Citrus Sinensis ID: 008986

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------

MPMAAGLASEADRAAAAVGPVQSPPVVMMSDAFAKDAIIAWFRGEFAAANAIIDALCGHLAEVRGGGGIGSGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTEKMVEEKKDDGEKKVDELKECLDSEKSTENGEKMTESEKKCEVEEETAVEEDDSPNSDITDSGSQEMQPITENVEICSNHEECDARRSQIKLTKGFAAKEQVKGHMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPNKRISITFFRVRPESNQSQSPPTTPTGTMNGAMALWQPGVPSPYSVPNGAPSGYEAMDMTPKWGVLRAPVVMLAPVRPMALSPGRMPHGGTGVFLPWAVGSRKPAKHLPPRAQKGRFLALPSSVVAESAPESAVSVEAKEV

ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccEEEEEEccccccccccEEEEcccccHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccccccEEEEEccccHHHccccccccccccccccEEEEEcccEEEEEcccccccccEEcccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccEEccccc

ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccEEccccEEEEEEEcccEEEEEcccEEccccccHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccccccEEEEEEEcccEEEcEEEEEcccccccccEEEEccccEEEEEEcccHHHHHHccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccEcccccccccccccccccccccccc

mpmaaglaSEADRAaaavgpvqsppvvmmSDAFAKDAIIAWFRGEFAAANAIIDALCGHLaevrggggigsgYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTEKMVEEKKDDGEKKVDELKECldsekstengekmtesekkceveeetaveeddspnsditdsgsqemqpitENVEICSNHEECDARRSQIKLTKGFAAKEQVKGHMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLagqsgelsgETFILFNKQMKGNRRELIRFGIPIFRHIkeeatsnneignlepiPALLQSVIDHLVQWqlipeykkpngciinffdeaeysqpflkpphldqpistlllsdSAMAFGRSlvcdndgnykGQLMLSLKEGSLVVmrgnsadtarhvmcpspnkrisitffrvrpesnqsqsppttptgtmngamalwqpgvpspysvpngapsgyeamdmtpkwgvlrapvvmlapvrpmalspgrmphggtgvflpwavgsrkpakhlppraqkgrflalpssvvaesapesavsVEAKEV

MPMAAGLASEADRAAAAVGPVQSPPVVMMSDAFAKDAIIAWFRGEFAAANAIIDALCGHLAEVRGGGGIGSGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTEKMveekkddgekkvdelkecldsekstengekmtesekkceveeetaveeddspnsditdsgsqemQPITENVEICSNHEECDARRSQIKLTKgfaakeqvkghmvnVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSAdtarhvmcpspnKRISITFFrvrpesnqsqsppttpTGTMNGAMALWQPGVPSPYSVPNGAPSGYEAMDMTPKWGVLRAPVVMLAPVRPMALSPGRMPHGGTGVFLPWAVGSRKPAKHLPPRAQKGRFLALPSSVvaesapesavsveakev

MPMAAGLASEADRAAAAVGPVQSPPVVMMSDAFAKDAIIAWFRGEFAAANAIIDALCGHLAEVRGGGGIGSGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTekmveekkddgekkvdelkeCLDSEKSTENGEKMtesekkceveeetaveeddsPNSDITDSGSQEMQPITENVEICSNHEECDARRSQIKLTKGFAAKEQVKGHMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPNKRISITFFRVRPESNQSQSppttptGTMNGAMALWQPGVPSPYSVPNGAPSGYEAMDMTPKWGVLRAPVVMLAPVRPMALSPGRMPHGGTGVFLPWAVGSRKPAKHLPPRAQKGRFLALPssvvaesapesavsveakev

*************************VVMMSDAFAKDAIIAWFRGEFAAANAIIDALCGHLAEVRGGGGIGSGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNV*****************************************************************************************QIKLTKGFAAKEQVKGHMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCP***KRISITFFR**********************************************MDMTPKWGVLRAPVVMLAPVRPMALSPGRMPHGGTGVFLPWAVG*****************************************

**************************VMMSDAFAKDAIIAWFRGEFAAANAIIDALCGHLAEVRG**GIGSGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNV***********************************************************************************************GFAAKEQVKGHMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHI*************EPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPNKRISITFF****************************************************KWGVLRAPVVMLA******************VF***********************************************

*****************VGPVQSPPVVMMSDAFAKDAIIAWFRGEFAAANAIIDALCGHLAEVRGGGGIGSGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTEK***********KVDELKECL********************************************MQPITENVEICSNHEECDARRSQIKLTKGFAAKEQVKGHMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPNKRISITFFRVR************PTGTMNGAMALWQPGVPSPYSVPNGAPSGYEAMDMTPKWGVLRAPVVMLAPVRPMALSPGRMPHGGTGVFLPWAVGSRKPAKHLPPRAQKGRFLALPS*******************

******************GPVQSPPVVMMSDAFAKDAIIAWFRGEFAAANAIIDALCGHLAEVRGGGGIGSGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTEKMVE**********************************************************************************SQIKLTKGFAAKEQVKGHMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPNKRISITFFRVRPE*******PTTPTGTMNGAMALWQPGVPSPYSVPNGAPSGYEAMDMTPKWGVLRAPVVMLAPVRPMALSPGRMPHGGTGVFLPWAVGSRKPAKHLPPRAQKGRFLAL*********************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MPMAAGLASEADRAAAAVGPVQSPPVVMMSDAFAKDAIIAWFRGEFAAANAIIDALCGHLAEVRGGGGIGSGYEKVFAAIHRRRMNWISVLQMQKYHSxxxxxxxxxxxxxxxxxxxxxDGEKKVDELKECLDSEKSTENGEKMTESEKKCEVEEETAVEEDDSPNSDITDSGSQEMQPITENVEICSNHEECDARRSQIKLTKGFAAKEQVKGHMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPNKRISITFFRVRPESNQSQSPPTTPTGTMNGAMALWQPGVPSPYSVPNGAPSGYEAMDMTPKWGVLRAPVVMLAPVRPMALSPGRMPHGGTGVFLPWAVGSRKPAKHLPPRAQKGRFLALPSSVVAESAPESAVSVEAKEV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		547	2.2.26 [Sep-21-2011]
Q08BA6		352	RNA demethylase ALKBH5 OS	yes	no	0.234	0.363	0.276	0.0006

>sp\|Q08BA6\|ALKB5_DANRE RNA demethylase ALKBH5 OS=Danio rerio GN=alkbh5 PE=2 SV=1	Back alignment and function desciption

 Score = 46.6 bits (109), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 24/152 (15%)

Query: 295 GNLEPIPALLQS-VIDHLVQWQLIPE---------YKKPNGCIINFFDEAEYSQPFLKPP 344
           G ++ IP  +   VID LV   +IPE           +P GCI++  D          P 
Sbjct: 127 GEVDDIPDWVHELVIDRLVTHGVIPEGFVNSAVINDYQPGGCIVSHVD----------PI 176

Query: 345 HL-DQPI-STLLLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVM 402
           H+ ++PI S    SDSA+ FG   +       +  L L ++ GS+ V+ G +AD   H +
Sbjct: 177 HIFERPIVSVSFFSDSALCFGCKFLFKPIRVSEPVLHLPVRRGSVTVLSGYAADDITHCI 236

Query: 403 CPS--PNKRISITFFRVRPESNQSQSPPTTPT 432
            P     +R  I   + R ++ +  S   +P+
Sbjct: 237 RPQDIKERRAVIILRKTRADAPRLDSNSLSPS 268

Dioxygenase that demethylates RNA by oxidative demethylation: specifically demethylates N(6)-methyladenosine (m(6)A) RNA, the most prevalent internal modification of messenger RNA (mRNA) in higher eukaryotes. Requires molecular oxygen, alpha-ketoglutarate and iron.
Danio rerio (taxid: 7955)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		547
255567650		550	conserved hypothetical protein [Ricinus	0.968	0.963	0.709	0.0
356502827		514	PREDICTED: uncharacterized protein LOC10	0.915	0.974	0.643	0.0
225436894		557	PREDICTED: uncharacterized protein LOC10	0.972	0.955	0.619	0.0
224131324		551	predicted protein [Populus trichocarpa]	0.937	0.931	0.633	0.0
357442687		513	hypothetical protein MTR_1g089860 [Medic	0.875	0.933	0.634	0.0
356503517		527	PREDICTED: uncharacterized protein LOC10	0.906	0.941	0.633	0.0
356570554		525	PREDICTED: uncharacterized protein LOC10	0.941	0.980	0.630	0.0
449491613		548	PREDICTED: uncharacterized LOC101203670	0.967	0.965	0.610	0.0
449462334		548	PREDICTED: uncharacterized protein LOC10	0.967	0.965	0.610	0.0
356536752		466	PREDICTED: uncharacterized protein LOC10	0.835	0.980	0.611	1e-178

>gi\|255567650\|ref\|XP_002524804.1\| conserved hypothetical protein [Ricinus communis] gi\|223535988\|gb\|EEF37647.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/555 (70%), Positives = 449/555 (80%), Gaps = 25/555 (4%)

Query: 1   MPMAAGLASEADRAAAA---VGPVQSPPVVMMSDAFAKDAIIAWFRGEFAAANAIIDALC 57
           MPMAAG A+  DRAA A   V P+Q+PP+ M+SDAFAKDAI+AWFRGEFAAANAIIDALC
Sbjct: 1   MPMAAGPATPTDRAAPAGPTVVPIQAPPM-MISDAFAKDAILAWFRGEFAAANAIIDALC 59

Query: 58  GHLAEVRGGGGIG-SGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTEKMVEE 116
            HLA++ GGG  G S YE VFAAIHRRR+NWI VLQMQKYHSIA+V +ELR V E   + 
Sbjct: 60  SHLAQLNGGGAGGGSEYEAVFAAIHRRRLNWIPVLQMQKYHSIADVAVELRKVAEN--KR 117

Query: 117 KKDDGEK-KVDE-------LKE-CLDSEKSTENGEKMTESEKKCEVEEETAVEEDDSPNS 167
             +D E  K+D        LKE CLD EK  + G+++T+      VE +   EE+DSP S
Sbjct: 118 STNDCEMMKIDTSSTDKVVLKEVCLDDEKKEKVGDRITDCLGNGTVEHDGGDEEEDSPVS 177

Query: 168 DITDSGSQEMQPITENVEICSNHEECDARRSQIKLTKGFAAKEQVKGHMVNVVKGLKLYE 227
           DITDSGSQE+Q   E+ +ICSNHE+C+ R  QIKLTKGF AKEQV     NVVKGLKLYE
Sbjct: 178 DITDSGSQEVQSPGESTDICSNHEDCNLRPDQIKLTKGFNAKEQV-----NVVKGLKLYE 232

Query: 228 DVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEE 287
           DVFTDSELS LTD+VNELR+AGQ+GEL GETFILFNKQMKGN+RELI+ GIPIF HIKEE
Sbjct: 233 DVFTDSELSKLTDFVNELRVAGQNGELEGETFILFNKQMKGNKRELIQLGIPIFGHIKEE 292

Query: 288 ATSNNEIGNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLD 347
           A+S  +  ++EPIPALLQ VIDHL+QWQLIPEYKKPNGCII+FFDE EYSQPF KPPHL+
Sbjct: 293 ASSKKQTSSIEPIPALLQHVIDHLIQWQLIPEYKKPNGCIIHFFDEEEYSQPFQKPPHLE 352

Query: 348 QPISTLLLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPN 407
           QPISTLLLS+S MAFGR+LV DNDGNY+G LMLSLKEGSL+VMRGNS+D ARHVMCPSPN
Sbjct: 353 QPISTLLLSESTMAFGRTLVSDNDGNYRGPLMLSLKEGSLLVMRGNSSDMARHVMCPSPN 412

Query: 408 KRISITFFRVRPESNQSQSPPTTPTGTMNGAMALWQPGVPSPYSVPNGAPSGYEAMDMTP 467
           KR+SITFF+VRP++ Q QSPPT+P   M GAM LWQPGVPSPY++PNGA  GYEA+D   
Sbjct: 413 KRVSITFFKVRPDAYQGQSPPTSP---MAGAMTLWQPGVPSPYAMPNGAIGGYEAVDTMT 469

Query: 468 KWGVLRAPVVMLAPVRPMALSPGRMPHGGTGVFLPWAVGSRKPAKHLPPRAQKGRFLALP 527
           KWGVLR PVVMLAP+RPM LSP RMP GGTGVFLPW VGSRKPAKHLPPRAQKGR LALP
Sbjct: 470 KWGVLRTPVVMLAPMRPMVLSPKRMPRGGTGVFLPWTVGSRKPAKHLPPRAQKGRLLALP 529

Query: 528 SSVVAESAPESAVSV 542
            S+   +A  S +SV
Sbjct: 530 -SIENHAADSSEISV 543

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356502827\|ref\|XP_003520217.1\| PREDICTED: uncharacterized protein LOC100791586 [Glycine max]	Back alignment and taxonomy information

>gi\|225436894\|ref\|XP_002271361.1\| PREDICTED: uncharacterized protein LOC100256341 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224131324\|ref\|XP_002321056.1\| predicted protein [Populus trichocarpa] gi\|222861829\|gb\|EEE99371.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357442687\|ref\|XP_003591621.1\| hypothetical protein MTR_1g089860 [Medicago truncatula] gi\|355480669\|gb\|AES61872.1\| hypothetical protein MTR_1g089860 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356503517\|ref\|XP_003520554.1\| PREDICTED: uncharacterized protein LOC100796344 [Glycine max]	Back alignment and taxonomy information

>gi\|356570554\|ref\|XP_003553450.1\| PREDICTED: uncharacterized protein LOC100776159 [Glycine max]	Back alignment and taxonomy information

>gi\|449491613\|ref\|XP_004158952.1\| PREDICTED: uncharacterized LOC101203670 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449462334\|ref\|XP_004148896.1\| PREDICTED: uncharacterized protein LOC101203670 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356536752\|ref\|XP_003536899.1\| PREDICTED: uncharacterized protein LOC100802371 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		547
TAIR\|locus:2139345		569	AT4G02940 [Arabidopsis thalian	0.917	0.882	0.562	5.3e-143
TAIR\|locus:2066385		438	AT2G48080 [Arabidopsis thalian	0.535	0.668	0.555	1.2e-117
TAIR\|locus:2006717		601	AT1G14710 "AT1G14710" [Arabido	0.442	0.402	0.373	3.8e-64
TAIR\|locus:2060964		507	AT2G17970 [Arabidopsis thalian	0.427	0.461	0.337	1.9e-30
TAIR\|locus:2135124		520	AT4G36090 [Arabidopsis thalian	0.460	0.484	0.323	8.8e-30
TAIR\|locus:2028486		331	AT1G48980 [Arabidopsis thalian	0.444	0.734	0.329	3.2e-27

TAIR\|locus:2139345 AT4G02940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
 Identities = 301/535 (56%), Positives = 364/535 (68%)

Query:    15 AAAVG-PVQSPPVVMMSDAFAKDAIIAWFRGEFAAANAIIDALCGHLAEVRGGGGIGSGY 73
             A AV  PVQ PP  ++S+   KDA+I+WFRGEFAAANAIIDA+C HL  +      GS Y
Sbjct:    26 AKAVSVPVQVPPATVVSEGLGKDALISWFRGEFAAANAIIDAMCSHL-RIAEEAVSGSEY 84

Query:    74 EKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTXXXXXXXXXXXXXXXXXXXX--- 130
             E VFAAIHRRR+NWI VLQMQKYHSIAEV +EL+ V                        
Sbjct:    85 EAVFAAIHRRRLNWIPVLQMQKYHSIAEVAIELQKVAAKKAEDLKQKKTEEEAEEDLKEV 144

Query:   131 -CLDSE---KSTENGEKMXXXXXXXXXXXXXXXXXXXXPNSDITDSGS-QEM-QPI---T 181
                + E   K   NGEK+                    P SDITDSGS Q++ Q +   T
Sbjct:   145 VATEEEEVKKECFNGEKVTENDVNGDVEDVEDDS----PTSDITDSGSHQDVHQTVVADT 200

Query:   182 ENVEICSNHEECDARRSQIKLTKGFAAKEQVKGHMVNVVKGLKLYEDVFTDSELSMLTDY 241
              +  IC +HE+CDAR  +IK  KGF AKEQVKGH VNVVKGLKLYE++  + E+S L D+
Sbjct:   201 AHQIICHSHEDCDARSCEIKPIKGFQAKEQVKGHTVNVVKGLKLYEELLKEDEISKLLDF 260

Query:   242 VNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSN--NEIGNLEP 299
             V ELR AG +G+L+GE+FILFNKQ+KGN+RELI+ G+PIF H+K +  SN  N   N+EP
Sbjct:   261 VAELREAGINGKLAGESFILFNKQIKGNKRELIQLGVPIFGHVKADENSNDTNNSVNIEP 320

Query:   300 IPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTLLLSDSA 359
             IP LL+SVIDH V W+LIPEYK+PNGC+INFF+E EYSQPFLKPPHL+QPISTL+LS+S 
Sbjct:   321 IPPLLESVIDHFVTWRLIPEYKRPNGCVINFFEEGEYSQPFLKPPHLEQPISTLVLSEST 380

Query:   360 MAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPSPNKRISITFFRVRP 419
             MA+GR L  DN+GN++G L LSLK+GSL+VMRGNSAD ARHVMCPS NKR+SITFFR+RP
Sbjct:   381 MAYGRILSSDNEGNFRGPLTLSLKQGSLLVMRGNSADMARHVMCPSQNKRVSITFFRIRP 440

Query:   420 ESNQSQSXXXXXXGTMNGAMALWQPGVPSPYSVPNGAPSGYE-AMDMTPKWGVLRAPVVM 478
             ++  + S         +G M +WQP   +P    NG    Y+ ++DM PK GVLR P+VM
Sbjct:   441 DTYHNHSQPNSPRN--DGVMTMWQPYQMTPTPFLNG----YDHSIDMMPKLGVLRPPMVM 494

Query:   479 LAP--VRPMAL-SPGRM-PHGGTGVFLPWAV--GSRKPAKHLPPRAQKGRFLALP 527
             +AP  V+PM L SP  M   GGTGVFLPWA    SRK  KHLPPRAQK R L LP
Sbjct:   495 MAPPPVQPMILPSPNVMGTGGGTGVFLPWASVNSSRKHVKHLPPRAQKKRLLPLP 549

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR\|locus:2066385 AT2G48080 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2006717 AT1G14710 "AT1G14710" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060964 AT2G17970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2135124 AT4G36090 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2028486 AT1G48980 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.14.11.4	LOW CONFIDENCE prediction!
4th Layer	1.14.11.7	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		547
pfam03171		96	pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe	5e-08
pfam13532		190	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su	0.002

>gnl\|CDD\|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 323 PNGCIINFFDEAEYSQPFLKPPHLDQPISTLLLSDSAMAFGRSLVCDNDGNY---KGQLM 379
           P G ++N++            PH D  I T+LL D            + G      G   
Sbjct: 2   PEGLLVNYY---PPDLGLGLGPHTDDSIITILLQDGGGGL---QFLKDGGWIDVPPGPGA 55

Query: 380 LSLKEGS-LVVMRGNSADTARH-VMCPSPNKRISITFFR 416
           L +  G  L+V+      +  H V+  +  +RISI FF 
Sbjct: 56  LVVNFGDLLLVLSNGRYKSVLHRVLPNTGGERISIAFFL 94

This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily. This family includes the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity EC:1.14.11.2 catalyzing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 <=> procollagen trans- 4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. Length = 96

>gnl\|CDD\|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		547
KOG4176		323	consensus Uncharacterized conserved protein [Funct	100.0
PF13532		194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.98
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	99.93
KOG3200		224	consensus Uncharacterized conserved protein [Funct	99.86
TIGR00568		169	alkb DNA alkylation damage repair protein AlkB. Pr	99.86
KOG3959		306	consensus 2-Oxoglutarate- and iron-dependent dioxy	99.85
COG3145		194	AlkB Alkylated DNA repair protein [DNA replication	99.8
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	97.92
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	97.65
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	97.33
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	96.2
PLN00052		310	prolyl 4-hydroxylase; Provisional	95.89
TIGR01762		288	chlorin-enz chlorinating enzymes. This model repre	95.15
COG3128		229	PiuC Uncharacterized iron-regulated protein [Funct	94.59
TIGR02408		277	ectoine_ThpD ectoine hydroxylase. Both ectoine and	91.2
PF05721		211	PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro:	90.04
KOG2731		378	consensus DNA alkylation damage repair protein [RN	89.39
PF12933		253	FTO_NTD: FTO catalytic domain; InterPro: IPR024367	86.8
KOG1591		289	consensus Prolyl 4-hydroxylase alpha subunit [Amin	85.92
PF09859		173	Oxygenase-NA: Oxygenase, catalysing oxidative meth	80.19

>KOG4176 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=1.5e-53  Score=435.69  Aligned_cols=307  Identities=40%  Similarity=0.659  Sum_probs=268.4

Q ss_pred             CchhHHHHHHHhhcccchhhhhhhhcccHHHHHHHHHHhHHHhhhcccccCCccchhhhhhccCCCcccCCCccchhhhc
Q 008986           71 SGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTEKMVEEKKDDGEKKVDELKECLDSEKSTENGEKMTESEKK  150 (547)
Q Consensus        71 ~eyd~V~~ai~qRR~nW~~VlhMQqy~sv~dV~~~Lqqv~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  150 (547)
                      -||+.|...|||||+||.+++.||.+.+.+.|+.++|.++-+.++..-.                               
T Consensus         7 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-------------------------------   55 (323)
T KOG4176|consen    7 YEYAKVAKKIHRRRLNSSDVLVQSSRESTSYLAVANQGLAAGLAEAALL-------------------------------   55 (323)
T ss_pred             ccHHHHHHHHHhhhcccCCcceecccCCcHHHHhhccchhhhhhhhhhh-------------------------------
Confidence            7899999999999999999999999999999999999999887543311                               


Q ss_pred             hhhcccccccccCCCCCCCCCCCCccccccccccccccchhhhccc-ccccccccceeeEeeecCeecccCCCeeEeccc
Q 008986          151 CEVEEETAVEEDDSPNSDITDSGSQEMQPITENVEICSNHEECDAR-RSQIKLTKGFAAKEQVKGHMVNVVKGLKLYEDV  229 (547)
Q Consensus       151 ~~~~~~~~~~~~~~~~s~~~~~g~~~~~~~~~~~~~~s~~e~~~~~-~~~v~~~k~f~~~E~v~G~~vNvv~GLkL~edf  229 (547)
                             .+.+++..++.++.+++.+..    ...+|+..+++..+ ....+..|+|.+.|..+++.+|.++|++++.+.
T Consensus        56 -------~~~~~~~~~~~~~~~~s~~~~----~~~~~~e~~~~~~~~~~~~~~i~~f~~~e~~~~~~~n~~~~~~l~~~~  124 (323)
T KOG4176|consen   56 -------VDAEDGEVDSGIMSPGSEDSL----FRELYSEESRLRYRTDANLKAIKGFGEQEQLKGQSVNVVEGLKLRDEV  124 (323)
T ss_pred             -------ccccccccccccccCCcccch----hhhhchhhhhhhhhhhccccccccccceeeccchhhhhhhhheeeccc
Confidence                   011123334445555544211    11234444556666 357899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHcccccccccceeeeccccccCCCceeEEeecccccccccccccCCCCCCCCCChHHHHHHHH
Q 008986          230 FTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEPIPALLQSVID  309 (547)
Q Consensus       230 ~s~~Ee~kLl~~Idel~~~Grrg~l~G~Tv~~~rk~mKG~kRrviqfGy~y~y~~~~~~~~sg~~~~vePIP~~L~~Lid  309 (547)
                      |++.|...|.+++.+++++|..+.+.+++++.   |++|++|+++||||+|+|.++..++..    .++|||..++.||+
T Consensus       125 ~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~---~~~gk~R~~iq~G~~f~y~~~~~d~~~----~~~piPs~~~~ii~  197 (323)
T KOG4176|consen  125 FIPGELSLIVDFVTELEEKGLIGALVDETFTY---QESGKHREVIQLGYPFDYRTNNVDESK----PVDPIPSLFKSIID  197 (323)
T ss_pred             cChhhceehhhhhhhhHHhhhhccccccccee---eccccceeeeecCceeccCCCcccccC----ccCCCchHHHHHHH
Confidence            99999999999999999999999999988876   888999999999999999997766432    39999999999999


Q ss_pred             HHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCCCCCCceEEE-EccccccccccccccCCCCCcceeEEEEecCCeEE
Q 008986          310 HLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPPHLDQPISTL-LLSDSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLV  388 (547)
Q Consensus       310 RLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpPHfD~PIvtL-LLSec~M~FGr~~~~~~~Ge~~g~l~L~Lp~GSLL  388 (547)
                      ||++|.+||+  +|||||||+|+||+||+||++.++|++||+++ |||+|+|.|||.+..+..++++|.++++|..||+|
T Consensus       198 rlv~~~~ip~--~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~l  275 (323)
T KOG4176|consen  198 RLVSWRVIPE--RPDQCTINFYEPGDGIPPHIDHSAFLDPISSLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVL  275 (323)
T ss_pred             HhhhhccCCC--CCCeeEEEeeCCCCCCCCCCChHHhcCceEEEEeecceeEEecccccccCccccccccccccccCeEE
Confidence            9999999997  89999999999999999999888999999999 99999999999999999999999999999999999


Q ss_pred             EEecCcccccceecCCCCCceEEEEEEeecCCCCCCCCCC
Q 008986          389 VMRGNSADTARHVMCPSPNKRISITFFRVRPESNQSQSPP  428 (547)
Q Consensus       389 VMsG~SRd~WkHaIPpvr~rRISITFRkvrp~~~~~~~p~  428 (547)
                      ||.|+++|+.+||+++.+++||||||||++++.+.+..|.
T Consensus       276 vi~~~~ad~~~~~~~~~~~kRisitfrki~~~~~~~~~~~  315 (323)
T KOG4176|consen  276 VIRGRSADVAPHCIRPSRNKRISITFRKIRPDPCFCEPPP  315 (323)
T ss_pred             EeCCCcccccccccCCCCCceEEEEEEEeccCCCCCCCCC
Confidence            9999999999999999999999999999999999877554

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A	Back alignment and domain information

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>KOG3200 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR00568 alkb DNA alkylation damage repair protein AlkB	Back alignment and domain information

>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]	Back alignment and domain information

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>PLN00052 prolyl 4-hydroxylase; Provisional	Back alignment and domain information

>TIGR01762 chlorin-enz chlorinating enzymes	Back alignment and domain information

>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]	Back alignment and domain information

>TIGR02408 ectoine_ThpD ectoine hydroxylase	Back alignment and domain information

>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases	Back alignment and domain information

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]	Back alignment and domain information

>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family	Back alignment and domain information

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]	Back alignment and domain information

>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		547
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	2e-07
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	5e-07
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	4e-05
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 60.6 bits (146), Expect = 9e-10
 Identities = 64/444 (14%), Positives = 136/444 (30%), Gaps = 139/444 (31%)

Query: 71  SGYEKVFAAIHRRRMNWISVLQMQKYHSIAEVTLELRNVTEKMVEEKK---DDG------ 121
              +K    + R    ++          I     +   +T   +E++    +D       
Sbjct: 77  EMVQKFVEEVLRINYKFL-------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 122 ----EKKVDELKECLDSEKSTEN----GEKMTESEKKC---EVEEETAVE---------- 160
                +   +L++ L   +  +N    G  +  S K     +V     V+          
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 161 ---EDDSPNSDITDSGSQEMQPITENVEICSNHEECDARRSQIKLTKGFAAKEQVKGHMV 217
                +SP + +     + +Q +   ++  +     D   S IKL    + + +++  + 
Sbjct: 188 NLKNCNSPETVL-----EMLQKLLYQID-PNWTSRSD-HSSNIKLRIH-SIQAELRRLLK 239

Query: 218 NVVKGLKLYE-------DVFTDSEL----------------SMLTDYVN-----ELRLAG 249
           +     K YE       +V  +++                   +TD+++      + L  
Sbjct: 240 S-----KPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 250 QSGELS-GETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEIGNLEP-----IPAL 303
            S  L+  E   L  K +    ++L     P       E  + N      P     I   
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDL-----P------REVLTTN------PRRLSIIAES 336

Query: 304 LQSVIDHLVQWQLIPEYKKPNGCI---INFFDEAEYSQPFLK----PPHLDQPISTL--- 353
           ++  +     W+ +    K    I   +N  + AEY + F +    PP    P   L   
Sbjct: 337 IRDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 354 ---LLSDSAMAF-----GRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNSADTARHVMCPS 405
              ++    M         SLV   +   K +  +S+    L +      + A H     
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLV---EKQPK-ESTISIPSIYLELKVKLENEYALH----- 446

Query: 406 PNKRISITFFRV-RPESNQSQSPP 428
             + I +  + + +   +    PP
Sbjct: 447 --RSI-VDHYNIPKTFDSDDLIPP 467

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211	Back alignment and structure

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		547
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	100.0
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	99.98
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	99.96
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.96
2jig_A		224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	97.55
3lfm_A		495	Protein FTO; FAT MASS and obesity associated (FTO)	97.41
3itq_A		216	Prolyl 4-hydroxylase, alpha subunit domain protei;	97.29
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	96.82
2hbt_A		247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	96.53
2a1x_A		308	Phytanoyl-COA dioxygenase; beta jelly roll, double	95.77
2fct_A		313	Syringomycin biosynthesis enzyme 2; mononuclear ir	93.64
2opw_A		291	Phyhd1 protein; double-stranded beta helix, oxygen	91.93
3gja_A		319	CYTC3; halogenase, beta barrel, biosynthetic prote	88.18
3emr_A		310	ECTD; double stranded beta helix, oxidoreductase;	85.96
2rg4_A		216	Uncharacterized protein; rhodobacterales, oceanico	84.69
3kt7_A		633	PKHD-type hydroxylase TPA1; double-stranded beta h	80.8

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*	Back alignment and structure

Probab=100.00  E-value=2.9e-33  Score=287.52  Aligned_cols=189  Identities=21%  Similarity=0.287  Sum_probs=137.6

Q ss_pred             eecccCCCeeEecccCCHHHHHHHHHHHHHHHHcccccccccceeeeccccccCCCceeEEeecccccccccccccCCCC
Q 008986          215 HMVNVVKGLKLYEDVFTDSELSMLTDYVNELRLAGQSGELSGETFILFNKQMKGNRRELIRFGIPIFRHIKEEATSNNEI  294 (547)
Q Consensus       215 ~~vNvv~GLkL~edf~s~~Ee~kLl~~Idel~~~Grrg~l~G~Tv~~~rk~mKG~kRrviqfGy~y~y~~~~~~~~sg~~  294 (547)
                      +..++++||.|++||||.+|+++|++.|+|.+   ....++|++      .++  +|++++|||.|+|.......   ..
T Consensus       105 ~~~~lp~Gl~~~p~fis~~Ee~~Ll~~i~w~~---~~~~~~~~~------~l~--~Rr~~~yG~~Y~Ys~~~~~~---~~  170 (345)
T 3tht_A          105 RPQALPPGLMVVEEIISSEEEKMLLESVDWTE---DTDNQNSQK------SLK--HRRVKHFGYEFHYENNNVDK---DK  170 (345)
T ss_dssp             ECCSCCTTEEEETTCSCHHHHHHHHTTCC---------------------------CEEECCC-----------------
T ss_pred             ccccCCCceEEEcCcCCHHHHHHHHHhcccCC---ccccccCcc------ccc--CceEEEECCccccccccccc---CC
Confidence            34678999999999999999999988877543   334445433      233  58999999999998764321   11


Q ss_pred             CCCCCChHHHHHHHHHHHHccCCCCCCCCCeEEeeecCCCCCCCCCCCCC-CCCCceEEE-EccccccccccccccCCCC
Q 008986          295 GNLEPIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFLKPP-HLDQPISTL-LLSDSAMAFGRSLVCDNDG  372 (547)
Q Consensus       295 ~~vePIP~~L~~LidRLv~~~vIp~~~~PDqcIINeY~pGqgI~PH~dpP-HfD~PIvtL-LLSec~M~FGr~~~~~~~G  372 (547)
                      ..+.|||++|..|++|+.+.++..  ..||+|+||+|.+|++|+||.|.. .|+.+|++| |+++|+|.|++..     +
T Consensus       171 p~p~~~P~~L~~l~~r~~~~~~~~--~~~n~~lvN~Y~~G~~I~~H~D~~~~~~~~I~slSLG~~~~f~f~~~~-----~  243 (345)
T 3tht_A          171 PLSGGLPDICESFLEKWLRKGYIK--HKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPD-----G  243 (345)
T ss_dssp             ----CCCHHHHHHHHHHHHHTSCS--SCCSEEEEEEECTTCCEEEECCCTTTBCSCEEEEEESSCEEEEEECTT-----S
T ss_pred             CCCcCcCHHHHHHHHHHHhcccCC--CCCCEEEEEEecCCCCEeeccCCchhcCCeEEEEECCCceeEEEccCC-----C
Confidence            246789999999999999877775  499999999999999999999876 599999999 7899999999841     1


Q ss_pred             CcceeEEEEecCCeEEEEecCcccccceecCCC---------------------------CCceEEEEEEeecCCCCCCC
Q 008986          373 NYKGQLMLSLKEGSLVVMRGNSADTARHVMCPS---------------------------PNKRISITFFRVRPESNQSQ  425 (547)
Q Consensus       373 e~~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPpv---------------------------r~rRISITFRkvrp~~~~~~  425 (547)
                         ..++|.|++||||||.|++|+.|+|+||++                           |.+|||||||+++++.|.|.
T Consensus       244 ---~~~~l~L~~gsLlvM~G~~r~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~r~~RiSlT~R~v~~~~c~C~  320 (345)
T 3tht_A          244 ---IAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCS  320 (345)
T ss_dssp             ---CEEEEEECTTEEEEECTHHHHTSEEEECCCSEEEEESGGGSSCEECCSSSSCEEEEECCCEEEEEEECBCSSCCCCS
T ss_pred             ---ceEEEEcCCCcEEEEChHHhhceEccCCcccCCccCcccccccccccccCCCceeccCCCEEEEEEEecCCCCcCCC
Confidence               268999999999999999999999999883                           34699999999999988765


Q ss_pred             CC
Q 008986          426 SP  427 (547)
Q Consensus       426 ~p  427 (547)
                      -|
T Consensus       321 ~~  322 (345)
T 3tht_A          321 YP  322 (345)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

PyMOL of 3tht

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A	Back alignment and structure

>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}	Back alignment and structure

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}	Back alignment and structure

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*	Back alignment and structure

>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9	Back alignment and structure

>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*	Back alignment and structure

>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*	Back alignment and structure

>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A*	Back alignment and structure

>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}	Back alignment and structure

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A	Back alignment and structure

>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		547
d2fdia1		200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	2e-06
d2iuwa1		210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	7e-05

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 15/125 (12%)

Query: 299 PIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDEAEYSQPFL--KPPHLDQPISTLLLS 356
            +P    ++          P+++ P+ C+IN +              P L  PI ++ L 
Sbjct: 77  AMPQSFHNLCQRAATAAGYPDFQ-PDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLG 135

Query: 357 DSAMAFGRSLVCDNDGNYKGQLMLSLKEGSLVVMRGNS-------ADTARHVMCPSPNKR 409
             A+                   L L+ G +VV  G S                 + + R
Sbjct: 136 LPAIFQFG-----GLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCR 190

Query: 410 ISITF 414
            ++TF
Sbjct: 191 YNLTF 195

PyMOL of d2fdia1

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		547
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	99.97
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	99.95
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	96.93
d2a1xa1		296	Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie	96.72

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-31  Score=244.90  Aligned_cols=180  Identities=14%  Similarity=0.217  Sum_probs=133.8

Q ss_pred             CCeeEecccCCHHHHHHHHHHH-HHHHHcccccccccceeeeccccccCCCceeEEee-cccccccccccccCCCCCCCC
Q 008986          221 KGLKLYEDVFTDSELSMLTDYV-NELRLAGQSGELSGETFILFNKQMKGNRRELIRFG-IPIFRHIKEEATSNNEIGNLE  298 (547)
Q Consensus       221 ~GLkL~edf~s~~Ee~kLl~~I-del~~~Grrg~l~G~Tv~~~rk~mKG~kRrviqfG-y~y~y~~~~~~~~sg~~~~ve  298 (547)
                      .||.||+|||+++|++.|++.| +++.|........|+++..+++        +..|| +.|.|......       ...
T Consensus        19 ~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~~pR~--------~~~~~d~~y~y~~~~~~-------~~~   83 (210)
T d2iuwa1          19 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRL--------TAWYGELPYTYSRITME-------PNP   83 (210)
T ss_dssp             EEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSE--------EEEEECCCTTSCHHHHC-------CBS
T ss_pred             ceEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccceeee--------eEEecCcCccccccccc-------cCC
Confidence            3599999999999999999998 5556766666666666544433        22232 33444333211       456


Q ss_pred             CChHHHHHHHHHHHHccCCCCCCCCCeEEeeecCC-CCCCCCCCCCCC-CC--CceEEE-EccccccccccccccCCCCC
Q 008986          299 PIPALLQSVIDHLVQWQLIPEYKKPNGCIINFFDE-AEYSQPFLKPPH-LD--QPISTL-LLSDSAMAFGRSLVCDNDGN  373 (547)
Q Consensus       299 PIP~~L~~LidRLv~~~vIp~~~~PDqcIINeY~p-GqgI~PH~dpPH-fD--~PIvtL-LLSec~M~FGr~~~~~~~Ge  373 (547)
                      +||++|..|.+++.+....    .+|+|+||.|.. |++|+||.|... |+  .+|++| |++.|+|.|.+.......++
T Consensus        84 ~~~~~l~~l~~~~~~~~~~----~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~~~~~  159 (210)
T d2iuwa1          84 HWHPVLRTLKNRIEENTGH----TFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGD  159 (210)
T ss_dssp             SCCHHHHHHHHHHHHHHSC----CCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC------
T ss_pred             CCcHHHHHHHHhhhhhcCc----cchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEccccccccCCc
Confidence            7999999999999987654    678888888866 689999998664 54  468889 77999999987543222222


Q ss_pred             c--ceeEEEEecCCeEEEEecCcccccceecCCC---CCceEEEEEEeecC
Q 008986          374 Y--KGQLMLSLKEGSLVVMRGNSADTARHVMCPS---PNKRISITFFRVRP  419 (547)
Q Consensus       374 ~--~g~l~L~Lp~GSLLVMsG~SRd~WkHaIPpv---r~rRISITFRkvrp  419 (547)
                      .  ...++|.|++||||||.|++|+.|+|+||+.   +++|||||||++.|
T Consensus       160 ~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~~~~~RiSlTfR~v~p  210 (210)
T d2iuwa1         160 YTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYP  210 (210)
T ss_dssp             --CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCCC
T ss_pred             cCCCceEEEEcCCCCEEEeCchhhCceEccCCccCCCCCCeEEEEEEeecC
Confidence            2  2359999999999999999999999999975   46899999999976

PyMOL of d2iuwa1

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure

>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure