGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYN 235

Query:   182 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCA 241
             +MDNG L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS A
Sbjct:   236 SMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNA 295

Query:   242 LSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 301
             LSRAVCIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY
Sbjct:   296 LSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 355

Query:   302 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFA 361
             TDVT+RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL  SGLPELFA
Sbjct:   356 TDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFA 415

Query:   362 VYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAE 421
             VYVPACTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA  L+QC  GVQKAE
Sbjct:   416 VYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAE 475

Query:   422 DWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFXXXXXXXXXXXXXHCQLIVVSKF 481
             DWLNP  +LEAFEARA+RM+V CA+NLSKF NQE+GF             HCQLIVVSKF
Sbjct:   476 DWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSKF 535

Query:   482 IEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQ 541
             I KL+QDI GKGVK  L  LC+IYAL+L+HKHLGDF+ST CIT KQASLAN+QLRSLY+Q
Sbjct:   536 IAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLANDQLRSLYTQ 595

Query:   542 V 542
             V
Sbjct:   596 V 596
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0003997 "acyl-CoA oxidase activity" evidence=IEA;ISS;IMP;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006631 "fatty acid metabolic process" evidence=IEA
GO:0006635 "fatty acid beta-oxidation" evidence=IEA;IDA;NAS
GO:0008152 "metabolic process" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IMP
GO:0005777 "peroxisome" evidence=ISS;IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0002213 "defense response to insect" evidence=IGI;RCA
GO:0009555 "pollen development" evidence=IGI
GO:0009620 "response to fungus" evidence=IEP;RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006633 "fatty acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2058779 ACX5 "acyl-CoA oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NY37 ACOX1 "Acyl-coenzyme A oxidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P668 ACOX1 "Acyl-coenzyme A oxidase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|619757 Acox1 "acyl-CoA oxidase 1, palmitoyl" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P07872 Acox1 "Peroxisomal acyl-coenzyme A oxidase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RC19 ACOX1 "Peroxisomal acyl-coenzyme A oxidase 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAF6 ACOX1 "Acyl-coenzyme A oxidase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q15067 ACOX1 "Peroxisomal acyl-coenzyme A oxidase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1330812 Acox1 "acyl-Coenzyme A oxidase 1, palmitoyl" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q15067ACOX1_HUMAN1, ., 3, ., 3, ., 60.42750.98170.8136yesno
Q9Z1N0ACOX1_CAVPO1, ., 3, ., 3, ., 60.42960.97800.8093yesno
Q9ZQP2ACO12_ARATH1, ., 3, ., 3, ., 60.80250.99080.8162nono
Q9R0H0ACOX1_MOUSE1, ., 3, ., 3, ., 60.42880.97440.8063yesno
O65202ACOX1_ARATH1, ., 3, ., 3, ., 60.82800.98900.8147yesno
P07872ACOX1_RAT1, ., 3, ., 3, ., 60.43290.98170.8124yesno
Q5RC19ACOX1_PONAB1, ., 3, ., 3, ., 60.42750.98170.8136yesno
Q3SZP5ACOX1_BOVIN1, ., 3, ., 3, ., 60.42020.98170.8136yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.30.691
3rd Layer1.3.3.60.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
PLN02443664 PLN02443, PLN02443, acyl-coenzyme A oxidase 0.0
cd01150610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 0.0
PTZ00460646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 1e-121
PLN02636686 PLN02636, PLN02636, acyl-coenzyme A oxidase 3e-90
PLN02312680 PLN02312, PLN02312, acyl-CoA oxidase 5e-74
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 4e-45
pfam01756186 pfam01756, ACOX, Acyl-CoA oxidase 5e-32
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 2e-22
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 6e-16
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 8e-16
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 1e-15
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 2e-13
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 9e-12
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 1e-10
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 2e-10
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 5e-09
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 2e-08
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 7e-08
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 2e-05
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 8e-04
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information 
 Score = 1156 bits (2991), Expect = 0.0
 Identities = 479/542 (88%), Positives = 516/542 (95%)

Query: 1   MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQG 60
            LSRKELFKNTLRKAA+AWKRIIELRL+EEEA  LRS VDEP +TDLHWGMFVPAIKGQG
Sbjct: 55  RLSRKELFKNTLRKAAHAWKRIIELRLTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQG 114

Query: 61  TDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKW 120
           T+EQ +KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDP+TDEFVIHSPTLTSSKW
Sbjct: 115 TEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKW 174

Query: 121 WPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY 180
           WPGGLGKVSTHAVVYARLIT+G+DHG++GFIVQLRSL+DHSPLPG+T+GDIGMKFGNGAY
Sbjct: 175 WPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAY 234

Query: 181 NTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASC 240
           NTMDNG LRF+HVRIPR+QMLMR+S+VTREGKYVQS+VPRQL+YGTMVYVRQTIVADAS 
Sbjct: 235 NTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADAST 294

Query: 241 ALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWL 300
           ALSRAVCIATRYSAVRRQFGS++GGPETQVIDYKTQQ+RLFPLLASAYAFRFVGEWLKWL
Sbjct: 295 ALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWL 354

Query: 301 YTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELF 360
           YTDVTQRL+ANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLCSSGLPELF
Sbjct: 355 YTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELF 414

Query: 361 AVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 420
           AVYVPACTYEGDN+VLLLQVARFLMKTVSQLG G  PVGTT YMGR + L+QC CGVQ A
Sbjct: 415 AVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYMGRVQHLLQCRCGVQTA 474

Query: 421 EDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK 480
           EDWLNPS +LEAFEARA RM+V CAQNLSKF NQE GF EL+ADLVEAAVAHCQLIVVSK
Sbjct: 475 EDWLNPSVVLEAFEARAARMAVTCAQNLSKFENQEAGFQELSADLVEAAVAHCQLIVVSK 534

Query: 481 FIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYS 540
           FIEKLQQDIPGKGVK  L+ LC+IYAL+L+HKHLGDF+STGCIT KQASLAN+QLRSLYS
Sbjct: 535 FIEKLQQDIPGKGVKKQLQNLCYIYALYLLHKHLGDFLSTGCITPKQASLANDQLRSLYS 594

Query: 541 QV 542
           QV
Sbjct: 595 QV 596

Length = 664
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|201956 pfam01756, ACOX, Acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 547
KOG0136670 consensus Acyl-CoA oxidase [Lipid transport and me 100.0
PLN02443664 acyl-coenzyme A oxidase 100.0
PTZ00460646 acyl-CoA dehydrogenase; Provisional 100.0
KOG0135661 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t 100.0
PLN02636686 acyl-coenzyme A oxidase 100.0
PLN02312680 acyl-CoA oxidase 100.0
cd01150610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
KOG0139398 consensus Short-chain acyl-CoA dehydrogenase [Lipi 100.0
KOG0140408 consensus Medium-chain acyl-CoA dehydrogenase [Lip 100.0
KOG0141421 consensus Isovaleryl-CoA dehydrogenase [Amino acid 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
KOG0137634 consensus Very-long-chain acyl-CoA dehydrogenase [ 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
KOG0138432 consensus Glutaryl-CoA dehydrogenase [Amino acid t 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
PTZ00456622 acyl-CoA dehydrogenase; Provisional 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
PTZ00457520 acyl-CoA dehydrogenase; Provisional 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
KOG1469392 consensus Predicted acyl-CoA dehydrogenase [Genera 100.0
PF01756187 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-C 99.91
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.86
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.85
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.44
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.41
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 99.16
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 98.68
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 98.64
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 97.6
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 97.58
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 86.13
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7e-110  Score=855.18  Aligned_cols=537  Identities=52%  Similarity=0.808  Sum_probs=505.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHcCCCHHH-----HhhhhhhcCCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhcc
Q 008966            1 MLSRKELFKNTLRKAAYAWKRIIELRLSEEE-----ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM   75 (547)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g   75 (547)
                      +|||+|+|+...++..+.++.+.++.+..+.     +.....+...+.|+.+|++||+++|...||+||.++|+++..+.
T Consensus        62 ~~sr~E~~~~~~Rk~~~~~~~~~el~~~~d~~~~~~~~~~~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~  141 (670)
T KOG0136|consen   62 FMSREERYENTVRKLARLTKKMRELQDNTDNENKLLGLLARVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNM  141 (670)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhHHHhhccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccc
Confidence            6899999999999999999999998876221     22223344569999999999999999999999999999999999


Q ss_pred             ceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeec
Q 008966           76 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR  155 (547)
Q Consensus        76 ~~~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r  155 (547)
                      +|+||||+||+|||||+++++|||+|||.+++|||||||.++.|||+++||+.|+|++|+|+++.+|+++|+|+|+||+|
T Consensus       142 ~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lR  221 (670)
T KOG0136|consen  142 EIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLR  221 (670)
T ss_pred             eEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHH
Q 008966          156 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV  235 (547)
Q Consensus       156 ~~~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~  235 (547)
                      |+++|.++|||+|+|+++|+|   ++|+|||++.|||||||++|||+++++|.++|.|+.+..++ +.|++|.+.|..++
T Consensus       222 d~~th~pL~Gi~iGDIG~Kmg---~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv  297 (670)
T KOG0136|consen  222 DEDTHKPLPGITVGDIGPKMG---FNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMV  297 (670)
T ss_pred             CccccCCCCCCeecCCCcccc---ccCCccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhH
Confidence            999999999999999999999   99999999999999999999999999999999999988887 99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 008966          236 ADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST  315 (547)
Q Consensus       236 a~~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (547)
                      ....-.+.+|++||+||+.+|+|+...++.+|++|+|||+||+||+|.+|.+||++++..++.++|.+..+++..++.+.
T Consensus       298 ~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~  377 (670)
T KOG0136|consen  298 MDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSR  377 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHHHhcCCC
Q 008966          316 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGN  395 (547)
Q Consensus       316 ~~~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~  395 (547)
                      ++|+|++++++|+.+||.+.+.++.||++||||||+..|+++.+|..+.+.|||||+|.||++|+||+|+|.+.+..+|+
T Consensus       378 LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk  457 (670)
T KOG0136|consen  378 LPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGK  457 (670)
T ss_pred             chHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccchhHHhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHh----hhcCChHhHHHHHHHHHHHHHHH
Q 008966          396 MPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNL----SKFTNQEEGFAELAADLVEAAVA  471 (547)
Q Consensus       396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l----~~~~~~~~~~n~~~~~~~~la~a  471 (547)
                      ++.++++|+.......   .......+|.+ + ++++|+++|.+++..+++++    +.+.+.+.+||.++++++++|++
T Consensus       458 ~l~~~v~yl~~~~~~~---~~~~~~~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~Aa~~  532 (670)
T KOG0136|consen  458 SLSPTVAYLAASALKP---QLISGAGDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTRAARA  532 (670)
T ss_pred             CCCCchhhhhhcccCc---cccccccchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence            8888999997543211   11123467766 5 99999999999999998885    45678899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhhHHhc-CCCCHHHHHHHHHHHHHHHHhhcCCC
Q 008966          472 HCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVST-GCITAKQASLANEQLRSLYSQVFTCV  546 (547)
Q Consensus       472 ~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~-~~ls~~~~~~l~~~i~~l~~~Lrp~~  546 (547)
                      |+++++++.|++.|.+...++++++||++||.||+++.|.+++|+|+.. +|+|+.|++.++.++++++++|||+|
T Consensus       533 H~~~~vvk~f~~kv~~~~~~~~vk~vL~~L~~Ly~~y~il~~~g~fl~~~~~mt~~q~~~v~~~l~~lL~~iRpnA  608 (670)
T KOG0136|consen  533 HCRLFVVKTFLEKVEKHISDPAVKEVLKNLLELYLLYEILKNSGDFLRFNNFMTDTQLDQVRDQLYELLTKIRPNA  608 (670)
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcCe
Confidence            9999999999999997567889999999999999999999999999998 99999999999999999999999997

>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] Back     alignment and domain information
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18 Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
2fon_A683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 0.0
1w07_A659 Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 0.0
1is2_A661 Crystal Structure Of Peroxisomal Acyl-coa Oxidase-i 1e-128
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 7e-10
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 8e-10
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 3e-09
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 4e-09
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 1e-08
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 1e-08
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 2e-08
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 2e-08
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 3e-08
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 3e-08
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 3e-08
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 3e-08
3b96_A587 Structural Basis For Substrate Fatty-Acyl Chain Spe 6e-07
2uxw_A607 Crystal Structure Of Human Very Long Chain Acyl-coa 7e-07
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 3e-06
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 3e-06
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 8e-06
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 8e-06
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 9e-06
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 1e-05
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 3e-05
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 4e-05
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 4e-05
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 4e-05
2z1q_A577 Crystal Structure Of Acyl Coa Dehydrogenase Length 7e-05
3owa_A597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 8e-05
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 5e-04
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure 
Iteration: 1

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/542 (84%), Positives = 499/542 (92%)
Query: 1   MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQG 60
           ML RKELFKNTLRKAAYAWKRIIELRLS+EEA+MLR  VDEPAFTDLHWGMF+PAIKGQG
Sbjct: 74  MLPRKELFKNTLRKAAYAWKRIIELRLSQEEATMLRRYVDEPAFTDLHWGMFIPAIKGQG 133
Query: 61  TDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKW 120
           TD+Q +KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKW
Sbjct: 134 TDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKW 193
Query: 121 WPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY 180
           WPGGLGKVSTHAVVYARLITDG+D+GVNGFIVQLRSLEDH PLPG+T+GDIGMKFGNGAY
Sbjct: 194 WPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGNGAY 253
Query: 181 NTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASC 240
           N+MDNGVL F+HVRIPR+QMLMRVSQVT+EGKYVQS++PRQLLYGTMVYVRQ+IVADAS 
Sbjct: 254 NSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQSIVADASL 313
Query: 241 ALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWL 300
           A+SRAVCIATRYSAVRRQFGS+NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWL
Sbjct: 314 AMSRAVCIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWL 373
Query: 301 YTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELF 360
           YTDVTQRL ANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLCSSGLPELF
Sbjct: 374 YTDVTQRLAANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELF 433
Query: 361 AVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 420
           AVYVPACTYEGDN+VL LQVARFLMKT+SQLG G  PVGT +YMGR E LMQC   V++A
Sbjct: 434 AVYVPACTYEGDNVVLQLQVARFLMKTISQLGTGKKPVGTVSYMGRIEHLMQCRSDVKQA 493
Query: 421 EDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFXXXXXXXXXXXXXHCQLIVVSK 480
           EDWL PSA+LEAFEAR+ RMSVACA+NLSKF NQEEGF             HCQLIVVSK
Sbjct: 494 EDWLKPSAVLEAFEARSARMSVACAKNLSKFENQEEGFAELAADLVEAAVAHCQLIVVSK 553
Query: 481 FIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYS 540
           +IEKLQQ+IPGKGVK  LE+LC IY+L ++HKH GDF+ TG IT+KQ SLAN+QLR+LYS
Sbjct: 554 YIEKLQQNIPGKGVKQQLEVLCGIYSLFILHKHQGDFLGTGYITSKQGSLANDQLRALYS 613
Query: 541 QV 542
           Q+
Sbjct: 614 QL 615
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 Back     alignment and structure
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From Rat Liver Length = 661 Back     alignment and structure
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
1w07_A659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 0.0
2ddh_A661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 0.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 9e-22
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 1e-21
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 1e-21
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 6e-21
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 1e-20
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 7e-20
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 1e-18
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 1e-18
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 2e-18
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 2e-18
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 3e-18
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 5e-18
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 1e-17
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 4e-17
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 2e-16
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 3e-16
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 3e-16
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 3e-16
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 9e-16
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 4e-15
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 6e-15
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 7e-15
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 7e-15
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 7e-15
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 8e-15
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 1e-14
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 5e-14
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 9e-14
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 6e-11
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
 Score =  699 bits (1806), Expect = 0.0
 Identities = 447/541 (82%), Positives = 496/541 (91%)

Query: 2   LSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGT 61
           LSRKELFK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT
Sbjct: 56  LSRKELFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGT 115

Query: 62  DEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWW 121
           +EQ +KWL LA KM+IIGCYAQTELGHGSNVQGLETTAT DP+TDEFVIH+PT T+SKWW
Sbjct: 116 EEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWW 175

Query: 122 PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN 181
           PGGLGKVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN
Sbjct: 176 PGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYN 235

Query: 182 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCA 241
           +MDNG L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS A
Sbjct: 236 SMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNA 295

Query: 242 LSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 301
           LSRAVCIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY
Sbjct: 296 LSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 355

Query: 302 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFA 361
           TDVT+RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL  SGLPELFA
Sbjct: 356 TDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFA 415

Query: 362 VYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAE 421
           VYVPACTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA  L+QC  GVQKAE
Sbjct: 416 VYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAE 475

Query: 422 DWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKF 481
           DWLNP  +LEAFEARA+RM+V CA+NLSKF NQE+GF EL ADLVEAA+AHCQLIVVSKF
Sbjct: 476 DWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSKF 535

Query: 482 IEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQ 541
           I KL+QDI GKGVK  L  LC+IYAL+L+HKHLGDF+ST CIT KQASLAN+QLRSLY+Q
Sbjct: 536 IAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLANDQLRSLYTQ 595

Query: 542 V 542
           V
Sbjct: 596 V 596
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
2ddh_A661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1w07_A659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 99.96
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.89
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 85.23
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
Probab=100.00  E-value=3e-92  Score=779.33  Aligned_cols=541  Identities=45%  Similarity=0.765  Sum_probs=471.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHcCCCH-HHHhhhhhhcCC--cchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccce
Q 008966            1 MLSRKELFKNTLRKAAYAWKRIIELRLSE-EEASMLRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEI   77 (547)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~--~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~   77 (547)
                      +++++|+++...++.+++.+.+.++|+.. .+......+++.  +.|+.+|+++++++|..+||++|+++|||++.+|++
T Consensus        53 ~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~  132 (661)
T 2ddh_A           53 FLTRSQRYEVAVKKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEI  132 (661)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTCCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhccchhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCe
Confidence            47899999999999999988888888873 332224444443  788999999999999999999999999999999999


Q ss_pred             eeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecCC
Q 008966           78 IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSL  157 (547)
Q Consensus        78 ~g~~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~~  157 (547)
                      ++|||+|||+||||+.+++|+|++|+++|+|+||||+++|+|+||||++.+||+++|+|++.++++++|+++|+||+||.
T Consensus       133 ~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~  212 (661)
T 2ddh_A          133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREI  212 (661)
T ss_dssp             CEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCT
T ss_pred             eEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccc
Confidence            99999999999999999999999998889999999999999999998778999999999998776678999999999999


Q ss_pred             CCCCCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccCchhhHHHHHHHHHHHHHHHH
Q 008966          158 EDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD  237 (547)
Q Consensus       158 ~~~~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~~~~~~~~~~l~~~r~~~~a~  237 (547)
                      ++|.+.|||+|+++|+|+|   ++++++++|.||||+||++++|+++++|.++|.+..+...+ ..+..|..+|+.+++.
T Consensus       213 ~~~~~~pGV~v~~~~~k~G---l~g~~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~-~~~~~l~~~R~~iaa~  288 (661)
T 2ddh_A          213 GTHKPLPGITVGDIGPKFG---YEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-LTYGTMVFVRSFLVGN  288 (661)
T ss_dssp             TTCCBCTTEEEEECCCCSS---CTTCCCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC---------CHHHHHHHHHH
T ss_pred             cCCCCCCCeEEecCccccc---CCCCcceEEEeccEEECHHHhcCcccccCCCCceeccchHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999   99999999999999999999999988887788886543333 6677888999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChh
Q 008966          238 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLP  317 (547)
Q Consensus       238 ~~g~~~~al~~a~~y~~~R~qfg~~~~~~e~~i~~~~~~q~~l~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (547)
                      ++|++++|++++++|+..|+|||.+++.+|.||++||.+|++|+++++.++++++++++++..+++.....+.++.....
T Consensus       289 ~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~  368 (661)
T 2ddh_A          289 AAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELP  368 (661)
T ss_dssp             HHHHHHHHHHHHHHHHHHCBCSCSSTTSCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHH
T ss_pred             HHHHHHHHHHHHHHHHhhCcccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Confidence            99999999999999999999999877788999999999999999999999999999999998886543322223333335


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccCChhhhcccccccccccchhHHHHHHHHHHHHHHHHHhcCCCCC
Q 008966          318 EAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMP  397 (547)
Q Consensus       318 ~~~~~~~~~K~~~t~~a~~~~~~~~~~~Gg~G~~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~  397 (547)
                      +.+..++++|+++++.+.++++.|+|+|||+||+.+++++++|||+++.+++||+|+++++++|+.+|+.+++..++...
T Consensus       369 ~~~~~aa~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~lL~~~~~~~~~~~~  448 (661)
T 2ddh_A          369 ELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLV  448 (661)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCcHHHHHHhcceeeEecCchHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999887777666


Q ss_pred             ccccccccchh-HHhhhcC--CccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhh----hcCChHhHHHHHHHHHHHHHH
Q 008966          398 VGTTTYMGRAE-QLMQCHC--GVQKAEDWLNPSAILEAFEARAIRMSVACAQNLS----KFTNQEEGFAELAADLVEAAV  470 (547)
Q Consensus       398 ~~~~~~l~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~----~~~~~~~~~n~~~~~~~~la~  470 (547)
                      .++++||.+.. .....++  ...+..++.|+++++++|++|+++++..++++++    ++++.+++||+++++++++|+
T Consensus       449 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~a~n~~~~~~~~~a~  528 (661)
T 2ddh_A          449 GGMVSYLNDLPSQRIQPQQVAVWPTMVDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASE  528 (661)
T ss_dssp             CGGGGGGGGCCC--------------CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHH
T ss_pred             chHHHHHHhhhhhhccccccccccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            67899998653 2211111  1134688999999999999999999998888874    456788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhHHHHHhhhhhHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 008966          471 AHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV  546 (547)
Q Consensus       471 a~~~~~~~~~f~~~v~~~~~~~~~k~vL~~L~~LyaL~~i~~~~~~fl~~~~ls~~~~~~l~~~i~~l~~~Lrp~~  546 (547)
                      ||+++++++.|++.|++ ++++++++||++||.||+|+.|+++++||+++||||++|++.|++.|.+||.+||||+
T Consensus       529 a~~~~~~~~~f~~~~~~-~~~~~~~~~L~~l~~L~~l~~i~~~~~~~l~~~~~s~~~~~~~~~~~~~l~~~lrp~a  603 (661)
T 2ddh_A          529 AHCHYVVVKVFSDKLPK-IQDKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIRPNA  603 (661)
T ss_dssp             HHHHHHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHGGGH
T ss_pred             HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987 7888999999999999999999999999999999999999999999999999999985
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 547
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 3e-70
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 4e-53
d1w07a2198 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, do 6e-45
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 1e-44
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 3e-40
d2ddha2181 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase- 5e-30
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 5e-21
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 5e-15
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 9e-15
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 3e-13
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 4e-13
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 7e-13
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 8e-13
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 7e-09
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 7e-08
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 2e-07
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  224 bits (572), Expect = 3e-70
 Identities = 174/217 (80%), Positives = 200/217 (92%)

Query: 2   LSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGT 61
           LSRKELFK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT
Sbjct: 55  LSRKELFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGT 114

Query: 62  DEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWW 121
           +EQ +KWL LA KM+IIGCYAQTELGHGSNVQGLETTAT DP+TDEFVIH+PT T+SKWW
Sbjct: 115 EEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWW 174

Query: 122 PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN 181
           PGGLGKVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN
Sbjct: 175 PGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYN 234

Query: 182 TMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV 218
           +MDNG L F+HVRIPR+QMLMR+S+VTREG+YV S+V
Sbjct: 235 SMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDV 271
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 198 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 181 Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 100.0
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 100.0
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 100.0
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 100.0
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 99.97
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 99.96
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 99.96
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.96
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.96
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 99.96
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 99.96
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.95
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.95
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.94
d1w07a2198 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.94
d2ddha2181 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.92
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.92
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.92
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.91
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.91
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.91
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.91
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.91
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.91
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.9
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.9
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.78
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 80.92
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-46  Score=367.71  Aligned_cols=217  Identities=80%  Similarity=1.284  Sum_probs=207.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhhhhcCCcchhHhhhhhhHHHHhcCCCHHHHHhHhHHHhccceeeE
Q 008966            1 MLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGC   80 (547)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~~q~~~~l~~i~~g~~~g~   80 (547)
                      +|+|+|+|+...++....|+.+.++||..++.+....+++.+.++++|++||+++|..+||++||++|||++.+|++++|
T Consensus        54 ~~sr~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~  133 (271)
T d1w07a3          54 RLSRKELFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGC  133 (271)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCCCCHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHhccchHHHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEE
Confidence            48999999999999999999999999999988888888899999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeEcccCCCCCCcEEEEEEEEccCCCCcceEEEEEeecCCCCC
Q 008966           81 YAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDH  160 (547)
Q Consensus        81 ~a~TE~~~Gsd~~~l~TtA~~d~~~~~filntp~~~G~K~~i~~l~~~A~~~~V~A~~~~~~~~~g~~~flV~~r~~~~~  160 (547)
                      ||+|||+||||+.+++|+|++|+++++|+||+|+.+|+|+||+|++..|++++|+|++.++++++|+++|+||+|+.+++
T Consensus       134 ~a~TEp~~GSd~~~l~T~A~~d~~gd~~vlng~k~~~~K~wi~~~g~~a~~~vv~a~~~~~~~~~g~~~flV~~~~~~~~  213 (271)
T d1w07a3         134 YAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDH  213 (271)
T ss_dssp             EECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTC
T ss_pred             ecccCCccccCcccccceeeecCCCceeeecccccceeeeccCCchhhhhhhheeeeecCCCCCCCEEEEEEeccccCCC
Confidence            99999999999999999999999999999999999999999999888999999999999988889999999999999999


Q ss_pred             CCCCCeEEccCCCCccccccCCccceeEEecceecCccccccccccccCCcceeccC
Q 008966          161 SPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSN  217 (547)
Q Consensus       161 ~~~pGv~i~~~~~~~G~~~~~~~~~~~v~f~~v~VP~~~lL~~~~~v~~~G~~~~~~  217 (547)
                      .+.|||+++++++|+|..++++++++.|.||||+||++||||++++|+++|.|++++
T Consensus       214 ~~~pGv~v~~~~~k~G~~~~~~~~~~~i~Fd~VrVP~~~lLg~~g~v~~~G~~~~s~  270 (271)
T d1w07a3         214 SPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSD  270 (271)
T ss_dssp             CBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCCSSEEECTTCCEEECS
T ss_pred             CCCCceEEcccccccCccccCCCceEEEEEeeEEECHHHcCCCCCcCCCCceEecCC
Confidence            999999999999999865679999999999999999999999999999999997743
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure