Citrus Sinensis ID: 009027

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540------
Protein Sequence
MVFLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Secondary Structure (PSIPRED)
cEEEEEEEccccccccccccccccccHHHHHcccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccEEEEccHHHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHHHHcccccHHHHHHHHHccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHccccEEEccEEEEEEEEccEEEEEccccEEEEEEEEEEccccccHHHHHHHccccccEEEEEcccccccccccccccEEEcccccccccccccEEEEEcccccccccccEEEEEEEcccccccccHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccccccccEEEEccccccccccccccccHHHHcHHHHHHHHHHHHHcccccHHHHccccHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccHHcccccccccccEEccccccccHHHHHHHHHccccccccccccHHcHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccEEEEEcHHHHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccEEcccEEEEcccHHHHHHHHHHHHHHccccEEccccEEEEEEcccEEEEEEccccEEEEEEEEEcccccHHHHHHHHcccccccEEEEEEEEcccccccccccEEEEccccccccccccEEEEEEccccccccccEEEEEEEcccccccccHHHHHHHHHHHcHHHccccHHHcEEEEEEEEEccccccccccccccEEEEEccccccccccEcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mvflqlrhfngvshfpsqvhgkrkvsqrciclqpqaavpsrTRRIMESISvsgevggaggaySYDALKRLDQIWSNICSTQTVQQEIQQVVSsnaglfsqsdlsdkavgtfDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVEsgilveddideatatkfnpnrcgfegkgeIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIrsgrkpdgvclvvgscargfkdnstsdviyssssvkkvgdSEVQLFWEafpagsgpldrttymftyidpqagspkLEELLERYWDlmpeyqgvtldnLEIQRVIYgifptyrdsplpaAFNRILQfgdasgiqspvsfggfgsltrhlgrlstgvyeavrgdfvdsyslsllnpymklgdpvlrpflqdvikfgplaktlglvmlnkpqiipsifkqvgipvlvdwSGHFFMLGYYTLLSTFADPVIRSLLnafpprmkYEWNRYLEAWKygsgldykl
Flexible Loop (DISEMBL)
MVFlqlrhfngvshfpsqvhgkrkvsqRCICLqpqaavpsrtrrIMESisvsgevggagGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVErntlkgreqewnisrkELLELVESGILVeddideatatkfnpnrcgfegKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGScargfkdnstsdviyssssvKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAwkygsgldykl
Low Complexity Region (SEG)
MVFLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMesisvsgevggaggaysyDALKRLDQIWSNICstqtvqqeiqqvvssNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYssssvkkvGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Disordered region (IsUnstruct)
**FLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVP**TRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGL****
Disordered Region (DISOPRED)
*VF******N******************CICLQPQAAVPSRTRRIMESIS**********AYSYDALKRLDQIWS********************************VGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDY**
Disordered Region (DISEMBL)
MVFLQLRHFNGVSHFP**********QRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Disordered Region (DISPRO)
MVFLQLRHFNGVSHFPS*****RKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSS***LFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	546
225447101	583	PREDICTED: uncharacterized protein LOC10	0.994	0.931	0.75	0.0
255568683	583	conserved hypothetical protein [Ricinus	0.992	0.929	0.732	0.0
356554456	584	PREDICTED: uncharacterized protein LOC10	0.998	0.933	0.717	0.0
449453527	591	PREDICTED: uncharacterized protein LOC10	0.928	0.857	0.733	0.0
164564753	522	CM0545.530.nc [Lotus japonicus]	0.875	0.915	0.719	0.0
42569568	585	Lycopene beta/epsilon cyclase protein [A	0.998	0.931	0.658	0.0
357141364	593	PREDICTED: uncharacterized protein LOC10	0.972	0.895	0.645	0.0
308044513	593	uncharacterized protein LOC100502482 [Ze	0.923	0.849	0.659	0.0
326507200	611	predicted protein [Hordeum vulgare subsp	0.923	0.824	0.653	0.0
115476458	614	Os08g0422000 [Oryza sativa Japonica Grou	0.924	0.822	0.651	0.0

>gi|225447101|ref|XP_002273536.1| PREDICTED: uncharacterized protein LOC100241486 [Vitis vinifera] gi|297739195|emb|CBI28846.3| unnamed protein product [Vitis vinifera]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/584 (75%), Positives = 490/584 (83%), Gaps = 41/584 (7%)

Query: 1   MVFLQLRHFN-GVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG 59
           MV LQL+  N G+S  PS    +R+ + R +CLQ QA +PSRT+RIMESISVSGEVGGAG
Sbjct: 1   MVVLQLQQPNYGISQGPSLQR-RRQRALRTVCLQTQA-LPSRTQRIMESISVSGEVGGAG 58

Query: 60  GAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGT 119
           GAYSY ALKRLDQ+WS+ICS QTV QE ++VVSS  GLF  S + DKAV TFDV+VCGGT
Sbjct: 59  GAYSYSALKRLDQLWSSICSAQTVYQEPRKVVSSVPGLFKHSAVDDKAVETFDVLVCGGT 118

Query: 120 LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF 179
           LGIFIATALS KGLRV +VERN LKGREQEWNISRKELLELVE+GILVEDDI + TA KF
Sbjct: 119 LGIFIATALSSKGLRVGVVERNILKGREQEWNISRKELLELVEAGILVEDDIKQVTAAKF 178

Query: 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV 239
           NPNRCGFEGKGEIWVEDILNLGVSP KLIE+VK+RF SLGGVIFEGYSVS+IC YE+AAV
Sbjct: 179 NPNRCGFEGKGEIWVEDILNLGVSPVKLIEVVKRRFTSLGGVIFEGYSVSNICIYEDAAV 238

Query: 240 LLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSS 299
           L LAEG ILS+ L+IDAMGNFSPVVKQ+R GRKPDGVCLVVGSCARGF +NSTSDVIYSS
Sbjct: 239 LQLAEGNILSTRLLIDAMGNFSPVVKQMRGGRKPDGVCLVVGSCARGFTNNSTSDVIYSS 298

Query: 300 SSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQG 359
           SSVKKVG+SEVQ FWEAFPAGSGP+DRTTYMFTY+DPQ   PKLE+LLE YWD+MPEYQG
Sbjct: 299 SSVKKVGESEVQYFWEAFPAGSGPVDRTTYMFTYVDPQPKCPKLEDLLEDYWDMMPEYQG 358

Query: 360 VTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419
           V+L++L+I RV++GIFPTYRDSPLPAAF+RILQFGDASGIQSPVSFGGFGSLTRHL RLS
Sbjct: 359 VSLEDLQILRVVFGIFPTYRDSPLPAAFDRILQFGDASGIQSPVSFGGFGSLTRHLERLS 418

Query: 420 TGVYEAVRGDFVDSYSLSLLNPYM------------------------------------ 443
           TG+YEA+ G+F+DSY+LSLLNPYM                                    
Sbjct: 419 TGIYEAITGNFLDSYNLSLLNPYMPNLSAAWLFQRAMSAKQQYDVSPDFISELLYVNFQS 478

Query: 444 --KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLG 501
             +LGDPVLRPFLQDVI+FGPL KTLGLVML+KPQI+PSIFKQVG+PVL+DWSGHF MLG
Sbjct: 479 MQRLGDPVLRPFLQDVIQFGPLVKTLGLVMLSKPQILPSIFKQVGVPVLLDWSGHFVMLG 538

Query: 502 YYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYK 545
           YYT LSTF DP IR L+NAFP +MKY+W RYLEAWKYG+GLDYK
Sbjct: 539 YYTFLSTFIDPAIRPLINAFPAKMKYKWKRYLEAWKYGAGLDYK 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568683|ref|XP_002525313.1| conserved hypothetical protein [Ricinus communis] gi|223535372|gb|EEF37046.1| conserved hypothetical protein [Ricinus communis]

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/587 (73%), Positives = 478/587 (81%), Gaps = 45/587 (7%)

Query: 1   MVFLQLRHFNGVSHFPSQ---VHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGG 57
           M  +QL   NG+  +P     +  +++ +QR + LQ QA VPSRT+RIMESISVS EVGG
Sbjct: 1   MEVVQLGQCNGLFSYPKLSPLLQRRKERTQRSMSLQAQA-VPSRTQRIMESISVSNEVGG 59

Query: 58  AGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCG 117
           AGGAYSYDALKRLDQIWS+ICS Q   QE QQVVSS   + S+ DL+D+    FDV+VCG
Sbjct: 60  AGGAYSYDALKRLDQIWSSICS-QAATQEPQQVVSSIPYVPSRLDLTDE--DRFDVVVCG 116

Query: 118 GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT 177
           GTLGIFIA AL  KGLRV IVERN LKGREQEWNISRKELLELVE GIL E+DI++A A 
Sbjct: 117 GTLGIFIAAALIAKGLRVGIVERNILKGREQEWNISRKELLELVEVGILSENDIEKAIAA 176

Query: 178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA 237
           KFNPNRCGFE KGE+WVEDILNLGVSPAKLIEI KK FISLGGVI EGYSVSSIC YE+A
Sbjct: 177 KFNPNRCGFEDKGEVWVEDILNLGVSPAKLIEITKKHFISLGGVILEGYSVSSICVYEDA 236

Query: 238 AVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIY 297
           AVL LAEGK LS+ LIIDAMGNFSPVV+QIR GRKPDGVCLVVGSCARGF+DNSTSDVIY
Sbjct: 237 AVLQLAEGKTLSTRLIIDAMGNFSPVVRQIRGGRKPDGVCLVVGSCARGFEDNSTSDVIY 296

Query: 298 SSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEY 357
           SSSS+K +G+SEVQLFWEAFPAGSGP+DRTTYMFTY+ PQ GSPKLE+LLE YWDLMP+Y
Sbjct: 297 SSSSMKNIGESEVQLFWEAFPAGSGPMDRTTYMFTYVSPQPGSPKLEDLLENYWDLMPKY 356

Query: 358 QGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 417
           QGV+L+NLEI RVIYGIFPTY DSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR
Sbjct: 357 QGVSLENLEIMRVIYGIFPTYCDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 416

Query: 418 LSTGVYEAVRGDFVDSYSLSLLNPYM---------------------------------- 443
           LS G+YEA+ GDF+D++SLSLLNPYM                                  
Sbjct: 417 LSAGIYEAISGDFLDAHSLSLLNPYMPNLSASWLFQRAMSAKQKSNIYPEFVNDLLHVNF 476

Query: 444 ----KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFM 499
               +LGDPVLRPFLQDVI+  PLAKTLG+VML KPQIIP+IFKQVGIPVL+DWSGHF M
Sbjct: 477 QSMQRLGDPVLRPFLQDVIQLEPLAKTLGIVMLTKPQIIPAIFKQVGIPVLLDWSGHFLM 536

Query: 500 LGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 546
           L YYT LS+FADPVIR L+N  P ++KYEW R+LEAWKYGSGLDYKL
Sbjct: 537 LSYYTFLSSFADPVIRPLINVLPLKLKYEWKRHLEAWKYGSGLDYKL 583

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554456|ref|XP_003545562.1| PREDICTED: uncharacterized protein LOC100784275 [Glycine max]

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/585 (71%), Positives = 475/585 (81%), Gaps = 40/585 (6%)

Query: 1   MVFLQLRHFNGVSHFP-SQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG 59
           M+ L+L+  NG+S          +K S+R +  +PQA VPSRT+RIMES+SVSGEVGGAG
Sbjct: 1   MLLLRLQPINGISQLSVGTSFPHKKCSRRPLLSRPQA-VPSRTQRIMESVSVSGEVGGAG 59

Query: 60  GAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGT 119
           GAYSY+ALKRLDQ WS+ICS+Q V QE QQVVS+   LF  SDL+DKA G++DV+VCGGT
Sbjct: 60  GAYSYEALKRLDQQWSSICSSQEVVQEPQQVVSTIPSLFGSSDLADKAEGSYDVLVCGGT 119

Query: 120 LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF 179
           LGIFIATAL  +GLRVAIVERN LKGR+QEWNIS KELLELVE G+L EDDI+ ATA KF
Sbjct: 120 LGIFIATALCARGLRVAIVERNVLKGRDQEWNISTKELLELVEVGVLEEDDIERATAVKF 179

Query: 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV 239
           NPNRCGFE KG+IWV DILNLGVSPAKLIEIVK RFISLGGVIFEG  VS I  YE+AAV
Sbjct: 180 NPNRCGFERKGDIWVNDILNLGVSPAKLIEIVKTRFISLGGVIFEGCGVSCINVYEDAAV 239

Query: 240 LLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSS 299
           L L+  KILSS LIIDAMGNFSPVVKQIR GRKPDGVCLVVG+CARGF+ NSTSDVI+SS
Sbjct: 240 LKLSGDKILSSRLIIDAMGNFSPVVKQIRGGRKPDGVCLVVGTCARGFETNSTSDVIFSS 299

Query: 300 SSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQG 359
           SS+KKVGDS+ QLFWEAFPAGSGPLDRTTY+FTY++PQ  SPKLEELLE YWDLMPEYQG
Sbjct: 300 SSIKKVGDSKAQLFWEAFPAGSGPLDRTTYLFTYVEPQPASPKLEELLEAYWDLMPEYQG 359

Query: 360 VTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419
           V+LDNLEI RVIYGIFPTYR SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGRLS
Sbjct: 360 VSLDNLEILRVIYGIFPTYRQSPLPAAFSRVLQFGDASGIQSPVSFGGFGSLTRHLGRLS 419

Query: 420 TGVYEAVRGDFVDSYSLSLLNPYM------------------------------------ 443
            G++EA+ GD++DSYSLSLLNPYM                                    
Sbjct: 420 AGIHEAINGDYLDSYSLSLLNPYMPNLSASWLFQRAMSAKKQSNVPADFINELLYTNFSC 479

Query: 444 --KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLG 501
             +LGDPVLRPFLQDV++FGPL+KTLGLVML  P+I+PSIFKQVGIPVL+DWS HF  LG
Sbjct: 480 MQRLGDPVLRPFLQDVVQFGPLSKTLGLVMLTNPKILPSIFKQVGIPVLLDWSRHFLGLG 539

Query: 502 YYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 546
           YYT LSTFADP++R  LN  P +  ++W R+LEAWKYG+GLDYKL
Sbjct: 540 YYTFLSTFADPIVRPFLNTLPSKTSFQWKRHLEAWKYGAGLDYKL 584

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453527|ref|XP_004144508.1| PREDICTED: uncharacterized protein LOC101203820 [Cucumis sativus] gi|449493152|ref|XP_004159207.1| PREDICTED: uncharacterized LOC101203820 [Cucumis sativus]

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/545 (73%), Positives = 456/545 (83%), Gaps = 38/545 (6%)

Query: 40  SRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFS 99
           SRT+RIME ISV+GEVGGAGGAYSY+ALKRLDQIWS ICS Q + +  Q+VV   +G FS
Sbjct: 47  SRTQRIMEGISVTGEVGGAGGAYSYNALKRLDQIWSRICSDQEIPEAAQEVVRRVSGAFS 106

Query: 100 QSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLE 159
           +SDL +KA+ TFDV+VCGGTLG+FIATALS KGLR+ IVERN LKGREQEWNISRKELLE
Sbjct: 107 RSDLEEKAIDTFDVLVCGGTLGVFIATALSLKGLRIGIVERNVLKGREQEWNISRKELLE 166

Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
           LVE G++ ED+I++ATA KFNPNRC FEGKGEIWVE+ILNLGVSP KLIE+VKKRFISLG
Sbjct: 167 LVEVGVITEDEIEQATAMKFNPNRCAFEGKGEIWVENILNLGVSPEKLIELVKKRFISLG 226

Query: 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLV 279
           GVIFEG +VSSIC Y++  V+ L++G ILSS L IDAMGNFSPVVKQIR GRKPDGVCLV
Sbjct: 227 GVIFEGCNVSSICIYDDTTVMQLSDGNILSSQLTIDAMGNFSPVVKQIRRGRKPDGVCLV 286

Query: 280 VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG 339
           VGSCARGF+DNSTSDVIYSSSS++KVG SEVQLFWEAFPAGSGP+DRTTYMFTYIDPQ G
Sbjct: 287 VGSCARGFRDNSTSDVIYSSSSLRKVGSSEVQLFWEAFPAGSGPVDRTTYMFTYIDPQPG 346

Query: 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399
           SPKLEELLE YWDLMP+YQGV+LD+L+I R+IYG+FPTYR+SPLPAAF+R+LQFGDASGI
Sbjct: 347 SPKLEELLEEYWDLMPKYQGVSLDDLKILRIIYGVFPTYRNSPLPAAFDRVLQFGDASGI 406

Query: 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM---------------- 443
           QSPVSFGGFGSLTRHLGRLSTG+YEAV  +F+DS SLSLLNPYM                
Sbjct: 407 QSPVSFGGFGSLTRHLGRLSTGIYEAVTENFLDSNSLSLLNPYMPNLSSSWLFQRAMSAK 466

Query: 444 ----------------------KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSI 481
                                 +LGDPVLRPFLQDV++F PL +TLGLVML KPQ++PSI
Sbjct: 467 QRSNISPYFINELLHVNFQSMQRLGDPVLRPFLQDVVQFVPLTQTLGLVMLTKPQLLPSI 526

Query: 482 FKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSG 541
           FKQVGIPVL+DW GHF MLGYYT LSTF DP++RS L++  P+  +EW R LEAWKYG+G
Sbjct: 527 FKQVGIPVLLDWFGHFGMLGYYTFLSTFVDPIVRSFLSSLTPKETFEWKRRLEAWKYGAG 586

Query: 542 LDYKL 546
           LDYKL
Sbjct: 587 LDYKL 591

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164564753|dbj|BAF98233.1| CM0545.530.nc [Lotus japonicus]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/528 (71%), Positives = 431/528 (81%), Gaps = 50/528 (9%)

Query: 1   MVFLQLRHFNGVSH------FPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGE 54
           M+ LQL+ FNGVSH      FP     ++K S+R + L+PQA VPSRT+RIMES+SVSGE
Sbjct: 1   MLLLQLQPFNGVSHLTVGTPFP-----QKKCSRRTLLLRPQA-VPSRTQRIMESVSVSGE 54

Query: 55  VGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVI 114
           VGGAGGAYSY+ALKRLDQ+WS++CS Q V QE QQVVSS   LF  SDL++KA G++DV+
Sbjct: 55  VGGAGGAYSYEALKRLDQLWSSLCSAQEVVQEPQQVVSSIPSLFRSSDLANKAEGSYDVV 114

Query: 115 VCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEA 174
           VCGGTLGIFIATAL  +GL+VAIVERN LKGREQ+WNISRKELLELVE G+L EDDI+ A
Sbjct: 115 VCGGTLGIFIATALCARGLKVAIVERNVLKGREQDWNISRKELLELVEVGVLEEDDIERA 174

Query: 175 TATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY 234
           T+  FNPNRCGFE KG+IWV +IL+LGVSP KLIEIVK+RFISLGGVIFEG SVS I  Y
Sbjct: 175 TSINFNPNRCGFESKGDIWVNNILHLGVSPVKLIEIVKERFISLGGVIFEGCSVSCINIY 234

Query: 235 ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSD 294
           E+AAVL L+  KILSS LIIDAMGNFSP+VKQIR GRKPDGVCLVVG+CARGF+ NSTSD
Sbjct: 235 EDAAVLKLSGDKILSSRLIIDAMGNFSPIVKQIRRGRKPDGVCLVVGTCARGFESNSTSD 294

Query: 295 VIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLM 354
           VI+SSSSVKKVGDS+ Q FWEAFPA SGPLDRTTYMFTY++ Q GSPKLEELLE YWDLM
Sbjct: 295 VIFSSSSVKKVGDSQAQYFWEAFPAASGPLDRTTYMFTYVEAQPGSPKLEELLEAYWDLM 354

Query: 355 PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRH 414
           PEYQGV+LDNLEI RVIYGIFPTYR+SPLPAAF R+LQFGDASGIQSPVSFGGFGSLTRH
Sbjct: 355 PEYQGVSLDNLEILRVIYGIFPTYRESPLPAAFCRVLQFGDASGIQSPVSFGGFGSLTRH 414

Query: 415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYM------------------------------- 443
           LGR+S G+YEA+ GD++DSY+LSLLNPYM                               
Sbjct: 415 LGRISAGIYEAINGDYLDSYNLSLLNPYMPNLSASWLFQRAMSAKKQSNVPPDFINELLF 474

Query: 444 -------KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 484
                  +LGDPVLRPFLQDV++FGPL+KTLGLVML KPQI+PSIFKQ
Sbjct: 475 ANFSCMQRLGDPVLRPFLQDVVQFGPLSKTLGLVMLTKPQILPSIFKQ 522

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569568|ref|NP_180823.3| Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana] gi|110742020|dbj|BAE98947.1| hypothetical protein [Arabidopsis thaliana] gi|330253614|gb|AEC08708.1| Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/586 (65%), Positives = 453/586 (77%), Gaps = 41/586 (6%)

Query: 1   MVFLQLRHFNGV--SHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGA 58
           MV LQ+  FNG   S   +Q +  R+ +   +C+Q Q A PS T++IMESISV GE GGA
Sbjct: 1   MVVLQIHQFNGFVSSVSRAQTNQGRRRASTTVCVQTQLA-PSLTQKIMESISVGGEAGGA 59

Query: 59  GGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGG 118
           GGAYSY+ALKRLD IWSNIC+  T  QE QQ+VS  +G      + +  VGTFD++VCGG
Sbjct: 60  GGAYSYNALKRLDNIWSNICTQPTGPQETQQIVSRVSGFSQDYSMGNNLVGTFDIVVCGG 119

Query: 119 TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATK 178
           TLGIF+ATAL  KGLRVA+VERN +KGR+QEWNISRKE+ EL E  +L ED+I+E  A K
Sbjct: 120 TLGIFLATALCAKGLRVAVVERNAIKGRDQEWNISRKEMKELTEVRVLTEDEIEEVIAAK 179

Query: 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA 238
           FNPNRCGFE  G+IWVEDILNLGVSPAKL+E VK+RFISLGGVI E  S+SSI  Y + A
Sbjct: 180 FNPNRCGFENLGDIWVEDILNLGVSPAKLVETVKQRFISLGGVILEDSSLSSIVIYNDLA 239

Query: 239 VLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYS 298
           V+ L++G  LSS L+IDAMGNFSP++KQI+ GRKPDG+CLVVGSCA GFK+NS+SDVIYS
Sbjct: 240 VMQLSKGDTLSSRLVIDAMGNFSPILKQIKRGRKPDGMCLVVGSCAHGFKENSSSDVIYS 299

Query: 299 SSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQ 358
           SSSV +V DS VQLFWEAFPAGSGPLDRTTYMFTY +PQ+ SP LE+LLE YW LMP+YQ
Sbjct: 300 SSSVTRVADSNVQLFWEAFPAGSGPLDRTTYMFTYTEPQSTSPSLEDLLEEYWKLMPKYQ 359

Query: 359 GVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 418
           GV+LD LEI RV+YGIFPTYR+SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGRL
Sbjct: 360 GVSLDELEILRVVYGIFPTYRNSPLPAAFDRVLQFGDASGIQSPVSFGGFGSLTRHLGRL 419

Query: 419 STGVYEAVRGDFVDSYSLSLLNPYM----------------------------------- 443
           S G+Y+A+ GD +DS SLS LNPYM                                   
Sbjct: 420 SNGIYDAIDGDLLDSDSLSKLNPYMPNLSASWLFQRAMSAKQQLDVSRGFTNELLHVNFS 479

Query: 444 ---KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFML 500
              +LGDPVLRPFLQD+I+FGPLAKTLGLVML KPQIIPSIF+QVGIPVL+DWS HFFML
Sbjct: 480 CMQRLGDPVLRPFLQDIIQFGPLAKTLGLVMLTKPQIIPSIFRQVGIPVLLDWSVHFFML 539

Query: 501 GYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 546
           G YTLLS + DP++R  L   P + ++EW R LEAWKYG+GLDY+L
Sbjct: 540 GLYTLLSAYIDPLLRPSLEGLPSKTRFEWKRCLEAWKYGAGLDYEL 585

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357141364|ref|XP_003572198.1| PREDICTED: uncharacterized protein LOC100825935 [Brachypodium distachyon]

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/581 (64%), Positives = 444/581 (76%), Gaps = 50/581 (8%)

Query: 13  SHFPSQVHGKRKVSQRCICL----------QPQAAVPSRTRRIMESISVSGEVGGAGGAY 62
           +  P   HG R V+ R  C           +  A  PSRT+ IM+ IS   EVGGAGGAY
Sbjct: 12  AQLPWARHGGRLVAPRAGCGRRIVRVRASGEAGARPPSRTQMIMDKISGGDEVGGAGGAY 71

Query: 63  SYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGI 122
           SY ALKRLDQI S+IC +Q V  ++ ++V+   G     DL   +   FDV+VCGGTLGI
Sbjct: 72  SYGALKRLDQICSSICQSQ-VDPKVPEIVTQVQGPSVDYDLGGGS-EIFDVLVCGGTLGI 129

Query: 123 FIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN 182
           F+ATALSFKGLRV I+ERN +KGREQEWNISRKEL+E+VE GIL E ++++  ++ FNPN
Sbjct: 130 FVATALSFKGLRVGIIERNIIKGREQEWNISRKELMEIVEVGILSEGEVEQIISSDFNPN 189

Query: 183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL 242
           RCGFE KGEIWVE ILNLG+SPAKL+EI+K+RFIS GG IFEG S+SSI  +++ AVL L
Sbjct: 190 RCGFENKGEIWVEGILNLGISPAKLVEIMKERFISSGGAIFEGKSLSSISVHDDLAVLKL 249

Query: 243 AEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSV 302
           ++G  L   L++DAMGNFSP+V+QIRSGRKPDG+CLVVG+CARGF+ N+TSDVI+SSSSV
Sbjct: 250 SDGDCLPCRLVVDAMGNFSPIVRQIRSGRKPDGLCLVVGACARGFERNTTSDVIFSSSSV 309

Query: 303 KKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTL 362
           KK G+S VQLFWEAFPAGSGP DRTTYMFTY+DPQ G PKLEELLE YWDLMPEYQ VTL
Sbjct: 310 KKAGNSGVQLFWEAFPAGSGPADRTTYMFTYVDPQFGFPKLEELLEIYWDLMPEYQDVTL 369

Query: 363 DNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 422
           + L+I+RVI+GIFPT+RDSPLPAAF+RILQ GDASGIQSPVSFGGFGSLTRHLGRLS G+
Sbjct: 370 ETLDIRRVIFGIFPTHRDSPLPAAFDRILQVGDASGIQSPVSFGGFGSLTRHLGRLSNGI 429

Query: 423 YEAVRGDFVDSYSLSLLNPYM--------------------------------------K 444
           YEAV GDF+D+YSL LLNPYM                                      K
Sbjct: 430 YEAVSGDFLDAYSLRLLNPYMPNLSASWLFQRAMSTRPQTNVSPTFINELLYANFQSMQK 489

Query: 445 LGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYT 504
           LGD VLRPFLQDVI+FGPL KTLGLVML++PQI+PSIFKQVG+ V+++WSGHF MLGYYT
Sbjct: 490 LGDSVLRPFLQDVIQFGPLVKTLGLVMLSRPQILPSIFKQVGLGVILNWSGHFVMLGYYT 549

Query: 505 LLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYK 545
            LS F DPV+R  + + PPR KY+W RYLEAWKYG+GLDY+
Sbjct: 550 FLSNFIDPVVRPWVESLPPRNKYQWKRYLEAWKYGAGLDYR 590

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308044513|ref|NP_001183889.1| uncharacterized protein LOC100502482 [Zea mays] gi|238015286|gb|ACR38678.1| unknown [Zea mays] gi|413922261|gb|AFW62193.1| hypothetical protein ZEAMMB73_528743 [Zea mays]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/544 (65%), Positives = 429/544 (78%), Gaps = 40/544 (7%)

Query: 40  SRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFS 99
           SRT+ IM+ IS    VGGAGGAYSY ALKRLDQIWS+IC  Q    ++ +VV+   GL +
Sbjct: 49  SRTQMIMDKISAGEGVGGAGGAYSYSALKRLDQIWSSICEAQA-DSKVPEVVTRVEGLLA 107

Query: 100 QSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLE 159
            SDL   +   FDVIVCGGTLGIF+ATALS KGLR+ I+ERN +KGREQEWNISRKEL+E
Sbjct: 108 DSDLGSGS-EIFDVIVCGGTLGIFVATALSSKGLRIGIIERNIIKGREQEWNISRKELME 166

Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
           +VE GIL E ++++  ++ FNPNRCGFE KGEIWVE+ILNLGVSPAKL+E +K+RFIS G
Sbjct: 167 IVEIGILSEAELEQIISSDFNPNRCGFEDKGEIWVENILNLGVSPAKLVENMKERFISSG 226

Query: 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLV 279
           G IFE  S+SSI  Y++ AVL L++G  LS  L++DAMGNFSP+V+QIRSGRKPDG+CLV
Sbjct: 227 GAIFEEKSLSSIYVYDDLAVLKLSDGDSLSCRLVVDAMGNFSPIVRQIRSGRKPDGMCLV 286

Query: 280 VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAG 339
           VG+CA GF+ N+TSD+I+SSSSVK+ G+S VQLFWEAFPAGSGP DRTTYMFTY+DP  G
Sbjct: 287 VGACAHGFEKNTTSDIIFSSSSVKRAGNSGVQLFWEAFPAGSGPNDRTTYMFTYVDPTFG 346

Query: 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 399
            PKLEELLE +WDLMP YQ V L NL+I+RVI+GIFPTYRDSPLPAAF+RILQ GDASGI
Sbjct: 347 GPKLEELLEVFWDLMPAYQDVLLQNLDIRRVIFGIFPTYRDSPLPAAFDRILQVGDASGI 406

Query: 400 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM---------------- 443
           QSPVSFGGFGSLTRHLGRLS+G+ EAV GDF+D++SL LLNPYM                
Sbjct: 407 QSPVSFGGFGSLTRHLGRLSSGICEAVEGDFLDAHSLQLLNPYMPNLSASWLFQRAMSVR 466

Query: 444 ----------------------KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSI 481
                                 KLGD VLRPFLQDVI+FGPL KTLGLVM+ +PQI+PSI
Sbjct: 467 PHVNVSPTFINELLFANFQSMQKLGDSVLRPFLQDVIQFGPLVKTLGLVMITRPQILPSI 526

Query: 482 FKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSG 541
           FKQVG+ V+++WSGHF MLGYYT LST+ DP++RS + + PPR KY+W RYLEAW+YG+G
Sbjct: 527 FKQVGLGVILEWSGHFMMLGYYTFLSTYIDPILRSWVESLPPRDKYQWKRYLEAWRYGAG 586

Query: 542 LDYK 545
           LDY+
Sbjct: 587 LDYR 590

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326507200|dbj|BAJ95677.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/551 (65%), Positives = 426/551 (77%), Gaps = 47/551 (8%)

Query: 39  PSRTRRIMESISVSG-EVGGAGGAYSYDALKRLDQIWSNICST---QTVQQEIQQVVSSN 94
           PSRT+ IM+ IS +G EVGGAGGAYSYDALKRLDQI S+ICS     +  +   Q+V+  
Sbjct: 59  PSRTQTIMDKISSAGDEVGGAGGAYSYDALKRLDQICSSICSAPQEASSSKAPPQIVTRV 118

Query: 95  AGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISR 154
            G    +  +D    TFDV+VCGGTLGIFIATALS++GLRV IVERN +KGREQEWNISR
Sbjct: 119 QGPARAA--ADLGAETFDVLVCGGTLGIFIATALSYRGLRVGIVERNAVKGREQEWNISR 176

Query: 155 KELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKR 214
           KEL+E+V+ GIL E + ++   + FNPNRCGFEGKGEIWVEDIL+LG+SPAKL+EI+K R
Sbjct: 177 KELMEIVQVGILSEAEAEQVVTSDFNPNRCGFEGKGEIWVEDILHLGISPAKLVEIMKAR 236

Query: 215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPD 274
           FIS GG IFEG SVSSI  +++ AVL L++G  L   L++DAMGNFSP+V+QIRSGR+PD
Sbjct: 237 FISSGGEIFEGKSVSSISVHDDLAVLKLSDGDRLRCRLVVDAMGNFSPIVRQIRSGRRPD 296

Query: 275 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSE---VQLFWEAFPAGSGPLDRTTYMF 331
           G+CLVVG+CARGF+ N+TSDVI+SSSSVK VG      VQLFWEAFPAGSGP DRTTYMF
Sbjct: 297 GLCLVVGACARGFEKNTTSDVIFSSSSVKSVGGDSGRGVQLFWEAFPAGSGPTDRTTYMF 356

Query: 332 TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRIL 391
           TY+DPQ GSPKLEELLE +WDLMP YQ   L+NL+I+RVIYGIFPTYRDSPLPAAF+RIL
Sbjct: 357 TYVDPQFGSPKLEELLEMFWDLMPGYQDTVLENLDIRRVIYGIFPTYRDSPLPAAFDRIL 416

Query: 392 QFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM-------- 443
           Q GDASGIQSPVSFGGFGSLTRHLGRLS GVYEAV GDF+D+ SL LLNPYM        
Sbjct: 417 QVGDASGIQSPVSFGGFGSLTRHLGRLSNGVYEAVSGDFLDAQSLKLLNPYMPNLSASWL 476

Query: 444 ------------------------------KLGDPVLRPFLQDVIKFGPLAKTLGLVMLN 473
                                         KLGD VLRPFLQDVI+FGPL KTLGLVM++
Sbjct: 477 FQRAMSTRPGSDISPTFINELLFANFQSMQKLGDSVLRPFLQDVIQFGPLVKTLGLVMIS 536

Query: 474 KPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYL 533
           +PQI+P IFKQVG+ V+++WSGHF MLGYYT LS+F  P +   + +  PR +Y+W+RYL
Sbjct: 537 RPQILPEIFKQVGVGVILNWSGHFVMLGYYTFLSSFVGPAVTPWVKSLAPRDRYQWDRYL 596

Query: 534 EAWKYGSGLDY 544
           EAW+YG+GLDY
Sbjct: 597 EAWEYGAGLDY 607

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476458|ref|NP_001061825.1| Os08g0422000 [Oryza sativa Japonica Group] gi|37573089|dbj|BAC98659.1| Glycine/D-amino acid oxidases-like [Oryza sativa Japonica Group] gi|113623794|dbj|BAF23739.1| Os08g0422000 [Oryza sativa Japonica Group] gi|215695103|dbj|BAG90294.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640571|gb|EEE68703.1| hypothetical protein OsJ_27354 [Oryza sativa Japonica Group]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/545 (65%), Positives = 426/545 (78%), Gaps = 40/545 (7%)

Query: 39  PSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLF 98
           PSRT+ IM+ IS   EVGGAGGAYSY+ALKRLDQIWS+IC  Q+   ++ +VV+   G  
Sbjct: 69  PSRTQMIMDKISSGEEVGGAGGAYSYNALKRLDQIWSSICEAQS-DSKVPEVVTRVQGPL 127

Query: 99  SQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL 158
              DL D +   FDV+VCGGTLGIF+ATALS+KGLRV I+ERN +KGREQEWNISRKEL+
Sbjct: 128 VDYDLGDGSE-IFDVLVCGGTLGIFVATALSYKGLRVGIIERNIIKGREQEWNISRKELM 186

Query: 159 ELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL 218
           ELVE GIL E++I++  ++ FNP RC FE KGEIWVE+ILNLG+SPAKL+EI+K+RF+S 
Sbjct: 187 ELVEVGILSEEEIEQIISSDFNPTRCAFESKGEIWVENILNLGISPAKLVEIMKERFVSS 246

Query: 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCL 278
           GG IFEG S+SSI  +++ AVL L++G  L   L+IDAMGNFSP+V+QIRSGRKPDGVCL
Sbjct: 247 GGAIFEGKSLSSISVHDDFAVLNLSDGGSLPCRLVIDAMGNFSPIVRQIRSGRKPDGVCL 306

Query: 279 VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA 338
           VVG+CARGF  N+TSD+I+SSSS+K+ G+S VQLFWE FPAGSGP DRTTYMFTY+DP +
Sbjct: 307 VVGTCARGFDRNTTSDIIFSSSSIKRAGNSGVQLFWEGFPAGSGPTDRTTYMFTYVDPHS 366

Query: 339 GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG 398
           G PKLEELLE +WDLMP Y+ V L+NL+I RVI+GIFPTYR+SPLPAAF+R+LQ GDASG
Sbjct: 367 GGPKLEELLETFWDLMPAYEDVVLENLDIMRVIFGIFPTYRNSPLPAAFDRVLQVGDASG 426

Query: 399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM--------------- 443
           IQSPVSFGGFGSLTRHLGRLS G+YEAV GD +D+ SL LLNPYM               
Sbjct: 427 IQSPVSFGGFGSLTRHLGRLSNGIYEAVSGDLLDARSLQLLNPYMPNLSASWLFQRAMSA 486

Query: 444 -----------------------KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPS 480
                                  KLGD VLRPFLQDVI+FGPL KTLGLVM+ +PQI+PS
Sbjct: 487 RPQIDVSPTFINELLFANFESMQKLGDSVLRPFLQDVIQFGPLVKTLGLVMITRPQILPS 546

Query: 481 IFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGS 540
           IFKQ G  V+++WSGHF MLGYYT LSTF DP++R  + + P R KY+W RYLEAWKYG+
Sbjct: 547 IFKQAGPGVILNWSGHFVMLGYYTFLSTFIDPILRPWVESLPLRNKYQWKRYLEAWKYGA 606

Query: 541 GLDYK 545
           GLDY+
Sbjct: 607 GLDYR 611

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	546
TAIR|locus:2046422	585	AT2G32640 [Arabidopsis thalian	0.807	0.753	0.639	2.1e-191

TAIR|locus:2046422 AT2G32640 [Arabidopsis thaliana (taxid:3702)]

 Score = 1454 (516.9 bits), Expect = 2.1e-191, Sum P(2) = 2.1e-191
 Identities = 285/446 (63%), Positives = 336/446 (75%)

Query:     1 MVFLQLRHFNG-VSHFP-SQVHGKRKVSQRCICLQPQAAVPSRTRRIMXXXXXXXXXXXX 58
             MV LQ+  FNG VS    +Q +  R+ +   +C+Q Q A PS T++IM            
Sbjct:     1 MVVLQIHQFNGFVSSVSRAQTNQGRRRASTTVCVQTQLA-PSLTQKIMESISVGGEAGGA 59

Query:    59 XXXXXXDALKRLDQIWSNICXXXXXXXXXXXXXXXNAGLFSQS-DLSDKAVGTFDVIVCG 117
                   +ALKRLD IWSNIC                +G FSQ   + +  VGTFD++VCG
Sbjct:    60 GGAYSYNALKRLDNIWSNICTQPTGPQETQQIVSRVSG-FSQDYSMGNNLVGTFDIVVCG 118

Query:   118 GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT 177
             GTLGIF+ATAL  KGLRVA+VERN +KGR+QEWNISRKE+ EL E  +L ED+I+E  A 
Sbjct:   119 GTLGIFLATALCAKGLRVAVVERNAIKGRDQEWNISRKEMKELTEVRVLTEDEIEEVIAA 178

Query:   178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA 237
             KFNPNRCGFE  G+IWVEDILNLGVSPAKL+E VK+RFISLGGVI E  S+SSI  Y + 
Sbjct:   179 KFNPNRCGFENLGDIWVEDILNLGVSPAKLVETVKQRFISLGGVILEDSSLSSIVIYNDL 238

Query:   238 AVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIY 297
             AV+ L++G  LSS L+IDAMGNFSP++KQI+ GRKPDG+CLVVGSCA GFK+NS+SDVIY
Sbjct:   239 AVMQLSKGDTLSSRLVIDAMGNFSPILKQIKRGRKPDGMCLVVGSCAHGFKENSSSDVIY 298

Query:   298 XXXXXXXXGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEY 357
                      DS VQLFWEAFPAGSGPLDRTTYMFTY +PQ+ SP LE+LLE YW LMP+Y
Sbjct:   299 SSSSVTRVADSNVQLFWEAFPAGSGPLDRTTYMFTYTEPQSTSPSLEDLLEEYWKLMPKY 358

Query:   358 QGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 417
             QGV+LD LEI RV+YGIFPTYR+SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGR
Sbjct:   359 QGVSLDELEILRVVYGIFPTYRNSPLPAAFDRVLQFGDASGIQSPVSFGGFGSLTRHLGR 418

Query:   418 LSTGVYEAVRGDFVDSYSLSLLNPYM 443
             LS G+Y+A+ GD +DS SLS LNPYM
Sbjct:   419 LSNGIYDAIDGDLLDSDSLSKLNPYM 444

GO:0016117 "carotenoid biosynthetic process" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	546
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	3e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	4e-04

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 67/301 (22%), Positives = 120/301 (39%), Gaps = 25/301 (8%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN--ISRKELLELVESGILV 167
           +DV+V G G  G   A  L+ KGLRV ++E+ +   R +     +S + L EL   G L+
Sbjct: 1   YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF-PRYKPCGGALSPRALEELDLPGELI 59

Query: 168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYS 227
            + +    A  F+PN        EI +E  L   +      E + +R    G  +  G  
Sbjct: 60  VNLVR--GARFFSPN----GDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTR 113

Query: 228 VSSICTYENAAVLLLAEGKI-LSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG 286
           V  +  +++  V+++   +  +++ ++I A G+ S V K++   ++P       G  AR 
Sbjct: 114 VLDVEIHDDRVVVIVRGSEGTVTAKIVIGADGSRSIVAKKLGLKKEPR----EYGVAARA 169

Query: 287 FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEEL 346
             +    +V      V          +   FP G G       + +    +   PK  + 
Sbjct: 170 EVEMPDEEVDEDFVEVYIDRGIVPGGYGWVFPKGDGTA--NVGVGSRSAEEGEDPK--KY 225

Query: 347 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406
           L+ +    PE     L + E   V   + P             +L  GDA+G  +P++  
Sbjct: 226 LKDFLARRPE-----LKDAETVEVCGALIPI-GRPDEKLVRGNVLLVGDAAGHVNPLTGE 279

Query: 407 G 407
           G
Sbjct: 280 G 280

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 66/305 (21%), Positives = 113/305 (37%), Gaps = 26/305 (8%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGIL-- 166
            +DV++ G G  G   A  L+  GL V ++E+ +  G       ++      +    L  
Sbjct: 3   EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG-------AKPCCGGGLSPRALEE 55

Query: 167 VEDDIDEATATKFNPNRCGFEG-KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEG 225
           +  D DE    K    R  F G K  I V       V  AK  + + +R    G  ++ G
Sbjct: 56  LIPDFDEEIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPG 115

Query: 226 YSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPVVKQI-RSGRKPDGVCLVVGSC 283
             V+ +   ++  V+ +  G   + + ++IDA G  S + +++    RKP+   + V   
Sbjct: 116 TRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEV 175

Query: 284 ARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPL-DRTTYMFTYIDPQAGSPK 342
                D    + +Y    V   G      +   FP G G        +            
Sbjct: 176 IEVPDDGDVEEFLYGPLDVGPGG------YGWIFPLGDGHANVGIGVLLDDPSL----SP 225

Query: 343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402
             ELLER+ +         L   +I     G  P    +  P   + +L  GDA+G  +P
Sbjct: 226 FLELLERFKE--HPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNP 283

Query: 403 VSFGG 407
           ++  G
Sbjct: 284 LTGEG 288

Length = 396

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	546
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
PRK08013	400	oxidoreductase; Provisional	100.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.98
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.98
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.98
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.98
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.98
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.97
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.97
PLN02463	447	lycopene beta cyclase	99.97
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.97
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.97
PRK06996	398	hypothetical protein; Provisional	99.97
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.97
PRK08244	493	hypothetical protein; Provisional	99.97
PRK09126	392	hypothetical protein; Provisional	99.97
PRK06834	488	hypothetical protein; Provisional	99.97
PRK10015	429	oxidoreductase; Provisional	99.97
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.97
PLN02697	529	lycopene epsilon cyclase	99.96
PRK07190	487	hypothetical protein; Provisional	99.96
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.96
PRK07045	388	putative monooxygenase; Reviewed	99.96
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.96
PRK10157	428	putative oxidoreductase FixC; Provisional	99.96
PRK06184	502	hypothetical protein; Provisional	99.96
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.96
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.96
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.96
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.95
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.95
PRK11445	351	putative oxidoreductase; Provisional	99.95
PRK07538	413	hypothetical protein; Provisional	99.95
PRK08294	634	phenol 2-monooxygenase; Provisional	99.95
PRK06475	400	salicylate hydroxylase; Provisional	99.95
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.95
PTZ00367	567	squalene epoxidase; Provisional	99.95
PRK06753	373	hypothetical protein; Provisional	99.95
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.94
PRK07588	391	hypothetical protein; Provisional	99.94
PLN02985	514	squalene monooxygenase	99.94
PRK05868	372	hypothetical protein; Validated	99.94
PRK08163	396	salicylate hydroxylase; Provisional	99.94
PRK06126	545	hypothetical protein; Provisional	99.94
PRK07236	386	hypothetical protein; Provisional	99.93
PRK06847	375	hypothetical protein; Provisional	99.93
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.92
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.92
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.91
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.9
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.87
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.86
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.81
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.8
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.78
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.42
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.4
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.31
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.3
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.29
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.24
COG2081	408	Predicted flavoproteins [General function predicti	99.22
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.2
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.16
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.11
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.09
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.06
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.05
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.04
COG0579	429	Predicted dehydrogenase [General function predicti	99.0
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.99
PRK05257	494	malate:quinone oxidoreductase; Validated	98.96
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.96
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.92
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.92
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.92
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.88
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.87
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.86
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.84
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.81
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.81
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.78
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.77
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.76
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.75
PLN02661	357	Putative thiazole synthesis	98.71
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.69
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.68
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.68
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.65
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.65
PRK07804	541	L-aspartate oxidase; Provisional	98.65
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.65
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.63
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.61
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.58
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.58
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.56
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.56
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.55
PRK07121	492	hypothetical protein; Validated	98.55
PRK08274	466	tricarballylate dehydrogenase; Validated	98.55
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.52
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.5
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.49
PRK06175	433	L-aspartate oxidase; Provisional	98.49
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.48
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.48
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.47
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.47
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.47
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.44
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.38
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.38
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.37
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.37
PRK08401	466	L-aspartate oxidase; Provisional	98.36
PRK08275	554	putative oxidoreductase; Provisional	98.36
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.36
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.35
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.35
PRK07233	434	hypothetical protein; Provisional	98.33
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.31
PLN02815	594	L-aspartate oxidase	98.3
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.29
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.29
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.28
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.27
PRK08071	510	L-aspartate oxidase; Provisional	98.26
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.25
PRK09897	534	hypothetical protein; Provisional	98.25
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.24
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.24
PTZ00058	561	glutathione reductase; Provisional	98.24
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.24
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.22
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.21
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.21
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.2
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.19
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.17
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.17
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.17
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.17
PRK10262	321	thioredoxin reductase; Provisional	98.16
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.16
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.15
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.15
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.15
PRK12839	572	hypothetical protein; Provisional	98.13
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.11
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.1
PLN02612	567	phytoene desaturase	98.09
PRK06370	463	mercuric reductase; Validated	98.08
PRK14694	468	putative mercuric reductase; Provisional	98.08
PRK07395	553	L-aspartate oxidase; Provisional	98.07
PRK06116	450	glutathione reductase; Validated	98.07
PRK09077	536	L-aspartate oxidase; Provisional	98.06
PRK07512	513	L-aspartate oxidase; Provisional	98.04
PLN02507	499	glutathione reductase	98.04
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.04
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.03
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.03
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.02
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.99
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.99
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.97
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.97
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.97
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.97
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.96
KOG2853	509	consensus Possible oxidoreductase [General functio	97.95
PLN02546	558	glutathione reductase	97.94
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.93
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.92
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.9
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.9
PRK13748	561	putative mercuric reductase; Provisional	97.89
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.88
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.86
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.83
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.83
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.82
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.8
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.79
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.77
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.77
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.74
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.74
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.73
PRK07846	451	mycothione reductase; Reviewed	97.73
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.73
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.71
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.69
TIGR02053	463	MerA mercuric reductase. This model represents the	97.68
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.67
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.64
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.62
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.58
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.56
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.55
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.55
PRK14727	479	putative mercuric reductase; Provisional	97.54
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.5
PTZ00052	499	thioredoxin reductase; Provisional	97.49
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.49
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.48
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.48
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.45
PLN02568	539	polyamine oxidase	97.42
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.41
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.41
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.34
PRK12831	464	putative oxidoreductase; Provisional	97.31
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.3
PRK06116	450	glutathione reductase; Validated	97.29
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.28
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.25
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.2
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.19
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.18
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.17
PLN02507	499	glutathione reductase	97.16
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.11
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.1
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.09
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.07
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.06
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.06
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.05
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.04
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.04
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.0
PRK06370	463	mercuric reductase; Validated	96.99
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.99
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.98
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.95
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.95
PRK07846	451	mycothione reductase; Reviewed	96.93
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.92
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	96.92
PRK02106	560	choline dehydrogenase; Validated	96.92
PTZ00052	499	thioredoxin reductase; Provisional	96.92
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.91
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.91
TIGR02053	463	MerA mercuric reductase. This model represents the	96.9
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.9
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.89
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.88
PLN02576	496	protoporphyrinogen oxidase	96.87
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.86
PRK13977	576	myosin-cross-reactive antigen; Provisional	96.85
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	96.82
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.82
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.81
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	96.78
PRK14727	479	putative mercuric reductase; Provisional	96.78
PRK07208	479	hypothetical protein; Provisional	96.74
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.71
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.7
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.68
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.68
PRK13748	561	putative mercuric reductase; Provisional	96.64
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.63
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.62
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.61
PRK14694	468	putative mercuric reductase; Provisional	96.61
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.61
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	96.55
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.54
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.54
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.52
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.48
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.45
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	96.39
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.39
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.37
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	96.35
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.34
PLN02268	435	probable polyamine oxidase	96.26
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.25
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	96.25
PTZ00058	561	glutathione reductase; Provisional	96.24
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.24
COG3573	552	Predicted oxidoreductase [General function predict	96.2
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.2
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	96.17
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.12
PLN02676	487	polyamine oxidase	96.1
PLN02785	587	Protein HOTHEAD	96.09
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.08
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.04
COG3349	485	Uncharacterized conserved protein [Function unknow	96.04
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.01
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.96
KOG2852	380	consensus Possible oxidoreductase [General functio	95.95
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.94
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.9
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.82
PLN02546	558	glutathione reductase	95.78
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	95.72
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.71
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.68
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.68
PLN02852	491	ferredoxin-NADP+ reductase	95.63
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.61
PLN02328	808	lysine-specific histone demethylase 1 homolog	95.5
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.49
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.47
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.46
PRK10262	321	thioredoxin reductase; Provisional	95.42
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	95.41
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	95.32
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.31
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.28
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	95.21
PLN02529	738	lysine-specific histone demethylase 1	95.21
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.09
KOG2960	328	consensus Protein involved in thiamine biosynthesi	95.07
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	95.07
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	94.98
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.9
PLN02487	569	zeta-carotene desaturase	94.84
PRK13984	604	putative oxidoreductase; Provisional	94.82
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	94.73
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	94.68
PRK06567	1028	putative bifunctional glutamate synthase subunit b	94.64
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	94.44
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	94.43
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	94.37
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	94.36
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	93.83
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	93.79
PLN02976	1713	amine oxidase	93.78
PLN03000	881	amine oxidase	93.67
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.41
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	93.29
PTZ00188	506	adrenodoxin reductase; Provisional	93.19
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	93.07
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	92.97
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	92.9
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	92.65
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	92.61
COG2907	447	Predicted NAD/FAD-binding protein [General functio	91.89
PRK12770	352	putative glutamate synthase subunit beta; Provisio	91.88
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	91.86
PRK12831	464	putative oxidoreductase; Provisional	91.82
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	91.6
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	91.52
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.48
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	91.46
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	91.45
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	90.99
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	90.94
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	90.84
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	90.68
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	90.57
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.6
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	89.31
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	88.95
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	88.77
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	88.41
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	88.37
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	88.01
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	87.95
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	87.94
PRK13230	279	nitrogenase reductase-like protein; Reviewed	87.91
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	87.52
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	87.03
PRK12814	652	putative NADPH-dependent glutamate synthase small	86.92
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	86.86
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	86.74
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	86.73
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	86.61
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	86.51
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	86.48
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	86.2
PRK13232	273	nifH nitrogenase reductase; Reviewed	86.08
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	86.02
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	85.72
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.69
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	85.48
COG0569	225	TrkA K+ transport systems, NAD-binding component [	85.46
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.44
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	85.37
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	85.37
PRK15116	268	sulfur acceptor protein CsdL; Provisional	85.27
PLN02676	487	polyamine oxidase	85.2
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.91
PRK08223	287	hypothetical protein; Validated	84.85
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	84.78
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	84.59
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.37
TIGR01287	275	nifH nitrogenase iron protein. This model describe	84.35
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.03
PRK13235	274	nifH nitrogenase reductase; Reviewed	83.97
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.55
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	83.53
cd02032	267	Bchl_like This family of proteins contains bchL an	83.31
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	83.28
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	83.07
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	83.02
cd02040	270	NifH NifH gene encodes component II (iron protein)	82.99
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	82.91
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	82.8
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	82.77
PRK08328	231	hypothetical protein; Provisional	82.55
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	82.55
cd02117	212	NifH_like This family contains the NifH (iron prot	82.36
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	82.18
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	81.92
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	81.63
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	81.6
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	81.59
PRK04148	134	hypothetical protein; Provisional	81.35
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	81.21
PRK13234	295	nifH nitrogenase reductase; Reviewed	81.09
PRK13236	296	nitrogenase reductase; Reviewed	80.78
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	80.78
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	80.7
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	80.7
PRK06719	157	precorrin-2 dehydrogenase; Validated	80.69
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.68
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.65
CHL00072	290	chlL photochlorophyllide reductase subunit L	80.61
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	80.16

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=1.2e-32  Score=292.40  Aligned_cols=345  Identities=18%  Similarity=0.218  Sum_probs=217.7

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC--CCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhcc------C
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT--LKGREQEWNISRKELLELVESGILVEDDIDEATATKF------N  180 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~--~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~------~  180 (546)
                      .+||+|||| ++|+++|+.|+++|++|+||||.+  +....+...|++++++.|+++|+++.  ++..-...+      .
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~--i~~~~~~~~~~~~~~~   79 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR--LEALGVPPLHVMVVDD   79 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhh--hhhccCCceeeEEEec
Confidence            589999996 569999999999999999999982  22334678899999999999999532  222111000      1


Q ss_pred             C--CcccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEc-CCcEEEcCEEEEe
Q 009027          181 P--NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDA  256 (546)
Q Consensus       181 ~--~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~-~g~~i~ArlVV~A  256 (546)
                      .  ..+.|... .... ..+++.+.+..|.+.|.+++.+.+ ++++++++|+.+..+++.+.++++ +|++++||+||+|
T Consensus        80 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgA  157 (387)
T COG0654          80 GGRRLLIFDAA-ELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGA  157 (387)
T ss_pred             CCceeEEeccc-ccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEEC
Confidence            1  12333321 1111 345688999999999999999887 699999999999999999999998 8999999999999


Q ss_pred             cCCChHHHHHhcCCC----CCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE
Q 009027          257 MGNFSPVVKQIRSGR----KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT  332 (546)
Q Consensus       257 DG~~S~vr~ql~~~~----~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~  332 (546)
                      ||.+|.+|+++++..    .+...++++.......+.....+.+...+++.            .+|.++.   ....++.
T Consensus       158 DG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~p~~~~---~~~~~~~  222 (387)
T COG0654         158 DGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFA------------LLPLPDN---RSSVVWS  222 (387)
T ss_pred             CCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceE------------EEecCCC---ceeEEEE
Confidence            999999999998332    23333333221111011122222333222221            3344321   1222221


Q ss_pred             ccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcch
Q 009027          333 YIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFG  409 (546)
Q Consensus       333 ~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g  409 (546)
                      ......   ...+.+++.+.+...+|....  +....... ....+|.....+.++..+|++|+|||||.+||++|||+|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~n  299 (387)
T COG0654         223 LPPGPAEDLQGLSDEEFLRELQRRLGERDP--LGRVTLVS-SRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGAN  299 (387)
T ss_pred             CChhhHHHHhcCCHHHHHHHHHHhcCcccc--cceEEEcc-ccccccccchhhhheecCcEEEEeeccccCCCccccchh
Confidence            111000   011333333444444444311  11111111 113567765566688889999999999999999999999


Q ss_pred             hhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcChh
Q 009027          410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIP  488 (546)
Q Consensus       410 ~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g~~  488 (546)
                      ++++|+..|++.|..+...+. +   ...|++|++.-    +.....   +..++. .+...+.+.......++..++.
T Consensus       300 lgl~Da~~La~~L~~~~~~~~-~---~~~L~~Y~~~R----~~~~~~---~~~~s~-~~~~~~~~~~~~~~~~r~~~l~  366 (387)
T COG0654         300 LALEDAAALAEALAAAPRPGA-D---AAALAAYEARR----RPRAEA---IQKLSR-ALGRLFSADGPFARFLRNLGLR  366 (387)
T ss_pred             hhhhhHHHHHHHHHHHhhcCc-c---HHHHHHHHHhh----hhHHHH---HHHHHH-HHhhhhccCCcHHHHHHHHHHH
Confidence            999999999999999987432 2   55678999211    111111   111122 2334456677777777776665

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=2.5e-32  Score=289.74  Aligned_cols=344  Identities=17%  Similarity=0.149  Sum_probs=213.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-------cccccCCHHHHHHHHHcCCCCcccchhhh------
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDEAT------  175 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-------~r~~~Is~~~l~~L~~lGl~~~~~ie~~i------  175 (546)
                      +|||+||||| +|+++|+.|+++|++|+|+|+.+.+..       .+...+++.+++.|+.+|+|+..+-....      
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            6999999965 699999999999999999999864321       13457899999999999999752210000      


Q ss_pred             hhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 009027          176 ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (546)
Q Consensus       176 ~~~~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV  254 (546)
                      ...+....+.|... .... ..+++.+++..|++.|.+++.+. |++++.+++++++..+++++.|++++|++++|++||
T Consensus        85 ~~~~~~~~~~~~~~-~~~~-~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI  162 (391)
T PRK08020         85 TWEWETAHVVFDAA-ELKL-PELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVI  162 (391)
T ss_pred             EEeCCCCeEEeccc-ccCC-CccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence            00111222323211 1111 22456799999999999998876 889999999999988888899988888899999999


Q ss_pred             EecCCChHHHHHhcCCC---CCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027          255 DAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (546)
Q Consensus       255 ~ADG~~S~vr~ql~~~~---~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~  331 (546)
                      +|||.+|++|++++.+.   .+.+.+.++.......+.....+.+...++           .. .+|..++   .. .+.
T Consensus       163 ~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~-~~p~~~~---~~-~~v  226 (391)
T PRK08020        163 GADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGP-----------RA-FLPLFDN---WA-SLV  226 (391)
T ss_pred             EeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCC-----------EE-EeECCCC---cE-EEE
Confidence            99999999999998653   223334332221111111111122222111           11 2344322   11 122


Q ss_pred             EccCCCC----CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 009027          332 TYIDPQA----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG  407 (546)
Q Consensus       332 ~~~~~~~----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G  407 (546)
                      .+.....    ...+.+++.+.+.+.+|..    +..+...  ....+|+......++..+|++|+|||||.+||+.|||
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG  300 (391)
T PRK08020        227 WYDSPARIRQLQAMSMAQLQQEIAAHFPAR----LGAVTPV--AAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQG  300 (391)
T ss_pred             EECCHHHHHHHHCCCHHHHHHHHHHHhhhh----ccceEec--cccEeecceeehhhhccCcEEEEechhhccCCcccch
Confidence            2211100    0012233333333333221    1111111  2245677655556788899999999999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhh--cCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhc
Q 009027          408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK--LGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQV  485 (546)
Q Consensus       408 ~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~--l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~  485 (546)
                      +|++++|+..|++.+.++.+.+. +......|+.|++  .++......         .+.. +...+.++......+|..
T Consensus       301 ~n~al~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~---------~~~~-l~~~~~~~~~~~~~~R~~  369 (391)
T PRK08020        301 VNLGYRDVDALLDVLVNARSYGE-AWASEAVLKRYQRRRMADNLLMQS---------GMDL-FYAGFSNNLPPLRFARNL  369 (391)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHHHHHH---------HHHH-HHHHHcCCchHHHHHHHH
Confidence            99999999999999998876543 3334456789992  222222111         2222 333456666677777776


Q ss_pred             Chh
Q 009027          486 GIP  488 (546)
Q Consensus       486 g~~  488 (546)
                      ++.
T Consensus       370 ~l~  372 (391)
T PRK08020        370 GLM  372 (391)
T ss_pred             HHH
Confidence            665

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=1.3e-32  Score=293.46  Aligned_cols=311  Identities=17%  Similarity=0.152  Sum_probs=196.0

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-------cccccCCHHHHHHHHHcCCCCcccchhh-hhhcc-
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDEA-TATKF-  179 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-------~r~~~Is~~~l~~L~~lGl~~~~~ie~~-i~~~~-  179 (546)
                      +|||+|||| ++|+++|+.|+++|++|+|+||.+.+..       .+...|++.+++.|+++|+|+...-... ..... 
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~   82 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME   82 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence            589999996 5799999999999999999999886432       2445689999999999999865211100 00000 


Q ss_pred             --CC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEE
Q 009027          180 --NP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (546)
Q Consensus       180 --~~---~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlV  253 (546)
                        ..   ..+.|... .... ...++.+++..|++.|.+++.+. |++++.+++++++..+++++.|++.+|++++||+|
T Consensus        83 ~~~~~~~~~~~~~~~-~~~~-~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv  160 (400)
T PRK08013         83 VWDKDSFGRIAFDDQ-SMGY-SHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLV  160 (400)
T ss_pred             EEeCCCCceEEEccc-ccCC-CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence              00   11222111 0011 11346799999999999999886 78999999999999989999999988999999999


Q ss_pred             EEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCCCc-eeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027          254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (546)
Q Consensus       254 V~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~~-~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~  329 (546)
                      |+|||.+|.||++++++..   +...+.+.. +....+... ....+.           +.+.++ .+|..++.  ...+
T Consensus       161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~~--~~~~  225 (400)
T PRK08013        161 VGADGANSWLRNKADIPLTFWDYQHHALVAT-IRTEEPHDAVARQVFH-----------GDGILA-FLPLSDPH--LCSI  225 (400)
T ss_pred             EEeCCCCcHHHHHcCCCccccccCcEEEEEE-EeccCCCCCEEEEEEc-----------CCCCEE-EEECCCCC--eEEE
Confidence            9999999999999987643   223333221 111111111 111111           123444 45665431  2222


Q ss_pred             EEEccCCCCC---CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 009027          330 MFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (546)
Q Consensus       330 l~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~  406 (546)
                      .+........   .....++.+.+...++.    .++..++... ...+|+......+++.+||+|+|||||.+||++||
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~l~~~~~~~~-~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQ  300 (400)
T PRK08013        226 VWSLSPEEAQRMQQAPEEEFNRALAIAFDN----RLGLCELESE-RQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQ  300 (400)
T ss_pred             EEEcCHHHHHHHHcCCHHHHHHHHHHHHhH----hhCceEecCC-ccEEecceeecccccCCcEEEEechhhcCCccccC
Confidence            2222110000   01112222222211211    0112222111 12355554455678899999999999999999999


Q ss_pred             cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |+|++++|+..|++.|..++..+. +......|+.|+
T Consensus       301 G~n~gi~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~  336 (400)
T PRK08013        301 GVNLGFMDAAELIAELRRLHRQGK-DIGQHLYLRRYE  336 (400)
T ss_pred             chhhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHH
Confidence            999999999999999988876553 222334578999

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=2.5e-32  Score=288.66  Aligned_cols=327  Identities=14%  Similarity=0.170  Sum_probs=203.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-----CcccccCCHHHHHHHHHcCCCCcccchhhhhhccCC--
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-----REQEWNISRKELLELVESGILVEDDIDEATATKFNP--  181 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~-----~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~--  181 (546)
                      .+||+||||| +|+++|+.|++.|++|+|+|+.+++.     ..+...+++++++.|+++|+|+.  +++. ...+..  
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~--l~~~-~~~~~~~~   77 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEE--LEKF-VAEMQDIY   77 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHH--HHhh-cCCCcEEE
Confidence            3799999965 69999999999999999999875432     24677899999999999999964  2221 111100  


Q ss_pred             -------CcccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEE
Q 009027          182 -------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (546)
Q Consensus       182 -------~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlV  253 (546)
                             ..+.|..    .....+++.+++..|++.|.+++.+.+ ++++.+++++++..+++++.|+++++ +++|++|
T Consensus        78 ~~~~~g~~~~~~~~----~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlv  152 (374)
T PRK06617         78 VVDNKASEILDLRN----DADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLL  152 (374)
T ss_pred             EEECCCceEEEecC----CCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEE
Confidence                   0111211    011235688999999999999998886 68999999999999999999999766 8999999


Q ss_pred             EEecCCChHHHHHhcCCC--CCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027          254 IDAMGNFSPVVKQIRSGR--KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (546)
Q Consensus       254 V~ADG~~S~vr~ql~~~~--~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~  331 (546)
                      |+|||.+|.+|++++...  ...+.+.+........+.+...+.+...+           .+| .+|..++   ....++
T Consensus       153 IgADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~~~~~~~~~~~~g-----------~~~-~lPl~~~---~~~~~v  217 (374)
T PRK06617        153 IICDGANSKVRSHYFANEIEKPYQTALTFNIKHEKPHENCAMEHFLPLG-----------PFA-LLPLKDQ---YASSVI  217 (374)
T ss_pred             EEeCCCCchhHHhcCCCcccccCCeEEEEEEeccCCCCCEEEEEecCCC-----------CEE-EeECCCC---CeEEEE
Confidence            999999999999987653  11133433221111111111233332222           244 4566543   211222


Q ss_pred             EccCCCC-----C-C-ccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCC
Q 009027          332 TYIDPQA-----G-S-PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS  404 (546)
Q Consensus       332 ~~~~~~~-----~-~-~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pls  404 (546)
                      .......     . . ..+.++++.++.   .   . ++.+.... ....+|++.....+++.+||+|+|||||.+||++
T Consensus       218 w~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~-~~~i~~~~-~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~  289 (374)
T PRK06617        218 WSTSSDQAALIVNLPVEEVRFLTQRNAG---N---S-LGKITIDS-EISSFPLKARIANRYFHNRIVLIADTAHTVHPLA  289 (374)
T ss_pred             EeCCHHHHHHHHcCCHHHHHHHHHHhhc---h---h-cCceeecc-ceeEEEeeeeeccceecCCEEEEEcccccCCCCc
Confidence            2111000     0 0 111222222111   1   0 12222111 1245787766566888999999999999999999


Q ss_pred             CCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh--hcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHH
Q 009027          405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM--KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIF  482 (546)
Q Consensus       405 g~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye--~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~  482 (546)
                      |||+|++++|+..|++.|.    .   .    ..|+.|+  +.++......+++         . +...+.+.......+
T Consensus       290 GQG~n~gl~Da~~La~~L~----~---~----~~L~~Ye~~R~~~~~~~~~~t~---------~-l~~~f~~~~~~~~~~  348 (374)
T PRK06617        290 GQGLNQGIKDIEILSMIVS----N---N----GTLQEYQKLRQEDNFIMYKLTD---------E-LNNIFSNYSKNLRCL  348 (374)
T ss_pred             cccHHHHHHHHHHHHHHHc----C---c----chHHHHHHHHhHHHHHHHHHHH---------H-HHHHHcCCchHHHHH
Confidence            9999999999999987762    1   1    3568899  2222222222222         2 333345555566666


Q ss_pred             HhcChh
Q 009027          483 KQVGIP  488 (546)
Q Consensus       483 ~~~g~~  488 (546)
                      |..++.
T Consensus       349 R~~~l~  354 (374)
T PRK06617        349 RQIGFK  354 (374)
T ss_pred             HHHHHH
Confidence            665553

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=9.1e-32  Score=285.81  Aligned_cols=339  Identities=18%  Similarity=0.177  Sum_probs=213.0

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCCcccchhhhhhccC--
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKFN--  180 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~------~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~--  180 (546)
                      .+||+|||| ++|+++|+.|+++|++|+||||++.++.      .+...+++.+++.|+.+|+|+..  ++.....+.  
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~--~~~~~~~~~~~   83 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAV--RAARAQPYRRM   83 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhh--hHhhCCcccEE
Confidence            689999996 5699999999999999999999876542      24457999999999999999752  211011111  


Q ss_pred             -------CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEE
Q 009027          181 -------PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (546)
Q Consensus       181 -------~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlV  253 (546)
                             ...+.|... .+ .+..+++.+++..|.+.|.+++.+.|++++.+++++++..++++++|++++|++++|++|
T Consensus        84 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v  161 (392)
T PRK08773         84 RVWDAGGGGELGFDAD-TL-GREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA  161 (392)
T ss_pred             EEEeCCCCceEEechh-cc-CCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence                   011222111 01 112345779999999999999999999999999999999988999999888889999999


Q ss_pred             EEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCCC-ceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027          254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (546)
Q Consensus       254 V~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~-~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~  329 (546)
                      |+|||.+|.+++++++..+   +...+.+. .+....+.. ...+.+...           +.+. .+|..++   ...+
T Consensus       162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~-----------g~~~-~lP~~~~---~~~~  225 (392)
T PRK08773        162 IAADGAASTLRELAGLPVSRHDYAQRGVVA-FVDTEHPHQATAWQRFLPT-----------GPLA-LLPFADG---RSSI  225 (392)
T ss_pred             EEecCCCchHHHhhcCCceEEEeccEEEEE-EEEccCCCCCEEEEEeCCC-----------CcEE-EEECCCC---ceEE
Confidence            9999999999999876532   11112111 111011111 111122111           1121 3455433   2222


Q ss_pred             EEEccCCCC------CCc-cHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCC
Q 009027          330 MFTYIDPQA------GSP-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP  402 (546)
Q Consensus       330 l~~~~~~~~------~~~-~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~P  402 (546)
                      ++.+.....      ... ..+++.+.|...++.+..        ... ...+|++.....++..+|++|+|||||.+||
T Consensus       226 ~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P  296 (392)
T PRK08773        226 VWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRV--------ASP-RTAFPLRRQLVQQYVSGRVLTLGDAAHVVHP  296 (392)
T ss_pred             EEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEe--------cCC-ccEeechhhhhhhhcCCcEEEEechhhcCCC
Confidence            222211000      001 112222233222222211        111 1245666555567889999999999999999


Q ss_pred             CCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhh--cCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHH
Q 009027          403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMK--LGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPS  480 (546)
Q Consensus       403 lsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~--l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~  480 (546)
                      ++|||+|++++|+..|++.|.+++..+. +..+...|++|++  ..+........|          .+..++.+......
T Consensus       297 ~~GqG~n~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~y~~~R~~~~~~~~~~~~----------~l~~~f~~~~~~~~  365 (392)
T PRK08773        297 LAGQGVNLGLRDVAALQQLVRQAHARRA-DWAAPHRLQRWARTRRSDNTVAAYGFD----------AINRVFSNDEMHLT  365 (392)
T ss_pred             chhchhhhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHcCCChHHH
Confidence            9999999999999999999999886553 3344567899992  222222222222          34445676666666


Q ss_pred             HHHhcChh
Q 009027          481 IFKQVGIP  488 (546)
Q Consensus       481 ~~~~~g~~  488 (546)
                      .+|.+++.
T Consensus       366 ~~r~~~l~  373 (392)
T PRK08773        366 LLRGSVLG  373 (392)
T ss_pred             HHHHHHHH
Confidence            66666554

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=100.00  E-value=9.6e-30  Score=274.69  Aligned_cols=348  Identities=16%  Similarity=0.128  Sum_probs=209.6

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .+|||+|||| |+|+++|..||++|++|+|+||+..........|+..   .|+++|+++.     .+........+...
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~---~l~~lgl~~~-----~~~~~i~~~~~~~p  109 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLC---MVGEFDLPLD-----IIDRKVTKMKMISP  109 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---HHhhhcCcHH-----HHHHHhhhheEecC
Confidence            4699999996 5799999999999999999999864322223457643   4566787532     11111111111100


Q ss_pred             CCccccc-----cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe---CCeEEEEEcC-------C--cEEEc
Q 009027          188 GKGEIWV-----EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAE-------G--KILSS  250 (546)
Q Consensus       188 ~~~~l~~-----~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dgv~V~~~~-------g--~~i~A  250 (546)
                      +...+..     +......++|..|++.|.++|.++|++++.+ +++++...   ++.+.|++.+       |  .+++|
T Consensus       110 ~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a  188 (450)
T PLN00093        110 SNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEV  188 (450)
T ss_pred             CceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEe
Confidence            1111111     1111235899999999999999999999876 57777642   2456666532       3  48999


Q ss_pred             CEEEEecCCChHHHHHhcCCCCCCeeeeEEEEEeeccC------CCceeeeeccCCcccccCCCCcceEEEEecCCCCCc
Q 009027          251 HLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFK------DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPL  324 (546)
Q Consensus       251 rlVV~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~~~------~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~  324 (546)
                      |+||+|||.+|.++++++.+..  ..+..+..... .+      +....++++... +.+     ..|.| +||.++.  
T Consensus       189 ~~VIgADG~~S~vrr~lg~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~-~~p-----~~Y~W-ifP~g~~--  256 (450)
T PLN00093        189 DAVIGADGANSRVAKDIDAGDY--DYAIAFQERIK-IPDDKMEYYEDLAEMYVGDD-VSP-----DFYGW-VFPKCDH--  256 (450)
T ss_pred             CEEEEcCCcchHHHHHhCCCCc--ceeEEEEEEEe-CChhhccccCCeEEEEeCCC-CCC-----CceEE-EEECCCc--
Confidence            9999999999999999987532  22221111111 11      112334443322 222     47889 8999853  


Q ss_pred             cceEEEEEccCCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCC
Q 009027          325 DRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS  404 (546)
Q Consensus       325 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pls  404 (546)
                       ..+.+.....    ..++.++++.+...++..    +...++.+...+.+|..  ...++..+|++|||||||+++|++
T Consensus       257 -~~VG~g~~~~----~~~~~~~~~~l~~~~~~~----l~~~~~~~~~~~~ip~~--~~~~~~~~~vlLvGDAAg~v~P~t  325 (450)
T PLN00093        257 -VAVGTGTVVN----KPAIKKYQRATRNRAKDK----IAGGKIIRVEAHPIPEH--PRPRRVRGRVALVGDAAGYVTKCS  325 (450)
T ss_pred             -EEEEEEEccC----CCChHHHHHHHHHHhhhh----cCCCeEEEEEEEEcccc--cccceeCCCcEEEeccccCCCccc
Confidence             3444433221    224444444333222210    11122233334456663  234667899999999999999999


Q ss_pred             CCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHh
Q 009027          405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ  484 (546)
Q Consensus       405 g~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~  484 (546)
                      |+|++.+++++..+++.|.++++.|.- ..+...|+.|++   ...+.|....    .....+.+.+.+++..++.++..
T Consensus       326 GeGI~~Am~sg~~AAe~i~~~~~~g~~-~~s~~~L~~Y~~---~~~~~~g~~~----~~~~~l~~~~~~~~~~~~~~~~~  397 (450)
T PLN00093        326 GEGIYFAAKSGRMCAEAIVEGSENGTR-MVDEADLREYLR---KWDKKYWPTY----KVLDILQKVFYRSNPAREAFVEM  397 (450)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhcCCC-cCCHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHcCCcHHHHHHHHH
Confidence            999999999999999999999976531 112345678983   2222332222    12233334444566777788887


Q ss_pred             cChhhHHHHHHH
Q 009027          485 VGIPVLVDWSGH  496 (546)
Q Consensus       485 ~g~~~~~~w~~~  496 (546)
                      ....++.+.+..
T Consensus       398 ~~~~~~~~~~~~  409 (450)
T PLN00093        398 CADEYVQKMTFD  409 (450)
T ss_pred             hhhhhHHHHhHH
Confidence            777766666554

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=6.7e-31  Score=283.43  Aligned_cols=349  Identities=17%  Similarity=0.162  Sum_probs=209.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHh----CCCeEEEEcCCCCCC-------------CcccccCCHHHHHHHHHcCCCCcccch
Q 009027          111 FDVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKG-------------REQEWNISRKELLELVESGILVEDDID  172 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~----~G~rVlLlEr~~~~~-------------~~r~~~Is~~~l~~L~~lGl~~~~~ie  172 (546)
                      |||+||||| +|+++|+.|++    +|++|+||||++.+.             ..|...|++.+++.|+.+|+|+..  .
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l--~   78 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHI--Q   78 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhh--h
Confidence            799999965 69999999998    899999999965333             135678999999999999999742  2


Q ss_pred             hhhhhcc------C---CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcC---CEEEeCceEEEEEEe------
Q 009027          173 EATATKF------N---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTY------  234 (546)
Q Consensus       173 ~~i~~~~------~---~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G---~~v~~~t~v~~i~~~------  234 (546)
                      +.....+      .   ...+.|....   ....+++.+++..|.+.|.+++.+.+   ++++.+++|+++...      
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~  155 (437)
T TIGR01989        79 SDRIQPFGRMQVWDGCSLALIRFDRDN---GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPND  155 (437)
T ss_pred             hhcCCceeeEEEecCCCCceEEeecCC---CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccC
Confidence            1100000      0   0112222111   11234678999999999999998875   799999999999752      


Q ss_pred             -CCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCC
Q 009027          235 -ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSE  309 (546)
Q Consensus       235 -~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~  309 (546)
                       +++++|++.+|++++|++||+|||.+|.+|+++++...   +.+.+.+........+ .+...+.+...          
T Consensus       156 ~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~----------  225 (437)
T TIGR01989       156 NSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPT----------  225 (437)
T ss_pred             CCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCC----------
Confidence             56788999889999999999999999999999987642   3333332221111111 12222333222          


Q ss_pred             cceEEEEecCCCCCccceEEEEEccCCCCC---CccHHHHHHHHHHhC-------cc----------cc---cccc-Cc-
Q 009027          310 VQLFWEAFPAGSGPLDRTTYMFTYIDPQAG---SPKLEELLERYWDLM-------PE----------YQ---GVTL-DN-  364 (546)
Q Consensus       310 ~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~---~~~l~~l~~~~~~~l-------p~----------~~---~~~l-~~-  364 (546)
                       +.++ ..|..++   ....++........   ..+.+++.+...+.+       |.          +.   ...+ +. 
T Consensus       226 -g~~~-~lPl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~  300 (437)
T TIGR01989       226 -GPIA-LLPLPDN---NSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSK  300 (437)
T ss_pred             -CCEE-EeECCCC---CEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence             2233 3455443   22222222110000   001112211111111       00          00   0000 00 


Q ss_pred             ---------ceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhh
Q 009027          365 ---------LEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYS  435 (546)
Q Consensus       365 ---------~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~  435 (546)
                               ..........+|+....+.++..+|++|+|||||.+||++|||+|++++|+..|++.|..+++.+. +..+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~-~~~~  379 (437)
T TIGR01989       301 SCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGA-DIGS  379 (437)
T ss_pred             cccccCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCC-ChhH
Confidence                     000111113567765556678899999999999999999999999999999999999999887653 3333


Q ss_pred             HHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcChh
Q 009027          436 LSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIP  488 (546)
Q Consensus       436 l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g~~  488 (546)
                      ...|+.|++    .+++.....+   .+++. +...+.++......+|..++.
T Consensus       380 ~~~L~~Y~~----~R~~~~~~v~---~~t~~-l~~l~~~~~~~~~~~R~~~l~  424 (437)
T TIGR01989       380 ISSLKPYER----ERYAKNVVLL---GLVDK-LHKLYATDFPPVVALRTFGLN  424 (437)
T ss_pred             HHHHHHHHH----HHHHHHHHHH---HHHHH-HHHHHcCCccHHHHHHHHHHH
Confidence            456889992    2222222222   12222 223345666666666665543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-30  Score=277.74  Aligned_cols=342  Identities=16%  Similarity=0.069  Sum_probs=211.5

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CCcccccCCHHHHHHHHHcCCCCcccchhhhhhccC------
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQEWNISRKELLELVESGILVEDDIDEATATKFN------  180 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~-~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~------  180 (546)
                      .+|||+||||| +|+++|+.|+++|++|+|||+++.+ +..+...+++.+++.|+++|+|++  +.+.......      
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~--~~~~~~~~~~~~~~~~   82 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLER--FLELPHQKVRTLRFEI   82 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhH--HhhcccceeeeEEEEE
Confidence            36999999965 6999999999999999999998643 334566899999999999999864  2221100010      


Q ss_pred             CC----cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE---EEEcCCc-EEEcC
Q 009027          181 PN----RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSSH  251 (546)
Q Consensus       181 ~~----~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~---V~~~~g~-~i~Ar  251 (546)
                      .+    .+.|..   ...+..+.+.+++..+.+.|.+++.+. |++++++++++++..+++.+.   +...+|+ +++|+
T Consensus        83 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~  159 (407)
T PRK06185         83 GGRTVTLADFSR---LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRAD  159 (407)
T ss_pred             CCeEEEecchhh---cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeC
Confidence            00    011111   111122445688999999999998765 789999999999988877653   3334564 79999


Q ss_pred             EEEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCCC--ceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027          252 LIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDN--STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (546)
Q Consensus       252 lVV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~--~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~  326 (546)
                      +||+|||.+|.+|+++++..+   +.+.+..+.  ....+.+  ...+.+.           ..++++ .+|.. +   .
T Consensus       160 ~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~g~~~-llP~~-~---~  221 (407)
T PRK06185        160 LVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPREPDDPESLMGRFG-----------PGQGLI-MIDRG-D---Y  221 (407)
T ss_pred             EEEECCCCchHHHHHcCCCccccCCCceeEEEe--cCCCCCCCcccceEec-----------CCcEEE-EEcCC-C---e
Confidence            999999999999999987532   222221111  1100000  1111111           124444 45654 3   2


Q ss_pred             eEEEEEccCCCCC---CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCC
Q 009027          327 TTYMFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV  403 (546)
Q Consensus       327 ~~~l~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pl  403 (546)
                      ....+........   ..+.+++.+.+....|.+... ++.++.... ...+|+......+++.+|++|+|||||.+||+
T Consensus       222 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-l~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~  299 (407)
T PRK06185        222 WQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADR-VAELKSWDD-VKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPV  299 (407)
T ss_pred             EEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHH-HhhcCCccc-cEEEEEeccccccccCCCeEEEeccccccCcc
Confidence            2222222111111   123445555554555554331 222221111 12456655556678889999999999999999


Q ss_pred             CCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh--hcCchhhhHHHHhhhcchhHHHHHHHHHhhCCC--cHH
Q 009027          404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM--KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQ--IIP  479 (546)
Q Consensus       404 sg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye--~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~--~l~  479 (546)
                      +|||+|++++|+..|++.|.++++.++...   ..|+.|+  +..+......++|.          +..++.++.  .+.
T Consensus       300 ~GqG~nlgl~Da~~La~~l~~~~~~~~~~~---~~L~~Y~~~R~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  366 (407)
T PRK06185        300 GGVGINLAIQDAVAAANILAEPLRRGRVSD---RDLAAVQRRREFPTRVTQALQRR----------IQRRLLAPALAGRG  366 (407)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhccCCccH---HHHHHHHHHhhhHHHHHHHHHHH----------HHHhhccccccCcc
Confidence            999999999999999999999987664222   5678999  22222222233332          223345555  556


Q ss_pred             HHHHhcChh
Q 009027          480 SIFKQVGIP  488 (546)
Q Consensus       480 ~~~~~~g~~  488 (546)
                      .++|.+++.
T Consensus       367 ~~~R~~~l~  375 (407)
T PRK06185        367 PLGPPLLLR  375 (407)
T ss_pred             ccCCchHHH
Confidence            666666654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.98  E-value=2.1e-30  Score=276.48  Aligned_cols=344  Identities=13%  Similarity=0.111  Sum_probs=208.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC---------CCcccccCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK---------GREQEWNISRKELLELVESGILVEDDIDEATATKF  179 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~---------~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~  179 (546)
                      .|||+||||| +|+++|+.|+++|++|+|+|+++.+         ...+...+++++++.|+.+|+|+.  +.+.....+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~--l~~~~~~~~   79 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDG--IAARRASPY   79 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhh--hhHhhCccc
Confidence            4899999965 6999999999999999999998731         123456799999999999999864  221100000


Q ss_pred             ------CC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEc
Q 009027          180 ------NP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSS  250 (546)
Q Consensus       180 ------~~---~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~A  250 (546)
                            ..   ..+.|... .... ..+++.+++..+.+.|.+++.+.|++++.+++++++..++++++|++++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a  157 (405)
T PRK05714         80 SEMQVWDGSGTGQIHFSAA-SVHA-EVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRA  157 (405)
T ss_pred             eeEEEEcCCCCceEEeccc-ccCC-CccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence                  00   11122210 1111 2245678999999999999988899999999999999999999999888889999


Q ss_pred             CEEEEecCCChHHHHHhcCCCCC---CeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027          251 HLIIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (546)
Q Consensus       251 rlVV~ADG~~S~vr~ql~~~~~~---~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~  326 (546)
                      ++||+|||.+|.+|+++++..+.   .+.+.+. ......+ .......+..           .+.++ .+|..++....
T Consensus       158 ~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~g~~~-~~P~~~~~~~~  224 (405)
T PRK05714        158 PLVVAADGANSAVRRLAGCATREWDYLHHAIVT-SVRCSEPHRATAWQRFTD-----------DGPLA-FLPLERDGDEH  224 (405)
T ss_pred             CEEEEecCCCchhHHhcCCCcccccCCceEEEE-EEEcCCCCCCEEEEEcCC-----------CCCeE-EeeCCCCCCCC
Confidence            99999999999999999765322   2222111 1100000 1111111111           12233 46654221111


Q ss_pred             eEEEEEccCCCC-C---CccH----HHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCC
Q 009027          327 TTYMFTYIDPQA-G---SPKL----EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG  398 (546)
Q Consensus       327 ~~~l~~~~~~~~-~---~~~l----~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~  398 (546)
                      ...++....... .   ..+.    +++.+.|...++++...       ..  ...+|++.....++..+|++|+|||||
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~--~~~~~l~~~~~~~~~~~rv~LlGDAAH  295 (405)
T PRK05714        225 WCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSA-------DP--RLCVPLRQRHAKRYVEPGLALIGDAAH  295 (405)
T ss_pred             eEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceec-------CC--ccEEecceeehhhhccCCEEEEEeccc
Confidence            122221111100 0   0111    22222222222222111       11  124566655556788899999999999


Q ss_pred             CCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcH
Q 009027          399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQII  478 (546)
Q Consensus       399 ~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l  478 (546)
                      .+||++|||.|++++|+..|++.|..++..+. +......|+.|++    .+++.....+   ..++.+. .++.++...
T Consensus       296 ~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~-~~~~~~~L~~Ye~----~R~~~~~~~~---~~~~~~~-~~~~~~~~~  366 (405)
T PRK05714        296 TIHPLAGQGVNLGFLDAAVLAEVLLHAAERGE-RLADVRVLSRFER----RRMPHNLALM---AAMEGFE-RLFQADPLP  366 (405)
T ss_pred             cCCCcccccccHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHH----HHHHHHHHHH---HHHHHHH-HHHCCCchH
Confidence            99999999999999999999999988876553 2222357889992    1222222211   2233223 334666666


Q ss_pred             HHHHHhcChh
Q 009027          479 PSIFKQVGIP  488 (546)
Q Consensus       479 ~~~~~~~g~~  488 (546)
                      ...+|..+++
T Consensus       367 ~~~~R~~~l~  376 (405)
T PRK05714        367 LRWLRNTGLK  376 (405)
T ss_pred             HHHHHHHHHH
Confidence            6666766554

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.98  E-value=1.4e-30  Score=276.21  Aligned_cols=344  Identities=19%  Similarity=0.188  Sum_probs=211.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhh--cc-C-CCc-
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT--KF-N-PNR-  183 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~--~~-~-~~~-  183 (546)
                      .||||||||| +|+++|+.|+++|++|+||||.+.+...+.+.+++.+++.|+++|+|+...-......  .+ . ... 
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~   86 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL   86 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence            5899999965 6999999999999999999999876666778899999999999999864211000000  00 0 000 


Q ss_pred             -----ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          184 -----CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       184 -----v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                           ..|.. .. .....+++.+++..+.+.|.+++.+.++..+.+++|+++..+++++.|++++|++++||+||+|||
T Consensus        87 ~~~~~~~~~~-~~-~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG  164 (388)
T PRK07494         87 IRAPEVRFRA-AE-IGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADG  164 (388)
T ss_pred             CCCceEEEcH-Hh-cCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecC
Confidence                 11110 00 011234677999999999999998876545889999999999999999988888999999999999


Q ss_pred             CChHHHHHhcCCC---CCCeeeeEEEEEeeccCCCc-eeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEcc
Q 009027          259 NFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI  334 (546)
Q Consensus       259 ~~S~vr~ql~~~~---~~~~~~~~vg~~~~~~~~~~-~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~  334 (546)
                      .+|.+|+++++..   .+.+.+.++.. ....+... ..+++..           .+.++ .+|..++   ...+++...
T Consensus       165 ~~S~vr~~~g~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~-----------~g~~~-~~Pl~~~---~~~~v~~~~  228 (388)
T PRK07494        165 RNSPVREAAGIGVRTWSYPQKALVLNF-THSRPHQNVSTEFHTE-----------GGPFT-QVPLPGR---RSSLVWVVR  228 (388)
T ss_pred             CCchhHHhcCCCceecCCCCEEEEEEE-eccCCCCCEEEEEeCC-----------CCcEE-EEECCCC---cEEEEEECC
Confidence            9999999987653   23333432221 11122111 1222221           12233 4666543   233332221


Q ss_pred             CCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhh
Q 009027          335 DPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL  411 (546)
Q Consensus       335 ~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~  411 (546)
                      ....   ...+.+++.+.+...++.+    ++.++... ....+|+....+.++..+|++|+|||||.+||++|||+|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~-~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~  303 (388)
T PRK07494        229 PAEAERLLALSDAALSAAIEERMQSM----LGKLTLEP-GRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLG  303 (388)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhh----cCCeEEcc-CCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchh
Confidence            1000   0112233333332323222    11221111 11356776555557788999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcChh
Q 009027          412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIP  488 (546)
Q Consensus       412 lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g~~  488 (546)
                      ++|+..|++.|.....    +......|+.|++.    +++-....+   .... .+...+.++......+|.+++.
T Consensus       304 l~Da~~La~~L~~~~~----~~~~~~~L~~Y~~~----R~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~R~~~l~  368 (388)
T PRK07494        304 LRDVATLVEIVEDRPE----DPGSAAVLAAYDRA----RRPDILSRT---ASVD-LLNRSLLSDFLPVQDLRAAGLH  368 (388)
T ss_pred             HHHHHHHHHHHHhcCC----CcchHHHHHHHHHH----HHHHHHHHH---HHHH-HHHHHHcCCchHHHHHHHHHHH
Confidence            9999999999876321    11234567899921    111111111   1111 2334456666666666666554

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.98  E-value=1.8e-30  Score=275.48  Aligned_cols=302  Identities=17%  Similarity=0.194  Sum_probs=187.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-------CcccccCCHHHHHHHHHcCCCCcccchhhhhhccC-
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-------REQEWNISRKELLELVESGILVEDDIDEATATKFN-  180 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~-------~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~-  180 (546)
                      .|||+||||| +|+++|+.|+++|++|+|+|+.+...       ..++..|++++++.|+.+|+|+..  .+.....+. 
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~--~~~~~~~~~~   80 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSI--VAMRVCPYKR   80 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhh--hHhhCCccce
Confidence            4899999965 69999999999999999999875321       124457999999999999999642  111000010 


Q ss_pred             -------CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCE
Q 009027          181 -------PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (546)
Q Consensus       181 -------~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~Arl  252 (546)
                             .....|.. ..+.. ..+++.+++..|...|.+++.+. |++++.++++++++.++++++|++++|++++|++
T Consensus        81 ~~~~~~~~~~~~~~~-~~~~~-~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l  158 (384)
T PRK08849         81 LETWEHPECRTRFHS-DELNL-DQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW  158 (384)
T ss_pred             EEEEeCCCceEEecc-cccCC-CccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence                   01111111 01111 12356677778999999988665 5799999999999999999999999999999999


Q ss_pred             EEEecCCChHHHHHhcCCC---CCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027          253 IIDAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (546)
Q Consensus       253 VV~ADG~~S~vr~ql~~~~---~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~  329 (546)
                      ||+|||.+|++|++++++.   .+.+.+.++.......+.+...+.+...++..            ..|..++   ...+
T Consensus       159 vIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~------------~~pl~~~---~~~~  223 (384)
T PRK08849        159 VIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRS------------FLPLCGN---QGSL  223 (384)
T ss_pred             EEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEE------------EeEcCCC---ceEE
Confidence            9999999999999998753   23333332221111111111122222222211            1233322   1111


Q ss_pred             EEEccCCCC----CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCC
Q 009027          330 MFTYIDPQA----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF  405 (546)
Q Consensus       330 l~~~~~~~~----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg  405 (546)
                      ++ +.....    ...+.+++.+.+.+.+|..    +..+...  ....+|+......+++.+|++|+|||||.++|+.|
T Consensus       224 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~G  296 (384)
T PRK08849        224 VW-YDSPKRIKQLSAMNPEQLRSEILRHFPAE----LGEIKVL--QHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAG  296 (384)
T ss_pred             EE-ECCHHHHHHHHcCCHHHHHHHHHHHhhhh----hCcEEec--cceEeeccccccchhccCCEEEEEcccccCCCCcc
Confidence            11 111000    0012233333333333321    1222211  22456766545567888999999999999999999


Q ss_pred             CcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       406 ~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ||+|++++|+..|++.+..   .+.   ..-..|+.||
T Consensus       297 QG~n~al~Da~~L~~~l~~---~~~---~~~~~L~~Ye  328 (384)
T PRK08849        297 QGVNLGFKDVDVLLAETEK---QGV---LNDASFARYE  328 (384)
T ss_pred             chHhHHHHHHHHHHHHHHh---cCC---CcHHHHHHHH
Confidence            9999999999999877642   221   1234678999

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.98  E-value=1.7e-29  Score=269.12  Aligned_cols=310  Identities=23%  Similarity=0.291  Sum_probs=207.3

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccc--ccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~--~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      .+|||||||| |+|+++|+.||++|++|+|+||+..++.+.+  ..+++..++.+   ......+    +........+.
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l---~~~~~~~----i~~~v~~~~~~   74 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL---IPDFDEE----IERKVTGARIY   74 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHh---CCCcchh----hheeeeeeEEE
Confidence            3799999995 6799999999999999999999999987643  35777766555   2211111    22222222233


Q ss_pred             ccCCc-cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEcCEEEEecCCChHH
Q 009027          186 FEGKG-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       186 f~~~~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-g~~i~ArlVV~ADG~~S~v  263 (546)
                      +.+.. .+..+...++.|++..|+++|.++|.++|++++.+++++++..+++++++.+.. +.+++||+||+|||.+|.+
T Consensus        75 ~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l  154 (396)
T COG0644          75 FPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL  154 (396)
T ss_pred             ecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence            33211 122222347889999999999999999999999999999999999888776654 3689999999999999999


Q ss_pred             HHHhcCCCC-CCeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCc
Q 009027          264 VKQIRSGRK-PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP  341 (546)
Q Consensus       264 r~ql~~~~~-~~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~  341 (546)
                      ++.++.... ++.....+... ...+ +....+.+.......     ..+|.| +||.+++.  ...++..........+
T Consensus       155 ~~~lg~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~-----~~Gy~w-ifP~~~~~--~~VG~g~~~~~~~~~~  225 (396)
T COG0644         155 ARKLGLKDRKPEDYAIGVKEV-IEVPDDGDVEEFLYGPLDVG-----PGGYGW-IFPLGDGH--ANVGIGVLLDDPSLSP  225 (396)
T ss_pred             HHHhCCCCCChhheeEEeEEE-EecCCCCceEEEEecCCccC-----CCceEE-EEECCCce--EEEEEEEecCCcCCCc
Confidence            999987722 22222111111 1222 122223322211222     368889 89998752  4555554433211123


Q ss_pred             cHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHH
Q 009027          342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTG  421 (546)
Q Consensus       342 ~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~  421 (546)
                      .. +++++|....+. .....+ .+......+.+|.+.....+.+.+|+++|||||++++|++|+|+..++..+..+++.
T Consensus       226 ~~-~~l~~f~~~~~~-~~~~~~-~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~  302 (396)
T COG0644         226 FL-ELLERFKEHPAI-RKLLLG-GKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEA  302 (396)
T ss_pred             hH-HHHHHHHhCccc-chhccC-CceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHH
Confidence            44 788888765432 221111 233444456788875433337889999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCChhhHHHHhhhh
Q 009027          422 VYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       422 I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |.++++.+   .   +.|..|+
T Consensus       303 i~~~~~~~---~---~~l~~Y~  318 (396)
T COG0644         303 IAEALEGG---E---EALAEYE  318 (396)
T ss_pred             HHHHHHcC---h---hHHHHHH
Confidence            99999876   2   2334577

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.98  E-value=5.8e-30  Score=273.32  Aligned_cols=309  Identities=18%  Similarity=0.138  Sum_probs=193.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC-CCCC-----CcccccCCHHHHHHHHHcCCCCcccchhhhhhcc---
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKG-----REQEWNISRKELLELVESGILVEDDIDEATATKF---  179 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~-~~~~-----~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~---  179 (546)
                      .|||+||||| +|+++|+.|+++|++|+|+|++ +.+.     ..+...|++++++.|+++|+|++.  .+.....+   
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l--~~~~~~~~~~~   81 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGI--EARRAAPYIAM   81 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhh--hhhhCCcccEE
Confidence            5899999965 6999999999999999999996 3221     235567999999999999998652  21100000   


Q ss_pred             ---CC---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCE
Q 009027          180 ---NP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (546)
Q Consensus       180 ---~~---~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~Arl  252 (546)
                         ..   ..+.|... .... ..+++.+++..|.+.|.+++.+. |++++.+++|+++..+++++.|++++|++++|++
T Consensus        82 ~~~~~~~~~~~~~~~~-~~~~-~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~l  159 (405)
T PRK08850         82 EVWEQDSFARIEFDAE-SMAQ-PDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKL  159 (405)
T ss_pred             EEEeCCCCceEEEecc-ccCC-CccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCE
Confidence               11   11222211 1111 12456788999999999998775 6899999999999998999999998898999999


Q ss_pred             EEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCCCc-eeeeeccCCcccccCCCCcceEEEEecCCCCCccceE
Q 009027          253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT  328 (546)
Q Consensus       253 VV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~~-~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~  328 (546)
                      ||+|||.+|.+|++++++..   +.+.+.+. .+....+.+. ..+++..           .+.++ .+|..++  +...
T Consensus       160 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~-----------~g~~~-~lp~~~~--~~~~  224 (405)
T PRK08850        160 VVGADGANSWLRRQMDIPLTHWDYGHSALVA-NVRTVDPHNSVARQIFTP-----------QGPLA-FLPMSEP--NMSS  224 (405)
T ss_pred             EEEeCCCCChhHHHcCCCeeEEeeccEEEEE-EEEccCCCCCEEEEEEcC-----------CCceE-EEECCCC--CeEE
Confidence            99999999999999987643   22333222 1111111111 1122211           12222 3565533  1222


Q ss_pred             EEEEccCCCCC---CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCC
Q 009027          329 YMFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF  405 (546)
Q Consensus       329 ~l~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg  405 (546)
                      ..+........   ..+.+++.+...+.++..    +..++..... ..+|+......+++.+|++|+|||||.+||+.|
T Consensus       225 ~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~-~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~G  299 (405)
T PRK08850        225 IVWSTEPLRAEALLAMSDEQFNKALTAEFDNR----LGLCEVVGER-QAFPLKMRYARDFVRERVALVGDAAHTIHPLAG  299 (405)
T ss_pred             EEEECCHHHHHHHHcCCHHHHHHHHHHHHhhh----hCcEEEcccc-cEEecceeeccccccCcEEEEEhhhhcCCcccc
Confidence            22222110000   011122222222222110    1111111111 245665545567889999999999999999999


Q ss_pred             CcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       406 ~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ||+|++++|+..|++.|..+...+. +......|+.|+
T Consensus       300 QG~n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~  336 (405)
T PRK08850        300 QGVNLGLLDAASLAQEILALWQQGR-DIGLKRNLRGYE  336 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHH
Confidence            9999999999999999998876543 222345678999

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.97  E-value=5.6e-30  Score=272.59  Aligned_cols=307  Identities=21%  Similarity=0.218  Sum_probs=194.8

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCC--CeEEEEcCCCCCC---CcccccCCHHHHHHHHHcCCCCcccchhhhhh--cc-C
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKG--LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATAT--KF-N  180 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G--~rVlLlEr~~~~~---~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~--~~-~  180 (546)
                      .|||+|||| ++|+++|+.|+++|  ++|+|+||++...   ..+...|++++++.|+++|+++...-......  .+ .
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   80 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD   80 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence            389999996 56999999999995  9999999987643   23567899999999999999864210000000  00 0


Q ss_pred             --C------CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCE
Q 009027          181 --P------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (546)
Q Consensus       181 --~------~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~Arl  252 (546)
                        .      ..+.|.+.  ......+.+.|++..|.+.|.+++.+.|++++.+++|+++..+++++.|++++|.+++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~  158 (403)
T PRK07333         81 SRTSDPVRPVFLTFEGE--VEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL  158 (403)
T ss_pred             CCCCCCCccceEEeccc--ccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence              0      00111110  0011223457899999999999999999999999999999998999999988888999999


Q ss_pred             EEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027          253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (546)
Q Consensus       253 VV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~  329 (546)
                      ||+|||.+|.+++++++...   +...+.++. .....+........+     .     ..+++| .+|..++   ...+
T Consensus       159 vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~-----~~g~~~-~~Pl~~~---~~~~  223 (403)
T PRK07333        159 LVAADGARSKLRELAGIKTVGWDYGQSGIVCT-VEHERPHGGRAEEHF-----L-----PAGPFA-ILPLKGN---RSSL  223 (403)
T ss_pred             EEEcCCCChHHHHHcCCCcccccCCCEEEEEE-EEcCCCCCCEEEEEe-----C-----CCCceE-EeECCCC---CeEE
Confidence            99999999999999876532   222232211 111111111111111     0     134555 6788765   3333


Q ss_pred             EEEccCCC-----CCC-c-cHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCC
Q 009027          330 MFTYIDPQ-----AGS-P-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP  402 (546)
Q Consensus       330 l~~~~~~~-----~~~-~-~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~P  402 (546)
                      .+......     ... . ...++.+.|...++.        +..... ...+|.......++..+||+|||||||.++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P  294 (403)
T PRK07333        224 VWTERTADAERLVALDDLVFEAELEQRFGHRLGE--------LKVLGK-RRAFPLGLTLARSFVAPRFALVGDAAHGIHP  294 (403)
T ss_pred             EEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCc--------eEeccC-ccEeechhhhhhhccCCCEEEEechhhcCCC
Confidence            33221100     000 0 112222222222221        111111 1134544333456788999999999999999


Q ss_pred             CCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       403 lsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ++|||+|++++|+..|++.|..+++.+. +......|+.|+
T Consensus       295 ~~GqG~n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Ye  334 (403)
T PRK07333        295 IAGQGLNLGLKDVAALAEVVVEAARLGL-DIGSLDVLERYQ  334 (403)
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHH
Confidence            9999999999999999999998886432 222345678999

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.97  E-value=4.5e-29  Score=265.14  Aligned_cols=340  Identities=16%  Similarity=0.136  Sum_probs=214.8

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC-CCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERN-TLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~-~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      |||||||| |+|+++|..||++|++|+|+||+ +.+. ...+.|++.   .|+++|+.++     .+...+....+....
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~-~cg~~i~~~---~l~~l~i~~~-----~~~~~~~~~~~~~~~   71 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIK-PCGGAIPPC---LIEEFDIPDS-----LIDRRVTQMRMISPS   71 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcC-cCcCCcCHh---hhhhcCCchH-----HHhhhcceeEEEcCC
Confidence            79999995 57999999999999999999998 3222 234578765   3566677532     222222111111111


Q ss_pred             Cccc--cccccccc--eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC------C--cEEEcCEEEEe
Q 009027          189 KGEI--WVEDILNL--GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE------G--KILSSHLIIDA  256 (546)
Q Consensus       189 ~~~l--~~~~~l~~--~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~------g--~~i~ArlVV~A  256 (546)
                      +..+  ..+...++  .+++..|++.|.++|.++|++++.+ +|+++..+++++.|++.+      +  .+++|++||+|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~A  150 (388)
T TIGR02023        72 RVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGA  150 (388)
T ss_pred             CceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEEC
Confidence            1111  11111122  5899999999999999999999765 699998888888887653      2  37999999999


Q ss_pred             cCCChHHHHHhcCCCCCCeeeeEEEEEeeccC------CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEE
Q 009027          257 MGNFSPVVKQIRSGRKPDGVCLVVGSCARGFK------DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM  330 (546)
Q Consensus       257 DG~~S~vr~ql~~~~~~~~~~~~vg~~~~~~~------~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l  330 (546)
                      ||.+|.++++++.+.+.. ....+..... .+      +.+..++++. .++.+     ..|.| +||.++.   ....+
T Consensus       151 dG~~S~v~r~lg~~~~~~-~~~a~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~p-----~~y~w-v~P~~~~---~~vg~  218 (388)
T TIGR02023       151 DGANSPVAKELGLPKNLP-RVIAYQERIK-LPDDKMAYYEELADVYYG-GEVSP-----DFYGW-VFPKGDH---IAVGT  218 (388)
T ss_pred             CCCCcHHHHHcCCCCCCc-EEEEEEEEec-CCchhcccCCCeEEEEEC-CCcCC-----CceEE-EeeCCCe---eEEeE
Confidence            999999999998764322 1111111110 11      1122233332 12222     46889 8998753   33333


Q ss_pred             EEccCCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027          331 FTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS  410 (546)
Q Consensus       331 ~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~  410 (546)
                      ....    ...+.+++++.+.+.++ +.     ..+..+...+.+|..  ...++..+|+++||||||+++|++|+|++.
T Consensus       219 ~~~~----~~~~~~~~~~~l~~~~~-~~-----~~~~~~~~~~~ip~~--~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~  286 (388)
T TIGR02023       219 GTGT----HGFDAKQLQANLRRRAG-LD-----GGQTIRREAAPIPMK--PRPRWDFGRAMLVGDAAGLVTPASGEGIYF  286 (388)
T ss_pred             EECC----CCCCHHHHHHHHHHhhC-CC-----CceEeeeeeEecccc--ccccccCCCEEEEeccccCcCCcccccHHH
Confidence            3221    12245566665555432 11     111122233456663  223566799999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcChhhH
Q 009027          411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVL  490 (546)
Q Consensus       411 ~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g~~~~  490 (546)
                      +++++..+++.|.++++.+.     ...|+.|++   ...+.|....    ...+.+-+.+..++..++.++..+...++
T Consensus       287 A~~sg~~aa~~i~~~l~~~~-----~~~L~~Y~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (388)
T TIGR02023       287 AMKSGQMAAQAIAEYLQNGD-----ATDLRHYER---KFMKLYGTTF----RVLRVLQMVYYRSDRRREVFVEMCRDKDV  354 (388)
T ss_pred             HHHHHHHHHHHHHHHHhcCC-----HHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHccCHHHHHHHHHHhccccH
Confidence            99999999999999997652     344678993   2223333332    12333444455788889999999888887


Q ss_pred             HHHHHH
Q 009027          491 VDWSGH  496 (546)
Q Consensus       491 ~~w~~~  496 (546)
                      .+.+..
T Consensus       355 ~~~~~~  360 (388)
T TIGR02023       355 QRLTFD  360 (388)
T ss_pred             HHhhHH
Confidence            776665

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN02463 lycopene beta cyclase

Probab=99.97  E-value=4.8e-29  Score=268.42  Aligned_cols=365  Identities=16%  Similarity=0.157  Sum_probs=242.7

Q ss_pred             CCCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          107 AVGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       107 ~~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      ....|||+|||| ++|+++|+.|+++|++|+|||+++....++.|.++..   .++++|+.+      ++...+....+.
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~---~l~~lgl~~------~l~~~w~~~~v~   95 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVD---EFEALGLLD------CLDTTWPGAVVY   95 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHH---HHHHCCcHH------HHHhhCCCcEEE
Confidence            344799999995 5799999999999999999999875444444555433   466667632      222333322333


Q ss_pred             ccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHHH
Q 009027          186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK  265 (546)
Q Consensus       186 f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~  265 (546)
                      +...........+ ..|++..|++.|.+++.+.|++++ .++|+++...++++.|++++|.+++|++||+|||.+|++.+
T Consensus        96 ~~~~~~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~  173 (447)
T PLN02463         96 IDDGKKKDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQ  173 (447)
T ss_pred             EeCCCCccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccC
Confidence            3221111111112 348999999999999998999986 57999999988899999988889999999999999998764


Q ss_pred             HhcCCCCCCeeeeEEEEEeeccCCC--cee-eeeccCCcccc--------cCCCCcceEEEEecCCCCCccceEEEEEcc
Q 009027          266 QIRSGRKPDGVCLVVGSCARGFKDN--STS-DVIYSSSSVKK--------VGDSEVQLFWEAFPAGSGPLDRTTYMFTYI  334 (546)
Q Consensus       266 ql~~~~~~~~~~~~vg~~~~~~~~~--~~~-~i~~~~~~i~~--------~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~  334 (546)
                      . .....+ ......+...+ ++.+  +.. .+++++.....        ....-.++.| ++|.+++   .  +++...
T Consensus       174 ~-~~~~~~-g~Q~a~Gi~~e-v~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY-~~P~~~~---~--~~vEeT  244 (447)
T PLN02463        174 Y-DKPFNP-GYQVAYGILAE-VDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLY-AMPFSSN---R--IFLEET  244 (447)
T ss_pred             C-CCCCCc-cceeeeeEEee-cCCCCcccccchhhhcChhhccccchhhhccCCCCceEE-EEecCCC---e--EEEEee
Confidence            2 111111 11111122221 1100  111 11222111100        0000135677 8898865   1  221111


Q ss_pred             ----CCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027          335 ----DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS  410 (546)
Q Consensus       335 ----~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~  410 (546)
                          .+......+++.+.++++.++      +...++.+.+.+.||....  .+...+|+++|||||+++||.||+||..
T Consensus       245 ~l~s~~~~~~~~lk~~L~~~l~~~G------i~~~~i~~~E~~~IPmg~~--~~~~~~~~~~~G~aag~v~p~tG~~i~~  316 (447)
T PLN02463        245 SLVARPGLPMDDIQERMVARLRHLG------IKVKSVEEDEKCVIPMGGP--LPVIPQRVLGIGGTAGMVHPSTGYMVAR  316 (447)
T ss_pred             eeecCCCCCHHHHHHHHHHHHHHCC------CCcceeeeeeeeEeeCCCC--CCCCCCCEEEecchhcCcCCCccccHHH
Confidence                111111256666666665432      1223345556788999643  3445789999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHhCCCCC--------hhhHHHHhhhh-------------------------------hcCchhhh
Q 009027          411 LTRHLGRLSTGVYEAVRGDFVD--------SYSLSLLNPYM-------------------------------KLGDPVLR  451 (546)
Q Consensus       411 ~lrd~~~Lae~I~~Al~~g~l~--------~~~l~~L~~Ye-------------------------------~l~~~~~~  451 (546)
                      +++.+..+++.|.++++++..+        ....+.|..|+                               +|+.+.++
T Consensus       317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~~~~~  396 (447)
T PLN02463        317 TLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWH  396 (447)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCHHHcc
Confidence            9999999999999999976541        21223343333                               88888999


Q ss_pred             HHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcChhhHHHHHHHHHH
Q 009027          452 PFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFM  499 (546)
Q Consensus       452 ~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g~~~~~~w~~~~~~  499 (546)
                      .|+.++++..++..+++.++...|.-+++-+-..|..+++++++++..
T Consensus       397 gfl~~~~~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~  444 (447)
T PLN02463        397 GFLSSRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQ  444 (447)
T ss_pred             ccccCCCChHHHHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999998753

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.97  E-value=7.8e-29  Score=264.21  Aligned_cols=346  Identities=16%  Similarity=0.129  Sum_probs=208.3

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      +||+|||| |+|+++|..||++|++|+||||+..+.......|+..   .|.++|+...     .+........+...+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~---~l~~~g~~~~-----~~~~~i~~~~~~~p~~   72 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLC---MVDEFALPRD-----IIDRRVTKMKMISPSN   72 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---hHhhccCchh-----HHHhhhceeEEecCCc
Confidence            69999995 5799999999999999999999865432223356653   4667787532     1211111111100011


Q ss_pred             cccc-----ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE---eCCeEEEEEc--C-----C--cEEEcCE
Q 009027          190 GEIW-----VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT---YENAAVLLLA--E-----G--KILSSHL  252 (546)
Q Consensus       190 ~~l~-----~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~---~~dgv~V~~~--~-----g--~~i~Arl  252 (546)
                      ..+.     .+......+++..|++.|.++|.++|++++.++ ++++..   .++.+.|++.  +     |  .+++|++
T Consensus        73 ~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~  151 (398)
T TIGR02028        73 IAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDA  151 (398)
T ss_pred             eEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCE
Confidence            0111     011111358999999999999999999998885 766643   2345555542  1     3  3799999


Q ss_pred             EEEecCCChHHHHHhcCCCCCCeeeeEEEEEeeccCC------CceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027          253 IIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKD------NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (546)
Q Consensus       253 VV~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~~~~------~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~  326 (546)
                      ||+|||.+|.++++++....  ..+..+....+ ++.      ....++++.. .+.|     .+|.| +||.++.   .
T Consensus       152 VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~-~~~p-----~gY~W-ifP~~~~---~  218 (398)
T TIGR02028       152 VIGADGANSRVAKEIDAGDY--SYAIAFQERIR-LPDEKMAYYDDLAEMYVGD-DVSP-----DFYGW-VFPKCDH---V  218 (398)
T ss_pred             EEECCCcchHHHHHhCCCCc--ceEEEEEEEee-CChhhcccCCCeEEEEeCC-CCCC-----CceEE-EEECCCe---E
Confidence            99999999999999976532  22222211221 221      1223333322 2222     46899 8998853   3


Q ss_pred             eEEEEEccCCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 009027          327 TTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (546)
Q Consensus       327 ~~~l~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~  406 (546)
                      .+.+....    ....+.++.+.+....+.  .  +...+......+.+|...  ..+++.+|++|||||||++||++|+
T Consensus       219 ~VG~g~~~----~~~~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~ip~~~--~~~~~~~~~llvGDAAg~v~P~tGe  288 (398)
T TIGR02028       219 AVGTGTVA----AKPEIKRLQSGIRARAAG--K--VAGGRIIRVEAHPIPEHP--RPRRVVGRVALVGDAAGYVTKCSGE  288 (398)
T ss_pred             EEEEEeCC----CCccHHHHHHhhhhhhhh--c--cCCCcEEEEEEEeccccc--cccEECCCEEEEEcCCCCCCccccc
Confidence            34443221    112344433322211111  0  111112223334567642  3466789999999999999999999


Q ss_pred             cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHhcC
Q 009027          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVG  486 (546)
Q Consensus       407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~~g  486 (546)
                      |++.+++++..+++.|.++++.|.-. .+...|+.|++   .+.+.|... +.   ....+.+.+.+++..++.++..+.
T Consensus       289 GI~~A~~sg~~aa~~i~~~~~~~~~~-~~~~~l~~Y~~---~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~  360 (398)
T TIGR02028       289 GIYFAAKSGRMCAEAIVEESRLGGAV-TEEGDLAGYLR---RWDKEYRPT-YR---VLDLLQRVFYRSNAGREAFVEMCA  360 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCCCc-CCHHHHHHHHH---HHHHHHHHH-HH---HHHHHHHHHcCCcHHHHHHHHHhc
Confidence            99999999999999999999876411 12334678993   122222222 22   223334445568889999999998


Q ss_pred             hhhHHHHHHH
Q 009027          487 IPVLVDWSGH  496 (546)
Q Consensus       487 ~~~~~~w~~~  496 (546)
                      ..++.+.+..
T Consensus       361 ~~~~~~~~~~  370 (398)
T TIGR02028       361 DEHVQKRTFD  370 (398)
T ss_pred             CcchhhhhHH
Confidence            8877776665

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.97  E-value=3e-29  Score=268.11  Aligned_cols=309  Identities=21%  Similarity=0.221  Sum_probs=189.2

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC---cccccCCHHHHHHHHHcCCCCcccchhhhhh----cc-
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATAT----KF-  179 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~---~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~----~~-  179 (546)
                      .+|||+|||| ++|+++|+.|+++|++|+|+||++.++.   .+...+++..++.|+++|++++.  ......    .+ 
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l--~~~~~~~~~~~~~   94 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKI--LPQIGKFRQIRLS   94 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhh--HhhcCCccEEEEE
Confidence            3699999996 5699999999999999999999987643   24568999999999999998652  211000    00 


Q ss_pred             --C-CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcC-C--cEEEcCE
Q 009027          180 --N-PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAE-G--KILSSHL  252 (546)
Q Consensus       180 --~-~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~-g--~~i~Arl  252 (546)
                        . ...+.|... .+.. ...++.+.+..|.+.|.+++.+. |++++.+++++++..+++++.|++.+ +  .+++||+
T Consensus        95 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adl  172 (415)
T PRK07364         95 DADYPGVVKFQPT-DLGT-EALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKL  172 (415)
T ss_pred             eCCCCceeeeccc-cCCC-CccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeE
Confidence              0 001111110 0111 11234455557888999988776 68999999999999888888888863 2  3699999


Q ss_pred             EEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceE
Q 009027          253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT  328 (546)
Q Consensus       253 VV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~  328 (546)
                      ||+|||.+|.+|++++....   +...|... .+....+ .+...+.+.           ..+++| .+|.+++   ...
T Consensus       173 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~---~~~  236 (415)
T PRK07364        173 VVAADGARSPIRQAAGIKTKGWKYWQSCVTA-TVKHEAPHNDIAYERFW-----------PSGPFA-ILPLPGN---RCQ  236 (415)
T ss_pred             EEEeCCCCchhHHHhCCCceeecCCCEEEEE-EEEccCCCCCEEEEEec-----------CCCCeE-EeECCCC---CEE
Confidence            99999999999999876432   11222211 1111111 111111111           123455 6787654   233


Q ss_pred             EEEEccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCC
Q 009027          329 YMFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF  405 (546)
Q Consensus       329 ~l~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg  405 (546)
                      .++.......   ...+.+++.+.+.+.++...    .++..... ...+|.......++..+|++|+|||||.++|++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G  311 (415)
T PRK07364        237 IVWTAPHAQAKALLALPEAEFLAELQQRYGDQL----GKLELLGD-RFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGG  311 (415)
T ss_pred             EEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhh----cCceecCC-CceecchhhhhhhhcCCcEEEEecccccCCCccc
Confidence            3222211000   01112222222222222111    11111111 1135555444457788999999999999999999


Q ss_pred             CcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       406 ~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ||+|++++|+..|++.|..+++.+. +......|+.|+
T Consensus       312 qG~n~al~DA~~La~~L~~~~~~~~-~~~~~~~L~~Y~  348 (415)
T PRK07364        312 QGLNLGIRDAAALAQVLQTAHQRGE-DIGSLAVLKRYE  348 (415)
T ss_pred             ccHhHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHH
Confidence            9999999999999999988875432 222235678999

>PRK06996 hypothetical protein; Provisional

Probab=99.97  E-value=3.6e-29  Score=266.71  Aligned_cols=311  Identities=14%  Similarity=0.142  Sum_probs=190.3

Q ss_pred             CCCCcccEEEEcc-hHHHHHHHHHHhCC----CeEEEEcCCCCCC---CcccccCCHHHHHHHHHcCCCCccc--chhhh
Q 009027          106 KAVGTFDVIVCGG-TLGIFIATALSFKG----LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDD--IDEAT  175 (546)
Q Consensus       106 ~~~~~yDVIIVGG-g~G~~~Aa~LA~~G----~rVlLlEr~~~~~---~~r~~~Is~~~l~~L~~lGl~~~~~--ie~~i  175 (546)
                      +.+.+|||+|||| ++|+++|+.|+++|    ++|+|+|+.+.+.   ..|...+++.+++.|+++|+|+...  ++...
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~   86 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH   86 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence            3556799999996 57999999999987    5799999986543   2367789999999999999997521  11111


Q ss_pred             hhcc-CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEcC
Q 009027          176 ATKF-NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSH  251 (546)
Q Consensus       176 ~~~~-~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g---~~i~Ar  251 (546)
                      .... ..+...|... .... ..+++.|++..|++.|.+++.+.|+++..+++++++..++++++|++.++   ++++|+
T Consensus        87 ~~~~~~~g~~~~~~~-~~~~-~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~  164 (398)
T PRK06996         87 VSQRGHFGRTLIDRD-DHDV-PALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRAR  164 (398)
T ss_pred             EecCCCCceEEeccc-ccCC-CcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeee
Confidence            1100 0112222211 1111 22467899999999999999999999999999999999999999998754   589999


Q ss_pred             EEEEecCC-ChHHHHHhcCCCC---CCeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027          252 LIIDAMGN-FSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (546)
Q Consensus       252 lVV~ADG~-~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~  326 (546)
                      +||+|||. .|.++++++....   +.+.+.+. .+....+ +....+.+...++           + ..+|..++....
T Consensus       165 lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~G~-----------~-~~lp~~~~~~~~  231 (398)
T PRK06996        165 IAVQAEGGLFHDQKADAGDSARRRDYGQTAIVG-TVTVSAPRPGWAWERFTHEGP-----------L-ALLPLGGPRQAD  231 (398)
T ss_pred             EEEECCCCCchHHHHHcCCCceeeecCCeEEEE-EEEccCCCCCEEEEEecCCCC-----------e-EEeECCCCCCCc
Confidence            99999997 5778888776532   22333322 1111111 1111122211111           1 134544321000


Q ss_pred             eEEEEEccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCC
Q 009027          327 TTYMFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV  403 (546)
Q Consensus       327 ~~~l~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pl  403 (546)
                      ..+++.......   ...+..+..+.+.+.++..    +..+...... ..+|.......++..+||+|+|||||.+||+
T Consensus       232 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~-~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~  306 (398)
T PRK06996        232 YALVWCCAPDEAARRAALPDDAFLAELGAAFGTR----MGRFTRIAGR-HAFPLGLNAARTLVNGRIAAVGNAAQTLHPV  306 (398)
T ss_pred             EEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccc----cCceEEecce-EEEeeecccccceecCCEEEEEhhhccCCcc
Confidence            122211111000   0001122222222222110    1122111111 2466665555678889999999999999999


Q ss_pred             CCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       404 sg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +|||+|++++|+..|++.|..   .+. .   ...|+.|+
T Consensus       307 ~GQG~n~ai~Da~~La~~L~~---~~~-~---~~~L~~Y~  339 (398)
T PRK06996        307 AGQGLNLGLRDAHTLADALSD---HGA-T---PLALATFA  339 (398)
T ss_pred             cchhHHHHHHHHHHHHHHHHh---cCC-c---HHHHHHHH
Confidence            999999999999999998854   222 1   23478999

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.97  E-value=1.1e-28  Score=260.49  Aligned_cols=307  Identities=19%  Similarity=0.189  Sum_probs=195.2

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCCcccchhhhhhcc-----
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKF-----  179 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~------~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~-----  179 (546)
                      ||+|||| ++|+++|..|+++|++|+|+||++.++.      .+...++++.++.|+++|++++.  .+......     
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~--~~~~~~~~~~~~~   78 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKI--EPDRAQPIRDIHV   78 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhh--hhhcCCCceEEEE
Confidence            8999996 5699999999999999999999998753      25578999999999999998642  22011111     


Q ss_pred             -CCC---cccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 009027          180 -NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (546)
Q Consensus       180 -~~~---~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV  254 (546)
                       ...   .+.+... .. .....++.+++..|.+.|.+.+.+.| ++++.+++|+++..+++++.|++++|++++|++||
T Consensus        79 ~~~~~~~~~~~~~~-~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi  156 (385)
T TIGR01988        79 SDGGSFGALHFDAD-EI-GLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLV  156 (385)
T ss_pred             EeCCCCceEEechh-hc-CCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEE
Confidence             010   0111100 00 01123467899999999999999888 89999999999998888999998888899999999


Q ss_pred             EecCCChHHHHHhcCCCCC---CeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027          255 DAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (546)
Q Consensus       255 ~ADG~~S~vr~ql~~~~~~---~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~  331 (546)
                      +|||.+|.+|++++...+.   ...+.+. ......+........     ..     ..+.+| .+|..++   ...+.+
T Consensus       157 ~adG~~S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~-----~~g~~~-~~p~~~~---~~~~~~  221 (385)
T TIGR01988       157 GADGANSKVRQLAGIPTTGWDYGQSAVVA-NVKHERPHQGTAWER-----FT-----PTGPLA-LLPLPDN---RSSLVW  221 (385)
T ss_pred             EeCCCCCHHHHHcCCCccccccCCeEEEE-EEEecCCCCCEEEEE-----ec-----CCCCEE-EeECCCC---CeEEEE
Confidence            9999999999998754321   1222211 111001110010000     00     123455 5787764   333333


Q ss_pred             EccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027          332 TYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (546)
Q Consensus       332 ~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~  408 (546)
                      ...+...   ...+.+++.+.+.+.++...    .++.... ....+|.......++..+||+|+|||||.++|++|+|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~  296 (385)
T TIGR01988       222 TLPPEEAERLLALSDEEFLAELQRAFGSRL----GAITLVG-ERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGL  296 (385)
T ss_pred             ECCHHHHHHHHcCCHHHHHHHHHHHHhhhc----CceEecc-CcceeechhhhhhheecCceEEEecccccCCccccchh
Confidence            3221100   01122333333333332211    1111111 12345665444456778999999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       409 g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +++++|+..|++.|..++..+. +......|+.|+
T Consensus       297 ~~Ai~da~~La~~L~~~~~~~~-~~~~~~~l~~y~  330 (385)
T TIGR01988       297 NLGLRDVAALAEVLEDARRRGE-DIGSPRVLQRYE  330 (385)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHH
Confidence            9999999999999998876431 111234568898

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08244 hypothetical protein; Provisional

Probab=99.97  E-value=4.4e-28  Score=265.39  Aligned_cols=303  Identities=20%  Similarity=0.247  Sum_probs=194.9

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhh--hh--ccC--C
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEAT--AT--KFN--P  181 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i--~~--~~~--~  181 (546)
                      +|||+|||| ++|+++|+.|+++|++|+||||++.+.. .+...+++++++.|+++|++++  +.+.-  ..  .+.  .
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~--l~~~~~~~~~~~~~~~~   79 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLER--FLEKGRKLPSGHFAGLD   79 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHH--HHhhcccccceEEeccc
Confidence            589999995 5799999999999999999999987643 4667899999999999999753  21110  00  000  0


Q ss_pred             CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc--CC-cEEEcCEEEEecC
Q 009027          182 NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG-KILSSHLIIDAMG  258 (546)
Q Consensus       182 ~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--~g-~~i~ArlVV~ADG  258 (546)
                      ..+.|.   ....+..+.+.+++..+++.|.+++.+.|++++.+++++++.+++++++|++.  +| ++++|++||+|||
T Consensus        80 ~~~~~~---~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG  156 (493)
T PRK08244         80 TRLDFS---ALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADG  156 (493)
T ss_pred             ccCCcc---cCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCC
Confidence            011111   01111223456899999999999999899999999999999999999888775  35 4799999999999


Q ss_pred             CChHHHHHhcCCCC---CCeeeeEEEEEe-eccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEcc
Q 009027          259 NFSPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI  334 (546)
Q Consensus       259 ~~S~vr~ql~~~~~---~~~~~~~vg~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~  334 (546)
                      .+|.+|+++++..+   +...+. ++... ...+.......+      .     ..+.+| ++|..++   ...+.+...
T Consensus       157 ~~S~vR~~lgi~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~------~-----~~g~~~-~~P~~~~---~~~~~~~~~  220 (493)
T PRK08244        157 AGSIVRKQAGIAFPGTDATFTAM-LGDVVLKDPPPSSVLSLC------T-----REGGVM-IVPLSGG---IYRVLIIDP  220 (493)
T ss_pred             CChHHHHhcCCCccCCCcceEEE-EEEEEecCCCCcceeEEE------e-----CCceEE-EEECCCC---eEEEEEEcC
Confidence            99999999976532   222221 11111 111111111111      0     123455 6787754   333333221


Q ss_pred             CCC--C--CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027          335 DPQ--A--GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS  410 (546)
Q Consensus       335 ~~~--~--~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~  410 (546)
                      ...  .  ...+.+++.+.+.+.++..-.  .....+    ...++.......++..+||+|+|||||.++|++|||+|+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~----~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~  294 (493)
T PRK08244        221 ERPQVPKDEPVTLEELKTSLIRICGTDFG--LNDPVW----MSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNV  294 (493)
T ss_pred             CcccccCCCCCCHHHHHHHHHHhhCCCCC--cCCeeE----EEecccceeeHhhhccCcEEEeecceeccCCcccccccc
Confidence            110  1  112555655555444332111  111111    112343333344677899999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       411 ~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +++|+..|+..|..+++. . +  .-..|+.|+
T Consensus       295 gi~DA~~La~~La~~l~g-~-~--~~~lL~~Ye  323 (493)
T PRK08244        295 GLQDAMNLGWKLAAAIKG-W-A--PDWLLDSYH  323 (493)
T ss_pred             chhhHHHHHHHHHHHHcC-C-C--CchhhhhhH
Confidence            999999999999988853 2 1  224578899

>PRK09126 hypothetical protein; Provisional

Probab=99.97  E-value=1.1e-28  Score=261.86  Aligned_cols=311  Identities=21%  Similarity=0.217  Sum_probs=191.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCCcccchhh-hhhc---
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEA-TATK---  178 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~------~r~~~Is~~~l~~L~~lGl~~~~~ie~~-i~~~---  178 (546)
                      +|||+||||| +|+++|+.|+++|++|+|+||.+.++.      .+...+++..++.|+++|+++...-... ....   
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~   82 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV   82 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence            5899999965 699999999999999999999987531      2345688999999999999764211000 0000   


Q ss_pred             cC---CCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 009027          179 FN---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (546)
Q Consensus       179 ~~---~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV  254 (546)
                      +.   ...+.|....  .....+++.+++..+++.|.+++.+ .|++++.+++|+++..+++++.|++++|++++||+||
T Consensus        83 ~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI  160 (392)
T PRK09126         83 LNGRSPFALTFDARG--RGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLV  160 (392)
T ss_pred             EcCCCCceeEeehhh--cCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEE
Confidence            00   0111221100  0112245668888999999998864 6899999999999998888888988888899999999


Q ss_pred             EecCCChHHHHHhcCCCCCC---eeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027          255 DAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (546)
Q Consensus       255 ~ADG~~S~vr~ql~~~~~~~---~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~  331 (546)
                      +|||.+|.+|+++++.....   ..+. +.......++.......+         + ..+.+| .||..++   ...+.+
T Consensus       161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~-~~~~~~-~~P~~~~---~~~~~~  225 (392)
T PRK09126        161 AADSRFSATRRQLGIGADMHDFGRTML-VCRMRHELPHHHTAWEWF---------G-YGQTLA-LLPLNGH---LSSLVL  225 (392)
T ss_pred             EeCCCCchhhHhcCCCccccccCCeEE-EEEEeccCCCCCEEEEEe---------c-CCCCeE-EeECCCC---CEEEEE
Confidence            99999999999997654221   1121 111111111111000000         1 123455 6787754   334333


Q ss_pred             EccCCCCC---CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027          332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (546)
Q Consensus       332 ~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~  408 (546)
                      ........   ..+.+++.+.+...++..    +........ ...+|.......++..+|++|+|||||.++|++|||+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~  300 (392)
T PRK09126        226 TLPPDQIEALLALDPEAFAAEVTARFKGR----LGAMRLVSS-RHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGF  300 (392)
T ss_pred             ECCHHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCC-CcEeechHHHHHHHhhcceEEEehhhhcCCCcccchh
Confidence            33211000   011122222221212111    011111111 1234444333446778999999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       409 g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |++++|+..|++.|..+++.+. +....+.|+.|+
T Consensus       301 ~~ai~da~~la~~L~~~~~~~~-~~~~~~~l~~Y~  334 (392)
T PRK09126        301 NLGLKGQDILARLILAAARRGQ-DIGAASLLERYE  334 (392)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCC-CCccHHHHHHHH
Confidence            9999999999999998886432 111234577899

>PRK06834 hypothetical protein; Provisional

Probab=99.97  E-value=8.3e-28  Score=262.46  Aligned_cols=304  Identities=20%  Similarity=0.237  Sum_probs=194.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC--CcccccCCHHHHHHHHHcCCCCcccchhhhh-hc-cCCCcc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG--REQEWNISRKELLELVESGILVEDDIDEATA-TK-FNPNRC  184 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~--~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~-~~-~~~~~v  184 (546)
                      ++||+|||| ++|+++|+.|+++|++|+||||.+.+.  ..+...+++++++.|+.+|++++  +.+... .. ......
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~--l~~~~~~~~~~~~~~~   80 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADR--FLAQGQVAQVTGFAAT   80 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHH--HHhcCCccccceeeeE
Confidence            589999995 579999999999999999999988654  23566899999999999999864  211100 00 000011


Q ss_pred             cccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       185 ~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                      .+.. ..+..+..+++.+.+..+++.|.+++.+.|++++.+++++++..+++++.|++.+|++++|++||+|||.+|.+|
T Consensus        81 ~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR  159 (488)
T PRK06834         81 RLDI-SDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR  159 (488)
T ss_pred             eccc-ccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence            1110 111222234567888999999999999999999999999999999999999987788999999999999999999


Q ss_pred             HHhcCCCC---CCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCC-CCCccceEEEEEccCCCC-C
Q 009027          265 KQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAG-SGPLDRTTYMFTYIDPQA-G  339 (546)
Q Consensus       265 ~ql~~~~~---~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~-~g~~~~~~~l~~~~~~~~-~  339 (546)
                      +++++..+   +...+.++...   .+.........     .     ..+.+. .+|.. ++   ...+++....... .
T Consensus       160 ~~lgi~~~g~~~~~~~~~~dv~---~~~~~~~~~~~-----~-----~~g~~~-~~~~~~~~---~~~~~~~~~~~~~~~  222 (488)
T PRK06834        160 KAAGIDFPGWDPTTSYLIAEVE---MTEEPEWGVHR-----D-----ALGIHA-FGRLEDEG---PVRVMVTEKQVGATG  222 (488)
T ss_pred             hhcCCCCCCCCcceEEEEEEEE---ecCCCCcceee-----C-----CCceEE-EeccCCCC---eEEEEEecCCCCCCC
Confidence            99986532   22222221111   11000000000     0     112222 23433 22   2222222111111 1


Q ss_pred             CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHH
Q 009027          340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS  419 (546)
Q Consensus       340 ~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~La  419 (546)
                      ..+.+++.+.+.+.++.-  .......+.    ..++.....+.++..+||+|+|||||.++|+.|||+|++++|+..|+
T Consensus       223 ~~~~~~~~~~l~~~~g~~--~~~~~~~~~----~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLa  296 (488)
T PRK06834        223 EPTLDDLREALIAVYGTD--YGIHSPTWI----SRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLG  296 (488)
T ss_pred             CCCHHHHHHHHHHhhCCC--CccccceeE----EeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHH
Confidence            224455544444433311  111111111    23444434456788999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCChhhHHHHhhhh
Q 009027          420 TGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       420 e~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ..|...++..  +  .-..|..|+
T Consensus       297 wkLa~vl~g~--~--~~~lLd~Ye  316 (488)
T PRK06834        297 WKLAQVVKGT--S--PESLLDTYH  316 (488)
T ss_pred             HHHHHHHcCC--C--cHHHHHHHH
Confidence            9988887632  1  235678999

>PRK10015 oxidoreductase; Provisional

Probab=99.97  E-value=3.6e-28  Score=261.39  Aligned_cols=320  Identities=17%  Similarity=0.178  Sum_probs=194.2

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc--cccCCHHHHHHHHHcCCCCcccchhhhhhc---c--C
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATK---F--N  180 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r--~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~---~--~  180 (546)
                      .+|||||||| ++|+++|+.||++|++|+||||.++++.+.  ...++...++.+.. ++.....++..+...   +  .
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~   82 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISFLTE   82 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEEEeC
Confidence            4699999996 579999999999999999999999887652  22344444444321 332211122211110   0  0


Q ss_pred             --CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          181 --PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       181 --~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                        ...+.|... ....+..-++.|+|..|+++|.+++++.|++++.+++|+++..+++.+.+...++.+++|++||+|||
T Consensus        83 ~~~~~~~~~~~-~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG  161 (429)
T PRK10015         83 ESAVTLDFHRE-QPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG  161 (429)
T ss_pred             CCceEeecccC-CCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence              011122111 11111122578999999999999999999999999999999877777653333556899999999999


Q ss_pred             CChHHHHHhcCCCC--CCeeeeEEEEEeeccCCCceeeeec----------cCCcccccCCCCcceEEEEecCCCCCccc
Q 009027          259 NFSPVVKQIRSGRK--PDGVCLVVGSCARGFKDNSTSDVIY----------SSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (546)
Q Consensus       259 ~~S~vr~ql~~~~~--~~~~~~~vg~~~~~~~~~~~~~i~~----------~~~~i~~~~~~~~~~~W~~fp~~~g~~~~  326 (546)
                      .+|.++++++....  +..+...+.... .++.....+.+.          ..+...   ++..++.| +|+..+.   .
T Consensus       162 ~~s~v~~~lg~~~~~~~~~~~~gvk~~~-~~~~~~i~~~~~~~~~~g~~w~~~g~~~---~g~~g~G~-~~~~~d~---v  233 (429)
T PRK10015        162 VNSMLGRSLGMVPASDPHHYAVGVKEVI-GLTPEQINDRFNITGEEGAAWLFAGSPS---DGLMGGGF-LYTNKDS---I  233 (429)
T ss_pred             cchhhhcccCCCcCCCcCeEEEEEEEEE-eCCHHHhhHhhcCCCCCCeEEEecCccC---CCCCCceE-EEEcCCc---E
Confidence            99999999876432  222222221111 122110001110          000000   00112334 4555432   4


Q ss_pred             eEEEEEcc-CCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCC--
Q 009027          327 TTYMFTYI-DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSP--  402 (546)
Q Consensus       327 ~~~l~~~~-~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~P--  402 (546)
                      ..++.... .......++.+++++|. ..|.++.. ++..+........+|.... ...+.+.+|+++|||||+++||  
T Consensus       234 ~vGv~~~~~~~~~~~~~~~~~l~~~~-~~p~~~~~-~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~  311 (429)
T PRK10015        234 SLGLVCGLGDIAHAQKSVPQMLEDFK-QHPAIRPL-ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLG  311 (429)
T ss_pred             EEEEEEehhhhccCCCCHHHHHHHHh-hChHHHHH-hcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccC
Confidence            44443322 11112347788888874 55555442 2222333333456776532 2236789999999999999995  


Q ss_pred             CCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       403 lsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +++.|++.++..+...|+.|.+|++.++.+...|   +.|+
T Consensus       312 ~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l---~~Y~  349 (429)
T PRK10015        312 FTVRGMDLAIASAQAAATTVIAAKERADFSASSL---AQYK  349 (429)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCCCccccH---HHHH
Confidence            5999999999999989999999999877665554   6788

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.97  E-value=1.7e-29  Score=261.80  Aligned_cols=310  Identities=21%  Similarity=0.221  Sum_probs=182.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||+||||| +|+++|+.|+++|++|+|+||++.+... +...+++.+++.|+++|+++.  +..... ........+.
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--~~~~~~-~~~~~~~~~~   77 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDE--ILARGS-PHEVMRIFFY   77 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHH--HHHHSE-EECEEEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhh--hhhhcc-cccceeeEee
Confidence            3899999965 6999999999999999999999877543 456789999999999998753  211110 0000000000


Q ss_pred             CC--------------ccc--cccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---C--c
Q 009027          188 GK--------------GEI--WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--K  246 (546)
Q Consensus       188 ~~--------------~~l--~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g--~  246 (546)
                      ..              ..+  ..+......+++..|++.|.+.+.+.|++++.+++++++..+++++++.+.+   |  +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~  157 (356)
T PF01494_consen   78 DGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEE  157 (356)
T ss_dssp             EETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEE
T ss_pred             cccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCcee
Confidence            00              000  1112223568999999999999999999999999999999999998776643   3  2


Q ss_pred             EEEcCEEEEecCCChHHHHHhcCCCCCCeee---eEEEEEee-ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCC
Q 009027          247 ILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC---LVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG  322 (546)
Q Consensus       247 ~i~ArlVV~ADG~~S~vr~ql~~~~~~~~~~---~~vg~~~~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g  322 (546)
                      +++||+||+|||.+|.+|++++...+....+   ...+.... .+++......+...   .     ..+.+| .+|..+.
T Consensus       158 ~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~-~~p~~~~  228 (356)
T PF01494_consen  158 TIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYS---P-----PSGGFA-IIPLENG  228 (356)
T ss_dssp             EEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEE---E-----TTEEEE-EEEETTT
T ss_pred             EEEEeeeecccCcccchhhhccccccCcccccccccccccccccccccccccccccc---c-----ccccee-EeeccCC
Confidence            7999999999999999999997552211111   11111111 11110000111110   0     123334 6776652


Q ss_pred             CccceEEEEEc--cCCCCCC--c-cHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCC
Q 009027          323 PLDRTTYMFTY--IDPQAGS--P-KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDAS  397 (546)
Q Consensus       323 ~~~~~~~l~~~--~~~~~~~--~-~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA  397 (546)
                        ....+++..  .......  . ..+++++.+....... ..   ......  ...+|.......++..+||+||||||
T Consensus       229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~--~~~~~~~~~~~~~~~~grv~LiGDAA  300 (356)
T PF01494_consen  229 --DRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPD-LL---ETEIDE--ISAWPIPQRVADRWVKGRVLLIGDAA  300 (356)
T ss_dssp             --TEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTC-HH---HHEEEE--EEEEEEEEEEESSSEETTEEE-GGGT
T ss_pred             --ccceEEEeeecccccccccccccccccccccccccccc-cc---cccccc--ccccccccccccccccceeEEeccce
Confidence              122222222  2111111  1 2223332222211110 00   111111  11233333233467779999999999


Q ss_pred             CCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          398 GIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       398 ~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |.++|++|+|+|.++.|+..|++.|..+++ |. .  .-+.|+.|+
T Consensus       301 h~~~P~~GqG~n~Ai~da~~La~~L~~~~~-g~-~--~~~~l~~Y~  342 (356)
T PF01494_consen  301 HAMDPFSGQGINMAIEDAAALAELLAAALK-GE-A--SEEALKAYE  342 (356)
T ss_dssp             EEE-CCTSHHHHHHHHHHHHHHHHHHHHHT-TS-S--HHHHHHHHH
T ss_pred             eeecccccCCCCcccccHHHHHHHHHHHhc-CC-c--HHHHHHHHH
Confidence            999999999999999999999999998876 32 2  234578999

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02697 lycopene epsilon cyclase

Probab=99.96  E-value=9e-27  Score=254.64  Aligned_cols=360  Identities=15%  Similarity=0.155  Sum_probs=230.1

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      ..|||+|||| ++|+++|+.|+++|++|+|||+.....  ..|+++..+   +.++|+.      .++...+....+.+.
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~--~n~GvW~~~---l~~lgl~------~~i~~~w~~~~v~~~  175 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDE---FKDLGLE------DCIEHVWRDTIVYLD  175 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC--CccccchhH---HHhcCcH------HHHHhhcCCcEEEec
Confidence            3699999995 579999999999999999999863322  235666543   5566652      223333433333333


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEE-EEcCCcEEEcCEEEEecCCChHHHHH
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFSPVVKQ  266 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V-~~~~g~~i~ArlVV~ADG~~S~vr~q  266 (546)
                      ....+.....+ ..|++..|++.|.+++.+.|+++ .+++|+++..+++++.+ .+.+|.+++|++||+|||.+|.  +.
T Consensus       176 ~~~~~~~~~~Y-g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~--rl  251 (529)
T PLN02697        176 DDKPIMIGRAY-GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG--RL  251 (529)
T ss_pred             CCceeeccCcc-cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh--hh
Confidence            22222221111 24899999999999999999998 67899999887777654 4567789999999999999994  22


Q ss_pred             hcCC--CC--CCeeeeEEEEEee--ccC-CCceeeeeccCCcc----c-ccCCCCcceEEEEecCCCCCccceEEE-EEc
Q 009027          267 IRSG--RK--PDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSV----K-KVGDSEVQLFWEAFPAGSGPLDRTTYM-FTY  333 (546)
Q Consensus       267 l~~~--~~--~~~~~~~vg~~~~--~~~-~~~~~~i~~~~~~i----~-~~~~~~~~~~W~~fp~~~g~~~~~~~l-~~~  333 (546)
                      +...  .+  ..+.+  .|...+  ..+ +.+. .+++++...    . ........++| ++|.+++    ..++ .++
T Consensus       252 ~~~~~~~~~~~~Q~a--~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlY-vlP~~~~----~~~VE~T~  323 (529)
T PLN02697        252 LQYEVGGPRVCVQTA--YGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLY-AMPMSST----RVFFEETC  323 (529)
T ss_pred             hccccCCCCcccEEE--EEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEE-EeecCCC----eEEEEEee
Confidence            2211  11  11222  222221  111 1121 234332211    0 01112346778 8999864    2222 221


Q ss_pred             c-C-CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhh
Q 009027          334 I-D-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL  411 (546)
Q Consensus       334 ~-~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~  411 (546)
                      . . +......+++.+.+|++..+ +     ...++.+.++|.+|+...  .+...+++++|||||+++||.||+||..+
T Consensus       324 l~~~~~l~~~~l~~~L~~~l~~~G-i-----~~~~i~~~E~g~iPm~g~--~~~~~~~vl~vG~AAG~vhPsTGy~v~~~  395 (529)
T PLN02697        324 LASKDAMPFDLLKKRLMSRLETMG-I-----RILKTYEEEWSYIPVGGS--LPNTEQKNLAFGAAASMVHPATGYSVVRS  395 (529)
T ss_pred             eccCCCCCHHHHHHHHHHHHHhCC-C-----CcceEEEEEeeeecCCCC--CcccCCCeeEeehhhcCCCCchhhhHHHH
Confidence            1 1 11112356666777776542 2     233445667889999653  22237899999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhCCC---C-Ch--hhHHHHhhhh-------------------------------------hcCch
Q 009027          412 TRHLGRLSTGVYEAVRGDF---V-DS--YSLSLLNPYM-------------------------------------KLGDP  448 (546)
Q Consensus       412 lrd~~~Lae~I~~Al~~g~---l-~~--~~l~~L~~Ye-------------------------------------~l~~~  448 (546)
                      ++.+..+|+.|.++++.+.   . +.  .....++.|+                                     +|+++
T Consensus       396 l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~~l~~~~~~~ff~~ff~L~~~  475 (529)
T PLN02697        396 LSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKW  475 (529)
T ss_pred             HHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH
Confidence            9999999999999998774   0 00  1122334454                                     77778


Q ss_pred             hhhHHHHhhhcchhHHHHHHHHHhhCCCcHHHHHHh--cChhhHHHHHHHHHH
Q 009027          449 VLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ--VGIPVLVDWSGHFFM  499 (546)
Q Consensus       449 ~~~~~~~d~~~~~~~~~~~~~~~~~~P~~l~~~~~~--~g~~~~~~w~~~~~~  499 (546)
                      +++.|+.+.++..++..+++.++...|.-+.+-+-.  .+.....+.+++|..
T Consensus       476 ~~~~Fl~~~l~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  528 (529)
T PLN02697        476 MWQGFLGSTLSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYLT  528 (529)
T ss_pred             HHhhHhhccCCHHHHHHHHHHHHHhCChhHHHHHHHhhcCCchHhHHHHHhhc
Confidence            888888888888888889999988888877654433  444666777777754

>PRK07190 hypothetical protein; Provisional

Probab=99.96  E-value=3.4e-27  Score=257.45  Aligned_cols=308  Identities=16%  Similarity=0.163  Sum_probs=196.4

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhh---hccCCCc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNPNR  183 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~---~~~~~~~  183 (546)
                      ..+||+|||| ++|+++|+.|+++|++|+||||.+.+.. .++..+++.+++.|+.+|++++..-.....   ..+....
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~   83 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGK   83 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCc
Confidence            3689999995 5799999999999999999999987643 345578999999999999975321000000   0011111


Q ss_pred             -ccccC--Ccccc-ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          184 -CGFEG--KGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       184 -v~f~~--~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                       +....  ...+. ......+.+.+..+++.|.+++.+.|++++.+++|+++.++++++++.+.+|++++|++||+|||.
T Consensus        84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCC
Confidence             00000  00000 111122457888999999999999999999999999999999999888878889999999999999


Q ss_pred             ChHHHHHhcCCCCC---CeeeeEEEE-EeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccC
Q 009027          260 FSPVVKQIRSGRKP---DGVCLVVGS-CARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID  335 (546)
Q Consensus       260 ~S~vr~ql~~~~~~---~~~~~~vg~-~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~  335 (546)
                      +|.+|++++++.+.   ......+.. ....+++... ...+. .   +    ...++|  +|..++   ...++.... 
T Consensus       164 ~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~-~~~~~-~---~----~g~~~~--~p~~~~---~~r~~~~~~-  228 (487)
T PRK07190        164 RSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPE-IIVFQ-A---E----TSDVAW--IPREGE---IDRFYVRMD-  228 (487)
T ss_pred             CHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcc-eEEEE-c---C----CCCEEE--EECCCC---EEEEEEEcC-
Confidence            99999999876432   111111111 1111211000 00010 0   0    234555  565543   232222221 


Q ss_pred             CCCCCccHHHHHHHHHHhCccccccccCcceEeeee-eeeeccccCCCCCcc-CCcEEEeCCCCCCCCCCCCCcchhhHh
Q 009027          336 PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVI-YGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTR  413 (546)
Q Consensus       336 ~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~-~g~~P~~~~~~~~~~-~~rvlLVGDAA~~v~Plsg~G~g~~lr  413 (546)
                        ....+.+++.+...+.+...      ++.+.... ...||.......++. .+||+|+|||||.++|..|||+|++++
T Consensus       229 --~~~~t~~~~~~~l~~~~~~~------~~~~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giq  300 (487)
T PRK07190        229 --TKDFTLEQAIAKINHAMQPH------RLGFKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLA  300 (487)
T ss_pred             --CCCCCHHHHHHHHHHhcCCC------CCceEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHH
Confidence              11234555555444323111      11122221 134566655566775 799999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          414 HLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       414 d~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |+..|+..|...++..  +  .-..|..|+
T Consensus       301 DA~nL~wkLa~v~~g~--a--~~~lLdtY~  326 (487)
T PRK07190        301 DAFNLIWKLNMVIHHG--A--SPELLQSYE  326 (487)
T ss_pred             HHHHHHHHHHHHHcCC--C--cHHHHHHHH
Confidence            9999999998877643  2  245678999

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.96  E-value=9.5e-28  Score=253.69  Aligned_cols=306  Identities=18%  Similarity=0.198  Sum_probs=187.4

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCC-CeEEEEcCCCCCCCc-----ccccCCHHHHHHHHHcCCCCcccchhhhhhcc---CC
Q 009027          112 DVIVCGG-TLGIFIATALSFKG-LRVAIVERNTLKGRE-----QEWNISRKELLELVESGILVEDDIDEATATKF---NP  181 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G-~rVlLlEr~~~~~~~-----r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~---~~  181 (546)
                      ||+|||| ++|+++|+.|+++| ++|+|+||.+.++..     +...+++++++.|+++|+++...-........   ..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            8999996 56999999999999 999999999876542     44679999999999999986421000000000   00


Q ss_pred             ---CcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEec
Q 009027          182 ---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (546)
Q Consensus       182 ---~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~AD  257 (546)
                         ..+.+.. ..... ...++.+++..|++.|.+++.+. |++++.+++|+++..++++++|++++|.+++||+||+||
T Consensus        81 ~~~~~~~~~~-~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRA-SEFGL-PALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEech-hhcCC-CccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence               0011110 00011 12346799999999999999884 899999999999998889999998888899999999999


Q ss_pred             CCChHHHHHhcCCCCC---CeeeeEEEEEeeccCC-CceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEc
Q 009027          258 GNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY  333 (546)
Q Consensus       258 G~~S~vr~ql~~~~~~---~~~~~~vg~~~~~~~~-~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~  333 (546)
                      |.+|.+++++++....   .+.+.... +....+. ......+.           ..+.++ .+|..++.  ...+.+..
T Consensus       159 G~~S~vr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~~--~~~~~~~~  223 (382)
T TIGR01984       159 GANSKVRELLSIPTEEHDYNQTALIAN-IRHEQPHQGCAFERFT-----------PHGPLA-LLPLKDNY--RSSLVWCL  223 (382)
T ss_pred             CCChHHHHHcCCCCcccccCCEEEEEE-EEecCCCCCEEEEeeC-----------CCCCeE-ECcCCCCC--CEEEEEEC
Confidence            9999999999765322   12222211 1111111 10001110           112233 46766441  22222222


Q ss_pred             cCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027          334 IDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS  410 (546)
Q Consensus       334 ~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~  410 (546)
                      .....   ...+.++..+.+.+.++..    +..+...... ..+|.......++..+||+|+|||||.++|++|+|+|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~  298 (382)
T TIGR01984       224 PSKQADTIANLPDAEFLAELQQAFGWR----LGKITQVGER-KTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNL  298 (382)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCCc-cEeecchhhhhheecCCEEEEeecccccCCccccchhh
Confidence            11000   0011222223222222110    1111111111 23455433344667799999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       411 ~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +++|+..|++.|..++. +   ...-..|+.|+
T Consensus       299 al~Da~~La~~L~~~~~-~---~~~~~~l~~Y~  327 (382)
T TIGR01984       299 GLRDVETLAEVLIDARI-D---LGTYALLQEYL  327 (382)
T ss_pred             hHHHHHHHHHHHHHhcc-C---ccCHHHHHHHH
Confidence            99999999999887652 1   11234568899

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07045 putative monooxygenase; Reviewed

Probab=99.96  E-value=3.5e-27  Score=250.36  Aligned_cols=311  Identities=15%  Similarity=0.157  Sum_probs=187.8

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc-
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF-  186 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f-  186 (546)
                      .+||+|||| ++|+++|+.|+++|++|+|+||++.++.. +...|++..++.|+++|+++..  .+......  ..+.+ 
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~--~~~~~~~~--~~~~~~   80 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDV--FAAGGLRR--DAMRLY   80 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHH--Hhcccccc--cceEEe
Confidence            689999996 56999999999999999999999877532 3345899999999999998642  11100000  00111 


Q ss_pred             cCCcc---ccc----cccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEcCEEEEe
Q 009027          187 EGKGE---IWV----EDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDA  256 (546)
Q Consensus       187 ~~~~~---l~~----~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv--~V~~~~g~~i~ArlVV~A  256 (546)
                      ..+..   +..    +....+.+++..|.+.|.+++.. .|++++.+++++++..+++++  .|++++|++++|++||+|
T Consensus        81 ~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgA  160 (388)
T PRK07045         81 HDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA  160 (388)
T ss_pred             cCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEEC
Confidence            11110   000    01112457899999999999865 578999999999999877764  577778889999999999


Q ss_pred             cCCChHHHHHh-cCCC---CCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE
Q 009027          257 MGNFSPVVKQI-RSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT  332 (546)
Q Consensus       257 DG~~S~vr~ql-~~~~---~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~  332 (546)
                      ||.+|.+|+++ +...   ++...+. .+.....-........++.         ...+++| .+|..++   .....+.
T Consensus       161 DG~~S~vR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~p~~~~---~~~~~~~  226 (388)
T PRK07045        161 DGARSMIRDDVLRMPAERVPYATPMA-FGTIALTDSVRECNRLYVD---------SNQGLAY-FYPIGDQ---ATRLVVS  226 (388)
T ss_pred             CCCChHHHHHhhCCCcccCCCCccee-EEEEeccCCccccceEEEc---------CCCceEE-EEEcCCC---cEEEEEE
Confidence            99999999975 4332   1222221 1222110000011111111         1235566 6787644   2333332


Q ss_pred             ccCCCCC---C-ccHHHHHHHHHHhC-ccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 009027          333 YIDPQAG---S-PKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG  407 (546)
Q Consensus       333 ~~~~~~~---~-~~l~~l~~~~~~~l-p~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G  407 (546)
                      +......   . ...+++.+.+.+.+ +..... ++.... ...+..+|.......++..+||+|||||||.++|++|+|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG  304 (388)
T PRK07045        227 FPADEMQGYLADTTRTKLLARLNEFVGDESADA-MAAIGA-GTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQG  304 (388)
T ss_pred             eccccchhccCCCCHHHHHHHHhhhcCccchHH-HhccCc-ccccceeecCccccccccCCCEEEEEccccccCCCcccc
Confidence            2211110   0 12223322222222 111110 111110 111223454433344677899999999999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       408 ~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      .|++++|+..|++.|..++..+.   ..-..|+.|+
T Consensus       305 ~n~ai~Da~~La~~L~~~~~~~~---~~~~~L~~Ye  337 (388)
T PRK07045        305 MNLAIEDAGELGACLDLHLSGQI---ALADALERFE  337 (388)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCch---hHHHHHHHHH
Confidence            99999999999999988764321   1234678899

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.96  E-value=3.1e-27  Score=250.23  Aligned_cols=306  Identities=20%  Similarity=0.171  Sum_probs=189.0

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCCcccchhhhhhcc-CC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKF-NP  181 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~------~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~-~~  181 (546)
                      .+||+||||| +|+++|+.|++.|++|+|+||++.++.      .+...+++.+++.|+.+|++++.  +.   ..+ ..
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~--~~---~~~~~~   79 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQAL--DA---ARLAPV   79 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhh--hh---hcCCcc
Confidence            6899999965 699999999999999999999987643      12346889999999999998642  11   011 00


Q ss_pred             CcccccCC--ccccc------cccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCE
Q 009027          182 NRCGFEGK--GEIWV------EDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (546)
Q Consensus       182 ~~v~f~~~--~~l~~------~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~Arl  252 (546)
                      ..+.+.+.  ..+..      .....+.+++..|++.|.+++.+.| ++++ +++++++..+++++.|++++|++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~  158 (388)
T PRK07608         80 YDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADL  158 (388)
T ss_pred             eEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeE
Confidence            11111110  00110      0112456899999999999999888 7888 9999999888889999988888899999


Q ss_pred             EEEecCCChHHHHHhcCCCCC---CeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027          253 IIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (546)
Q Consensus       253 VV~ADG~~S~vr~ql~~~~~~---~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~  329 (546)
                      ||+|||.+|.+++.++.....   .+.+.++..  + .+.......+...   .     ..+++| .+|..++   ....
T Consensus       159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~---~-----~~~~~~-~~p~~~~---~~~~  223 (388)
T PRK07608        159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANF--K-AERPHRGTAYQWF---R-----DDGILA-LLPLPDG---HVSM  223 (388)
T ss_pred             EEEeCCCCchHHHhcCCCccccccCCEEEEEEE--E-ecCCCCCEEEEEe---c-----CCCCEE-EeECCCC---CeEE
Confidence            999999999999998765322   222221111  1 0100000000000   0     134455 5787755   2222


Q ss_pred             EEEccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 009027          330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (546)
Q Consensus       330 l~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~  406 (546)
                      .+.......   ...+.+++.+.+....+..    +..+...... ..+|.......++..+|++|||||||.++|++||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~Gq  298 (388)
T PRK07608        224 VWSARTAHADELLALSPEALAARVERASGGR----LGRLECVTPA-AGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQ  298 (388)
T ss_pred             EEECCHHHHHHHHCCCHHHHHHHHHHHHHHh----cCCceecCCc-ceeecchhhhhhhhcCceEEEeccccccCCcccc
Confidence            222211000   0111122222222222110    1112111111 1245543334467789999999999999999999


Q ss_pred             cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |+|++++|+..|++.|..+...+..  .....|+.|+
T Consensus       299 G~n~ai~da~~La~~L~~~~~~~~~--~~~~~l~~Ye  333 (388)
T PRK07608        299 GMNLGLRDVAALADVLAGREPFRDL--GDLRLLRRYE  333 (388)
T ss_pred             ccchhHHHHHHHHHHHHHhhccCCC--ccHHHHHHHH
Confidence            9999999999999999776432221  2235678999

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.96  E-value=4.4e-27  Score=253.05  Aligned_cols=320  Identities=14%  Similarity=0.201  Sum_probs=190.6

Q ss_pred             CCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc--cccCCHHHHHHHHHcCCCCcccchhhhhhc---c--
Q 009027          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATK---F--  179 (546)
Q Consensus       108 ~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r--~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~---~--  179 (546)
                      +++|||||||| ++|+++|+.||++|++|+||||+.+|+.+.  ...++...++.+.. .++....++..+..+   +  
T Consensus         3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~-~~~~~~~~~~~~~~~~~~~~~   81 (428)
T PRK10157          3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP-GFADSAPVERLITHEKLAFMT   81 (428)
T ss_pred             cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhh-hhhhcCcccceeeeeeEEEEc
Confidence            34799999995 579999999999999999999999887642  22344444443311 111111122211110   0  


Q ss_pred             CCCc--ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEec
Q 009027          180 NPNR--CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (546)
Q Consensus       180 ~~~~--v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~AD  257 (546)
                      ....  +.|... ....+....+.|+|..|+++|.+++.+.|++++++++|+++..+++.+.+...++.+++|++||+||
T Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~  160 (428)
T PRK10157         82 EKSAMTMDYCNG-DETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILAD  160 (428)
T ss_pred             CCCceeeccccc-cccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEe
Confidence            0011  111111 0111122357789999999999999999999999999999988777765444567789999999999


Q ss_pred             CCChHHHHHhcCCCC--CCeeeeEEEEEeeccCCC----------ceeee-eccCCcccccCCCCcceEEEEecCCCCCc
Q 009027          258 GNFSPVVKQIRSGRK--PDGVCLVVGSCARGFKDN----------STSDV-IYSSSSVKKVGDSEVQLFWEAFPAGSGPL  324 (546)
Q Consensus       258 G~~S~vr~ql~~~~~--~~~~~~~vg~~~~~~~~~----------~~~~i-~~~~~~i~~~~~~~~~~~W~~fp~~~g~~  324 (546)
                      |.+|.++++++...+  +..++..+..... .+..          ..+.+ ++...+..   + -.++.| .|+..+.  
T Consensus       161 G~~s~l~~~lgl~~~~~~~~~av~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~---g-~~ggG~-~~~~~~~--  232 (428)
T PRK10157        161 GVNSILAEKLGMAKRVKPTDVAVGVKELIE-LPKSVIEDRFQLQGNQGAACLFAGSPTD---G-LMGGGF-LYTNENT--  232 (428)
T ss_pred             CCCHHHHHHcCCCCCCCCcEEEEEEEEEEE-cCHHHHHHhhccCCCCCeEEEEEECCCC---C-CcCcee-EEEcCCe--
Confidence            999999999876532  2333321111111 1100          00001 11000100   0 112234 4565432  


Q ss_pred             cceEEEEEccC-CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCC
Q 009027          325 DRTTYMFTYID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSP  402 (546)
Q Consensus       325 ~~~~~l~~~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~P  402 (546)
                       ...++....+ ......+..++++.| ..+|.++.. +...+........+|.... ...+.+.+++++|||||++++|
T Consensus       233 -~svG~~~~~~~~~~~~~~~~~~l~~~-~~~p~v~~~-~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p  309 (428)
T PRK10157        233 -LSLGLVCGLHHLHDAKKSVPQMLEDF-KQHPAVAPL-IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMN  309 (428)
T ss_pred             -EEEEEEEehHHhcccCCCHHHHHHHH-HhCchHHHH-hCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccc
Confidence             3444433222 112234667777766 445554432 1111111111223554321 1235678999999999999999


Q ss_pred             C--CCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          403 V--SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       403 l--sg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +  ++.|+..++..+..+|+.|.++++.++.++..   |+.|+
T Consensus       310 ~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~---l~~Y~  349 (428)
T PRK10157        310 LGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQK---LAEYR  349 (428)
T ss_pred             cCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhh---HHHHH
Confidence            5  89999999999999999999999987755544   46788

>PRK06184 hypothetical protein; Provisional

Probab=99.96  E-value=1e-26  Score=255.10  Aligned_cols=310  Identities=15%  Similarity=0.129  Sum_probs=187.1

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhh---ccCC-Cc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATAT---KFNP-NR  183 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~---~~~~-~~  183 (546)
                      ++||+|||| ++|+++|+.|+++|++|+||||++.+.. .+...|++++++.|+++|++++..-......   .+.. ..
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~   82 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS   82 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence            589999995 5799999999999999999999887643 4566799999999999999753110000000   0110 00


Q ss_pred             c---cccCC-c-cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE---cCCcEEEcCEEEE
Q 009027          184 C---GFEGK-G-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIID  255 (546)
Q Consensus       184 v---~f~~~-~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~---~~g~~i~ArlVV~  255 (546)
                      +   .+... . ....+....+.+++..+++.|.+++.+.|++++.+++++++.++++++++++   .++++++|++||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVg  162 (502)
T PRK06184         83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVG  162 (502)
T ss_pred             EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEE
Confidence            0   00000 0 0011112235688999999999999999999999999999999999988887   4566899999999


Q ss_pred             ecCCChHHHHHhcCCCCC---Ce-eeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027          256 AMGNFSPVVKQIRSGRKP---DG-VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (546)
Q Consensus       256 ADG~~S~vr~ql~~~~~~---~~-~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~  331 (546)
                      |||.+|.+|+++++...-   .. .+.++.......+ ......+..        . ..+.+ ..+|..++  ....+.+
T Consensus       163 ADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~-~~~~~-~~~p~~~~--~~~~~~~  229 (502)
T PRK06184        163 ADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLD-RDAWHQWPD--------G-DMGMI-ALCPLPGT--DLFQIQA  229 (502)
T ss_pred             CCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCC-CcceEEccC--------C-CCcEE-EEEEccCC--CeEEEEE
Confidence            999999999999865421   11 2221111111111 011111110        0 11222 24555432  1222222


Q ss_pred             EccCCCCCCccHHHHHHHHHHhCccccccccCcceEeeee-eeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027          332 TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVI-YGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS  410 (546)
Q Consensus       332 ~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~-~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~  410 (546)
                      ..........+.+++.+.+....+..      ...+.... ...++.....+.++..+||+|+|||||.++|+.|||+|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~  303 (502)
T PRK06184        230 PLPPGGEPDLSADGLTALLAERTGRT------DIRLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNT  303 (502)
T ss_pred             EcCCCccCCCCHHHHHHHHHHhcCCC------CcceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccc
Confidence            22111111112222222222222111      11111111 122333222334677899999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       411 ~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +++|+..|+..|..+++. .    .-..|+.|+
T Consensus       304 gi~DA~~LawkLa~vl~g-~----~~~lL~~Ye  331 (502)
T PRK06184        304 SVQDAYNLGWKLAAVLAG-A----PEALLDTYE  331 (502)
T ss_pred             hHHHHHHHHHHHHHHHcC-C----CHHHHHHHH
Confidence            999999999999877754 1    233578899

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.96  E-value=1.1e-26  Score=235.41  Aligned_cols=287  Identities=21%  Similarity=0.221  Sum_probs=186.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      |||+||||| +|+++|+.|+++|++|+|+||+..++.. ....+++..++.|...+..   ...     ..+...+....
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-----~~~~~~~~~~~   72 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL---IVN-----LVRGARFFSPN   72 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh---hhh-----heeeEEEEcCC
Confidence            799999965 6999999999999999999999876642 3346777776665443321   110     01100000001


Q ss_pred             Ccc--ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEcCEEEEecCCChHHHH
Q 009027          189 KGE--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPVVK  265 (546)
Q Consensus       189 ~~~--l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-g~~i~ArlVV~ADG~~S~vr~  265 (546)
                      +..  ...+....+.+++..|.+.|.+++.+.|++++.+++++++..+++++.+.+.+ +.+++|++||+|||.+|.+++
T Consensus        73 ~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~  152 (295)
T TIGR02032        73 GDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAK  152 (295)
T ss_pred             CcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHH
Confidence            111  11112234579999999999999999999999999999999888888877654 458999999999999999999


Q ss_pred             HhcCCCCCCeeeeEEEEEeecc--C-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCcc
Q 009027          266 QIRSGRKPDGVCLVVGSCARGF--K-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPK  342 (546)
Q Consensus       266 ql~~~~~~~~~~~~vg~~~~~~--~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~~  342 (546)
                      +++....+...+.........-  + ..+...++......      ..++.| .+|..++   .....+..... ....+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~P~~~~---~~~v~~~~~~~-~~~~~  221 (295)
T TIGR02032       153 KLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGIS------PGGYGW-VFPKGDG---TANVGVGSRSA-EEGED  221 (295)
T ss_pred             hcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcC------CCceEE-EEeCCCC---eEEEeeeeccC-CCCCC
Confidence            8876543333332211111100  0 11112232222111      246788 7898765   22222222111 12347


Q ss_pred             HHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHH
Q 009027          343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV  422 (546)
Q Consensus       343 l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I  422 (546)
                      +++.+++|.+..|.+..     .+..+.....+|... ...+...+|++++|||||+++|++|+|++++++|+..+++.|
T Consensus       222 ~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~-~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       222 LKKYLKDFLARRPELKD-----AETVEVIGAPIPIGR-PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             HHHHHHHHHHhCccccc-----CcEEeeeceeeccCC-CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence            88999999987776332     233333334455532 344678899999999999999999999999999988887753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.96  E-value=3.1e-26  Score=253.41  Aligned_cols=306  Identities=17%  Similarity=0.154  Sum_probs=185.2

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~-~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .++||+|||| +.|+++|+.|+++|++|+|+||++.+. ..+.+.+++++++.|+++|++++  +.+.   ......+.|
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~--l~~~---~~~~~~~~~   83 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADE--VLPH---TTPNHGMRF   83 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhH--HHhh---cccCCceEE
Confidence            3699999996 569999999999999999999998654 35678899999999999999754  2111   110011111


Q ss_pred             c--CCccc-ccc--------ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEc
Q 009027          187 E--GKGEI-WVE--------DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EG--KILSS  250 (546)
Q Consensus       187 ~--~~~~l-~~~--------~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~--~g--~~i~A  250 (546)
                      .  .+..+ ..+        ....+.+++..+++.|.+.+.+. |++++.+++|+++.+++++++|+++  +|  ++++|
T Consensus        84 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~a  163 (538)
T PRK06183         84 LDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRA  163 (538)
T ss_pred             EcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEE
Confidence            1  01100 000        01124578889999999998775 8899999999999999999999886  45  47999


Q ss_pred             CEEEEecCCChHHHHHhcCCCC---CCeeeeEEEEEeeccCC-CceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027          251 HLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (546)
Q Consensus       251 rlVV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~-~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~  326 (546)
                      |+||+|||.+|.+|+++++...   +...+.++......... ......++         +.+..++  .+|..++   .
T Consensus       164 d~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~p~~~~---~  229 (538)
T PRK06183        164 RYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYC---------DPARPYT--SVRLPHG---R  229 (538)
T ss_pred             EEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEE---------CCCCCEE--EEEcCCC---e
Confidence            9999999999999999976432   11111111110000000 00000000         0012222  3455433   2


Q ss_pred             eEEEEEccC-CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCC
Q 009027          327 TTYMFTYID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF  405 (546)
Q Consensus       327 ~~~l~~~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg  405 (546)
                      ..+.+.... .......-.+.+.+++.....    .....++.+.  ..++.......++..+||+|+|||||.++|+.|
T Consensus       230 ~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~--~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~G  303 (538)
T PRK06183        230 RRWEFMLLPGETEEQLASPENVWRLLAPWGP----TPDDAELIRH--AVYTFHARVADRWRSGRVLLAGDAAHLMPPFAG  303 (538)
T ss_pred             EEEEEEeCCCCChhhcCCHHHHHHHHHhhCC----CCcceEEEEE--EeeeEccEEhhhhccCCEEEEechhhcCCCccc
Confidence            223233211 111111112222333332210    0112222211  112222122346778999999999999999999


Q ss_pred             CcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       406 ~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ||+|++++|+..|++.|...++...    .-..|..|+
T Consensus       304 QG~n~gi~DA~~La~kLa~~~~g~~----~~~~L~~Ye  337 (538)
T PRK06183        304 QGMNSGIRDAANLAWKLAAVLRGRA----GDALLDTYE  337 (538)
T ss_pred             cchhhhHHHHHHHHHHHHHHHcCCC----cHHHHHHHH
Confidence            9999999999999999886654321    234678999

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.96  E-value=4e-26  Score=242.80  Aligned_cols=310  Identities=17%  Similarity=0.201  Sum_probs=181.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC---CCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~---~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      ++||+|||| ++|+++|+.|+++|++|+|+||++.+   +..+...+++++++.|+++|++++  +.+. ........+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~--l~~~-~~~~~~~~~~   78 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGER--MDRE-GLVHDGIELR   78 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHH--HHhc-CCccCcEEEE
Confidence            589999996 56999999999999999999999853   223444689999999999999754  2211 0011111111


Q ss_pred             ccCCc-cccccc----cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-eCCeEEEEEc-CCc--EEEcCEEEEe
Q 009027          186 FEGKG-EIWVED----ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLIIDA  256 (546)
Q Consensus       186 f~~~~-~l~~~~----~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V~~~-~g~--~i~ArlVV~A  256 (546)
                      +.+.. .+..+.    .....+++..+.+.|.+++.+.|++++.+++++++.. +++.+.|++. +|+  +++||+||+|
T Consensus        79 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgA  158 (392)
T PRK08243         79 FDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGC  158 (392)
T ss_pred             ECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEEC
Confidence            11100 011110    0112356778888899888888999999999999976 6677777773 563  7999999999


Q ss_pred             cCCChHHHHHhcCCCCC--Ceeee--EEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE
Q 009027          257 MGNFSPVVKQIRSGRKP--DGVCL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT  332 (546)
Q Consensus       257 DG~~S~vr~ql~~~~~~--~~~~~--~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~  332 (546)
                      ||.+|.+|++++.....  ....+  ..+.... .+ ....++++.        ..+.++.| .++.+.+   ...+++.
T Consensus       159 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~--------~~~~~~~~-~~~~~~~---~~~~~~~  224 (392)
T PRK08243        159 DGFHGVSRASIPAGALRTFERVYPFGWLGILAE-AP-PVSDELIYA--------NHERGFAL-CSMRSPT---RSRYYLQ  224 (392)
T ss_pred             CCCCCchhhhcCcchhhceecccCceEEEEeCC-CC-CCCCceEEe--------eCCCceEE-EecCCCC---cEEEEEE
Confidence            99999999998654211  11000  0011000 00 000011110        01234544 3443322   2222222


Q ss_pred             ccC-CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhh
Q 009027          333 YID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL  411 (546)
Q Consensus       333 ~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~  411 (546)
                      +.. ......+..+..+.+.+.++......+.......  ...+|.......++..+||+|||||||.++|++|||.|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~a  302 (392)
T PRK08243        225 CPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIE--KSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLA  302 (392)
T ss_pred             ecCCCCcccCChhHHHHHHHHhcCcccccccccCcccc--ccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHH
Confidence            211 1111112233333333333321100000000000  1123333333346677999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       412 lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ++|+..|++.|..+++.+.     ...|+.|+
T Consensus       303 i~Da~~La~~L~~~~~~~~-----~~~L~~Ye  329 (392)
T PRK08243        303 ASDVRYLARALVEFYREGD-----TALLDAYS  329 (392)
T ss_pred             HHHHHHHHHHHHHHhccCC-----HHHHHHHH
Confidence            9999999999988876431     34578999

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.95  E-value=3.1e-26  Score=243.04  Aligned_cols=311  Identities=17%  Similarity=0.184  Sum_probs=186.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhC---CCeEEEEcCCCCC-----C-CcccccCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFK---GLRVAIVERNTLK-----G-REQEWNISRKELLELVESGILVEDDIDEATATKF  179 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~---G~rVlLlEr~~~~-----~-~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~  179 (546)
                      .+||+|||| ++|+++|+.|+++   |++|+|+||....     + ..+...+++.+++.|+.+|++++..-........
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~   82 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI   82 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence            689999996 5699999999998   9999999996322     1 1245678999999999999986421110000000


Q ss_pred             ---CCC---cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCE
Q 009027          180 ---NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (546)
Q Consensus       180 ---~~~---~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~Arl  252 (546)
                         ...   ...+.. ..... ...++.+++..|++.|.+.+.+. |++++.+++++++..+++++.|+++++.+++|++
T Consensus        83 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~  160 (395)
T PRK05732         83 HVSDRGHAGFVRLDA-EDYGV-PALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRL  160 (395)
T ss_pred             EEecCCCCceEEeeh-hhcCC-CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence               000   011110 00111 12245688999999999988764 7899999999999888889999988888899999


Q ss_pred             EEEecCCChHHHHHhcCCCCCC---eeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027          253 IIDAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (546)
Q Consensus       253 VV~ADG~~S~vr~ql~~~~~~~---~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~  329 (546)
                      ||+|||.+|.++++++......   ..+.. ..+..  ........+....        ..+.++ .+|..++   ...+
T Consensus       161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~--------~~g~~~-~~p~~~g---~~~~  225 (395)
T PRK05732        161 LVAADGSHSALREALGIDWQQHPYEQVAVI-ANVTT--SEAHQGRAFERFT--------EHGPLA-LLPMSDG---RCSL  225 (395)
T ss_pred             EEEecCCChhhHHhhCCCccceecCCEEEE-EEEEe--cCCCCCEEEEeec--------CCCCEE-EeECCCC---CeEE
Confidence            9999999999999987653221   12211 11110  0000011110000        012233 5676655   2222


Q ss_pred             EEEccCCCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 009027          330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (546)
Q Consensus       330 l~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~  406 (546)
                      .+.......   ...+..+..+.+...++. .   +..+..... ...+|+....+.++..+|++|+|||||.++|++|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~-~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~Gq  300 (395)
T PRK05732        226 VWCHPLEDAEEVLSWSDAQFLAELQQAFGW-R---LGRITHAGK-RSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQ  300 (395)
T ss_pred             EEECCHHHHHHHHcCCHHHHHHHHHHHHHh-h---hcceeecCC-cceecccccchhhhccCcEEEEeecccccCCcccc
Confidence            222111000   001222333333222211 0   011100000 11234433334466789999999999999999999


Q ss_pred             cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |.|++++|+..|++.|..++..+. +......|+.|+
T Consensus       301 G~~~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~Y~  336 (395)
T PRK05732        301 GFNLGLRDVMSLAETLTQALARGE-DIGDYAVLQRYQ  336 (395)
T ss_pred             ccchHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHH
Confidence            999999999999999988876432 211235678899

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.95  E-value=7.3e-26  Score=240.02  Aligned_cols=290  Identities=18%  Similarity=0.195  Sum_probs=177.1

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCc-ccccCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR-CGFEGK  189 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~-v~f~~~  189 (546)
                      ||||||| ++|+++|+.|+++|++|+|||+++..+....|.++...++   ++++      +.++...+.... +.+.. 
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~-   70 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLS---DLGL------ADCVEHVWPDVYEYRFPK-   70 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhh---hhch------hhHHhhcCCCceEEecCC-
Confidence            8999996 5699999999999999999999875554556777665433   3342      122222222211 11111 


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhc
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR  268 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~  268 (546)
                      .....+. ....+++..|++.|.+++.+.|++++ .++++++..+ ++.+.|++++|++++|++||+|||.+|.+++.. 
T Consensus        71 ~~~~~~~-~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~-  147 (388)
T TIGR01790        71 QPRKLGT-AYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVR-  147 (388)
T ss_pred             cchhcCC-ceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhccccc-
Confidence            1111111 12358999999999999998999886 5578888776 667788887888999999999999999664322 


Q ss_pred             CCCCCCeeeeEEEEEee--ccCCCceeeeeccCCcccc-cC---CCCcceEEEEecCCCCCccceEEEEEccCCCC----
Q 009027          269 SGRKPDGVCLVVGSCAR--GFKDNSTSDVIYSSSSVKK-VG---DSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA----  338 (546)
Q Consensus       269 ~~~~~~~~~~~vg~~~~--~~~~~~~~~i~~~~~~i~~-~~---~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~----  338 (546)
                      .+... ......|...+  ..+......+++++..... .+   +.+..++| +||.+++    ..++ .......    
T Consensus       148 ~~~~~-~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~-~lP~~~~----~~~v-~~~~~~~~~~~  220 (388)
T TIGR01790       148 FPLNV-GFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLY-AMPLGST----RVFI-EETSLADRPAL  220 (388)
T ss_pred             CCCCc-eEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEE-EeecCCC----eEEE-EeccccCCCCC
Confidence            11111 11111222222  1110111123333211110 00   00123778 7998754    2222 1111111    


Q ss_pred             CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHH
Q 009027          339 GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL  418 (546)
Q Consensus       339 ~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~L  418 (546)
                      ....+++.+.+|++.++ +     ...++.+...+.+|+....  +...+|+++||||||.+||+||+|++.+++++..+
T Consensus       221 ~~~~~~~~l~~~~~~~g-~-----~~~~i~~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~l  292 (388)
T TIGR01790       221 PRDRLRQRILARLNAQG-W-----QIKTIEEEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGL  292 (388)
T ss_pred             CHHHHHHHHHHHHHHcC-C-----eeeEEEeeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHHHHHH
Confidence            11245566666665442 1     1122334456788986533  23679999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 009027          419 STGVYEAVRGD  429 (546)
Q Consensus       419 ae~I~~Al~~g  429 (546)
                      ++.|.++++.+
T Consensus       293 a~~l~~~~~~~  303 (388)
T TIGR01790       293 AAAIAQALCQS  303 (388)
T ss_pred             HHHHHHHhccC
Confidence            99999998765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK11445 putative oxidoreductase; Provisional

Probab=99.95  E-value=4.4e-26  Score=239.14  Aligned_cols=287  Identities=14%  Similarity=0.143  Sum_probs=171.6

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC----C-cccccCCHHHHHHHHHcCCCCccc-chhhhhhccCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG----R-EQEWNISRKELLELVESGILVEDD-IDEATATKFNPN  182 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~----~-~r~~~Is~~~l~~L~~lGl~~~~~-ie~~i~~~~~~~  182 (546)
                      +|||+|||| ++|+++|+.|+++ ++|+|+||++.+.    . +.+..++++.++.|+++|++.... +...  ..+...
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~--~~~~~~   77 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP--QIFAVK   77 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc--ccceee
Confidence            489999995 5799999999999 9999999987532    1 234579999999999999974321 1110  001111


Q ss_pred             cccccCCcccccc-ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecC
Q 009027          183 RCGFEGKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMG  258 (546)
Q Consensus       183 ~v~f~~~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~--~i~ArlVV~ADG  258 (546)
                      .+.+..  .+... ....+.++|..|+++|.+. .+.|++++.++.++++..+++++.|.+ ++|+  +++|++||+|||
T Consensus        78 ~~~~~~--~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG  154 (351)
T PRK11445         78 TIDLAN--SLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADG  154 (351)
T ss_pred             Eecccc--cchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCC
Confidence            111111  01000 1112469999999999985 467899999999999998889988886 4564  799999999999


Q ss_pred             CChHHHHHhcCCCCCCeeeeEEEEEeeccCCC---ceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccC
Q 009027          259 NFSPVVKQIRSGRKPDGVCLVVGSCARGFKDN---STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID  335 (546)
Q Consensus       259 ~~S~vr~ql~~~~~~~~~~~~vg~~~~~~~~~---~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~  335 (546)
                      .+|.+|++++........   ++.. +-+...   ....+++... .      ..+|.| .||..+.    ......+. 
T Consensus       155 ~~S~vr~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~f~~~-~------~~~~~W-~~p~~~~----~~~g~~~~-  217 (351)
T PRK11445        155 ANSMVRRHLYPDHQIRKY---VAIQ-QWFAEKHPVPFYSCIFDNE-I------TDCYSW-SISKDGY----FIFGGAYP-  217 (351)
T ss_pred             CCcHHhHHhcCCCchhhE---EEEE-EEecCCCCCCCcceEEecc-C------CCceEE-EeCCCCc----EEeccccc-
Confidence            999999998754322111   1111 111110   1111111111 1      247889 7888643    22111221 


Q ss_pred             CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCC-CccCCcEEEeCCCCCCCCCCCCCcchhhHhh
Q 009027          336 PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSFGGFGSLTRH  414 (546)
Q Consensus       336 ~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~-~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd  414 (546)
                       ........+.+.+++..+..    ..++.  .+...+.++....... ....+|++|||||||++||++|+|++.++++
T Consensus       218 -~~~~~~~~~~l~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~s  290 (351)
T PRK11445        218 -MKDGRERFETLKEKLSAFGF----QFGKP--VKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDS  290 (351)
T ss_pred             -ccchHHHHHHHHHHHHhccc----ccccc--cccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHh
Confidence             11111111112223322211    01111  0111122222111111 2235899999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 009027          415 LGRLSTGVYEAV  426 (546)
Q Consensus       415 ~~~Lae~I~~Al  426 (546)
                      +..|++.|.++.
T Consensus       291 a~~la~~l~~~~  302 (351)
T PRK11445        291 ARILSEVLNKQP  302 (351)
T ss_pred             HHHHHHHHHhcc
Confidence            999999886543

>PRK07538 hypothetical protein; Provisional

Probab=99.95  E-value=5.1e-26  Score=243.64  Aligned_cols=361  Identities=17%  Similarity=0.210  Sum_probs=209.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG-  188 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~-  188 (546)
                      ||+||||| +|+++|+.|+++|++|+|+||++.++.. ...+++++.++.|.++|+++.  +...   ......+.|.. 
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~--l~~~---~~~~~~~~~~~~   76 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDA--LDAI---GIRTRELAYFNR   76 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHH--HHhh---CCCCcceEEEcC
Confidence            89999965 6999999999999999999999866532 345788999999999999753  2211   11111111110 


Q ss_pred             -Cccccc-c------c-cccceeCHHHHHHHHHHHHHh-cCC-EEEeCceEEEEEEeCCeEEEEEcCC-----cEEEcCE
Q 009027          189 -KGEIWV-E------D-ILNLGVSPAKLIEIVKKRFIS-LGG-VIFEGYSVSSICTYENAAVLLLAEG-----KILSSHL  252 (546)
Q Consensus       189 -~~~l~~-~------~-~l~~~V~~~~L~~~L~~~a~~-~G~-~v~~~t~v~~i~~~~dgv~V~~~~g-----~~i~Arl  252 (546)
                       +..++. +      . ...+.++|..|++.|.+++.+ .|. +++.+++|+++..+++++++.+.++     ++++||+
T Consensus        77 ~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adl  156 (413)
T PRK07538         77 HGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDV  156 (413)
T ss_pred             CCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeE
Confidence             111110 0      0 012458999999999999876 475 6999999999998888877776542     4899999


Q ss_pred             EEEecCCChHHHHHhcCCC-CC--CeeeeEEEEEee-ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCC--C--c
Q 009027          253 IIDAMGNFSPVVKQIRSGR-KP--DGVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG--P--L  324 (546)
Q Consensus       253 VV~ADG~~S~vr~ql~~~~-~~--~~~~~~vg~~~~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g--~--~  324 (546)
                      ||+|||.+|.+|+++.... ++  .+.....+.+.. .+....  .++..       .. ..+.+. .||..+.  +  .
T Consensus       157 vIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~-------g~-~~~~~~-~~p~~~~~~~~g~  225 (413)
T PRK07538        157 LIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGR--SMVMA-------GH-LDGKLV-VYPISEPVDADGR  225 (413)
T ss_pred             EEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCC--cEEEE-------cC-CCCEEE-EEECCCCcccCCc
Confidence            9999999999999986443 11  111111111100 000000  00000       00 011122 3443321  0  0


Q ss_pred             cceEEEEEccCC---C------CCCccHHHHHHHHHHhCcc---ccccccCcceEeeeeeeeeccccCCC-CCccCCcEE
Q 009027          325 DRTTYMFTYIDP---Q------AGSPKLEELLERYWDLMPE---YQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRIL  391 (546)
Q Consensus       325 ~~~~~l~~~~~~---~------~~~~~l~~l~~~~~~~lp~---~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~~~~rvl  391 (546)
                      ....+.+.....   .      ......+++++.|-...+.   +... +...   .. ...+|++...+ .++..+|++
T Consensus       226 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~---~~-~~~~p~~~~~~~~~w~~grv~  300 (413)
T PRK07538        226 QLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPAL-IRAA---EA-IYEYPMVDRDPLPRWTRGRVT  300 (413)
T ss_pred             eEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHH-HhcC---cc-eeeccccccCCCCcccCCcEE
Confidence            011222211111   0      0112444554433222111   1111 0100   01 11346654332 356789999


Q ss_pred             EeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcchhH--HHHHHH
Q 009027          392 QFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKFGPL--AKTLGL  469 (546)
Q Consensus       392 LVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~~~~--~~~~~~  469 (546)
                      |||||||.++|++|||.|.+++|+..|++.|...   +.    .-..|+.|++    .+++.....+.....  ...+.+
T Consensus       301 LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~----~~~aL~~Ye~----~R~~~~~~~~~~s~~~~~~~~~~  369 (413)
T PRK07538        301 LLGDAAHPMYPVGSNGASQAILDARALADALAAH---GD----PEAALAAYEA----ERRPATAQIVLANRLNGPEGVLQ  369 (413)
T ss_pred             EEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CC----HHHHHHHHHH----HhhHHHHHHHHHhhhcChHHHHH
Confidence            9999999999999999999999999999988753   21    2345789993    223323222221111  000112


Q ss_pred             -HHhhCCCcHHHHHHhcChhhHHHHHHHHHHHHHHH
Q 009027          470 -VMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYT  504 (546)
Q Consensus       470 -~~~~~P~~l~~~~~~~g~~~~~~w~~~~~~~~~~~  504 (546)
                       .....|.-++.+.+.+...++.+++..|-.+..++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (413)
T PRK07538        370 LVEERAPGGFADIDDVISSAELEAIAARYKAAAGFA  405 (413)
T ss_pred             HHHhhCCCCccchhhcCCHHHHHHHHHHHHHhhCCC
Confidence             22357999999999999999999988776665443

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.95  E-value=2.2e-25  Score=250.12  Aligned_cols=326  Identities=17%  Similarity=0.163  Sum_probs=195.9

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHh-CCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhh---ccCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSF-KGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATAT---KFNPN  182 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~-~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~---~~~~~  182 (546)
                      .++||+|||| |+|+++|+.|++ .|++|.||||.+.+.. .+..+|++++++.|+++|++++..-+.....   -+.+.
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~  110 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD  110 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence            3799999995 579999999999 5999999999875533 3556799999999999999864211110000   01110


Q ss_pred             -----ccc----ccCCccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeCC---eEEEEEc-----
Q 009027          183 -----RCG----FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN---AAVLLLA-----  243 (546)
Q Consensus       183 -----~v~----f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d---gv~V~~~-----  243 (546)
                           .+.    +........+.. .+.+++..+++.|.+++.+.|+  ++..+++++++.++++   .|+|+++     
T Consensus       111 ~~~~~~i~r~~~~~~~~~~~~~~~-~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~  189 (634)
T PRK08294        111 PADPSTIVRTGRVQDTEDGLSEFP-HVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE  189 (634)
T ss_pred             CccccceeccccccccCCCCCCCc-cEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence                 000    000000000111 2468899999999999988775  7788999999987653   4777774     


Q ss_pred             -CC--cEEEcCEEEEecCCChHHHHHhcCCCC---CCeeeeEEEEEe-eccCCCceeeeeccCCcccccCCCCcceEEEE
Q 009027          244 -EG--KILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEA  316 (546)
Q Consensus       244 -~g--~~i~ArlVV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~  316 (546)
                       +|  ++++||+||||||.+|.||+++++...   .++.+.++.... ..+++......+.+        +.+..++  .
T Consensus       190 ~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~--------~~~g~~~--~  259 (634)
T PRK08294        190 HEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQS--------ASEGSIL--L  259 (634)
T ss_pred             CCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEec--------CCCceEE--E
Confidence             34  489999999999999999999987532   222222221111 12221111101110        0112333  3


Q ss_pred             ecCCCCCccceEEEEEccCC--CC----CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCc-----
Q 009027          317 FPAGSGPLDRTTYMFTYIDP--QA----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA-----  385 (546)
Q Consensus       317 fp~~~g~~~~~~~l~~~~~~--~~----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~-----  385 (546)
                      +|..++  ....+.+.....  ..    ...+.+++.+.+.+.++.+.. ....+.+    +..++.....+.++     
T Consensus       260 ~P~~~g--~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~-~~~~v~w----~s~y~i~~r~a~~f~~~~~  332 (634)
T PRK08294        260 IPREGG--YLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTL-DVKEVAW----WSVYEVGQRLTDRFDDVPA  332 (634)
T ss_pred             EECCCC--eEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCC-ceeEEeE----Eecccccceehhhcccccc
Confidence            566543  112222222110  00    123667777766554433211 1111111    12333322222233     


Q ss_pred             -----cCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhhhcCchhhhHHHHhhhcc
Q 009027          386 -----AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMKLGDPVLRPFLQDVIKF  460 (546)
Q Consensus       386 -----~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye~l~~~~~~~~~~d~~~~  460 (546)
                           ..+||+|+|||||.++|..|||+|.++.|+..|+..|...++. . +  .-..|+.|+    ..+++..+.++.+
T Consensus       333 ~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g-~-a--~~~lL~tYe----~ERrp~a~~li~~  404 (634)
T PRK08294        333 EEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSG-R-S--PPELLHTYS----AERQAIAQELIDF  404 (634)
T ss_pred             cccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcC-C-C--cHHHHHHHH----HHHHHHHHHHHHH
Confidence                 3589999999999999999999999999999999999888753 2 2  234678999    3456666666544

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.95  E-value=1.6e-25  Score=238.84  Aligned_cols=308  Identities=14%  Similarity=0.138  Sum_probs=180.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      +|+||||| +|+++|+.|+++|++|.|+||.+.++. .+...++++.++.|.++|++++.  ...   .+.+..+.+..+
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l--~~~---~~~~~~~~~~~g   78 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRL--SGT---GVTPKALYLMDG   78 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHH--hhc---ccCcceEEEecC
Confidence            69999965 699999999999999999999876543 35678999999999999998642  111   111111111110


Q ss_pred             cc-----------cccc--ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEc---CCcEEEcCE
Q 009027          190 GE-----------IWVE--DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHL  252 (546)
Q Consensus       190 ~~-----------l~~~--~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~---~g~~i~Arl  252 (546)
                      ..           ....  ....+.+++..|.+.|.+++.+. |++++.+++++++..++++++|++.   ++++++||+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adl  158 (400)
T PRK06475         79 RKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAY  158 (400)
T ss_pred             CCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCE
Confidence            00           0000  00113589999999999999764 7899999999999988888888763   345899999


Q ss_pred             EEEecCCChHHHHHhcCCC-CCCeeeeEEEEEe-eccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEE
Q 009027          253 IIDAMGNFSPVVKQIRSGR-KPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM  330 (546)
Q Consensus       253 VV~ADG~~S~vr~ql~~~~-~~~~~~~~vg~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l  330 (546)
                      ||+|||.+|.+|++++... .+.+.....+.+. ..++. ...+.+..........+.+ +.+. .+|..++.  ...++
T Consensus       159 vIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-~~~~-~~p~~~~~--~~~~~  233 (400)
T PRK06475        159 LIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPA-SFLSAMPEHKAVSAWLGNK-AHFI-AYPVKGGK--FFNFV  233 (400)
T ss_pred             EEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcch-hhhhhcccCCceEEEEcCC-CEEE-EEEccCCc--EEEEE
Confidence            9999999999999986432 1222211111111 11110 0000000000000000112 2222 46766441  22222


Q ss_pred             EEccCCC-C---CC-ccHHHHHHHHHHh-CccccccccCcceEeeeeeeeeccccCCCCCc-cCCcEEEeCCCCCCCCCC
Q 009027          331 FTYIDPQ-A---GS-PKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA-AFNRILQFGDASGIQSPV  403 (546)
Q Consensus       331 ~~~~~~~-~---~~-~~l~~l~~~~~~~-lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~-~~~rvlLVGDAA~~v~Pl  403 (546)
                      ....... .   .. .+..++ ..++.. .|.+... ++...   . +..+|++...+.++ ..+|++|||||||.++|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~-i~~~~---~-~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~  307 (400)
T PRK06475        234 AITGGENPGEVWSKTGDKAHL-KSIYADWNKPVLQI-LAAID---E-WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPF  307 (400)
T ss_pred             EEEcCCCCcccCCCCCCHHHH-HHHhcCCChHHHHH-HhcCC---c-eeECcCcccCCCcceecCCEEEEecccccCCch
Confidence            2111110 0   11 122222 222222 2222221 11111   1 12467665444454 458999999999999999


Q ss_pred             CCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          404 SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       404 sg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +|||.|++++|+..|++.|..    .  +.  ...|+.|+
T Consensus       308 ~GqG~n~aieDa~~La~~L~~----~--~~--~~aL~~Ye  339 (400)
T PRK06475        308 AAQGAAMAIEDAAALAEALDS----D--DQ--SAGLKRFD  339 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHhc----C--CH--HHHHHHHH
Confidence            999999999999999988742    1  11  24578999

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.95  E-value=5.2e-25  Score=244.14  Aligned_cols=309  Identities=16%  Similarity=0.145  Sum_probs=186.4

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~-~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .++||+|||| ++|+++|+.|+++|++|+||||++.+. ..+.+.+++++++.|+++|++++  +.+... .+......+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~--l~~~~~-~~~~~~~~~   98 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGER--MVDKGV-SWNVGKVFL   98 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHH--HHhhCc-eeeceeEEe
Confidence            4689999995 579999999999999999999997543 34677899999999999999753  211100 000000100


Q ss_pred             cCCc--------cccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEc--CCc-EEEcCEEE
Q 009027          187 EGKG--------EIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EGK-ILSSHLII  254 (546)
Q Consensus       187 ~~~~--------~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~--~g~-~i~ArlVV  254 (546)
                      .+..        .........+.+++..|++.|.+++.+. +++++.+++++++..+++++++++.  ++. +++|++||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vV  178 (547)
T PRK08132         99 RDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVI  178 (547)
T ss_pred             CCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEE
Confidence            1000        0000011123478889999999999876 6799999999999999898887764  344 79999999


Q ss_pred             EecCCChHHHHHhcCCCCC---CeeeeEEEEEee-ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEE
Q 009027          255 DAMGNFSPVVKQIRSGRKP---DGVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM  330 (546)
Q Consensus       255 ~ADG~~S~vr~ql~~~~~~---~~~~~~vg~~~~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l  330 (546)
                      +|||.+|.+|+++++....   .....++..... .++.  .....+. .+..     ...++| ++|..++   ...+.
T Consensus       179 gADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~--~~~~~~~-~~~~-----~~~~~~-~~~~~~~---~~~~~  246 (547)
T PRK08132        179 ACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPT--ERWFWFD-PPFH-----PGQSVL-LHRQPDN---VWRID  246 (547)
T ss_pred             ECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCC--eeeEEEe-ccCC-----CCcEEE-EEeCCCC---eEEEE
Confidence            9999999999999865321   111211111111 1110  0001111 0111     123444 4554432   22211


Q ss_pred             EEccC-CCCC-CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027          331 FTYID-PQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (546)
Q Consensus       331 ~~~~~-~~~~-~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~  408 (546)
                      +.... ..+. ....+++.+...+.++..     .+.++..  ...++.......++..+||+|+|||||.++|+.|||+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~--~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~  319 (547)
T PRK08132        247 FQLGWDADPEAEKKPENVIPRVRALLGED-----VPFELEW--VSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGA  319 (547)
T ss_pred             EecCCCCCchhhcCHHHHHHHHHHHcCCC-----CCeeEEE--EEeeeeeeeeecccccccEEEEecccccCCCcccccc
Confidence            21111 0111 112233333222223210     1111111  1223333333457788999999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       409 g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |++++|+..|+..|...++. . +  .-..|+.|+
T Consensus       320 n~gi~DA~~LawkLa~vl~g-~-~--~~~lL~~Ye  350 (547)
T PRK08132        320 NSGIQDADNLAWKLALVLRG-R-A--PDSLLDSYA  350 (547)
T ss_pred             cchHHHHHHHHHHHHHHHcC-C-C--cHHHHHHHH
Confidence            99999999999999887753 2 1  234678999

>PTZ00367 squalene epoxidase; Provisional

Probab=99.95  E-value=2.3e-25  Score=245.86  Aligned_cols=297  Identities=15%  Similarity=0.176  Sum_probs=169.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC--CCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL--KGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~--~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      +||||||||| +|+++|+.|+++|++|+|+||.++  +....+..++++.++.|+++|+++..  +.... ......+..
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l--~~i~~-~~~~~~v~~  109 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECA--EGIGM-PCFGYVVFD  109 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhH--hhcCc-ceeeeEEEE
Confidence            6999999965 699999999999999999999873  22223346999999999999998642  22111 111111111


Q ss_pred             cCCcccccc---ccccceeCHHHHHHHHHHHH---HhcCCEEEeCceEEEEEEeCC-------eEEEEEcC---------
Q 009027          187 EGKGEIWVE---DILNLGVSPAKLIEIVKKRF---ISLGGVIFEGYSVSSICTYEN-------AAVLLLAE---------  244 (546)
Q Consensus       187 ~~~~~l~~~---~~l~~~V~~~~L~~~L~~~a---~~~G~~v~~~t~v~~i~~~~d-------gv~V~~~~---------  244 (546)
                      ..+..+..+   ...+..+.+..|.+.|.+++   ...++++++ .+++++..+++       +++++..+         
T Consensus       110 ~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f  188 (567)
T PTZ00367        110 HKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPF  188 (567)
T ss_pred             CCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCccccccccc
Confidence            111111111   11234567888888888887   345778865 47887754433       35555443         


Q ss_pred             --------------CcEEEcCEEEEecCCChHHHHHhcCCCC-CCeeeeEEEEEeec--cCCCceeeeeccCCcccccCC
Q 009027          245 --------------GKILSSHLIIDAMGNFSPVVKQIRSGRK-PDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGD  307 (546)
Q Consensus       245 --------------g~~i~ArlVV~ADG~~S~vr~ql~~~~~-~~~~~~~vg~~~~~--~~~~~~~~i~~~~~~i~~~~~  307 (546)
                                    +++++|++||+|||.+|.+|++++...+ ++......+.....  .+....+.+++.         
T Consensus       189 ~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g---------  259 (567)
T PTZ00367        189 REDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLG---------  259 (567)
T ss_pred             ccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEc---------
Confidence                          4689999999999999999999975432 11111112222211  112222233221         


Q ss_pred             CCcceEEEEecCCCCCccceEEEEEccCCC-CCCccHHHHHHHHH-HhCcc-cccccc-CcceEeeeeeeeeccccCCCC
Q 009027          308 SEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-AGSPKLEELLERYW-DLMPE-YQGVTL-DNLEIQRVIYGIFPTYRDSPL  383 (546)
Q Consensus       308 ~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~-~~~~~l~~l~~~~~-~~lp~-~~~~~l-~~~~~~~~~~g~~P~~~~~~~  383 (546)
                       ..+.+| .+|.+++   ....+..+.... +......+.+.+.. ..+|+ ++.. + ..+.-... ...+|.....+.
T Consensus       260 -~~gpi~-~yPl~~~---~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~-f~~~l~~~~~-l~~~p~~~~p~~  332 (567)
T PTZ00367        260 -KTGPIL-SYRLDDN---ELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRES-FIRASKDTKR-IRSMPNARYPPA  332 (567)
T ss_pred             -CCceEE-EEEcCCC---eEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHH-HHHhhcccCC-eEEeeHhhCCCc
Confidence             134455 6888754   233333332211 10001111111111 01111 1100 0 00000000 112344443344


Q ss_pred             CccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHH
Q 009027          384 PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV  426 (546)
Q Consensus       384 ~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al  426 (546)
                      ++..+|++|+|||||++||++|||+|++++|+..|++.|..+.
T Consensus       333 ~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~  375 (567)
T PTZ00367        333 FPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIK  375 (567)
T ss_pred             cCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence            5677899999999999999999999999999999999987643

>PRK06753 hypothetical protein; Provisional

Probab=99.95  E-value=3.6e-25  Score=233.41  Aligned_cols=297  Identities=20%  Similarity=0.196  Sum_probs=179.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG-  188 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~-  188 (546)
                      ||+||||| +|+++|..|+++|++|+|+||++.++.. +.+.++++.++.|+.+|+++.  +..   .......+.+.. 
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~--~~~---~~~~~~~~~~~~~   76 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKG--IKN---AGQILSTMNLLDD   76 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHH--HHh---cCCcccceeEEcC
Confidence            79999965 6999999999999999999999876533 456799999999999998743  111   101111111110 


Q ss_pred             -Ccc---cc-ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          189 -KGE---IW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       189 -~~~---l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                       +..   +. .....++.|++..|++.|.+.+.  ..+++.+++++++..+++++.|++++|+++++++||+|||.+|.+
T Consensus        77 ~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753         77 KGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             CCCEEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence             111   00 01123467999999999998875  358999999999998888999999889899999999999999999


Q ss_pred             HHHhcCCCCCCe--eeeEEEEEee-ccCC-CceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCC-C
Q 009027          264 VKQIRSGRKPDG--VCLVVGSCAR-GFKD-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-A  338 (546)
Q Consensus       264 r~ql~~~~~~~~--~~~~vg~~~~-~~~~-~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~-~  338 (546)
                      |++++...+...  .....+.... ..+. ....+.+          + ..+.+| ++|..++    ..+++...... .
T Consensus       155 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~-~~g~~~-~~p~~~~----~~~~~~~~~~~~~  218 (373)
T PRK06753        155 RQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYW----------G-TKGRFG-IVPLLNN----QAYWFITINAKER  218 (373)
T ss_pred             HHHhCCCCCceEcceEEEEEEeccccccCccceEEEE----------c-CCCEEE-EEEcCCC----eEEEEEEeccccC
Confidence            999875432211  1101111110 0000 0000111          0 134566 6777654    22222221111 0


Q ss_pred             --C-C-ccHHHHHHHHHHh-CccccccccCcceEeeeeeeeeccccCC-CCCccCCcEEEeCCCCCCCCCCCCCcchhhH
Q 009027          339 --G-S-PKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSPVSFGGFGSLT  412 (546)
Q Consensus       339 --~-~-~~l~~l~~~~~~~-lp~~~~~~l~~~~~~~~~~g~~P~~~~~-~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~l  412 (546)
                        . . ....++ .+++.. .+.++.. ++.... .... ..+.+... ..++..+|++|||||||.++|++|+|.|+++
T Consensus       219 ~~~~~~~~~~~l-~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai  294 (373)
T PRK06753        219 DPKYSSFGKPHL-QAYFNHYPNEVREI-LDKQSE-TGIL-HHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAM  294 (373)
T ss_pred             CcccccccHHHH-HHHHhcCChHHHHH-HHhCCc-ccce-eeccccccccccccCCCEEEEecccccCCCCcCccHHHHH
Confidence              0 1 111222 223222 2222221 111100 0000 12222221 2356779999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       413 rd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +|+..|++.|..    .  +  .-+.|+.|+
T Consensus       295 ~Da~~L~~~L~~----~--~--~~~al~~Y~  317 (373)
T PRK06753        295 EDAIVLANCLNA----Y--D--FEKALQRYD  317 (373)
T ss_pred             HHHHHHHHHhhh----c--c--HHHHHHHHH
Confidence            999999987742    1  1  134578899

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.94  E-value=1.4e-24  Score=230.98  Aligned_cols=307  Identities=15%  Similarity=0.143  Sum_probs=172.1

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC---CcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~---~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      .+||+||||| +|+++|+.|+++|++|+|+||++.+.   ..+...+++++++.|+++|++++  +...   ......+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~--l~~~---~~~~~~~~   76 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDER--MDRE---GLVHEGTE   76 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHH--HHhc---CceecceE
Confidence            4899999965 69999999999999999999998532   23445689999999999999864  2211   11111111


Q ss_pred             cc-CCc--ccccccc---cc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-eCCeEEEEEc-CCc--EEEcCEEE
Q 009027          186 FE-GKG--EIWVEDI---LN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLII  254 (546)
Q Consensus       186 f~-~~~--~l~~~~~---l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V~~~-~g~--~i~ArlVV  254 (546)
                      +. ++.  .+..+..   .. ....+..+.+.|.+++.+.|++++.+++++.+.. +++.+.|++. +|+  +++||+||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI  156 (390)
T TIGR02360        77 IAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA  156 (390)
T ss_pred             EeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence            11 110  0111100   01 1234667889999998888999999988877754 5567777775 665  79999999


Q ss_pred             EecCCChHHHHHhcCCCCC--Ceeee--EEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEE
Q 009027          255 DAMGNFSPVVKQIRSGRKP--DGVCL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM  330 (546)
Q Consensus       255 ~ADG~~S~vr~ql~~~~~~--~~~~~--~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l  330 (546)
                      +|||.+|.||++++....+  .+...  ..+.... .+ .....+++.        +.+.++.+  +|..++.  ...+.
T Consensus       157 GADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~--------~~~~~~~~--~~~~~~~--~~~~~  222 (390)
T TIGR02360       157 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSE-TP-PVSHELIYS--------NHERGFAL--CSMRSAT--RSRYY  222 (390)
T ss_pred             ECCCCchhhHHhcCcccceeeeccCCcceEEEecC-CC-CCCCceEEE--------eCCCceEE--EeccCCC--cceEE
Confidence            9999999999997543211  11000  0011100 00 000001100        00122222  2322110  11111


Q ss_pred             EEccCCCC-CCccHHHHHHHHHHhCc-cccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027          331 FTYIDPQA-GSPKLEELLERYWDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (546)
Q Consensus       331 ~~~~~~~~-~~~~l~~l~~~~~~~lp-~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~  408 (546)
                      +....... .......+.+...+.++ .+..........   .....|+......++..+|++|+|||||.++|+.|||.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~  299 (390)
T TIGR02360       223 VQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSI---EKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGL  299 (390)
T ss_pred             EEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCcc---ceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCch
Confidence            11111000 00011112222222221 111110000000   01233443333446778999999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       409 g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |++++|+..|++.|..+...+     .-..|+.|+
T Consensus       300 n~aieDA~~La~~L~~~~~~~-----~~~al~~Y~  329 (390)
T TIGR02360       300 NLAASDVHYLYEALLEHYQEG-----SSAGIEGYS  329 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhccC-----hHHHHHHHH
Confidence            999999999999997765422     123567898

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07588 hypothetical protein; Provisional

Probab=99.94  E-value=5.9e-25  Score=233.53  Aligned_cols=304  Identities=15%  Similarity=0.093  Sum_probs=175.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC-
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG-  188 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~-  188 (546)
                      ||+||||| +|+++|+.|+++|++|+|+||.+..+. ...+.+++..++.|+++|++++  +.+   ..+....+.+.. 
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~--l~~---~~~~~~~~~~~~~   76 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQ--LRE---AGYQIEHVRSVDP   76 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHH--HHh---ccCCccceEEEcC
Confidence            79999965 699999999999999999999876543 2456788889999999999753  211   111111111111 


Q ss_pred             -Ccc---cc---ccccc---cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          189 -KGE---IW---VEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       189 -~~~---l~---~~~~l---~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                       +..   +.   .....   .+.+.+..|.+.|.+++. .|++++.+++|+++..++++++|++++|++++|++||+|||
T Consensus        77 ~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG  155 (391)
T PRK07588         77 TGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG  155 (391)
T ss_pred             CCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence             000   00   00111   146889999999988664 47899999999999998999999998998999999999999


Q ss_pred             CChHHHHHhcCCCC-CCe-eeeEEEEE-eeccC--CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEc
Q 009027          259 NFSPVVKQIRSGRK-PDG-VCLVVGSC-ARGFK--DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY  333 (546)
Q Consensus       259 ~~S~vr~ql~~~~~-~~~-~~~~vg~~-~~~~~--~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~  333 (546)
                      .+|.+|+++..... +.. ....+..+ ...+.  .......+.         + ...++. .+|..++   ...+++..
T Consensus       156 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~-~g~~~~-~~p~~~~---~~~~~~~~  221 (391)
T PRK07588        156 LHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYN---------E-VGRQVA-RVALRGD---RTLFLFIF  221 (391)
T ss_pred             CCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEe---------C-CCCEEE-EEecCCC---CeEEEEEE
Confidence            99999997643221 111 11011010 11111  000001110         0 011222 4565544   22233322


Q ss_pred             cCCCC----CCccHHHHHHHHHHh-CccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027          334 IDPQA----GSPKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (546)
Q Consensus       334 ~~~~~----~~~~l~~l~~~~~~~-lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~  408 (546)
                      .....    ......+.+.+.+.. .+....+ ++.+...... .+.+.......++..+|++|+|||||.++|+.|||.
T Consensus       222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~  299 (391)
T PRK07588        222 RAEHDNPPLTPAEEKQLLRDQFGDVGWETPDI-LAALDDVEDL-YFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGS  299 (391)
T ss_pred             EcCCccccCCHHHHHHHHHHHhccCCccHHHH-HHhhhcccch-heeeeeeeccCccccCCEEEEEccccCCCCccCCcH
Confidence            11111    111222223222221 1111111 0111000000 011111112235678999999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       409 g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |++++|+..|++.|..+.  +  +  ....|+.|+
T Consensus       300 n~aieDa~~La~~L~~~~--~--~--~~~al~~Y~  328 (391)
T PRK07588        300 GLAITEAYVLAGELARAG--G--D--HRRAFDAYE  328 (391)
T ss_pred             HHHHHHHHHHHHHHHhcc--C--C--HHHHHHHHH
Confidence            999999999998886422  1  1  224578899

>PLN02985 squalene monooxygenase

Probab=99.94  E-value=1.1e-23  Score=231.17  Aligned_cols=312  Identities=16%  Similarity=0.193  Sum_probs=173.5

Q ss_pred             CCCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC-CCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcc
Q 009027          107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRC  184 (546)
Q Consensus       107 ~~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~-~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v  184 (546)
                      ...+|||+||||| +|+++|+.|+++|++|+|+||... +.......++++.++.|+++|+++.  ++...........+
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~--l~~~~~~~~~~~~v  117 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDC--LEGIDAQKATGMAV  117 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcch--hhhccCcccccEEE
Confidence            3447999999965 699999999999999999999753 2222344688999999999999874  22211111110011


Q ss_pred             cccCCcc--cccc--------ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCe---EEEEEcCCc--EE
Q 009027          185 GFEGKGE--IWVE--------DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA---AVLLLAEGK--IL  248 (546)
Q Consensus       185 ~f~~~~~--l~~~--------~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg---v~V~~~~g~--~i  248 (546)
                       +.++..  +..+        ...++.+++.+|.+.|.+++.+. ++++.++ +++++..+++.   +++...+|+  ++
T Consensus       118 -~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~  195 (514)
T PLN02985        118 -YKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTA  195 (514)
T ss_pred             -EECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEE
Confidence             011111  0000        12346789999999999999876 5677755 57776655543   333334554  57


Q ss_pred             EcCEEEEecCCChHHHHHhcCCCCCCeeeeEEEEEeec--cCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027          249 SSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (546)
Q Consensus       249 ~ArlVV~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~--~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~  326 (546)
                      +|++||+|||.+|.+|++++...+...... ++.....  .+......+++.          ..+.+. .+|..++   .
T Consensus       196 ~AdLVVgADG~~S~vR~~l~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~l-~ypi~~~---~  260 (514)
T PLN02985        196 LAPLTVVCDGCYSNLRRSLNDNNAEVLSYQ-VGYISKNCRLEEPEKLHLIMS----------KPSFTM-LYQISST---D  260 (514)
T ss_pred             ECCEEEECCCCchHHHHHhccCCCcceeEe-EEEEEccccCCCCCcceEEcC----------CCceEE-EEEeCCC---e
Confidence            899999999999999999975433211111 1111111  111111222221          012222 4566544   2


Q ss_pred             eEEEEEccCCC-CC--CccHHHHHHHHH-HhCc-ccccc---ccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCC
Q 009027          327 TTYMFTYIDPQ-AG--SPKLEELLERYW-DLMP-EYQGV---TLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG  398 (546)
Q Consensus       327 ~~~l~~~~~~~-~~--~~~l~~l~~~~~-~~lp-~~~~~---~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~  398 (546)
                      ...+....... +.  +..+.+.+++.. ..+| .+++.   ..++..    .....|...........+|++|+|||||
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~----~~~~~p~~~l~~~~~~~~~vvLiGDAaH  336 (514)
T PLN02985        261 VRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGA----HIKVVPTKRMSATLSDKKGVIVLGDAFN  336 (514)
T ss_pred             EEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhccccc----ceeecCcccccccccCCCCEEEEecccc
Confidence            22222221111 10  112222222211 1111 11110   001100    0112343332222345689999999999


Q ss_pred             CCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhh-HHHHhhhh
Q 009027          399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYS-LSLLNPYM  443 (546)
Q Consensus       399 ~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~-l~~L~~Ye  443 (546)
                      ++||++|||.++++.|+..|++.|...-.  ..+.++ .+.|+.|+
T Consensus       337 ~~~P~~GQGmn~AleDA~vLa~lL~~~~~--~~~~~~~~~aL~~y~  380 (514)
T PLN02985        337 MRHPAIASGMMVLLSDILILRRLLQPLSN--LGNANKVSEVIKSFY  380 (514)
T ss_pred             cCCCCccccHhHHHHHHHHHHHHhhhccc--ccchhHHHHHHHHHH
Confidence            99999999999999999999999876311  012222 35678898

>PRK05868 hypothetical protein; Validated

Probab=99.94  E-value=1.7e-24  Score=228.88  Aligned_cols=302  Identities=17%  Similarity=0.121  Sum_probs=175.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc-
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE-  187 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~-  187 (546)
                      .||+||||| +|+++|+.|+++|++|+|+||++.++.. ....+++..++.|+++|+++.  +++. ....  ..+.|. 
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~--~~~~-~~~~--~~~~~~~   76 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAA--AQEH-KTRI--RGASFVD   76 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHH--HHhh-ccCc--cceEEEe
Confidence            489999965 6999999999999999999999876643 335678889999999999753  2211 1011  011110 


Q ss_pred             -CCcccc-------ccc---cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEe
Q 009027          188 -GKGEIW-------VED---ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (546)
Q Consensus       188 -~~~~l~-------~~~---~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~A  256 (546)
                       .+..+.       ...   ...+.+.+..|.+.|.+.+ ..|++++.++++++++.++++++|++++|++++|++||+|
T Consensus        77 ~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgA  155 (372)
T PRK05868         77 RDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGA  155 (372)
T ss_pred             CCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEEC
Confidence             000000       000   0124577888888776543 5689999999999999888899999999999999999999


Q ss_pred             cCCChHHHHHhcCCCC-CCe-eeeEE--EEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE
Q 009027          257 MGNFSPVVKQIRSGRK-PDG-VCLVV--GSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT  332 (546)
Q Consensus       257 DG~~S~vr~ql~~~~~-~~~-~~~~v--g~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~  332 (546)
                      ||.+|.+|+++..... +.. .....  ..+....+.+....++.         +.+. .+. ++|..++.  ....++.
T Consensus       156 DG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------g~~~-~~~-~~~~~~~~--~~~~~~~  222 (372)
T PRK05868        156 DGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHY---------GDST-MAG-VYSARNNT--EARAALA  222 (372)
T ss_pred             CCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEe---------cCCc-EEE-EEecCCCC--ceEEEEE
Confidence            9999999999854321 111 10000  00000000000001111         1111 222 45555331  2222222


Q ss_pred             ccCCC--CC---Cc-cHHHHHHHHHHh---CccccccccCcceEeeeeeeeec-cccCCCCCccCCcEEEeCCCCCCCCC
Q 009027          333 YIDPQ--AG---SP-KLEELLERYWDL---MPEYQGVTLDNLEIQRVIYGIFP-TYRDSPLPAAFNRILQFGDASGIQSP  402 (546)
Q Consensus       333 ~~~~~--~~---~~-~l~~l~~~~~~~---lp~~~~~~l~~~~~~~~~~g~~P-~~~~~~~~~~~~rvlLVGDAA~~v~P  402 (546)
                      +....  .+   .+ ..+++.+.|...   .+.+... +....  .   -+++ +......+++.+||+|+|||||.++|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~-~~~~~--~---~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P  296 (372)
T PRK05868        223 FMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHY-MRSAP--D---FYFDEMSQILMDRWSRGRVALVGDAGYCCSP  296 (372)
T ss_pred             EecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhh-cccCC--c---eeeccceEEecCCCCCCCeeeeecccccCCC
Confidence            22111  01   11 233344443211   1222111 01100  0   0122 22112236678999999999999999


Q ss_pred             CCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       403 lsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ++|||.|+++.|+..|++.|...  .+  +  --..|+.||
T Consensus       297 ~~GqGa~~AleDa~~La~~L~~~--~~--~--~~~al~~ye  331 (372)
T PRK05868        297 LSGQGTSVALLGAYILAGELKAA--GD--D--YQLGFANYH  331 (372)
T ss_pred             ccCccHHHHHHHHHHHHHHHHhc--CC--C--HHHHHHHHH
Confidence            99999999999999999988542  11  1  123568899

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.94  E-value=1.9e-24  Score=229.67  Aligned_cols=308  Identities=14%  Similarity=0.132  Sum_probs=186.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      ..||+||||| +|+++|..|+++|++|+|+||.+.++.. +...++++.++.|+.+|+++..  .+.   ......+.+.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~--~~~---~~~~~~~~~~   78 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAA--RQR---AVFTDHLTMM   78 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHH--Hhh---ccCCcceEEE
Confidence            5799999965 6999999999999999999999876543 3457889999999999997542  111   1111111111


Q ss_pred             C---Ccc---cccc----ccc---cceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEE
Q 009027          188 G---KGE---IWVE----DIL---NLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (546)
Q Consensus       188 ~---~~~---l~~~----~~l---~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlV  253 (546)
                      .   +..   +...    ..+   ...+++..|.+.|.+++.+.+ ++++.+++++++..+++++.|.+.+|++++|++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v  158 (396)
T PRK08163         79 DAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDAL  158 (396)
T ss_pred             eCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEE
Confidence            0   000   0000    001   135899999999999998775 7999999999999888889998888889999999


Q ss_pred             EEecCCChHHHHHhcCC-CCCCeeeeEEEEEe-eccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEE
Q 009027          254 IDAMGNFSPVVKQIRSG-RKPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF  331 (546)
Q Consensus       254 V~ADG~~S~vr~ql~~~-~~~~~~~~~vg~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~  331 (546)
                      |+|||.+|.+|+++... ..+.+.....+... ..++.. .     .........+ ...++| .||..++.  ...+++
T Consensus       159 V~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~-~-----~~~~~~~~~g-~~~~~~-~~p~~~g~--~~~~~~  228 (396)
T PRK08163        159 IGCDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPED-L-----RINAPVLWAG-PHCHLV-HYPLRGGE--QYNLVV  228 (396)
T ss_pred             EECCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcch-h-----ccCccEEEEc-CCceEE-EEEecCCe--EEEEEE
Confidence            99999999999987322 12222111111111 011100 0     0000000001 123445 57776541  222222


Q ss_pred             EccCCCC-----CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCC-CCccCCcEEEeCCCCCCCCCCCC
Q 009027          332 TYIDPQA-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSPVSF  405 (546)
Q Consensus       332 ~~~~~~~-----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~~~~rvlLVGDAA~~v~Plsg  405 (546)
                      .+.....     ...+.+++.+.|....|.+... ++...    .+..++.+...+ .++..+|++|+|||||.++|++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~G  303 (396)
T PRK08163        229 TFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQM-LDKPT----SWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMA  303 (396)
T ss_pred             EECCCCCcccccCCCCHHHHHHHHcCCChHHHHH-HhcCC----ceeEccccCCCcccccccCcEEEEecccccCCcchh
Confidence            2211110     1124455555554445544332 11111    011122222112 25667999999999999999999


Q ss_pred             CcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       406 ~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ||.|++++|+..|++.|...  .+  +  --..|+.|+
T Consensus       304 qG~n~ai~Da~~La~~L~~~--~~--~--~~~al~~y~  335 (396)
T PRK08163        304 QGACMALEDAVTLGKALEGC--DG--D--AEAAFALYE  335 (396)
T ss_pred             ccHHHHHHHHHHHHHHHHhc--cc--c--HHHHHHHHH
Confidence            99999999999999887542  11  1  124578899

>PRK06126 hypothetical protein; Provisional

Probab=99.94  E-value=1.8e-24  Score=239.80  Aligned_cols=309  Identities=15%  Similarity=0.175  Sum_probs=181.6

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhh-hcc------
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA-TKF------  179 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~-~~~------  179 (546)
                      .++||+|||| ++|+++|+.|+++|++|+|+||++.+.. .+...+++++++.|+++|++++  +.+.-. ..+      
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~--l~~~g~~~~~~~~~~~   83 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADE--VRSAGLPVDYPTDIAY   83 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHH--HHhhcCCccccCCceE
Confidence            3689999996 5699999999999999999999876543 4567799999999999999754  221100 000      


Q ss_pred             ----CCC---cccccCCcc-c---------cccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEE
Q 009027          180 ----NPN---RCGFEGKGE-I---------WVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLL  241 (546)
Q Consensus       180 ----~~~---~v~f~~~~~-l---------~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~  241 (546)
                          ...   .+.+..... .         +......+.+++..|++.|.+++.+. |++++++++|+++..++++++++
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~  163 (545)
T PRK06126         84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTAT  163 (545)
T ss_pred             EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEE
Confidence                000   011100000 0         00011235688999999999999765 78999999999999988888877


Q ss_pred             Ec---CCc--EEEcCEEEEecCCChHHHHHhcCCCCCCe-eeeEEEEEee--ccCC---CceeeeeccCCcccccCCCCc
Q 009027          242 LA---EGK--ILSSHLIIDAMGNFSPVVKQIRSGRKPDG-VCLVVGSCAR--GFKD---NSTSDVIYSSSSVKKVGDSEV  310 (546)
Q Consensus       242 ~~---~g~--~i~ArlVV~ADG~~S~vr~ql~~~~~~~~-~~~~vg~~~~--~~~~---~~~~~i~~~~~~i~~~~~~~~  310 (546)
                      +.   +|+  +++|++||+|||.+|.||+++++...-.. ....+.....  ....   .......+...|       + 
T Consensus       164 ~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p-------~-  235 (545)
T PRK06126        164 VEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNP-------D-  235 (545)
T ss_pred             EEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECC-------C-
Confidence            64   353  79999999999999999999986532111 0001111111  0000   000000000000       0 


Q ss_pred             ceEEEEecCCCCCccceEEEEE-ccCCCCC-CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCC
Q 009027          311 QLFWEAFPAGSGPLDRTTYMFT-YIDPQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFN  388 (546)
Q Consensus       311 ~~~W~~fp~~~g~~~~~~~l~~-~~~~~~~-~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~  388 (546)
                      .... +++....    ..+.+. +...... ..+-.+..+.+.+.++.  ..   ..++...  ..++.......++..+
T Consensus       236 ~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~i~~~--~~w~~~~~~a~~~~~g  303 (545)
T PRK06126        236 RRGV-LVAIDGR----DEWLFHQLRGGEDEFTIDDVDARAFVRRGVGE--DI---DYEVLSV--VPWTGRRLVADSYRRG  303 (545)
T ss_pred             ccEE-EEEECCC----CeEEEEEecCCCCCCCCCHHHHHHHHHHhcCC--CC---CeEEEee--cccchhheehhhhccC
Confidence            0111 1222211    112222 1111111 11222222222222221  11   1111111  1233333344577889


Q ss_pred             cEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          389 RILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       389 rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ||+|+|||||.++|+.|||+|+++.|+..|+..|...++. . +  ....|+.|+
T Consensus       304 Rv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~-~-~--~~~lL~~Y~  354 (545)
T PRK06126        304 RVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG-W-A--GPALLDSYE  354 (545)
T ss_pred             CEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC-C-C--cHHHHhhhH
Confidence            9999999999999999999999999999999999877643 1 1  235678999

>PRK07236 hypothetical protein; Provisional

Probab=99.93  E-value=8.6e-24  Score=224.39  Aligned_cols=151  Identities=19%  Similarity=0.199  Sum_probs=108.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcc--cccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r--~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .+||+||||| +|+++|..|+++|++|+|+||.+.+...+  ...++++.++.|+++|+++..+.      .+......+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~------~~~~~~~~~   79 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADI------GVPSRERIY   79 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccc------ccCccceEE
Confidence            5899999965 69999999999999999999987543232  34578999999999999754211      111111111


Q ss_pred             cC--CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          187 EG--KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       187 ~~--~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                      ..  +..+.........+.+..+.+.|.+.+  .+++++.+++|+++..++++++|++++|++++|++||+|||.+|.+|
T Consensus        80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR  157 (386)
T PRK07236         80 LDRDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVR  157 (386)
T ss_pred             EeCCCCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHH
Confidence            11  111111011112346677888877654  24589999999999999999999999999999999999999999999


Q ss_pred             HHhc
Q 009027          265 KQIR  268 (546)
Q Consensus       265 ~ql~  268 (546)
                      +++.
T Consensus       158 ~~l~  161 (386)
T PRK07236        158 AQLL  161 (386)
T ss_pred             HHhC
Confidence            9984

>PRK06847 hypothetical protein; Provisional

Probab=99.93  E-value=2e-23  Score=220.14  Aligned_cols=304  Identities=18%  Similarity=0.160  Sum_probs=180.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      ..||+||||| +|+++|+.|+++|++|+|+||.+.++.. ....++++.++.|+++|+++.  +   ....+....+.+.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~--~---~~~~~~~~~~~~~   78 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDE--C---LEAGFGFDGVDLF   78 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHH--H---HHhCCCccceEEE
Confidence            5799999965 6999999999999999999998765432 334688999999999998643  1   1111111111111


Q ss_pred             C--Ccc--------ccccc-cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEe
Q 009027          188 G--KGE--------IWVED-ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (546)
Q Consensus       188 ~--~~~--------l~~~~-~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~A  256 (546)
                      .  +..        ...+. .....+++..|.+.|.+.+.+.|++++.+++++++..+++++.|.+.+|++++|++||+|
T Consensus        79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~A  158 (375)
T PRK06847         79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGA  158 (375)
T ss_pred             CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEEC
Confidence            0  000        00000 112468899999999999988899999999999999888889898888889999999999


Q ss_pred             cCCChHHHHHhc-CCCCCC--eeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEc
Q 009027          257 MGNFSPVVKQIR-SGRKPD--GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY  333 (546)
Q Consensus       257 DG~~S~vr~ql~-~~~~~~--~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~  333 (546)
                      ||.+|.+|+++. ....+.  +.....+.. ...+......++.         + ....+. .+|..++    ..+++..
T Consensus       159 dG~~s~~r~~l~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~---------~-~~~~~~-~~p~~~~----~~~~~~~  222 (375)
T PRK06847        159 DGLYSKVRSLVFPDEPEPEYTGQGVWRAVL-PRPAEVDRSLMYL---------G-PTTKAG-VVPLSED----LMYLFVT  222 (375)
T ss_pred             cCCCcchhhHhcCCCCCceeccceEEEEEe-cCCCCccceEEEe---------C-CCcEEE-EEcCCCC----eEEEEEe
Confidence            999999999873 221111  111000100 0000000000110         0 112222 4565543    2223322


Q ss_pred             cCC-CCC---CccHHHHHHHHHHhCcc--ccccccCcceEeeeeeeeeccccCC-CCCccCCcEEEeCCCCCCCCCCCCC
Q 009027          334 IDP-QAG---SPKLEELLERYWDLMPE--YQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSPVSFG  406 (546)
Q Consensus       334 ~~~-~~~---~~~l~~l~~~~~~~lp~--~~~~~l~~~~~~~~~~g~~P~~~~~-~~~~~~~rvlLVGDAA~~v~Plsg~  406 (546)
                      ... ...   ...+.+.+++.+...+.  .+.. .+.+.-... ....|.+... +.++..+|++|+|||||.++|++||
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~Gq  300 (375)
T PRK06847        223 EPRPDNPRIEPDTLAALLRELLAPFGGPVLQEL-REQITDDAQ-VVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQ  300 (375)
T ss_pred             ccCcccccCChHHHHHHHHHHHhhcCchHHHHH-HHhcCCccc-eeeccHhhccCCCCccCCeEEEEechhccCCCCccc
Confidence            111 100   11233333333332221  1111 011100011 1133443321 2357789999999999999999999


Q ss_pred             cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |.|.+++|+..|++.|...    . +  .-..|+.|+
T Consensus       301 G~n~aieDA~~La~~L~~~----~-~--~~~al~~Y~  330 (375)
T PRK06847        301 GAGMAIEDAIVLAEELARH----D-S--LEAALQAYY  330 (375)
T ss_pred             cHHHHHHHHHHHHHHHhhC----C-c--HHHHHHHHH
Confidence            9999999999999887541    1 1  234578899

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.92  E-value=9e-23  Score=227.00  Aligned_cols=315  Identities=20%  Similarity=0.193  Sum_probs=178.2

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CC-c---ccccCCHHHHHHHHHcCCCCcccchhhhh-h--c-
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GR-E---QEWNISRKELLELVESGILVEDDIDEATA-T--K-  178 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~-~~-~---r~~~Is~~~l~~L~~lGl~~~~~ie~~i~-~--~-  178 (546)
                      ..++|+||||| +|+++|+.|+++|++|.|+||.+.. +. .   +...|+++.++.|+++|++...++.+... .  . 
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i  159 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI  159 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence            36899999975 6999999999999999999997632 11 1   34679999999999999753322221100 0  0 


Q ss_pred             --c-C--CCc--ccccCCccc-cccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEE
Q 009027          179 --F-N--PNR--CGFEGKGEI-WVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILS  249 (546)
Q Consensus       179 --~-~--~~~--v~f~~~~~l-~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~V~~~~g~~i~  249 (546)
                        + .  .+.  +.|...... .......+.|+|..|++.|.+++   +. .++.+++|+++..++++++|++++|++++
T Consensus       160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~  236 (668)
T PLN02927        160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAV---GEDVIRNESNVVDFEDSGDKVTVVLENGQRYE  236 (668)
T ss_pred             eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEEeCCEEEEEECCCCEEE
Confidence              0 0  000  111100000 00011235789999999997654   33 46788999999999999999998998999


Q ss_pred             cCEEEEecCCChHHHHHhcCCCCC--CeeeeEEEEEeeccCC--CceeeeeccCCcccccCCCCcceEEEEecCCCCCcc
Q 009027          250 SHLIIDAMGNFSPVVKQIRSGRKP--DGVCLVVGSCARGFKD--NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD  325 (546)
Q Consensus       250 ArlVV~ADG~~S~vr~ql~~~~~~--~~~~~~vg~~~~~~~~--~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~  325 (546)
                      |++||+|||.+|.+|+++....++  .+.+...+.+ ...+.  .......+        .+ ..+++- .++..++  .
T Consensus       237 aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~-~~~p~~~~~~~~~~~--------~G-~~~~~v-~~~v~~g--~  303 (668)
T PLN02927        237 GDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIA-DFIPADIESVGYRVF--------LG-HKQYFV-SSDVGGG--K  303 (668)
T ss_pred             cCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEc-CCCcccccccceEEE--------Ec-CCeEEE-EEcCCCC--e
Confidence            999999999999999987432222  1111111111 10000  00000000        00 122221 2333322  1


Q ss_pred             ceEEEEEccCCCC--C-C-ccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCC-CCccCCcEEEeCCCCCCC
Q 009027          326 RTTYMFTYIDPQA--G-S-PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQ  400 (546)
Q Consensus       326 ~~~~l~~~~~~~~--~-~-~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~~~~rvlLVGDAA~~v  400 (546)
                      ...+.|. ..+..  . . ...+++.+.|-...|.+... +.......  ...++++...+ .++..+||+|+|||||.+
T Consensus       304 ~~~~~f~-~~p~~~~~~~~~~~e~L~~~f~~w~~~v~el-I~~t~~~~--i~~~~iyd~~p~~~W~~grVvLiGDAAH~~  379 (668)
T PLN02927        304 MQWYAFH-EEPAGGADAPNGMKKRLFEIFDGWCDNVLDL-LHATEEDA--ILRRDIYDRSPGFTWGKGRVTLLGDSIHAM  379 (668)
T ss_pred             EEEEEEE-ECCccccccchhHHHHHHHHhccCCHHHHHH-HHhCcccc--ceeeeEEeccCCCccccCcEEEEcCccCCC
Confidence            1111111 11110  1 1 12233333322222333322 11110000  01223333222 256679999999999999


Q ss_pred             CCCCCCcchhhHhhHHHHHHHHHHHHhCCC---CChhhHHHHhhhh
Q 009027          401 SPVSFGGFGSLTRHLGRLSTGVYEAVRGDF---VDSYSLSLLNPYM  443 (546)
Q Consensus       401 ~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~---l~~~~l~~L~~Ye  443 (546)
                      +|..|+|.++++.|+..|+..|..+++...   ........|+.|+
T Consensus       380 ~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye  425 (668)
T PLN02927        380 QPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYE  425 (668)
T ss_pred             CCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHH
Confidence            999999999999999999999988864310   0111234678999

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.92  E-value=2.3e-24  Score=220.10  Aligned_cols=322  Identities=16%  Similarity=0.156  Sum_probs=211.1

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhC----CCeEEEEcCCCCCC----------CcccccCCHHHHHHHHHcCCCCcccchhh
Q 009027          110 TFDVIVCGG-TLGIFIATALSFK----GLRVAIVERNTLKG----------REQEWNISRKELLELVESGILVEDDIDEA  174 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~----G~rVlLlEr~~~~~----------~~r~~~Is~~~l~~L~~lGl~~~~~ie~~  174 (546)
                      .|||||||| ++|.++|++|...    -+||+|+|-...+.          .+|.-.+|+.++..|+.+|+|+.  +.+.
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~--i~~~  113 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDH--IFHD  113 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHH--hhhh
Confidence            799999996 5699999999843    78999999773321          24556799999999999999964  2222


Q ss_pred             hhhccC---------CCcccccCCccccccccccceeCHHHHHHHHHH--HHHh-cCCEEEeCceEEEEEEe--------
Q 009027          175 TATKFN---------PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKK--RFIS-LGGVIFEGYSVSSICTY--------  234 (546)
Q Consensus       175 i~~~~~---------~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~--~a~~-~G~~v~~~t~v~~i~~~--------  234 (546)
                      ....++         ...+.|..+ ...  ...++.+++..+...|..  ...+ ..+++...+++.++...        
T Consensus       114 R~~~~~~~~v~Ds~s~a~I~~~~d-~~~--~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n  190 (481)
T KOG3855|consen  114 RYQKFSRMLVWDSCSAALILFDHD-NVG--IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN  190 (481)
T ss_pred             ccccccceeeecccchhhhhhccc-ccc--ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence            222221         112233221 111  123678899988888883  3333 35799999999888662        


Q ss_pred             CCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhcCC---CCCCeeeeEE--EEEeeccCCCceeeeeccCCccc--ccCC
Q 009027          235 ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSG---RKPDGVCLVV--GSCARGFKDNSTSDVIYSSSSVK--KVGD  307 (546)
Q Consensus       235 ~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~~~---~~~~~~~~~v--g~~~~~~~~~~~~~i~~~~~~i~--~~~~  307 (546)
                      .....+++.+|..+.+||+|+|||.||++|+..++.   ..++....+.  ..+.+...+....+.|...||+.  |+++
T Consensus       191 ~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d  270 (481)
T KOG3855|consen  191 GMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD  270 (481)
T ss_pred             cceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeeccccc
Confidence            224567788899999999999999999999988775   3454443321  22221122456778888999988  5666


Q ss_pred             CCcceEEEEecCCCCCccceEEEEEccC---------------CCC---CC-----ccHHHHHHHHHHhCccccccc-c-
Q 009027          308 SEVQLFWEAFPAGSGPLDRTTYMFTYID---------------PQA---GS-----PKLEELLERYWDLMPEYQGVT-L-  362 (546)
Q Consensus       308 ~~~~~~W~~fp~~~g~~~~~~~l~~~~~---------------~~~---~~-----~~l~~l~~~~~~~lp~~~~~~-l-  362 (546)
                      +...++|..-|....      .|..+.+               +..   ..     .....+-+..+.......+.. . 
T Consensus       271 ~~s~LvWSts~~~a~------~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp  344 (481)
T KOG3855|consen  271 TLSSLVWSTSPENAS------ILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPP  344 (481)
T ss_pred             ccccceeecCHHHHH------HHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCC
Confidence            778999976543211      1111100               000   00     001000111111110000100 0 


Q ss_pred             CcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhh
Q 009027          363 DNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPY  442 (546)
Q Consensus       363 ~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Y  442 (546)
                      .-+++.......||+.+.++..|+.+|+.|||||||-+||++|||.|++..|+..|.+.+.+|+.+|. +.++...|+.|
T Consensus       345 ~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~-DlgS~~~L~~y  423 (481)
T KOG3855|consen  345 SVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGL-DLGSVEHLEPY  423 (481)
T ss_pred             eEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcc-cccchhhhhHH
Confidence            01122223335789998888899999999999999999999999999999999999999999999986 88888888999


Q ss_pred             h
Q 009027          443 M  443 (546)
Q Consensus       443 e  443 (546)
                      +
T Consensus       424 ~  424 (481)
T KOG3855|consen  424 E  424 (481)
T ss_pred             H
Confidence            8

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.91  E-value=1e-22  Score=218.15  Aligned_cols=314  Identities=16%  Similarity=0.173  Sum_probs=178.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhh---hccCCCccc
Q 009027          112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA---TKFNPNRCG  185 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G-~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~---~~~~~~~v~  185 (546)
                      .|+||||| +|+++|..|+++| ++|+|+||.+..+.. ....++++.++.|+.+|+.+.  ++....   ..+....+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~--~~~~~~~~~~~~~~~~~~   79 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEA--YTQVADSTPAPWQDIWFE   79 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhH--HHHHhcCCCccCcceeEE
Confidence            58999975 5999999999998 699999998765532 334678999999999998643  221110   000000111


Q ss_pred             ccCCc---cccc--ccccc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          186 FEGKG---EIWV--EDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       186 f~~~~---~l~~--~~~l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                      +....   .+..  ....+ ..++|..|.+.|.+.+.  ...++.+++|+++..++++++|.+++|.+++|++||+|||.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~  157 (414)
T TIGR03219        80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGI  157 (414)
T ss_pred             EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCc
Confidence            11110   0000  00111 35789999999988764  35688899999999989999999988889999999999999


Q ss_pred             ChHHHHHhcCC-----CCC--CeeeeEEEEEee-ccCCC-c---eeeeeccCCcccccCCCCcceEEEEecCCCCCccce
Q 009027          260 FSPVVKQIRSG-----RKP--DGVCLVVGSCAR-GFKDN-S---TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT  327 (546)
Q Consensus       260 ~S~vr~ql~~~-----~~~--~~~~~~vg~~~~-~~~~~-~---~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~  327 (546)
                      +|.+|+++...     ..+  .+.+...+.+.. .+... .   ..+-+.. .+.... + ..+.++ .||..++.  ..
T Consensus       158 ~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~-~~p~~~g~--~~  231 (414)
T TIGR03219       158 KSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVD-VPQMYL-G-LDGHIL-TFPVRQGR--LI  231 (414)
T ss_pred             cHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccc-cceEEE-c-CCCeEE-EEECCCCc--EE
Confidence            99999987421     111  111111111110 01000 0   0000000 000001 1 123344 56776552  22


Q ss_pred             EEEEEccCCC-------C-----CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccC-CCCCccCCcEEEeC
Q 009027          328 TYMFTYIDPQ-------A-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFG  394 (546)
Q Consensus       328 ~~l~~~~~~~-------~-----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLVG  394 (546)
                      .++....+..       .     .....+++.+.|....|.++.+ ++...  ..  ..++++.. ...+++.+||+|+|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~~--~~--~~~~~~~~~~~~~w~~grv~LiG  306 (414)
T TIGR03219       232 NVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARAL-LECIP--AP--TLWALHDLAELPGYVHGRVALIG  306 (414)
T ss_pred             EEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHH-HHhCC--CC--CceeeeecccccceeeCcEEEEE
Confidence            2222211110       0     0113445555443333333322 11111  00  01222221 12356779999999


Q ss_pred             CCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          395 DASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       395 DAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ||||.+.|..|||.|+++.|+..|++.|......+. +  --..|+.|+
T Consensus       307 DAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~-~--~~~al~~Ye  352 (414)
T TIGR03219       307 DAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAG-D--LPALLEAYD  352 (414)
T ss_pred             cccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcc-h--HHHHHHHHH
Confidence            999999999999999999999999998876542211 1  123578999

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.90  E-value=5.4e-22  Score=209.99  Aligned_cols=277  Identities=21%  Similarity=0.361  Sum_probs=178.7

Q ss_pred             cEEEEcc-hHHHHHHHHH--HhCCCeEEEEcCCCCC--CCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          112 DVIVCGG-TLGIFIATAL--SFKGLRVAIVERNTLK--GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~L--A~~G~rVlLlEr~~~~--~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      ||||||| ++|+++|..|  ++.|++|+|||+++..  ...+.|..+...+.           .+++++...++...+.+
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~-----------~~~~~v~~~w~~~~v~~   69 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLG-----------PLDSLVSHRWSGWRVYF   69 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccccc-----------chHHHHheecCceEEEe
Confidence            8999995 5799999999  8889999999988765  33345654332211           13455666666556666


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHHHH
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~q  266 (546)
                      .+...... ......|++..|++.|.+++. +++.++.+++|+++..+++++.|.+++|++++|++||||+|..|+..+.
T Consensus        70 ~~~~~~~~-~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~  147 (374)
T PF05834_consen   70 PDGSRILI-DYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARP  147 (374)
T ss_pred             CCCceEEc-ccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccccc
Confidence            54433222 112247999999999999998 6667888999999999999888999899999999999999988773322


Q ss_pred             hcCCCCCCeeeeEEEEEee---c-cCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE--ccCCCC--
Q 009027          267 IRSGRKPDGVCLVVGSCAR---G-FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT--YIDPQA--  338 (546)
Q Consensus       267 l~~~~~~~~~~~~vg~~~~---~-~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~--~~~~~~--  338 (546)
                      .+.     +.  ..|...+   . |+ .... .++++. ..... .+.+++| +.|..++     ..++.  +-...+  
T Consensus       148 ~~~-----Q~--f~G~~v~~~~~~f~-~~~~-~lMD~r-~~~~~-~~~~F~Y-~lP~~~~-----~alvE~T~fs~~~~~  210 (374)
T PF05834_consen  148 LGL-----QH--FYGWEVETDEPVFD-PDTA-TLMDFR-VPQSA-DGPSFLY-VLPFSED-----RALVEETSFSPRPAL  210 (374)
T ss_pred             ccc-----ce--eEEEEEeccCCCCC-CCce-EEEEec-ccCCC-CCceEEE-EEEcCCC-----eEEEEEEEEcCCCCC
Confidence            211     11  1122211   1 11 1111 222221 11100 1356666 7898754     12221  111111  


Q ss_pred             CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHH
Q 009027          339 GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL  418 (546)
Q Consensus       339 ~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~L  418 (546)
                      ....+++.+.+|++.+      +....++.+.+.|.||+......+...++++.+|+||+++||.||++|..+.+.+..+
T Consensus       211 ~~~~~~~~l~~~l~~~------g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~i  284 (374)
T PF05834_consen  211 PEEELKARLRRYLERL------GIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAI  284 (374)
T ss_pred             CHHHHHHHHHHHHHHc------CCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHH
Confidence            1225566666666542      2345566777889999954444556678899999999999999999988888776666


Q ss_pred             HHHHHH
Q 009027          419 STGVYE  424 (546)
Q Consensus       419 ae~I~~  424 (546)
                      ++.+..
T Consensus       285 a~~l~~  290 (374)
T PF05834_consen  285 ADALAK  290 (374)
T ss_pred             HHHHhh
Confidence            655543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.87  E-value=4.4e-21  Score=197.57  Aligned_cols=302  Identities=20%  Similarity=0.177  Sum_probs=160.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      -+||||||| +|+++|+.|+|+|++|+|+|+...+|.. +..++.-+..+.|+.+|+-+.  +.+... . ..+++-.++
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~--i~~~gi-p-~~~~v~~~~   78 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQ--IREQGI-P-LGGRVLIHG   78 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHH--HHHhcC-c-ccceeeeec
Confidence            479999987 4999999999999999999998877754 345666668888988884211  111100 0 011111011


Q ss_pred             --Ccc---ccc--cccccceeCHHHHHHHHHHHHHhcCCEEEeCc------eEEEEEEeCCeEEEEEcCCcEEEcCEEEE
Q 009027          189 --KGE---IWV--EDILNLGVSPAKLIEIVKKRFISLGGVIFEGY------SVSSICTYENAAVLLLAEGKILSSHLIID  255 (546)
Q Consensus       189 --~~~---l~~--~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t------~v~~i~~~~dgv~V~~~~g~~i~ArlVV~  255 (546)
                        +.+   +..  ++..-..+.+..+.+.+...+... .+|+.+.      ....++......+|++.+|.++.+|++||
T Consensus        79 ~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dllig  157 (420)
T KOG2614|consen   79 DSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIG  157 (420)
T ss_pred             CCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCC-CeeecccccccccccceeeecccccceecCCCcEEEeeEEEE
Confidence              111   111  111112244555555555554443 3555553      44444455556678888899999999999


Q ss_pred             ecCCChHHHHHhcCC-CCCCeeeeEEEEEeeccC-CCce-eeeeccCCcc---cccCCCCcceEEEEecCCCCCccceEE
Q 009027          256 AMGNFSPVVKQIRSG-RKPDGVCLVVGSCARGFK-DNST-SDVIYSSSSV---KKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (546)
Q Consensus       256 ADG~~S~vr~ql~~~-~~~~~~~~~vg~~~~~~~-~~~~-~~i~~~~~~i---~~~~~~~~~~~W~~fp~~~g~~~~~~~  329 (546)
                      |||+.|.||+.++.. ..++..|-..|...  ++ .+.. ..++...+.-   .+.+  +-..+|..|-...    .+..
T Consensus       158 CDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~--~~~~~~~~~~vf~~~~~~~~~~~~~--~~~~~~y~~~~k~----~t~t  229 (420)
T KOG2614|consen  158 CDGAYSKVRKWLGFKEPRYDGSQAYRGLGF--IPNGIPFGKKVFAIYGNGLHSWPRP--GFHLIAYWFLDKS----LTST  229 (420)
T ss_pred             cCchHHHHHHHhcccCCcceeEEEEeeeee--ccCCCCcccceecccCCeEEEcccC--CceEEEEEeecCC----cccc
Confidence            999999999999765 33444443222221  11 1111 1111110000   0000  1111221122111    1111


Q ss_pred             EEE-ccCCCCCCccHHHHHHHHHHhCcccccccc-CcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCc
Q 009027          330 MFT-YIDPQAGSPKLEELLERYWDLMPEYQGVTL-DNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG  407 (546)
Q Consensus       330 l~~-~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l-~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G  407 (546)
                      .|. ..++........++.+.+.+.+|+.-.... +.+. .++.. ..|......-+...++|+|+|||||.+-|.-|||
T Consensus       230 ~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~-~t~l~-~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG  307 (420)
T KOG2614|consen  230 DFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIV-RTPLA-DRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQG  307 (420)
T ss_pred             cccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhh-hchhh-hcCCcCeeeeccCCCeEEEecccccccCCccccc
Confidence            110 111100011334555555555554433211 1111 11111 1111111111344569999999999999999999


Q ss_pred             chhhHhhHHHHHHHHHHHHh
Q 009027          408 FGSLTRHLGRLSTGVYEAVR  427 (546)
Q Consensus       408 ~g~~lrd~~~Lae~I~~Al~  427 (546)
                      .+.++.|+..|++.+.+|.+
T Consensus       308 ~n~a~ED~~VLa~~L~~~~~  327 (420)
T KOG2614|consen  308 GNCAFEDCVVLAECLDEAIN  327 (420)
T ss_pred             ccchHHHHHHHHHHHHHhcc
Confidence            99999999999999999987

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.86  E-value=1.4e-19  Score=191.30  Aligned_cols=272  Identities=16%  Similarity=0.207  Sum_probs=157.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ||+||||| +|+++|+.|+++  |++|+|+|+.+..+..+.|..+...+...   +   ...++.++...+....+.+..
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~---~---~~~~~~~v~~~W~~~~v~~~~   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDA---Q---HAWLADLVQTDWPGYEVRFPK   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchh---h---hhhhhhhheEeCCCCEEECcc
Confidence            89999965 699999999987  99999999987655555665433222111   0   001334444555444444432


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhc
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR  268 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~  268 (546)
                      ... ..... -..|++..|.+.|.+++.. +  ++.+++|+++  +++++++  ++|++++|++||+|||.+|+-....+
T Consensus        75 ~~~-~l~~~-Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~~  145 (370)
T TIGR01789        75 YRR-KLKTA-YRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLKGG  145 (370)
T ss_pred             hhh-hcCCC-ceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCccccce
Confidence            211 11111 2578999999999877643 3  7778999887  5666655  68889999999999999985222211


Q ss_pred             CCCCCCeeeeEEEEEee---ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCC----CCc
Q 009027          269 SGRKPDGVCLVVGSCAR---GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA----GSP  341 (546)
Q Consensus       269 ~~~~~~~~~~~vg~~~~---~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~----~~~  341 (546)
                        .   + + ..|...+   .++ .+.. +++++..-+   .++.. |-++-|..++     ..++.+....+    ...
T Consensus       146 --~---Q-~-f~G~~~r~~~p~~-~~~~-~lMD~~~~q---~~g~~-F~Y~lP~~~~-----~~lvE~T~~s~~~~l~~~  207 (370)
T TIGR01789       146 --F---Q-V-FLGREMRLQEPHG-LENP-IIMDATVDQ---LAGYR-FVYVLPLGSH-----DLLIEDTYYADDPLLDRN  207 (370)
T ss_pred             --e---e-E-EEEEEEEEcCCCC-CCcc-EEEeeeccC---CCCce-EEEECcCCCC-----eEEEEEEeccCCCCCCHH
Confidence              1   1 1 1122221   111 1111 122221111   11222 3345677654     12222211111    123


Q ss_pred             cHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccC---CCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHH
Q 009027          342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD---SPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL  418 (546)
Q Consensus       342 ~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~---~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~L  418 (546)
                      .+++.+.+|....    .  ....++.+.+.+.+|+...   .+.....++++++|||||++||.||+||+.+++++..|
T Consensus       208 ~l~~~l~~~~~~~----g--~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~l  281 (370)
T TIGR01789       208 ALSQRIDQYARAN----G--WQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADAL  281 (370)
T ss_pred             HHHHHHHHHHHHh----C--CCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHH
Confidence            5555566666433    1  1223344445578997432   11112356799999999999999999999999998888


Q ss_pred             HHHH
Q 009027          419 STGV  422 (546)
Q Consensus       419 ae~I  422 (546)
                      ++.+
T Consensus       282 a~~~  285 (370)
T TIGR01789       282 AAQP  285 (370)
T ss_pred             Hhcc
Confidence            8665

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.81  E-value=1.1e-19  Score=196.63  Aligned_cols=296  Identities=19%  Similarity=0.205  Sum_probs=155.8

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCC---CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhh-----hcc---
Q 009027          112 DVIVCGG-TLGIFIATALSFKG---LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TKF---  179 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G---~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~-----~~~---  179 (546)
                      ||||||| ++|.++|+.|++.+   ++|+|||+...|+..-+....+.....+..+|+-+.+-+.++..     ..|   
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w   80 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW   80 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence            7999996 57999999999998   99999999988875443355555666778888753311211110     001   


Q ss_pred             C--CC--------------ccccc---------------------------CCc-c----ccccccccceeCHHHHHHHH
Q 009027          180 N--PN--------------RCGFE---------------------------GKG-E----IWVEDILNLGVSPAKLIEIV  211 (546)
Q Consensus       180 ~--~~--------------~v~f~---------------------------~~~-~----l~~~~~l~~~V~~~~L~~~L  211 (546)
                      .  ..              .+.|.                           ++. .    ...+...++.+|+.+|++.|
T Consensus        81 ~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L  160 (454)
T PF04820_consen   81 GERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFL  160 (454)
T ss_dssp             SSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHH
T ss_pred             CCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHH
Confidence            0  00              00000                           000 0    00111234679999999999


Q ss_pred             HHHHHhcCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEcCEEEEecCCChHHHHHh-cCCCC-CCeeeeEEEEEeecc
Q 009027          212 KKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQI-RSGRK-PDGVCLVVGSCARGF  287 (546)
Q Consensus       212 ~~~a~~~G~~v~~~t~v~~i~~~~dgv--~V~~~~g~~i~ArlVV~ADG~~S~vr~ql-~~~~~-~~~~~~~vg~~~~~~  287 (546)
                      +++|.+.|+++++++ |+++..++++.  .|.+++|++++||++|||+|.+|.+.++. +.+.. .....+.-...+...
T Consensus       161 ~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~  239 (454)
T PF04820_consen  161 RRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQV  239 (454)
T ss_dssp             HHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEEE
T ss_pred             HHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEec
Confidence            999999999999885 77888877764  46777899999999999999999988773 22210 111110000111111


Q ss_pred             C--C--CceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCccHHHHHHHHHHhCccccccccC
Q 009027          288 K--D--NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLD  363 (546)
Q Consensus       288 ~--~--~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~  363 (546)
                      +  +  ..+..+.    ..      ..+++| .+|..++   ..+++. +...   ..+-.+.++++.+.++.....  .
T Consensus       240 ~~~~~~~~~T~~~----a~------~~GW~W-~IPL~~~---~~~G~V-~s~~---~~s~~~A~~~l~~~l~~~~~~--~  299 (454)
T PF04820_consen  240 PNEDPPEPYTRST----AF------EAGWIW-YIPLQNR---RGSGYV-YSSD---FISDDEAEAELLAYLGGSPEA--E  299 (454)
T ss_dssp             E-SSCTTSSEEEE----EE------SSEEEE-EEEESSE---EEEEEE-EETT---TSHHHHHHHHHHHHHTCHCTT--S
T ss_pred             CcCCCCCCceeEE----ec------CCceEE-EccCCCc---ceEEEE-eccc---cCCHHHHHHHHHHhcchhhhc--c
Confidence            1  1  0011100    01      358889 6888764   343222 2221   112233333444433322111  1


Q ss_pred             cceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          364 NLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       364 ~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      . ...+...+       ...+...+|+++|||||++++||.++|+.+.+..+    +.|.+++..+..+.   ..++.|+
T Consensus       300 ~-~~i~~~~g-------~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa----~~l~~~l~~~~~~~---~~~~~Yn  364 (454)
T PF04820_consen  300 P-RHIRFRSG-------RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAA----EALAEALPDDDFSP---AALDRYN  364 (454)
T ss_dssp             C-EEEE-S-E-------EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHH----HHHHHTHHCTTCCH---HHHHHHH
T ss_pred             h-hhhccccc-------chhhcccCCEEEEcchhhccCccccccHHHHHHHH----HHHHHhcccCCCCH---HHHHHHH
Confidence            1 11111111       13366789999999999999999999998887744    44555566554342   2446677

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.80  E-value=1.3e-17  Score=169.37  Aligned_cols=294  Identities=19%  Similarity=0.216  Sum_probs=172.4

Q ss_pred             CCCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCcccccCCHHHHHHHHHcCCCCcc-cchhhhhhccCCCc
Q 009027          107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEWNISRKELLELVESGILVED-DIDEATATKFNPNR  183 (546)
Q Consensus       107 ~~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~~~Is~~~l~~L~~lGl~~~~-~ie~~i~~~~~~~~  183 (546)
                      .+.++||||||+| +|+++|++|+|.|.||.||||.- .|.+.-+.-+.++....|.+||+-+.. .|+...+..|    
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy----  117 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGY----  117 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeee----
Confidence            4557999999976 59999999999999999999874 333222234667778889999986531 1222222222    


Q ss_pred             ccccCCcccccc--------ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE--cCCc--EEEc
Q 009027          184 CGFEGKGEIWVE--------DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK--ILSS  250 (546)
Q Consensus       184 v~f~~~~~l~~~--------~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~~g~--~i~A  250 (546)
                      .-|.++.+...|        +.-+..+.+.+|.+.|++++.+..+.-+++.+|.++..+++-++ |+.  +.|+  +..|
T Consensus       118 ~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~A  197 (509)
T KOG1298|consen  118 AIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFA  197 (509)
T ss_pred             EEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEec
Confidence            122222221111        12245678889999999999988775566667888776666222 333  3333  7889


Q ss_pred             CEEEEecCCChHHHHHhcCCCCCCeeeeEEEEEeec--cCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceE
Q 009027          251 HLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT  328 (546)
Q Consensus       251 rlVV~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~--~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~  328 (546)
                      .|.|.|||..|.+||.+....-.+-....||.+..+  .+....++++++. |..         + .++|....   -+.
T Consensus       198 pLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~~-psp---------i-l~Y~ISSt---EvR  263 (509)
T KOG1298|consen  198 PLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILSK-PSP---------I-LVYQISST---EVR  263 (509)
T ss_pred             ceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEecC-CCc---------E-EEEEecch---heE
Confidence            999999999999999986432211001123443332  2233456666652 211         1 14565543   244


Q ss_pred             EEEEccCCCCCCccHHHHHHHHHHh--Ccccccc---c----cCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCC
Q 009027          329 YMFTYIDPQAGSPKLEELLERYWDL--MPEYQGV---T----LDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI  399 (546)
Q Consensus       329 ~l~~~~~~~~~~~~l~~l~~~~~~~--lp~~~~~---~----l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~  399 (546)
                      .++.+....- .......+..|...  -|++...   .    .++-.++     ..|..+..+......+++++|||-.+
T Consensus       264 cl~~v~g~~~-Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~ir-----smpn~~mpa~~~~~~G~illGDAfNM  337 (509)
T KOG1298|consen  264 CLVDVPGQKL-PSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIR-----SMPNSSMPATLNDKKGVILLGDAFNM  337 (509)
T ss_pred             EEEecCcccC-CcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchh-----cCccccCCCCcCCCCceEEEcccccc
Confidence            4554432110 00111111222211  1111100   0    0111111     34555444445667899999999999


Q ss_pred             CCCCCCCcchhhHhhHHHHHHHHHH
Q 009027          400 QSPVSFGGFGSLTRHLGRLSTGVYE  424 (546)
Q Consensus       400 v~Plsg~G~g~~lrd~~~Lae~I~~  424 (546)
                      -||++|+|+-.++-|+..|-..|..
T Consensus       338 RHPltggGMtV~l~Di~lLr~ll~p  362 (509)
T KOG1298|consen  338 RHPLTGGGMTVALSDIVLLRRLLKP  362 (509)
T ss_pred             cCCccCCceEeehhHHHHHHHHhcc
Confidence            9999999999999888877776654

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.78  E-value=1.1e-17  Score=192.00  Aligned_cols=295  Identities=15%  Similarity=0.105  Sum_probs=159.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhh--ccCCCccc
Q 009027          112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATAT--KFNPNRCG  185 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~--~~~~~~v~  185 (546)
                      +|+||||| +|+++|+.|+++  |++|+|+||++..+.. ....++++.++.|..++   +.-.+.+...  .+....+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~---~~~~~~~~~~~~~~~~~~~~   78 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAAD---PVSAAAIGDAFNHWDDIDVH   78 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcC---HHHHHHHHHhcccCCceEEE
Confidence            69999965 688999999998  9999999998865432 23468888887776654   1101111110  11111122


Q ss_pred             ccCCcccccccccc-ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          186 FEGKGEIWVEDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       186 f~~~~~l~~~~~l~-~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                      +.+ ... ...... +.++|..|++.|.+++.+.|++++.+++++++..            ..+++++||+|||.+|.+|
T Consensus        79 ~~g-~~~-~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~vR  144 (765)
T PRK08255         79 FKG-RRI-RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSRIR  144 (765)
T ss_pred             ECC-EEE-EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHHHH
Confidence            221 111 111111 3589999999999999999999999998876531            1257999999999999999


Q ss_pred             HHhcCCCCCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEE-EecCCCCCccceEEEEEccCC-----CC
Q 009027          265 KQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE-AFPAGSGPLDRTTYMFTYIDP-----QA  338 (546)
Q Consensus       265 ~ql~~~~~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~-~fp~~~g~~~~~~~l~~~~~~-----~~  338 (546)
                      +++.....+...........-+.... ...+-+...+.      ..+++|. .||..++   ...+++...+.     ..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~------~~g~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~~  214 (765)
T PRK08255        145 TRYADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEET------EHGWFQAHAYRFDDD---TSTFIVETPEEVWRAAGL  214 (765)
T ss_pred             HHHHhhcCCceecCCCceEEecCCCc-ccceeEEEEec------CCceEEEEEeeeCCC---CcEEEEEcCHHHHHhcCC
Confidence            98743211110000000001011100 00000000000      1233332 3565543   23333333210     00


Q ss_pred             C---Cc-cHHHHHHHHHHhCccccccccCcceE-eeeeeeeeccccCCCCCccCCc----EEEeCCCCCCCCCCCCCcch
Q 009027          339 G---SP-KLEELLERYWDLMPEYQGVTLDNLEI-QRVIYGIFPTYRDSPLPAAFNR----ILQFGDASGIQSPVSFGGFG  409 (546)
Q Consensus       339 ~---~~-~l~~l~~~~~~~lp~~~~~~l~~~~~-~~~~~g~~P~~~~~~~~~~~~r----vlLVGDAA~~v~Plsg~G~g  409 (546)
                      .   .. ..+.+.+.|-...+....+  ..... ....+..++.  ....+++.+|    ++|+|||||.++|..|+|.|
T Consensus       215 ~~~~~~~~~~~l~~~f~~~~~~~~li--~~~~~~~~~~w~~~~~--~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~  290 (765)
T PRK08255        215 DEMSQEESIAFCEKLFADYLDGHPLM--SNASHLRGSAWINFPR--VVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTK  290 (765)
T ss_pred             ccCCHHHHHHHHHHHhHHhcCCCccc--ccccccccceeeecce--eccCCCccCCCcccEEEEEcCcccCCCCcchhHH
Confidence            0   11 2222222232333322111  11110 0001112221  1223566778    99999999999999999999


Q ss_pred             hhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       410 ~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +++.|+..|++.|.....      ..-..|+.|+
T Consensus       291 ~aieDa~~La~~L~~~~~------~~~~al~~ye  318 (765)
T PRK08255        291 LALEDAIELARCLHEHPG------DLPAALAAYE  318 (765)
T ss_pred             HHHHHHHHHHHHHHHccc------cHHHHHHHHH
Confidence            999999999999865311      1234567888

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.42  E-value=4.3e-12  Score=127.62  Aligned_cols=134  Identities=23%  Similarity=0.279  Sum_probs=94.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc---cc-----ccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE---QE-----WNISRKELLELVESGILVEDDIDEATATKFN  180 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~---r~-----~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~  180 (546)
                      +|||+|||| ++|+++|+.|+++|++|+|+||+..++..   ..     ..+.......|.++|+.              
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~--------------   90 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIR--------------   90 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCC--------------
Confidence            699999995 57999999999999999999998766421   00     11222223344444431              


Q ss_pred             CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eE---EEEEc---------CCcE
Q 009027          181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLLA---------EGKI  247 (546)
Q Consensus       181 ~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv---~V~~~---------~g~~  247 (546)
                           |...    .+.  .+.+++..+...|.+++.+.|++++.+++|+++..+++ .+   ++...         +..+
T Consensus        91 -----~~~~----~~g--~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~  159 (257)
T PRK04176         91 -----YKEV----EDG--LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT  159 (257)
T ss_pred             -----ceee----cCc--ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE
Confidence                 1000    000  13468889999999999999999999999999987666 22   22210         1247


Q ss_pred             EEcCEEEEecCCChHHHHHhc
Q 009027          248 LSSHLIIDAMGNFSPVVKQIR  268 (546)
Q Consensus       248 i~ArlVV~ADG~~S~vr~ql~  268 (546)
                      ++|++||+|+|++|.+.+.+.
T Consensus       160 i~Ak~VI~ATG~~a~v~~~l~  180 (257)
T PRK04176        160 IEAKAVVDATGHDAEVVSVLA  180 (257)
T ss_pred             EEcCEEEEEeCCCcHHHHHHH
Confidence            999999999999999998773

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.40  E-value=7.1e-12  Score=125.77  Aligned_cols=132  Identities=27%  Similarity=0.430  Sum_probs=92.2

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCCcccchhhhhhcc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF  179 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~---------Is~~~l~~L~~lGl~~~~~ie~~i~~~~  179 (546)
                      +|||+|||| ++|+++|+.|+++|++|+||||+..++.. .|.         +.....+.|+++|+.             
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg-~~~gg~~~~~~~~~~~~~~~l~~~gi~-------------   86 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG-SWGGGMLFSKIVVEKPAHEILDEFGIR-------------   86 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc-ccCCCcceecccccchHHHHHHHCCCC-------------
Confidence            699999995 57999999999999999999999876532 121         111112223222221             


Q ss_pred             CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EE-EEEc-----------CC
Q 009027          180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AV-LLLA-----------EG  245 (546)
Q Consensus       180 ~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~-V~~~-----------~g  245 (546)
                            |....     + ..+..++..+.+.|.+++.++|++++.++++.++..++++  +. |.+.           +.
T Consensus        87 ------~~~~~-----~-g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~  154 (254)
T TIGR00292        87 ------YEDEG-----D-GYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDP  154 (254)
T ss_pred             ------eeecc-----C-ceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCC
Confidence                  10000     0 0123577889999999999999999999999999887762  21 2221           12


Q ss_pred             cEEEcCEEEEecCCChHHHHHh
Q 009027          246 KILSSHLIIDAMGNFSPVVKQI  267 (546)
Q Consensus       246 ~~i~ArlVV~ADG~~S~vr~ql  267 (546)
                      .+++|++||+|+|+.|.+.+.+
T Consensus       155 ~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       155 LTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             EEEEcCEEEEeecCCchHHHHH
Confidence            4799999999999999999876

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.31  E-value=7.6e-12  Score=120.10  Aligned_cols=131  Identities=27%  Similarity=0.383  Sum_probs=86.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccc---------cCCHHHHHHHHHcCCCCcccchhhhhhcc
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---------NISRKELLELVESGILVEDDIDEATATKF  179 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~---------~Is~~~l~~L~~lGl~~~~~ie~~i~~~~  179 (546)
                      +|||+||| ||+|+++|..||++|+||+++||+..++.. .|         -+.......|+++|+-             
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg-~~~Gg~lf~~iVVq~~a~~iL~elgi~-------------   82 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG-MWGGGMLFNKIVVQEEADEILDELGIP-------------   82 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT-TTS-CTT---EEEETTTHHHHHHHT---------------
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc-ccccccccchhhhhhhHHHHHHhCCce-------------
Confidence            69999999 567999999999999999999998876521 12         1111223344444431             


Q ss_pred             CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC-CeE---EEEEc---------CCc
Q 009027          180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAA---VLLLA---------EGK  246 (546)
Q Consensus       180 ~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv---~V~~~---------~g~  246 (546)
                            +...     .+ .-+.+|...+-..|..++.++|++++..+.|+++...+ +.+   ++..+         |.-
T Consensus        83 ------y~~~-----~~-g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl  150 (230)
T PF01946_consen   83 ------YEEY-----GD-GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL  150 (230)
T ss_dssp             -------EE------SS-EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred             ------eEEe-----CC-eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence                  1000     01 12457888999999999999999999999999998887 433   33332         234


Q ss_pred             EEEcCEEEEecCCChHHHHH
Q 009027          247 ILSSHLIIDAMGNFSPVVKQ  266 (546)
Q Consensus       247 ~i~ArlVV~ADG~~S~vr~q  266 (546)
                      +++|++||||+|+.+++.+.
T Consensus       151 ~i~ak~ViDaTGHda~v~~~  170 (230)
T PF01946_consen  151 TIRAKVVIDATGHDAEVVRV  170 (230)
T ss_dssp             EEEESEEEE---SSSSSTSH
T ss_pred             eEEEeEEEeCCCCchHHHHH
Confidence            89999999999999876653

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.30  E-value=4.8e-11  Score=114.02  Aligned_cols=132  Identities=28%  Similarity=0.379  Sum_probs=95.1

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCCcccchhhhhhcc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF  179 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~---------Is~~~l~~L~~lGl~~~~~ie~~i~~~~  179 (546)
                      +-||+|||| |+|+++|+.||++|+||+++||+-.++. .-|.         +-...-++|+++|+-            |
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG-G~w~GGmlf~~iVv~~~a~~iL~e~gI~------------y   96 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG-GIWGGGMLFNKIVVREEADEILDEFGIR------------Y   96 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC-cccccccccceeeecchHHHHHHHhCCc------------c
Confidence            469999995 6799999999999999999999876552 1121         112233445544431            1


Q ss_pred             CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-e---EEEEEc---------CCc
Q 009027          180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-A---AVLLLA---------EGK  246 (546)
Q Consensus       180 ~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-g---v~V~~~---------~g~  246 (546)
                             ...     ++. -+..|+..+-..|..++.++|++|+..+.|+++...++ +   +++..+         |.-
T Consensus        97 -------e~~-----e~g-~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl  163 (262)
T COG1635          97 -------EEE-----EDG-YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPL  163 (262)
T ss_pred             -------eec-----CCc-eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcc
Confidence                   000     011 14567888999999999999999999999999988777 3   333321         344


Q ss_pred             EEEcCEEEEecCCChHHHHHh
Q 009027          247 ILSSHLIIDAMGNFSPVVKQI  267 (546)
Q Consensus       247 ~i~ArlVV~ADG~~S~vr~ql  267 (546)
                      +++|++||||+|+.-++.+-+
T Consensus       164 ~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         164 TIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             eeeEEEEEeCCCCchHHHHHH
Confidence            899999999999999988765

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.29  E-value=1.8e-10  Score=115.15  Aligned_cols=173  Identities=21%  Similarity=0.249  Sum_probs=105.8

Q ss_pred             EcCEEEEecCCChHHHHHhcCCCCCCeeeeEEEEEeec--cCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027          249 SSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (546)
Q Consensus       249 ~ArlVV~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~--~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~  326 (546)
                      .|+++|.|||..|.+|+++. ..++.-....+|...+.  .+....++++...          .+.++ +++.+..   .
T Consensus         1 ~A~LtivaDG~~S~fRk~l~-~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~----------~~pil-~YqI~~~---e   65 (276)
T PF08491_consen    1 FAPLTIVADGCFSKFRKELS-DNKPQVRSYFVGLILKDAPLPKPNHGHVILGK----------PGPIL-LYQISSN---E   65 (276)
T ss_pred             CCCEEEEecCCchHHHHhhc-CCCCceeeeEEEEEEcCCCCCCCCceEEEEcC----------CCcEE-EEEcCCC---c
Confidence            37899999999999999997 33333333345555442  3345567776652          12334 5776654   3


Q ss_pred             eEEEEEccCC-CCC--CccHHHHHHHHH-HhCccccccc----cCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCC
Q 009027          327 TTYMFTYIDP-QAG--SPKLEELLERYW-DLMPEYQGVT----LDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG  398 (546)
Q Consensus       327 ~~~l~~~~~~-~~~--~~~l~~l~~~~~-~~lp~~~~~~----l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~  398 (546)
                      +..++.+... -+.  +.++++.+.+.. -.+|+--+..    +++-.+     -..|..+..+.+...++++++|||++
T Consensus        66 tR~Lvdvp~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~ri-----rsMPn~~lp~~~~~~~G~vllGDA~n  140 (276)
T PF08491_consen   66 TRVLVDVPGPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRI-----RSMPNSFLPASPNWKPGVVLLGDAAN  140 (276)
T ss_pred             eEEEEEeCCCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCc-----ceecccccCCCCCCCCCEEEEehhhc
Confidence            5666665432 111  224555444322 2344321111    112121     24566655555667799999999999


Q ss_pred             CCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChh-hHHHHhhhh
Q 009027          399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSY-SLSLLNPYM  443 (546)
Q Consensus       399 ~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~-~l~~L~~Ye  443 (546)
                      +.||+||||+..++.|+..|.+.|...  .+.-+.+ -.+.++.|.
T Consensus       141 mrHPLTGgGMTVAl~Dv~lL~~lL~~~--~dl~d~~~v~~~l~~f~  184 (276)
T PF08491_consen  141 MRHPLTGGGMTVALNDVVLLRDLLSPI--PDLSDTKAVLEALKKFH  184 (276)
T ss_pred             CcCCccccchhhHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHH
Confidence            999999999999999999999998876  1111222 245567776

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.24  E-value=9e-10  Score=114.12  Aligned_cols=68  Identities=21%  Similarity=0.280  Sum_probs=57.9

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChHH-HHHhc
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV-VKQIR  268 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~v-r~ql~  268 (546)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++.++ |.+++|+ ++|+.||.|.|.+|+- .+.++
T Consensus       142 g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~  211 (358)
T PF01266_consen  142 GVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLG  211 (358)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTT
T ss_pred             ccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeeccc
Confidence            4589999999999999999999999999999999999998 9998887 9999999999999875 44443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.22  E-value=1.9e-10  Score=119.27  Aligned_cols=159  Identities=22%  Similarity=0.275  Sum_probs=103.7

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc------ccccCCHHH--HHHHHHcCCCCcccchhhhhhccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRKE--LLELVESGILVEDDIDEATATKFN  180 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~------r~~~Is~~~--l~~L~~lGl~~~~~ie~~i~~~~~  180 (546)
                      .+||||||| ++|+++|..++++|.+|+|||+.+-++.+      ..-|++..+  -+.|.+.+=-. .-+.+.+ .+|.
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~-~fl~sal-~~ft   80 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNG-HFLKSAL-ARFT   80 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcc-hHHHHHH-HhCC
Confidence            689999996 57999999999999999999999877643      112444322  11222221000 0011111 1121


Q ss_pred             CCc-ccccC--Ccccccc---ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 009027          181 PNR-CGFEG--KGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (546)
Q Consensus       181 ~~~-v~f~~--~~~l~~~---~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV  254 (546)
                      +.. +.|..  +..++.+   ..+...-....+.++|..++++.|++++.+++|.++..++++..|.+.+|.+|+|+-+|
T Consensus        81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~li  160 (408)
T COG2081          81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLI  160 (408)
T ss_pred             HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEE
Confidence            110 11110  0111111   11112235677899999999999999999999999999988999999889899999999


Q ss_pred             EecCCCh-----------HHHHHhcCC
Q 009027          255 DAMGNFS-----------PVVKQIRSG  270 (546)
Q Consensus       255 ~ADG~~S-----------~vr~ql~~~  270 (546)
                      -|.|..|           ++++|+|..
T Consensus       161 lAtGG~S~P~lGstg~gy~iA~~~G~~  187 (408)
T COG2081         161 LATGGKSWPKLGSTGFGYPIARQFGHT  187 (408)
T ss_pred             EecCCcCCCCCCCCchhhHHHHHcCCc
Confidence            9999776           567777654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.20  E-value=1e-08  Score=113.04  Aligned_cols=67  Identities=13%  Similarity=0.174  Sum_probs=56.5

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC----cEEEcCEEEEecCCChH-HHHHh
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLIIDAMGNFSP-VVKQI  267 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g----~~i~ArlVV~ADG~~S~-vr~ql  267 (546)
                      .+++.++...+...+.+.|++++..++|+++..+++.+.|.+.++    .+++|+.||.|+|.+|. +++++
T Consensus       151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~  222 (502)
T PRK13369        151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV  222 (502)
T ss_pred             eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence            478899999999999999999999999999988877777776553    36999999999999986 54433

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.16  E-value=1.3e-08  Score=112.29  Aligned_cols=66  Identities=18%  Similarity=0.242  Sum_probs=54.9

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---Cc--EEEcCEEEEecCCChH-HHHH
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSP-VVKQ  266 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g~--~i~ArlVV~ADG~~S~-vr~q  266 (546)
                      .||+.+|...+.+.+.+.|++++.+++|+++..+++.+.|++.+   |+  +++|+.||.|+|.+|. +.++
T Consensus       151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~  222 (508)
T PRK12266        151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDD  222 (508)
T ss_pred             ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhh
Confidence            47888888888888999999999999999998877777777653   43  7999999999999986 4443

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.11  E-value=5.5e-10  Score=119.35  Aligned_cols=157  Identities=24%  Similarity=0.306  Sum_probs=79.6

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-------ccccCCHHHH---HHHHHcCCCCcccchhhhhhcc
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-------QEWNISRKEL---LELVESGILVEDDIDEATATKF  179 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-------r~~~Is~~~l---~~L~~lGl~~~~~ie~~i~~~~  179 (546)
                      |||+|||| ++|+++|+.+|+.|.+|+|+||++.++.+       |+ |++....   +.+...+- ...-+...+ ..|
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrC-N~tn~~~~~~~~~~~~~~-~~~f~~~~l-~~f   77 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRC-NLTNLNIDPSEFLSGYGR-NPKFLKSAL-KRF   77 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT--EEEETTSSGGGEECS-TB-TTTCTHHHH-HHS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCc-cccccccchhhHhhhccc-chHHHHHHH-hcC
Confidence            89999996 56999999999999999999999876532       11 2211000   00000000 000000000 011


Q ss_pred             CCC-cccccC--Cccccc-cc--cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCE
Q 009027          180 NPN-RCGFEG--KGEIWV-ED--ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHL  252 (546)
Q Consensus       180 ~~~-~v~f~~--~~~l~~-~~--~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~Arl  252 (546)
                      ++. .+.|..  +-.... ++  ++...-....+.++|.+++.+.|++++.+++|.++...+++ +.|.++++.++.|+-
T Consensus        78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~  157 (409)
T PF03486_consen   78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA  157 (409)
T ss_dssp             -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred             CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence            000 001100  000000 00  11112245678899999999999999999999999998888 788886777999999


Q ss_pred             EEEecCCCh-----------HHHHHhcCC
Q 009027          253 IIDAMGNFS-----------PVVKQIRSG  270 (546)
Q Consensus       253 VV~ADG~~S-----------~vr~ql~~~  270 (546)
                      ||-|.|..|           .+++++|..
T Consensus       158 vILAtGG~S~p~~GS~G~gy~~a~~lGh~  186 (409)
T PF03486_consen  158 VILATGGKSYPKTGSDGSGYRIAKKLGHT  186 (409)
T ss_dssp             EEE----SSSGGGT-SSHHHHHHHHTT--
T ss_pred             EEEecCCCCccccCCCcHHHHHHHHCCCc
Confidence            999999876           456676644

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.09  E-value=3.4e-09  Score=111.97  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=59.0

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC-hHHHHHhcCCC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF-SPVVKQIRSGR  271 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~-S~vr~ql~~~~  271 (546)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++.+.|.++++ +++|+.||.|.|.. |.+++.++...
T Consensus       140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~  211 (380)
T TIGR01377       140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEI  211 (380)
T ss_pred             cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCC
Confidence            4589999999999999999999999999999988888888887655 79999888888865 66887776543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.06  E-value=2.1e-08  Score=103.73  Aligned_cols=303  Identities=21%  Similarity=0.237  Sum_probs=158.8

Q ss_pred             CCcccEEEEcc-hHHHHHHHHHH------hCCCeEEEEcCCCCCCCccc-c-cCCHHHHHHHHHcCCCCc--ccchhhhh
Q 009027          108 VGTFDVIVCGG-TLGIFIATALS------FKGLRVAIVERNTLKGREQE-W-NISRKELLELVESGILVE--DDIDEATA  176 (546)
Q Consensus       108 ~~~yDVIIVGG-g~G~~~Aa~LA------~~G~rVlLlEr~~~~~~~r~-~-~Is~~~l~~L~~lGl~~~--~~ie~~i~  176 (546)
                      .+.+||+|||| |+|+++|+.|.      .+-+||+|+||+..++.+-- . -|-+.++..|.  -=|.+  .++.....
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~--P~wke~~apl~t~vT  151 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELL--PDWKEDGAPLNTPVT  151 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhC--cchhhcCCccccccc
Confidence            34799999995 67999999763      34789999999988764310 0 12233332221  00110  01111111


Q ss_pred             hccCCCccccc-CCccccc------cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEE--EcC---
Q 009027          177 TKFNPNRCGFE-GKGEIWV------EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL--LAE---  244 (546)
Q Consensus       177 ~~~~~~~v~f~-~~~~l~~------~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~--~~~---  244 (546)
                          ...+.|- ++..+..      .+.-|+.|.-..+.++|.++|.+.|++|+.+..+.++..++|+.+..  +.|   
T Consensus       152 ----~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI  227 (621)
T KOG2415|consen  152 ----SDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGI  227 (621)
T ss_pred             ----ccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccc
Confidence                1111111 1111111      22336888889999999999999999999999999998888865432  322   


Q ss_pred             ------------CcEEEcCEEEEecCCChHHHHHhcCCC------CCCeeeeEEEEEeeccC--CCceeeeeccCC-ccc
Q 009027          245 ------------GKILSSHLIIDAMGNFSPVVKQIRSGR------KPDGVCLVVGSCARGFK--DNSTSDVIYSSS-SVK  303 (546)
Q Consensus       245 ------------g~~i~ArlVV~ADG~~S~vr~ql~~~~------~~~~~~~~vg~~~~~~~--~~~~~~i~~~~~-~i~  303 (546)
                                  |-++.|+..|-|.|.+-.+.+|+-...      .+....+-+.-+.+ ++  ++.-+++.-..+ |+.
T Consensus       228 ~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWe-i~~~~~~pG~v~HT~GwPl~  306 (621)
T KOG2415|consen  228 SKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWE-IDPENHNPGEVAHTLGWPLD  306 (621)
T ss_pred             cCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEe-cChhhcCCcceeeeccCccc
Confidence                        337999999999999988888763221      11111111111111 11  122222211111 121


Q ss_pred             ccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCc--cHHHHHHHHHHhCccccccccCcceEeeeeeeeecc---c
Q 009027          304 KVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP--KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPT---Y  378 (546)
Q Consensus       304 ~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~--~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~---~  378 (546)
                      +  +.-.+-|.+.|  .+.  -.+.++..-.+  -.+|  +.-+.|.++ +..|.++.+ ++.-+  +..++.-.+   .
T Consensus       307 ~--~tYGGsFlYh~--~d~--~VavGlVVgLd--Y~NP~lsP~~EFQk~-K~hP~i~~v-leGgk--~i~YgARaLNEGG  374 (621)
T KOG2415|consen  307 N--DTYGGSFLYHF--NDP--LVAVGLVVGLD--YKNPYLSPYKEFQKM-KHHPSISKV-LEGGK--RIAYGARALNEGG  374 (621)
T ss_pred             C--CccCceeEEEc--CCC--eEEEEEEEEec--CCCCCCCHHHHHHHh-hcCcchhhh-hcCcc--eeeehhhhhccCC
Confidence            1  00111222222  222  12222222111  1123  333333332 356777765 33322  111221111   1


Q ss_pred             cCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCC
Q 009027          379 RDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD  429 (546)
Q Consensus       379 ~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g  429 (546)
                      +++-.+...++=+|||=+|++++=--=-|-..+|.+.-..||.|-+|++..
T Consensus       375 fQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~  425 (621)
T KOG2415|consen  375 FQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGL  425 (621)
T ss_pred             cccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcC
Confidence            222235677888999999999865444666666666666678888888654

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.05  E-value=4.8e-09  Score=111.88  Aligned_cols=70  Identities=20%  Similarity=0.182  Sum_probs=60.4

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH-HHHHhcCC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG  270 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~~~  270 (546)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|.+.++ +++|+.||.|+|.+|+ +++.++..
T Consensus       144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence            4578999999999999999999999999999988888888887666 7999999999999995 66666643

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.04  E-value=8.1e-09  Score=108.94  Aligned_cols=61  Identities=13%  Similarity=0.158  Sum_probs=54.3

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      .+++.++...+.+.+.+.|++++.+++|+++..+++++.|.+++| +++|+.||.|+|..|.
T Consensus       145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence            478889999898889889999999999999998888888887666 7999999999999865

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.00  E-value=1.1e-08  Score=108.90  Aligned_cols=159  Identities=21%  Similarity=0.242  Sum_probs=103.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcc----------cccCCHH-------------HHHHHHHc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQ----------EWNISRK-------------ELLELVES  163 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G--~rVlLlEr~~~~~~~r----------~~~Is~~-------------~l~~L~~l  163 (546)
                      +|||+||||| +|+++|..|++.+  ++|+||||...++...          ..+-+++             ..+.-+++
T Consensus         3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~   82 (429)
T COG0579           3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL   82 (429)
T ss_pred             ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence            7999999987 5999999999998  9999999998765210          1111111             12223333


Q ss_pred             CC-----------CCcccchhhhhhcc-----CCCc-ccccCC------cc---------ccccccccceeCHHHHHHHH
Q 009027          164 GI-----------LVEDDIDEATATKF-----NPNR-CGFEGK------GE---------IWVEDILNLGVSPAKLIEIV  211 (546)
Q Consensus       164 Gl-----------~~~~~ie~~i~~~~-----~~~~-v~f~~~------~~---------l~~~~~l~~~V~~~~L~~~L  211 (546)
                      ++           +++++++.+ ...|     ++.. +.+.+.      ++         ++.+  -+..|+...+-..|
T Consensus        83 ~~~f~~~g~l~vA~~e~e~~~L-~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p--~~giV~~~~~t~~l  159 (429)
T COG0579          83 GIPFINCGKLSVATGEEEVERL-EKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVP--SGGIVDPGELTRAL  159 (429)
T ss_pred             CCcccccCeEEEEEChHHHHHH-HHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcC--CCceEcHHHHHHHH
Confidence            31           111121111 0011     1111 111110      11         1111  13458999999999


Q ss_pred             HHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcE-EEcCEEEEecCCChH-HHHHhcCCC
Q 009027          212 KKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSP-VVKQIRSGR  271 (546)
Q Consensus       212 ~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~-i~ArlVV~ADG~~S~-vr~ql~~~~  271 (546)
                      .+.+.++|+++..+++|+++...+|+ ..+.+.+|++ ++||+||.|-|..|- +++..+...
T Consensus       160 ~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~  222 (429)
T COG0579         160 AEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE  222 (429)
T ss_pred             HHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence            99999999999999999999999994 5666777765 999999999998875 777776654

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.99  E-value=6.4e-09  Score=115.11  Aligned_cols=145  Identities=17%  Similarity=0.179  Sum_probs=88.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCccc----ccCCHH-HHHHHHHcCCCCcccchhhhhhccCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQE----WNISRK-ELLELVESGILVEDDIDEATATKFNPN  182 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~----~~Is~~-~l~~L~~lGl~~~~~ie~~i~~~~~~~  182 (546)
                      +||||||||| +|+.+|+.+|+.|.+|+|||++. .++...+    ..+... -++.+..+|-.-...++.... .+.  
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~gi-q~r--   80 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGI-QFR--   80 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccC-cee--
Confidence            6999999965 69999999999999999999874 2221111    012121 133344444210000011000 010  


Q ss_pred             cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCC
Q 009027          183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       183 ~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      ......+...+.+   ...+|+..+...+.+.+.+. |++++ .+.|+++..+++.+. |.+.+|..+.|+.||+|+|.+
T Consensus        81 ~ln~skGpAV~s~---RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192         81 MLNTSKGPAVRAL---RAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             ecccCCCCceeCc---HHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence            0000001112221   13589999999999998876 56775 567888877777664 777788899999999999976


Q ss_pred             h
Q 009027          261 S  261 (546)
Q Consensus       261 S  261 (546)
                      +
T Consensus       157 L  157 (618)
T PRK05192        157 L  157 (618)
T ss_pred             h
Confidence            5

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.96  E-value=1.9e-08  Score=110.44  Aligned_cols=71  Identities=13%  Similarity=0.123  Sum_probs=55.5

Q ss_pred             ceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCe-EEEEEc---CCc--EEEcCEEEEecCCC-hHHHHHhcCC
Q 009027          200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA-AVLLLA---EGK--ILSSHLIIDAMGNF-SPVVKQIRSG  270 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dg-v~V~~~---~g~--~i~ArlVV~ADG~~-S~vr~ql~~~  270 (546)
                      ..||+..+.+.|.+.+++.| ++++++++|+++..++++ +.|.+.   +|+  +++|+.||.|.|.+ +.+++.++..
T Consensus       178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~  256 (494)
T PRK05257        178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP  256 (494)
T ss_pred             eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence            46899999999999999887 699999999999886665 666643   353  69999887666655 4588777765

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.96  E-value=3.1e-08  Score=108.52  Aligned_cols=71  Identities=14%  Similarity=0.196  Sum_probs=56.2

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEc---CC--cEEEcCEEEEecCCCh-HHHHHhcCC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLA---EG--KILSSHLIIDAMGNFS-PVVKQIRSG  270 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~---~g--~~i~ArlVV~ADG~~S-~vr~ql~~~  270 (546)
                      ..||+..+.+.|.+.+.+.|++++++++|+++..+++ ++.|.+.   ++  .+++|+.||-|.|.+| .+++.+|..
T Consensus       173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~  250 (483)
T TIGR01320       173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP  250 (483)
T ss_pred             EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence            3589999999999999999999999999999987654 5666542   23  2699999977766655 588888765

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.92  E-value=2.5e-08  Score=106.81  Aligned_cols=68  Identities=19%  Similarity=0.093  Sum_probs=56.1

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC-----cEEEcCEEEEecCCChH-HHHHhc
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIIDAMGNFSP-VVKQIR  268 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-----~~i~ArlVV~ADG~~S~-vr~ql~  268 (546)
                      .++..++...|.+.+.+.|++++++++|+++..+++.+++.+.++     .+++|+.||.|.|.+|. +.+.++
T Consensus       193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~  266 (410)
T PRK12409        193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG  266 (410)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence            367888889999999999999999999999988888877765432     37999999999999985 555554

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.92  E-value=1.8e-08  Score=107.79  Aligned_cols=69  Identities=10%  Similarity=0.001  Sum_probs=53.0

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeE-EEEEcCCcEEEcC-EEEEecCCChHHHHHhcCC
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAEGKILSSH-LIIDAMGNFSPVVKQIRSG  270 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv-~V~~~~g~~i~Ar-lVV~ADG~~S~vr~ql~~~  270 (546)
                      .+++..+...|.+.+.+.|++++++++|+++... ++.+ .|.+++| +++|+ +||+|+|..|.+++.++..
T Consensus       179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~  250 (407)
T TIGR01373       179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR  250 (407)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC
Confidence            4678888888999999999999999999999754 3443 4666566 68887 5677777777788776654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.92  E-value=1.4e-08  Score=115.64  Aligned_cols=61  Identities=20%  Similarity=0.143  Sum_probs=55.5

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      .|++..+.+.|.+.+.+ |++++.+++|+++...+++++|.++++..++|+.||.|+|..|.
T Consensus       404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence            47899999999999988 99999999999999888889888877777899999999999985

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.88  E-value=9.9e-09  Score=98.63  Aligned_cols=134  Identities=17%  Similarity=0.222  Sum_probs=77.7

Q ss_pred             EEEcc-hHHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC---cccccC
Q 009027          114 IVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN---RCGFEG  188 (546)
Q Consensus       114 IIVGG-g~G~~~Aa~LA~~G~r-VlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~---~v~f~~  188 (546)
                      +|||| ++|+++|+.|.++|++ |+||||+..++..  |.-.+      ....+.+.....    ..+...   .+.+..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~--w~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~~~   68 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGV--WRRYY------SYTRLHSPSFFS----SDFGLPDFESFSFDD   68 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTH--HHCH-------TTTT-BSSSCCT----GGSS--CCCHSCHHH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCe--eEEeC------CCCccccCcccc----ccccCCccccccccc
Confidence            68885 6799999999999999 9999999766532  32100      001111100000    000000   000000


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      .....   ..........+.+.|.+.+.+.+.+++.+++|+++..+++++.|+++++++++|+.||.|.|..|.
T Consensus        69 ~~~~~---~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   69 SPEWR---WPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             HHHHH---HSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred             CCCCC---CCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence            00000   011125567788899888888898999999999999999999999988888999999999997653

...

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.87  E-value=9e-10  Score=118.91  Aligned_cols=148  Identities=20%  Similarity=0.281  Sum_probs=30.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccc--c--cCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQE--W--NISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~--~--~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      |||||||| +|+++|+.+|+.|.||+||||...++....  .  .+..........-|++     +++...-........
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~-----~e~~~~~~~~~~~~~   75 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIF-----REFLNRLRARGGYPQ   75 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHH-----HHHHHST--------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHH-----HHHHHHHhhhccccc
Confidence            89999965 688899999999999999999998763211  0  0000000000000110     001100000000000


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc--CC-cEEEcCEEEEecCCChH
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EG-KILSSHLIIDAMGNFSP  262 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~--~g-~~i~ArlVV~ADG~~S~  262 (546)
                      . ...-+.   -.+.+++..+...|.+.+.++|++|+.++.++++..+++.++ |.+.  +| .+|+|+++|||+|. .-
T Consensus        76 ~-~~~~~~---~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g~  150 (428)
T PF12831_consen   76 E-DRYGWV---SNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD-GD  150 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-cccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            0 000000   013577788888888888889999999999999998775432 3333  23 48999999999995 45


Q ss_pred             HHHHhcC
Q 009027          263 VVKQIRS  269 (546)
Q Consensus       263 vr~ql~~  269 (546)
                      ++..+|.
T Consensus       151 l~~~aG~  157 (428)
T PF12831_consen  151 LAALAGA  157 (428)
T ss_dssp             -------
T ss_pred             ccccccc
Confidence            6655554

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.86  E-value=1e-07  Score=104.43  Aligned_cols=70  Identities=17%  Similarity=0.114  Sum_probs=58.9

Q ss_pred             eeCHHHHHHHHHHHHHh----cC--CEEEeCceEEEEEEe-CCeEEEEEcCCcEEEcCEEEEecCCChH-HHHHhcCCC
Q 009027          201 GVSPAKLIEIVKKRFIS----LG--GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSGR  271 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~----~G--~~v~~~t~v~~i~~~-~dgv~V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~~~~  271 (546)
                      .||+..+.+.|.+.+.+    .|  ++++++++|+++..+ ++.+.|++.+| +++|+.||-|.|.+|. +++.++.+.
T Consensus       207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~  284 (497)
T PTZ00383        207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGL  284 (497)
T ss_pred             EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCC
Confidence            58999999999999988    77  689999999999887 44677887666 6999999999999885 788787653

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.84  E-value=6.6e-08  Score=107.62  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=55.6

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEcCEEEEecCCChH-HHHHhc
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIR  268 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---~g--~~i~ArlVV~ADG~~S~-vr~ql~  268 (546)
                      ..||+.+|...+...|.++|++++.+++|+++..+++.+. |.+.   ++  .+|+|+.||-|.|.+|. +.+.++
T Consensus       144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g  219 (546)
T PRK11101        144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD  219 (546)
T ss_pred             cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC
Confidence            3589999999999999999999999999999988776543 4432   23  37999999999999986 555554

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.81  E-value=5e-08  Score=106.32  Aligned_cols=61  Identities=18%  Similarity=0.315  Sum_probs=52.0

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ..+++.++...|.+.+.+.|++|+++++|+++.. ++.+.|++.+| +++|+.||.|.|..|.
T Consensus       178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA  238 (460)
T ss_pred             eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence            4589999999999999999999999999999875 45567777666 6999999999998864

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.81  E-value=4.5e-08  Score=103.26  Aligned_cols=136  Identities=21%  Similarity=0.246  Sum_probs=82.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEE-cCCCCCCCccc----ccCCHHH-HHHHHHcCCCCcccchhhhhhccCCCcc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIV-ERNTLKGREQE----WNISRKE-LLELVESGILVEDDIDEATATKFNPNRC  184 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLl-Er~~~~~~~r~----~~Is~~~-l~~L~~lGl~~~~~ie~~i~~~~~~~~v  184 (546)
                      |||||||| +|+.+|+++|+.|.+|+|+ ++........+    ..+.... .+.++.+|=+    +-.+.  +.  ..+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~----m~~~a--D~--~~i   72 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL----MGRAA--DE--TGI   72 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S----HHHHH--HH--HEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH----HHHHH--hH--hhh
Confidence            89999976 6999999999999999999 33322221111    1233332 2345555521    11110  10  112


Q ss_pred             cccC----C-ccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEec
Q 009027          185 GFEG----K-GEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAM  257 (546)
Q Consensus       185 ~f~~----~-~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~AD  257 (546)
                      +|.-    + ...+   .+...+|+..+.+.+.+.+.+.++ +|+ ..+|+++..+++.+. |.+.+|..+.|+.||.|+
T Consensus        73 ~~~~lN~skGpav~---a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaT  148 (392)
T PF01134_consen   73 HFRMLNRSKGPAVH---ALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLAT  148 (392)
T ss_dssp             EEEEESTTS-GGCT---EEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-T
T ss_pred             hhhcccccCCCCcc---chHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEec
Confidence            2211    1 1111   123479999999999999988665 665 578999988887764 777789999999999999


Q ss_pred             CC
Q 009027          258 GN  259 (546)
Q Consensus       258 G~  259 (546)
                      |.
T Consensus       149 Gt  150 (392)
T PF01134_consen  149 GT  150 (392)
T ss_dssp             TT
T ss_pred             cc
Confidence            99

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.78  E-value=1.4e-06  Score=94.89  Aligned_cols=70  Identities=14%  Similarity=0.183  Sum_probs=57.3

Q ss_pred             cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---Cc--EEEcCEEEEecCCChH-HHHHhc
Q 009027          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSP-VVKQIR  268 (546)
Q Consensus       199 ~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g~--~i~ArlVV~ADG~~S~-vr~ql~  268 (546)
                      .+.+|..+|.-.+...|.++|++++..++|+++..+++-+-|++.|   |+  +++|+.||-|.|.++- +++..+
T Consensus       158 D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~  233 (532)
T COG0578         158 DGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAG  233 (532)
T ss_pred             cceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhc
Confidence            3568889999999999999999999999999999988844466544   33  7999999999999997 455443

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.77  E-value=1.1e-07  Score=96.77  Aligned_cols=111  Identities=23%  Similarity=0.366  Sum_probs=80.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      |||+||||| +|+++|..|++.|++|+|+|+....+.   +...          .     .+     ..+ +      + 
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~----------~-----~~-----~~~-~------~-   49 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQ---LTTT----------T-----EV-----ENY-P------G-   49 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcc---eeec----------c-----cc-----ccc-C------C-
Confidence            799999965 699999999999999999998863221   1000          0     00     000 0      0 


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                              +...+....+...+.+.+.+.|++++. ++|++++.+++.+.|+++++.++++|.||.|+|...
T Consensus        50 --------~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        50 --------FPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             --------CCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence                    001123345667777788888999988 899999888888888887778999999999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.76  E-value=4.6e-07  Score=99.24  Aligned_cols=71  Identities=10%  Similarity=0.039  Sum_probs=56.3

Q ss_pred             ceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEe-CCeEEEEE---cCCc--EEEcCEEEEecCCChH-HHHHhcCC
Q 009027          200 LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTY-ENAAVLLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIRSG  270 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~-~dgv~V~~---~~g~--~i~ArlVV~ADG~~S~-vr~ql~~~  270 (546)
                      ..||...+.+.|.+.+.+ .|++++++++|+++... +++|+|.+   .++.  +++|++||-|.|.+|. +++.+|..
T Consensus       179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~  257 (497)
T PRK13339        179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP  257 (497)
T ss_pred             eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence            458999999999999864 48999999999999877 66777763   3342  6999999888888775 77777754

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.75  E-value=2.1e-07  Score=105.14  Aligned_cols=68  Identities=18%  Similarity=0.180  Sum_probs=54.2

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC--CeE-EEEE---cCCc--EEEcCEEEEecCCChH-HHHHhc
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAA-VLLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIR  268 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dgv-~V~~---~~g~--~i~ArlVV~ADG~~S~-vr~ql~  268 (546)
                      .+|+.++...|.+.+.+.|++++..++|+++..++  +.+ .|.+   .+++  +++|+.||.|.|.+|. +++.++
T Consensus       228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g  304 (627)
T PLN02464        228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD  304 (627)
T ss_pred             EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence            47999999999999999999999999999998763  433 2333   1333  6899999999999987 666664

>PLN02661 Putative thiazole synthesis

Probab=98.71  E-value=2.8e-07  Score=95.98  Aligned_cols=130  Identities=17%  Similarity=0.306  Sum_probs=82.1

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCCcccchhhhhhc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATK  178 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~~~~~~~r~~~---------Is~~~l~~L~~lGl~~~~~ie~~i~~~  178 (546)
                      ++||+||||| +|+++|+.|++. |++|+||||...++.. .|.         +.....+.|+++|+-            
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG-~~~gg~l~~~~vv~~~a~e~LeElGV~------------  158 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAHLFLDELGVP------------  158 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc-eeeCcccccccccccHHHHHHHHcCCC------------
Confidence            6899999965 699999999976 9999999998766421 110         111122334444431            


Q ss_pred             cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeE---EEE----EcC--C---
Q 009027          179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA---VLL----LAE--G---  245 (546)
Q Consensus       179 ~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv---~V~----~~~--g---  245 (546)
                             |+..      +.+....+...+...|.+++.+ .|++++.++.++++..+++.+   ++.    ..+  +   
T Consensus       159 -------fd~~------dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~  225 (357)
T PLN02661        159 -------YDEQ------ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSC  225 (357)
T ss_pred             -------cccC------CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCc
Confidence                   1100      0000111334455677776654 688999999999998776642   221    111  1   


Q ss_pred             ---cEEEcCEEEEecCCChHHHH
Q 009027          246 ---KILSSHLIIDAMGNFSPVVK  265 (546)
Q Consensus       246 ---~~i~ArlVV~ADG~~S~vr~  265 (546)
                         ..|+|+.||.|+|+..++..
T Consensus       226 ~dp~~I~AkaVVlATGh~g~~ga  248 (357)
T PLN02661        226 MDPNVMEAKVVVSSCGHDGPFGA  248 (357)
T ss_pred             cceeEEECCEEEEcCCCCCcchh
Confidence               26899999999998877554

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.69  E-value=2.3e-07  Score=94.18  Aligned_cols=150  Identities=21%  Similarity=0.239  Sum_probs=94.5

Q ss_pred             CcccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCCCc----ccccCCHHHH-------HHHHHcCCCCc--------
Q 009027          109 GTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE----QEWNISRKEL-------LELVESGILVE--------  168 (546)
Q Consensus       109 ~~yDVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~~~----r~~~Is~~~l-------~~L~~lGl~~~--------  168 (546)
                      ..+||||||+|+ |+++|+.||++|.++++||+.++|-..    ..--|-+.+-       -.++.+..|-.        
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~   85 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK   85 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence            368999999875 999999999999999999999887421    0111111110       00111111100        


Q ss_pred             ---------------ccchhhhh------------------hccCCCcccccCCccccccccccceeCHHHHHHHHHHHH
Q 009027          169 ---------------DDIDEATA------------------TKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRF  215 (546)
Q Consensus       169 ---------------~~ie~~i~------------------~~~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a  215 (546)
                                     .+++++..                  ..| |..+.+..+. ...-+..+-.+.+.+-..+|..++
T Consensus        86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~f-P~~~~l~d~~-~G~~n~~gGvi~a~kslk~~~~~~  163 (399)
T KOG2820|consen   86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRF-PSNIPLPDGW-QGVVNESGGVINAAKSLKALQDKA  163 (399)
T ss_pred             ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhC-CCCccCCcch-hhcccccccEeeHHHHHHHHHHHH
Confidence                           01111100                  011 1122222211 111122344577888899999999


Q ss_pred             HhcCCEEEeCceEEEEEE---eCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          216 ISLGGVIFEGYSVSSICT---YENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       216 ~~~G~~v~~~t~v~~i~~---~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      +++|+.++.+..+..+..   ++.++.|.+++|..+.|+=+|-+.|++
T Consensus       164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW  211 (399)
T KOG2820|consen  164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW  211 (399)
T ss_pred             HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence            999999999999987763   445788888899899999999999976

>TIGR00275 flavoprotein, HI0933 family

Probab=98.68  E-value=1.7e-07  Score=100.36  Aligned_cols=154  Identities=21%  Similarity=0.254  Sum_probs=90.7

Q ss_pred             EEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc------ccccCCHH-HHH-HHHHcCCCCcccchhhhhhccCCC-c
Q 009027          114 IVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRK-ELL-ELVESGILVEDDIDEATATKFNPN-R  183 (546)
Q Consensus       114 IIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~------r~~~Is~~-~l~-~L~~lGl~~~~~ie~~i~~~~~~~-~  183 (546)
                      ||||| ++|+++|+.++++|++|+|+||++.++.+      ...|++.. ... .....+- ....+.... ..|... .
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~d~   78 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPR-NGKFLRSAL-SRFSNKDL   78 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCC-CcHHHHHHH-HhCCHHHH
Confidence            57785 57999999999999999999998866532      01122211 011 1111110 000011100 111100 0


Q ss_pred             ccccC--Ccccccc---ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          184 CGFEG--KGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       184 v~f~~--~~~l~~~---~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                      +.|..  +.++...   ..+...-....+.+.|.+.+.+.|++++.+++|+++..+++.+.|.+ ++.++.|+.||.|+|
T Consensus        79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG  157 (400)
T TIGR00275        79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATG  157 (400)
T ss_pred             HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCC
Confidence            01100  0001100   11111123467888889999999999999999999988777777777 566899999999999


Q ss_pred             CCh-----------HHHHHhcCC
Q 009027          259 NFS-----------PVVKQIRSG  270 (546)
Q Consensus       259 ~~S-----------~vr~ql~~~  270 (546)
                      ..|           .+++++|..
T Consensus       158 ~~s~p~~gs~G~g~~la~~lG~~  180 (400)
T TIGR00275       158 GLSYPQLGSTGDGYEIAESLGHT  180 (400)
T ss_pred             CcccCCCCCCcHHHHHHHHCCCC
Confidence            987           577777654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.68  E-value=6.7e-07  Score=95.81  Aligned_cols=67  Identities=12%  Similarity=0.131  Sum_probs=54.9

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChH-HHHHhc
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIR  268 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~  268 (546)
                      .+++..+.+.|.+.+.+.|++++++++|+++..+++++. |.+. +.+++|+.||.|.|..|. +.+.++
T Consensus       197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g  265 (416)
T PRK00711        197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG  265 (416)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence            468889999999999999999999999999988777764 5554 447999999999999985 444444

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.65  E-value=3.4e-07  Score=101.38  Aligned_cols=113  Identities=25%  Similarity=0.281  Sum_probs=83.4

Q ss_pred             CCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       108 ~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      ..+|||+|||| ++|+++|..|++.|++|+|+|+. ..+.   +.-         ..+      ++     .+    .  
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-~GG~---~~~---------~~~------~~-----~~----~--  258 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-FGGQ---VLD---------TMG------IE-----NF----I--  258 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCe---eec---------cCc------cc-----cc----C--
Confidence            44799999996 56999999999999999999864 2111   100         000      00     00    0  


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                            ..+     ..+...+.+.|.+.+.+.|++++.+++++++...++.+.|.+.++.+++++.||.|+|..+
T Consensus       259 ------~~~-----~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        259 ------SVP-----ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             ------CCC-----CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence                  000     1234567788888998999999999999999888788888888888999999999999975

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.65  E-value=3.4e-07  Score=96.40  Aligned_cols=58  Identities=17%  Similarity=0.145  Sum_probs=47.7

Q ss_pred             ceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ..+++..+...|.+++.+. |++++++++|+++..  +  .|.+++| +++|+.||-|.|..|.
T Consensus       140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~--~v~t~~g-~i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G--TVRTSRG-DVHADQVFVCPGADFE  198 (365)
T ss_pred             eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C--eEEeCCC-cEEeCEEEECCCCChh
Confidence            3589999999999988775 999999999999853  2  5666556 4799999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.65  E-value=6.5e-07  Score=99.63  Aligned_cols=59  Identities=14%  Similarity=0.070  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC----eEEEE-----EcCC-cEEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLL-----LAEG-KILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~-----~~~g-~~i~ArlVV~ADG~~S~v  263 (546)
                      ..+.+.|.+++.+.|++++.++.++++..+++    ++.+.     ..++ ..++|+.||.|+|..|.+
T Consensus       144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~  212 (541)
T PRK07804        144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL  212 (541)
T ss_pred             HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC
Confidence            46778899999889999999999999987654    34443     1233 379999999999998843

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.65  E-value=6.8e-07  Score=98.66  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe---EEEEEcCC--cEEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLLAEG--KILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~~~g--~~i~ArlVV~ADG~~S~  262 (546)
                      ..+.+.|.+.+.+.|++++.+++++++..+++.   +.+...++  .+++|+-||.|+|..+.
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence            457778888888999999999999999876554   33443443  37999999999997664

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.63  E-value=1.4e-06  Score=95.14  Aligned_cols=62  Identities=16%  Similarity=0.315  Sum_probs=53.7

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      -.+||.-+.++|...|.+.|+.|.+++.|+++....|. +-|++..|. |+|..+|.|.|.+..
T Consensus       182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr  244 (856)
T KOG2844|consen  182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAR  244 (856)
T ss_pred             cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHH
Confidence            45899999999999999999999999999999876554 467776674 999999999998865

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.61  E-value=7.6e-07  Score=99.64  Aligned_cols=59  Identities=15%  Similarity=0.362  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EE---EcCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL---LAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~---~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..+...|.+++.+.|++++.++.++++..+++.+. |.   ..+|+  .++|+.||.|+|..|.+
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~  193 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRI  193 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCC
Confidence            35777888888888999999999999987766543 22   23454  69999999999998854

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.58  E-value=1.2e-06  Score=98.70  Aligned_cols=153  Identities=17%  Similarity=0.161  Sum_probs=84.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcc----cccC--------CHHH-HHHHHHc--CCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQ----EWNI--------SRKE-LLELVES--GILVEDDI  171 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r----~~~I--------s~~~-l~~L~~l--Gl~~~~~i  171 (546)
                      ++|||||||| +|+++|+.+++.  |.+|+||||....+...    .+.+        ++.. .+.+...  ++.++.-+
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv   90 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV   90 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence            6899999965 799999999998  99999999987643221    1111        1111 1111111  11111000


Q ss_pred             hhhhh------hccCCCcccccCC--ccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEE---
Q 009027          172 DEATA------TKFNPNRCGFEGK--GEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV---  239 (546)
Q Consensus       172 e~~i~------~~~~~~~v~f~~~--~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~---  239 (546)
                      +....      .......+.|...  ..+.........++...+.+.|.+++.+.| ++++.++.++++..+++.+.   
T Consensus        91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~  170 (608)
T PRK06854         91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAV  170 (608)
T ss_pred             HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence            00000      0000001122100  000000000011345678888888888876 89999999999987666432   


Q ss_pred             E-EEcCCc--EEEcCEEEEecCCChH
Q 009027          240 L-LLAEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       240 V-~~~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      + ...+++  .++|+.||.|+|..+.
T Consensus       171 ~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        171 GFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             EEEccCCcEEEEECCEEEECCCchhh
Confidence            2 233453  7999999999998764

>TIGR00551 nadB L-aspartate oxidase

Probab=98.58  E-value=8.4e-07  Score=97.51  Aligned_cols=60  Identities=13%  Similarity=0.142  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE-EEEcC-C--cEEEcCEEEEecCCChHH
Q 009027          204 PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE-G--KILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       204 ~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~~-g--~~i~ArlVV~ADG~~S~v  263 (546)
                      ...+...|.+++.+ .|+++++++.++++..+++.+. |.+.+ +  ..++|+.||.|+|..|.+
T Consensus       127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       127 GREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL  191 (488)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence            45688889999887 6899999999999987665544 33332 3  379999999999999874

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.56  E-value=1.1e-06  Score=98.51  Aligned_cols=59  Identities=14%  Similarity=0.152  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~----V~~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..+...|.+++.+. +++++.++.++++..+++.+.    +...+|+  .++|+.||.|+|..|.+
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l  198 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  198 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence            35777888887775 789999999999988766543    2334553  79999999999999865

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=8.6e-07  Score=91.32  Aligned_cols=112  Identities=25%  Similarity=0.318  Sum_probs=77.9

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~r-VlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .|||||||| |+|+++|..++|+|++ ++|+|+....+..                ..+.  +     ...|    ..|.
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~----------------~~~~--~-----veny----pg~~   55 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL----------------TKTT--D-----VENY----PGFP   55 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcc----------------ccce--e-----ecCC----CCCc
Confidence            699999995 6799999999999999 6677665443211                0000  0     0111    0111


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                                  -.+.-..|.+...+++...|+++.. ..+..++..++.++|.++++. ++||.||.|+|....
T Consensus        56 ------------~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~  116 (305)
T COG0492          56 ------------GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR  116 (305)
T ss_pred             ------------cCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence                        1133456778888888888988877 777777766667888887776 999999999998764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.55  E-value=9.5e-07  Score=97.77  Aligned_cols=113  Identities=25%  Similarity=0.331  Sum_probs=81.1

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      ...|||+||||| +|+++|..|++.|++|+|+|+. ..+...            ...+      ++     .       +
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-~GG~~~------------~~~~------~~-----~-------~  258 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-IGGQVK------------DTVG------IE-----N-------L  258 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCccc------------cCcC------cc-----c-------c
Confidence            446999999964 6999999999999999999742 211100            0000      00     0       0


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      .+     .+     ......+.+.+.+.+.+.|++++.+++|+++..+++.+.|++++|.+++++.||.|+|...
T Consensus       259 ~~-----~~-----~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       259 IS-----VP-----YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             cc-----cC-----CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            00     00     0123456777888888889999999999999887777888887888999999999999874

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07121 hypothetical protein; Validated

Probab=98.55  E-value=2.4e-06  Score=93.95  Aligned_cols=59  Identities=20%  Similarity=0.235  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEE-EEEc-CCc--EEEc-CEEEEecCCChH
Q 009027          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LLLA-EGK--ILSS-HLIIDAMGNFSP  262 (546)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~-V~~~-~g~--~i~A-rlVV~ADG~~S~  262 (546)
                      ...+.+.|.+++++.|++++.+++++++..+++ .++ |.+. +++  +++| +.||.|+|..+.
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence            456888899999999999999999999987654 222 3322 333  6899 999999998774

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.55  E-value=2.1e-06  Score=93.75  Aligned_cols=59  Identities=19%  Similarity=0.192  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE--cCC--cEEEcCEEEEecCCChH
Q 009027          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEG--KILSSHLIIDAMGNFSP  262 (546)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~~g--~~i~ArlVV~ADG~~S~  262 (546)
                      ...+...|.+++++.|++++.+++++++..+++.++ |.+  .++  ..++|+-||.|+|..+.
T Consensus       130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        130 GKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence            346778888899999999999999999987666543 333  233  37899999999997553

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.52  E-value=1.8e-06  Score=92.62  Aligned_cols=64  Identities=23%  Similarity=0.282  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE---cCCc--EEEcCEEEEecCCChH-HHHHh
Q 009027          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEGK--ILSSHLIIDAMGNFSP-VVKQI  267 (546)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~---~~g~--~i~ArlVV~ADG~~S~-vr~ql  267 (546)
                      -..+...|.+.++++|++++.+++++++..+++.|+ |.+   .+|+  +|+|+-||.|+|..+. +.++.
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~  210 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQY  210 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccccccccc
Confidence            456888999999999999999999999999887553 333   2454  7899999999999994 44443

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.50  E-value=1.9e-06  Score=93.25  Aligned_cols=60  Identities=17%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC----eEEEEEcCCc--EEEcCEEEEecCCChH
Q 009027          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~~~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      +...+.+.|.+++.+.|++++.+++++++..+++    ++++...+++  .+.++-||.|+|..|.
T Consensus       128 ~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       128 SGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             CHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            3456888899999999999999999999988654    3334433443  5789999999998876

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.49  E-value=1.9e-06  Score=96.57  Aligned_cols=59  Identities=17%  Similarity=0.363  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~----V~~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..+...|.+++.+.|+++++++.++++..+++.+.    +...+++  .++|+.||.|+|..+.+
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~  199 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV  199 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence            45778888888888999999999999987665432    2333554  69999999999998753

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.49  E-value=1.8e-06  Score=93.41  Aligned_cols=59  Identities=22%  Similarity=0.233  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE-E-EEcCCc--EEEcCEEEEecCCChH
Q 009027          204 PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-L-LLAEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       204 ~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V-~~~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ...+.+.|.+++.+ .|++++++++++++..+++.+. | ...++.  +++|+-||.|+|..+.
T Consensus       127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        127 GKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG  190 (433)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence            34567778888765 5899999999999987665432 1 122443  6999999999998653

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.48  E-value=2.5e-06  Score=95.70  Aligned_cols=59  Identities=12%  Similarity=0.248  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~----V~~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..+...|.+++.+. ++++++++.++++..+++.+.    +...+|+  .++|+.||.|+|..|.+
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence            45778888888764 789999999999988766543    2333553  79999999999998864

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.48  E-value=1.7e-06  Score=95.99  Aligned_cols=141  Identities=18%  Similarity=0.214  Sum_probs=85.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CCccc----ccCCHHH-HHHHHHcCCCCcccchhhhhh---ccC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQE----WNISRKE-LLELVESGILVEDDIDEATAT---KFN  180 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~-~~~r~----~~Is~~~-l~~L~~lGl~~~~~ie~~i~~---~~~  180 (546)
                      ||||||||| +|+.+|..+|+.|.+|+|+|++... +...+    ..+..+. .+.+..+|=.    +..+...   .|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~----~~~~~d~~~i~~r   76 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGL----MGKAADKAGLQFR   76 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccch----HHHHHHhhceehe
Confidence            799999965 6999999999999999999987432 21111    1111121 2233333310    0111100   010


Q ss_pred             CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEe-CCe-EEEEEcCCcEEEcCEEEEec
Q 009027          181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTY-ENA-AVLLLAEGKILSSHLIIDAM  257 (546)
Q Consensus       181 ~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~-~dg-v~V~~~~g~~i~ArlVV~AD  257 (546)
                      .... .. +..++.+   ...+|+..+...+.+.+.+.+ ++++.+ .++++..+ ++. +.|.+.+|..++|+.||.|+
T Consensus        77 ~ln~-sk-gpAV~~~---RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILAT  150 (617)
T TIGR00136        77 VLNS-SK-GPAVRAT---RAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITT  150 (617)
T ss_pred             eccc-CC-CCccccc---HHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEcc
Confidence            0000 00 1112221   246899999999999998884 576654 67777655 333 45777788899999999999


Q ss_pred             CCCh
Q 009027          258 GNFS  261 (546)
Q Consensus       258 G~~S  261 (546)
                      |.++
T Consensus       151 GtfL  154 (617)
T TIGR00136       151 GTFL  154 (617)
T ss_pred             Cccc
Confidence            9994

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.47  E-value=2.6e-06  Score=96.13  Aligned_cols=58  Identities=10%  Similarity=0.207  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeEE---E-EEcCCc--EEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAV---L-LLAEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~---V-~~~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ..+...|.+++.+.|++++.++.++++..+ ++.+.   + ...+|+  .++|+-||.|+|..+.
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  230 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR  230 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence            467888999998899999999999998873 44332   2 223454  7899999999997753

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.47  E-value=2.3e-06  Score=93.37  Aligned_cols=146  Identities=14%  Similarity=0.094  Sum_probs=88.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhcc-----C-C-
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF-----N-P-  181 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~-----~-~-  181 (546)
                      ..+|+||||| +|+++|..|.+.|++|+|+||....+  ..|+.++..-.  ..+++-+....  .....|     + + 
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG--G~W~~~~~~~~--d~~~~~~~~~~--~~s~~Y~~L~tn~p~   83 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG--GLWVYTPKSES--DPLSLDPTRSI--VHSSVYESLRTNLPR   83 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc--ceeecCCCcCC--CccccCCCCcc--cchhhhhhhhccCCH
Confidence            5799999965 69999999999999999999987655  33554322100  01121110000  000011     0 0 


Q ss_pred             CcccccC---Ccccc-ccccccceeCHHHHHHHHHHHHHhcCCE--EEeCceEEEEEEeCCeEEEEEcCC--c--EEEcC
Q 009027          182 NRCGFEG---KGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYENAAVLLLAEG--K--ILSSH  251 (546)
Q Consensus       182 ~~v~f~~---~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~--v~~~t~v~~i~~~~dgv~V~~~~g--~--~i~Ar  251 (546)
                      ....|.+   ..... .......-.....+.+.|.+.+...|..  |+.+++|+++...++.|.|++.++  .  +..+|
T Consensus        84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d  163 (461)
T PLN02172         84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD  163 (461)
T ss_pred             hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence            0011111   00000 0000001134567889999999888886  899999999998888899988642  2  46789


Q ss_pred             EEEEecCCCh
Q 009027          252 LIIDAMGNFS  261 (546)
Q Consensus       252 lVV~ADG~~S  261 (546)
                      .||.|.|+.|
T Consensus       164 ~VIvAtG~~~  173 (461)
T PLN02172        164 AVVVCNGHYT  173 (461)
T ss_pred             EEEEeccCCC
Confidence            9999999865

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.47  E-value=2.2e-06  Score=96.13  Aligned_cols=58  Identities=14%  Similarity=0.118  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE---E-EEcCCc--EEEcCEEEEecCCChHH
Q 009027          206 KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       206 ~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~---V-~~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      .+...|.+++.+ .|++++.++.++++..+++.+.   + ...+++  .++|+.||.|+|..+.+
T Consensus       138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~  202 (577)
T PRK06069        138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL  202 (577)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence            466778887766 5899999999999987665432   2 223554  68999999999998654

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.44  E-value=3.7e-06  Score=94.71  Aligned_cols=58  Identities=14%  Similarity=0.299  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-E---EE-EEcCCc--EEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VL-LLAEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V-~~~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ..+...|.+++.+.|+++++++.++++..++++ |   .+ ...+|+  .+.|+-||-|+|..+.
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  213 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR  213 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence            357788888888889999999999999876533 3   22 123454  7999999999998764

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.38  E-value=6.6e-06  Score=86.98  Aligned_cols=68  Identities=16%  Similarity=0.167  Sum_probs=53.7

Q ss_pred             ceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH-HHHhc
Q 009027          200 LGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV-VKQIR  268 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v-r~ql~  268 (546)
                      ..+++..+...|.+.+.+.|+ .+..++.+..+....+.+.|.+.+|+ ++|+.||-|.|..|.. ...++
T Consensus       151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~  220 (387)
T COG0665         151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG  220 (387)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence            358899999999999999996 66668888888764256777776776 9999999999999874 33444

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.38  E-value=4.2e-06  Score=93.49  Aligned_cols=110  Identities=17%  Similarity=0.301  Sum_probs=76.0

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .|||+|||| ++|+++|..|+++|++|+|+|+....+..   ..+             .  .+     ..+       .+
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~---~~~-------------~--~i-----~~~-------pg   53 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQI---TIT-------------S--EV-----VNY-------PG   53 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceE---Eec-------------c--cc-----ccC-------CC
Confidence            699999996 56889999999999999999987543311   000             0  00     000       00


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      .          ..+....+.+.+.+.+.+.|++++ .++|+++..+++.+.|.+.++ .+.++.||-|+|..+
T Consensus        54 ~----------~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p  114 (555)
T TIGR03143        54 I----------LNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASP  114 (555)
T ss_pred             C----------cCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCcc
Confidence            0          012334566777778888899875 678888887666677777555 689999999999875

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.37  E-value=6.4e-06  Score=93.23  Aligned_cols=58  Identities=14%  Similarity=0.229  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeC-CeEE-EEE---cCCc--EEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV-LLL---AEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~-V~~---~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ..+...|.+++.+.|++++.++.++++..++ +.+. |.+   .+|+  .+.|+-||.|+|..+.
T Consensus       187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  251 (635)
T PLN00128        187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR  251 (635)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence            4577888888888899999999999987763 3332 222   2453  7899999999998864

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.37  E-value=1e-05  Score=90.51  Aligned_cols=58  Identities=12%  Similarity=0.174  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE---cCCc--EEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~---~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ..+...|.+++.+.|+++++++.++++..+++.|+ |..   .+++  .++|+-||-|+|..+.
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  199 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGM  199 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCcccc
Confidence            35677888888888999999999999988765443 222   1333  6899999999998774

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.36  E-value=6.5e-06  Score=90.01  Aligned_cols=152  Identities=22%  Similarity=0.282  Sum_probs=83.3

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc--ccccCC--------HH--HHHHHHHc-CCCCcccchhhhh
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE--QEWNIS--------RK--ELLELVES-GILVEDDIDEATA  176 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~--r~~~Is--------~~--~l~~L~~l-Gl~~~~~ie~~i~  176 (546)
                      +||||||| ++|+++|+.++++|.+|+||||....+..  ...+|.        +.  ..+.+..- ++.++.-++....
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            79999996 57999999999999999999998543211  011111        11  00111111 1211110111000


Q ss_pred             -----hcc-CCCcccccCCcc---ccccccccc-eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCC
Q 009027          177 -----TKF-NPNRCGFEGKGE---IWVEDILNL-GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG  245 (546)
Q Consensus       177 -----~~~-~~~~v~f~~~~~---l~~~~~l~~-~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g  245 (546)
                           .++ ....+.|.....   -..+..+.. ......+.+.|.+++.+.|++++.. .++.+..+++.+. |.+ ++
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g  159 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DG  159 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CC
Confidence                 000 000112211000   000000000 0123468888999998899999876 7888876655554 334 56


Q ss_pred             cEEEcCEEEEecCCChHHH
Q 009027          246 KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       246 ~~i~ArlVV~ADG~~S~vr  264 (546)
                      ..++|+-||.|+|..|.+.
T Consensus       160 ~~i~a~~VVLATGG~~~~~  178 (466)
T PRK08401        160 ELLKFDATVIATGGFSGLF  178 (466)
T ss_pred             EEEEeCeEEECCCcCcCCC
Confidence            6899999999999998754

>PRK08275 putative oxidoreductase; Provisional

Probab=98.36  E-value=6.9e-06  Score=91.72  Aligned_cols=59  Identities=8%  Similarity=0.129  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeE---EE-EEcCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv---~V-~~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..+.+.|.+++.+.|++++.++.++++..+ ++.+   .+ ...+|+  .++|+.||.|+|..+.+
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~  202 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL  202 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence            357788999998899999999999999876 3322   22 123454  68999999999998754

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.36  E-value=1.8e-06  Score=92.17  Aligned_cols=113  Identities=20%  Similarity=0.089  Sum_probs=75.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC---------cccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR---------EQEWNISRKELLELVESGILVEDDIDEATATKFN  180 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~---------~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~  180 (546)
                      -||+||||| +|+.+|+.||++|++|+|+|+.+.+..         .+..+.|..+...+...|+|.. +++..-.    
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~-em~~lgs----   77 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKE-EMRRLGS----   77 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHH-HHHHhcc----
Confidence            589999976 699999999999999999998765532         1233566677777888898852 2221100    


Q ss_pred             CCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEE
Q 009027          181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSIC  232 (546)
Q Consensus       181 ~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~  232 (546)
                         +.+........|..-.+.+|+..|.+.|.+++.+. +++++ ..+|+++.
T Consensus        78 ---l~~~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~  126 (436)
T PRK05335         78 ---LIMEAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP  126 (436)
T ss_pred             ---hheecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence               11221111111221124689999999999999876 46777 56888774

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.35  E-value=6.2e-06  Score=91.90  Aligned_cols=58  Identities=17%  Similarity=0.138  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EE---EEE-cCCc--EEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV---LLL-AEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~---V~~-~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ..+...|.+++.+.|++++.++.++++..++++ ++   +.. .+++  .++|+-||.|+|..+.
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            456778888888889999999999999877664 32   222 3454  6999999999998764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.35  E-value=8e-06  Score=92.63  Aligned_cols=55  Identities=7%  Similarity=0.184  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEcCEEEEecCCChH
Q 009027          208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---~g~--~i~ArlVV~ADG~~S~  262 (546)
                      .+.|.+++.+.|++++.++.++++..+++.++ |.+.   +|+  .+.|+-||.|+|..+.
T Consensus       173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~  233 (640)
T PRK07573        173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN  233 (640)
T ss_pred             HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence            35666677788999999999999987665433 3222   453  6899999999998765

>PRK07233 hypothetical protein; Provisional

Probab=98.33  E-value=0.00057  Score=73.32  Aligned_cols=55  Identities=18%  Similarity=0.174  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      .+-+.|.+.+.+.|++|+.+++|+++..+++.+++...++++++|+.||-|....
T Consensus       199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence            3567777788888999999999999998888776555567789999999998864

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.31  E-value=1.2e-05  Score=90.33  Aligned_cols=59  Identities=20%  Similarity=0.305  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeC----CeE---EE-EEcCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~----dgv---~V-~~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..+...|.+++.+.|+++++++.++++..++    +.+   .+ ...+++  .++|+-||.|+|..+.+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  208 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV  208 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence            4677889999988999999999999998665    322   22 223454  68999999999998743

>PLN02815 L-aspartate oxidase

Probab=98.30  E-value=9e-06  Score=91.31  Aligned_cols=158  Identities=15%  Similarity=0.201  Sum_probs=83.6

Q ss_pred             CCCCCCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccc---cC--------CHHH-HHHHHHcC--CCCc
Q 009027          104 SDKAVGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI--------SRKE-LLELVESG--ILVE  168 (546)
Q Consensus       104 ~~~~~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~---~I--------s~~~-l~~L~~lG--l~~~  168 (546)
                      .++...++||||||| ++|+++|+.+++.| +|+||||....+....|   +|        |+.. ++.....|  +.++
T Consensus        23 ~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~  101 (594)
T PLN02815         23 DDESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDE  101 (594)
T ss_pred             ccCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcH
Confidence            344555799999996 57999999999999 99999998875432111   11        1111 11111111  2111


Q ss_pred             ccchhhhhh-----cc-CCCcccccCCc--ccc-------c-cccc-cceeCHHHHHHHHHHHHHhc-CCEEEeCceEEE
Q 009027          169 DDIDEATAT-----KF-NPNRCGFEGKG--EIW-------V-EDIL-NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSS  230 (546)
Q Consensus       169 ~~ie~~i~~-----~~-~~~~v~f~~~~--~l~-------~-~~~l-~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~  230 (546)
                      .-++..+..     ++ ....+.|....  .+.       . +..+ .....-..+...|.+++.+. |+++++++.+++
T Consensus       102 ~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~  181 (594)
T PLN02815        102 ETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID  181 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhe
Confidence            101110000     00 00011221100  000       0 0000 00012345777888888765 889999999999


Q ss_pred             EEEeCCe----EE-EE---EcCCc--EEEcCEEEEecCCChH
Q 009027          231 ICTYENA----AV-LL---LAEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       231 i~~~~dg----v~-V~---~~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      +..++++    ++ |.   ..+|+  .+.|+-||-|+|..+.
T Consensus       182 Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  223 (594)
T PLN02815        182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH  223 (594)
T ss_pred             eeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence            9875432    21 22   22454  6899999999998764

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.29  E-value=2.8e-05  Score=87.33  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE---EEEcCCc-EEEc-CEEEEecCCChH
Q 009027          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSS-HLIIDAMGNFSP  262 (546)
Q Consensus       203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V~~~~g~-~i~A-rlVV~ADG~~S~  262 (546)
                      +...|...|.+++++.|++++.+++|+++..+++.++   +...++. +++| +.||-|.|..+.
T Consensus       215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        215 NGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            3445667888899999999999999999887655432   3333343 6899 888889988875

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.29  E-value=1.1e-05  Score=87.36  Aligned_cols=55  Identities=18%  Similarity=0.220  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEcCEEEEecCCCh
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      |-+.+.+.++..|++++.+++|++|..++++  +.|++++|++++|+.||.......
T Consensus       234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p  290 (443)
T PTZ00363        234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFP  290 (443)
T ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccc
Confidence            4556666777789999999999999877654  457777899999999998655543

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.28  E-value=1.7e-05  Score=89.27  Aligned_cols=59  Identities=14%  Similarity=0.229  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-E---EEE-EcCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VLL-LAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V~-~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..|...|.+++.+.|++++.++.++++..++++ +   .+. ..+++  .+.|+-||.|+|..+.+
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI  213 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence            357788888888899999999999999876433 2   221 22453  68999999999988754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.27  E-value=6.8e-06  Score=89.31  Aligned_cols=137  Identities=20%  Similarity=0.264  Sum_probs=72.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||+||||| +|.++|..++++|++|+|+|+....+.+..++ +..+.+-.-  ..+..  .++..  ..+.   +...
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~--a~~~~--~~~~~--~~~g---~~~~   72 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYG--STFGG--EFEDA--AGYG---WTVG   72 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHH--HHHHH--HHhhh--HhcC---cCCC
Confidence            6999999965 68889999999999999999976555332111 222221100  00000  00000  0000   0000


Q ss_pred             CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                       ...+..+..... .+  -..+.+.+.+.+.+.|++++.+ ++..+  +.+.+.|. .+|++++++.||-|+|...
T Consensus        73 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v--~~~~v~v~-~~g~~~~~d~lIiATGs~p  142 (446)
T TIGR01424        73 -KARFDWKKLLQK-KDDEIARLSGLYKRLLANAGVELLEG-RARLV--GPNTVEVL-QDGTTYTAKKILIAVGGRP  142 (446)
T ss_pred             -CCCcCHHHHHHH-HHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEEEEe-cCCeEEEcCEEEEecCCcC
Confidence             000000000000 00  1123445556667789998876 45444  33445554 3567899999999999763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.26  E-value=1.6e-05  Score=87.99  Aligned_cols=57  Identities=18%  Similarity=0.231  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE--cCCc--EEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ..+.+.|.+++. .|+++++++.++++..+++.+. |.+  .+++  .++|+.||.|+|..+.
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            456777777775 6899999999999976655433 322  2333  7899999999999774

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.25  E-value=1.9e-05  Score=89.39  Aligned_cols=36  Identities=33%  Similarity=0.521  Sum_probs=32.0

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ++|||||||| +|+++|+.+++.|.+|+||||....+
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            6999999965 69999999999999999999987654

>PRK09897 hypothetical protein; Provisional

Probab=98.25  E-value=1.2e-05  Score=88.99  Aligned_cols=150  Identities=12%  Similarity=0.079  Sum_probs=80.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccc-hhhhhhccCCCccc-
Q 009027          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDI-DEATATKFNPNRCG-  185 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~i-e~~i~~~~~~~~v~-  185 (546)
                      .+|+||||| .|+++|..|++.  .++|.|+|++..++....|.....+-..+....-.+.... .....+- ...... 
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl-~~~~~~~   80 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWL-QKQEDSH   80 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHh-hhhhHHH
Confidence            579999965 599999999865  4699999998766644444331111111111100000000 0000000 000000 


Q ss_pred             cc--CC--ccccccccccceeCHHHH---HHHHHHHHHhcC--CEEEeCceEEEEEEeCCeEEEEEcC-CcEEEcCEEEE
Q 009027          186 FE--GK--GEIWVEDILNLGVSPAKL---IEIVKKRFISLG--GVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIID  255 (546)
Q Consensus       186 f~--~~--~~l~~~~~l~~~V~~~~L---~~~L~~~a~~~G--~~v~~~t~v~~i~~~~dgv~V~~~~-g~~i~ArlVV~  255 (546)
                      +.  +.  ..+.....+...+-...|   .+.+.+.+.+.|  ++++..++|+++..+++++.|++.+ +..+.|+.||.
T Consensus        81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL  160 (534)
T PRK09897         81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI  160 (534)
T ss_pred             HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence            00  00  000000011111121122   223445566666  6888899999999999999998855 46899999999


Q ss_pred             ecCCCh
Q 009027          256 AMGNFS  261 (546)
Q Consensus       256 ADG~~S  261 (546)
                      |+|+..
T Consensus       161 AtGh~~  166 (534)
T PRK09897        161 ATGHVW  166 (534)
T ss_pred             CCCCCC
Confidence            999753

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.24  E-value=1.7e-05  Score=86.57  Aligned_cols=137  Identities=27%  Similarity=0.248  Sum_probs=71.8

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhh-hhccCCCccc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEAT-ATKFNPNRCG  185 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i-~~~~~~~~v~  185 (546)
                      .+||||||||| +|+++|..++++|++|+|+||....+.+-.++ +..+.+..  ...+     ++... ...+.   +.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~--~~~~-----~~~~~~~~~~g---~~   72 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLH--AAER-----ADEARHSEDFG---IK   72 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHH--hhhH-----HHHHHHHHhcC---cc
Confidence            37999999965 68888999999999999999987555321111 22222110  0000     00000 00110   00


Q ss_pred             ccCCccccccccc---cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEcCEEEEecCCCh
Q 009027          186 FEGKGEIWVEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFS  261 (546)
Q Consensus       186 f~~~~~l~~~~~l---~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-g~~i~ArlVV~ADG~~S  261 (546)
                      .. ...+......   ...+  ..+..-+.+.+.+.|++++.++. +.  .++..+.|...+ ++++++|.||-|+|...
T Consensus        73 ~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gv~~~~g~~-~~--~~~~~~~v~~~~~~~~~~~d~lViAtGs~p  146 (462)
T PRK06416         73 AE-NVGIDFKKVQEWKNGVV--NRLTGGVEGLLKKNKVDIIRGEA-KL--VDPNTVRVMTEDGEQTYTAKNIILATGSRP  146 (462)
T ss_pred             cC-CCccCHHHHHHHHHHHH--HHHHHHHHHHHHhCCCEEEEEEE-EE--ccCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence            00 0000000000   0001  11222345556677999887743 22  345556666433 46899999999999864

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.24  E-value=1.9e-05  Score=88.76  Aligned_cols=59  Identities=10%  Similarity=0.210  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-E---EE-EEcCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VL-LLAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V-~~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..|...|.+++.+.|++++.++.++++..++++ +   .+ ...+|+  .++|+-||-|+|..+.+
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            457778888888889999999999999875443 2   22 123454  68999999999988753

>PTZ00058 glutathione reductase; Provisional

Probab=98.24  E-value=7.2e-06  Score=91.41  Aligned_cols=40  Identities=33%  Similarity=0.422  Sum_probs=33.4

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE  147 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~  147 (546)
                      ..+||||||||| +|..+|..+++.|.+|+||||....+.+
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtC   86 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTC   86 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccc
Confidence            347999999965 6888888999999999999998666643

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.24  E-value=0.001  Score=72.55  Aligned_cols=39  Identities=10%  Similarity=0.159  Sum_probs=34.8

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       220 ~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                      ++|+.+++|++|+.+++++.|++.+|+++.||.||.|.-
T Consensus       239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP  277 (463)
T ss_pred             ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence            479999999999999999999887888899999998873

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.22  E-value=2.4e-05  Score=85.26  Aligned_cols=59  Identities=17%  Similarity=0.232  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCCChHHH
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~i~ArlVV~ADG~~S~vr  264 (546)
                      .+.+.+.+.+++.|++++.+++++++..+++++.+.+.+|  +++.++.||.|.|..+.+.
T Consensus       212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            3556677788888999999999999988888888877666  4799999999999887654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.21  E-value=1.5e-05  Score=89.45  Aligned_cols=57  Identities=25%  Similarity=0.297  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE--cCCc-EEEcC-EEEEecCCChH
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK-ILSSH-LIIDAMGNFSP  262 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~--~~g~-~i~Ar-lVV~ADG~~S~  262 (546)
                      .+.+.|.+++.+.|++++.++.|+++..+++.++ |.+  .++. .+.++ -||-|.|..+.
T Consensus       215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            3556688888889999999999999988766443 333  2343 57884 68888887773

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.21  E-value=2.5e-05  Score=88.80  Aligned_cols=58  Identities=16%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe---EEEEE-cCCc--EEEcCEEEEecCCChHH
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~-~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      .+...|.+++.+.|+++++++.++++..+++.   +++.. .+|+  .+.|+-||-|+|..+.+
T Consensus       159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~  222 (657)
T PRK08626        159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI  222 (657)
T ss_pred             HHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence            45567888888899999999999999876654   33432 3554  57899999999976643

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.20  E-value=6.9e-06  Score=89.91  Aligned_cols=138  Identities=20%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCcccc-cCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEW-NISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~~-~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      .+||||||||| +|..+|..+|++|++|+|||+.. +.+.+-.+ .+..+.+  +....+...  +++.  ..+   .+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l--~~~a~~~~~--~~~~--~~~---g~~   73 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKAL--LHVAKVIEE--AKAL--AEH---GIV   73 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHH--HHHHHHHHH--Hhhh--hhc---Ccc
Confidence            47999999965 68888889999999999999874 44432111 1222221  110010000  0000  000   000


Q ss_pred             ccCCcccccccccc---ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCCC
Q 009027          186 FEGKGEIWVEDILN---LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF  260 (546)
Q Consensus       186 f~~~~~l~~~~~l~---~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~i~ArlVV~ADG~~  260 (546)
                      +.. ..+..+....   -.+  .++.....+.+.+.|++++.++..   ..++..+.|+..+|  .++++|.||-|+|..
T Consensus        74 ~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gV~~~~g~a~---~~~~~~v~v~~~~g~~~~~~~d~lViATGs~  147 (471)
T PRK06467         74 FGE-PKIDIDKMRARKEKVV--KQLTGGLAGMAKGRKVTVVNGLGK---FTGGNTLEVTGEDGKTTVIEFDNAIIAAGSR  147 (471)
T ss_pred             cCC-CCcCHHHHHHHHHHHH--HHHHHHHHHHHHhCCCEEEEEEEE---EccCCEEEEecCCCceEEEEcCEEEEeCCCC
Confidence            000 0000000000   000  112223344556679999877532   23455677776566  479999999999975


Q ss_pred             h
Q 009027          261 S  261 (546)
Q Consensus       261 S  261 (546)
                      .
T Consensus       148 p  148 (471)
T PRK06467        148 P  148 (471)
T ss_pred             C
Confidence            4

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.19  E-value=3.9e-05  Score=85.64  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=30.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++||||||+ ++|+++|+.++++|.+|+||||.+
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            799999996 579999999999999999999988

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.17  E-value=1e-05  Score=87.81  Aligned_cols=130  Identities=22%  Similarity=0.274  Sum_probs=76.1

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~r-VlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .++||+||||| .|+++|.+|.++|.. ++++||+..++.  .|..++.       -++.....   .....|  ....|
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg--~W~~~ry-------~~l~~~~p---~~~~~~--~~~p~   72 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG--TWRYNRY-------PGLRLDSP---KWLLGF--PFLPF   72 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC--cchhccC-------CceEECCc---hheecc--CCCcc
Confidence            37999999976 699999999999999 999999975552  2432100       01110000   000001  00111


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEe--CCeEEEEEcCCcE--EEcCEEEEecCCC
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTY--ENAAVLLLAEGKI--LSSHLIIDAMGNF  260 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~--~dgv~V~~~~g~~--i~ArlVV~ADG~~  260 (546)
                      .     +.+....    ...+.+.+.+.+.+.+.  .+..++.|..+..+  .+.++|+++++.+  ++||.||-|+|..
T Consensus        73 ~-----~~~~~~~----~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~  143 (443)
T COG2072          73 R-----WDEAFAP----FAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHL  143 (443)
T ss_pred             C-----CcccCCC----cccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence            1     0000000    11255666666666655  56666666655544  4489999987664  5699999999996


Q ss_pred             h
Q 009027          261 S  261 (546)
Q Consensus       261 S  261 (546)
                      |
T Consensus       144 ~  144 (443)
T COG2072         144 S  144 (443)
T ss_pred             C
Confidence            5

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.17  E-value=1.9e-05  Score=86.06  Aligned_cols=136  Identities=18%  Similarity=0.186  Sum_probs=70.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||+||||| +|..+|..++++|++|+|+||....+.+-.++ |..+.+  +....+..  .+..  ...+.   +...
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l--~~~a~~~~--~~~~--~~~~g---~~~~   72 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVM--WYASDLAE--RMHD--AADYG---FYQN   72 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHH--HHHHHHHH--HHhH--HhhcC---cccC
Confidence            5999999965 68889999999999999999987666432111 222211  00000000  0000  00000   0000


Q ss_pred             CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      ....+..+..... .+  -..+.+.+...+.+.|++++.++...   .++.  +|.+ ++++++++.||-|+|...
T Consensus        73 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~--~v~v-~~~~~~~d~vIiAtGs~p  141 (450)
T TIGR01421        73 LENTFNWPELKEK-RDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDG--TVEV-NGRDYTAPHILIATGGKP  141 (450)
T ss_pred             CcCccCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCC--EEEE-CCEEEEeCEEEEecCCCC
Confidence            0000000000000 00  01233445556667899999887542   2233  3444 566899999999999764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.17  E-value=1.3e-05  Score=87.68  Aligned_cols=140  Identities=18%  Similarity=0.218  Sum_probs=73.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .||||||||| +|.++|..|+++|++|+|+|+..+.+.+..++ |..+.+-..  ..+..  .++.  ...+   .+...
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~--a~~~~--~~~~--~~~~---g~~~~   74 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHS--AEVFQ--TAKK--ASPF---GISVS   74 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHH--HHHHH--HHHH--HHhc---CccCC
Confidence            6999999965 68889999999999999999986655432211 332221110  00000  0000  0000   00000


Q ss_pred             CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEEEe-----CCeEEEEEcCC--cEEEcCEEEEecC
Q 009027          188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTY-----ENAAVLLLAEG--KILSSHLIIDAMG  258 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-----~dgv~V~~~~g--~~i~ArlVV~ADG  258 (546)
                       ...+..+..... .+  ..++.+...+.+.+.|++++.+. ++.++.+     ++.+.|.+.+|  .++++|.||-|+|
T Consensus        75 -~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATG  151 (472)
T PRK05976         75 -GPALDFAKVQER-KDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATG  151 (472)
T ss_pred             -CCccCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCC
Confidence             000000000000 00  01233333445566789998874 3333322     22677777666  4799999999999


Q ss_pred             CCh
Q 009027          259 NFS  261 (546)
Q Consensus       259 ~~S  261 (546)
                      ...
T Consensus       152 s~p  154 (472)
T PRK05976        152 SRP  154 (472)
T ss_pred             CCC
Confidence            865

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.17  E-value=2.9e-05  Score=87.30  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+|||||||| +|+++|+.++++|.+|+||||....+
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~   39 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR   39 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence            4699999965 79999999999999999999987654

>PRK10262 thioredoxin reductase; Provisional

Probab=98.16  E-value=3.3e-05  Score=80.00  Aligned_cols=112  Identities=12%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      ..+||+||||| +|+++|..|+++|++|+++|+....+..   .             ...  ++     ..+       .
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~---~-------------~~~--~~-----~~~-------~   54 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL---T-------------TTT--EV-----ENW-------P   54 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCce---e-------------cCc--eE-----CCC-------C
Confidence            36999999965 6889999999999999999965432210   0             000  00     000       0


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      +.         ...++...+.+.+.+.+...+.+++.+ ++++++..++.+.++.++ ..++++.||.|.|...
T Consensus        55 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~  117 (321)
T PRK10262         55 GD---------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDS-GEYTCDALIIATGASA  117 (321)
T ss_pred             CC---------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecC-CEEEECEEEECCCCCC
Confidence            00         011233455667777777777777665 567777777777776543 3799999999999874

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.16  E-value=2.1e-05  Score=85.72  Aligned_cols=139  Identities=22%  Similarity=0.264  Sum_probs=72.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCcccc-cCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEW-NISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~~-~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      +|||+||||| +|+.+|..|+++|++|+|+||+. +.+...-+ .+..+.+......  ..  .+++  ...|    ..+
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~--~~--~~~~--~~~~----~~~   74 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLR--LI--GFNQ--NPLY----SSY   74 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHH--HH--HHhh--hhhh----ccc
Confidence            6999999965 68899999999999999999964 44432111 1332222110000  00  0000  0000    000


Q ss_pred             cCCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEcCEEEEecCCCh
Q 009027          187 EGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~ArlVV~ADG~~S  261 (546)
                      .....+..+..+... --...+.+.+.+.+.+.|++++.++. ..  .+...+.|...+|+  ++++|.||-|+|...
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~--~~~~~~~v~~~~g~~~~~~~d~lviATGs~p  149 (461)
T PRK05249         75 RVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRA-RF--VDPHTVEVECPDGEVETLTADKIVIATGSRP  149 (461)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EE--ecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence            000000000000000 00012334455566678999887742 22  34556777776664  799999999999764

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.15  E-value=4e-05  Score=85.73  Aligned_cols=58  Identities=14%  Similarity=0.181  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE-cCCc--EEEc-CEEEEecCCChHHH
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSPVV  264 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~-~~g~--~i~A-rlVV~ADG~~S~vr  264 (546)
                      |...|.+++.+.|++++.+++++++..+++.|+ |.. .+++  .+.| +-||-|+|..+...
T Consensus       219 l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~  281 (564)
T PRK12845        219 LAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM  281 (564)
T ss_pred             HHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence            445677888889999999999999986544332 212 2343  5667 57888999887643

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.15  E-value=1.7e-05  Score=85.71  Aligned_cols=135  Identities=14%  Similarity=0.129  Sum_probs=88.7

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHH----HHHHHcCCCCcccchhhhhhccCCCcc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKEL----LELVESGILVEDDIDEATATKFNPNRC  184 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l----~~L~~lGl~~~~~ie~~i~~~~~~~~v  184 (546)
                      .-+|+|||+ ++|+++|..|.+.|+.|+++||....+.  -|..++.+-    ...+.+-+            .....-.
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG--lW~y~~~~~~~~ss~Y~~l~t------------n~pKe~~   71 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG--LWKYTENVEVVHSSVYKSLRT------------NLPKEMM   71 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc--eEeecCcccccccchhhhhhc------------cCChhhh
Confidence            458999995 5799999999999999999999987652  233221100    00111000            0000011


Q ss_pred             cccCCcccccccc-ccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeC-CeEEEEEcCC----cEEEcCEEEEe
Q 009027          185 GFEGKGEIWVEDI-LNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE-NAAVLLLAEG----KILSSHLIIDA  256 (546)
Q Consensus       185 ~f~~~~~l~~~~~-l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~-dgv~V~~~~g----~~i~ArlVV~A  256 (546)
                      .|.+   +..++. ..+.-+...+.+.|.+-|..-+.  .+.+++++..++... +.|.|.+.++    .+.-+|.||.|
T Consensus        72 ~~~d---fpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVc  148 (448)
T KOG1399|consen   72 GYSD---FPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVC  148 (448)
T ss_pred             cCCC---CCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEc
Confidence            1111   111111 23334566899999999988876  899999999998877 6899988653    37889999999


Q ss_pred             cCCCh
Q 009027          257 MGNFS  261 (546)
Q Consensus       257 DG~~S  261 (546)
                      .|++.
T Consensus       149 tGh~~  153 (448)
T KOG1399|consen  149 TGHYV  153 (448)
T ss_pred             ccCcC
Confidence            99994

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.15  E-value=1.3e-05  Score=89.54  Aligned_cols=56  Identities=14%  Similarity=0.219  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEcC-EEEEecCCChH
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSH-LIIDAMGNFSP  262 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~-~g~--~i~Ar-lVV~ADG~~S~  262 (546)
                      +...|.+.+++.|++++.+++++++..+++.|+ |.+. +++  +++|+ -||-|.|..+.
T Consensus       210 ~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~  270 (557)
T PRK07843        210 LAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH  270 (557)
T ss_pred             HHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence            556677788888999999999999988766443 3332 343  68896 46667766554

>PRK12839 hypothetical protein; Provisional

Probab=98.13  E-value=4.9e-05  Score=85.20  Aligned_cols=60  Identities=18%  Similarity=0.163  Sum_probs=42.5

Q ss_pred             CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-e---EEEEEcCCc-EEE-cCEEEEecCCChH
Q 009027          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-A---AVLLLAEGK-ILS-SHLIIDAMGNFSP  262 (546)
Q Consensus       203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-g---v~V~~~~g~-~i~-ArlVV~ADG~~S~  262 (546)
                      +...|...|.+++.+.|++++.++.++++..+++ .   |.+...+++ ++. ++-||-|.|..+.
T Consensus       212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~  277 (572)
T PRK12839        212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN  277 (572)
T ss_pred             cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence            4556677888899999999999999999976543 2   333333444 344 4788888887765

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.11  E-value=1.6e-05  Score=85.34  Aligned_cols=133  Identities=17%  Similarity=0.088  Sum_probs=77.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc---------ccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESGILVEDDIDEATATKFN  180 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~---------r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~  180 (546)
                      .||+||||| +|+.+|..||++|++|+|+|+.+.....         +..+.|.++...+...|+|.. +++..-.    
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~-ei~~lg~----   75 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKT-EMRQLSS----   75 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHH-HHhhcCe----
Confidence            379999977 6999999999999999999987643211         122344445556667777642 2221100    


Q ss_pred             CCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       181 ~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                         ..+........+..-.+.+++..+.+.+.+++.+... ++. ...++++..                .+.||.|+|.
T Consensus        76 ---l~~~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItvi-q~eV~dL~~----------------~d~VViATG~  135 (433)
T TIGR00137        76 ---LIITAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLI-REEVTEIPE----------------EGITVIATGP  135 (433)
T ss_pred             ---eeeehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEE-eeeeEEEcc----------------CCeEEEeCCC
Confidence               1111101111122223467999999999999977643 443 445554431                2357777774


Q ss_pred             --ChHHHHHhc
Q 009027          260 --FSPVVKQIR  268 (546)
Q Consensus       260 --~S~vr~ql~  268 (546)
                        ...+.+++.
T Consensus       136 ~~s~~La~~L~  146 (433)
T TIGR00137       136 LTSPALSEDLK  146 (433)
T ss_pred             CccHHHHHHHH
Confidence              344555553

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.10  E-value=6.7e-05  Score=84.34  Aligned_cols=36  Identities=31%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ++||||||+ ++|+++|+.++++|.+|+||||....+
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g   47 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG   47 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence            689999996 569999999999999999999987654

>PLN02612 phytoene desaturase

Probab=98.09  E-value=0.0018  Score=72.67  Aligned_cols=53  Identities=21%  Similarity=0.323  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEcCEEEEecCC
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv--~V~~~~g~~i~ArlVV~ADG~  259 (546)
                      +-+.|.+.+++.|++|+.+++|++|..++++.  .|.+.+|+++.||.||-|...
T Consensus       310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            33555556667899999999999998876663  366677889999999999754

>PRK06370 mercuric reductase; Validated

Probab=98.08  E-value=3.8e-05  Score=83.89  Aligned_cols=38  Identities=34%  Similarity=0.495  Sum_probs=32.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE  147 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~  147 (546)
                      +||||||||| +|.++|..++++|++|+|+|+....+.+
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c   43 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTC   43 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCce
Confidence            6999999965 6888888999999999999998766643

>PRK14694 putative mercuric reductase; Provisional

Probab=98.08  E-value=3.4e-05  Score=84.43  Aligned_cols=39  Identities=26%  Similarity=0.410  Sum_probs=33.1

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR  146 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~  146 (546)
                      +.+||||||||| +|.++|..|++.|++|+|||+....+.
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGt   43 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGT   43 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccc
Confidence            347999999965 688899999999999999999865553

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.07  E-value=4e-05  Score=85.54  Aligned_cols=56  Identities=16%  Similarity=0.135  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhc-CCEEEeCceEEEEEEeC--Ce---EEEEEcCCc--EEEcCEEEEecCCCh
Q 009027          205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE--NA---AVLLLAEGK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~--dg---v~V~~~~g~--~i~ArlVV~ADG~~S  261 (546)
                      ..+...|.+++.+. |++++.++.++++..++  +.   +.+. .++.  .++|+-||-|+|..+
T Consensus       134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~-~~g~~~~i~AkaVILATGG~~  197 (553)
T PRK07395        134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLL-YQGQITWLRAGAVILATGGGG  197 (553)
T ss_pred             HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEE-ECCeEEEEEcCEEEEcCCCCc
Confidence            45667788877654 89999999999998763  32   2222 3454  589999999999854

>PRK06116 glutathione reductase; Validated

Probab=98.07  E-value=3.4e-05  Score=83.94  Aligned_cols=37  Identities=38%  Similarity=0.600  Sum_probs=31.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR  146 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~  146 (546)
                      +|||+||||| +|+++|..|+++|++|+|+|+....+.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~   41 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGT   41 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhh
Confidence            6999999965 688899999999999999999765553

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.06  E-value=8.7e-05  Score=82.63  Aligned_cols=59  Identities=14%  Similarity=0.176  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHhc-CCEEEeCceEEEEEEeC------CeEE-EEE---cCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE------NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~------dgv~-V~~---~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..+...|.+++.+. |++++.++.++++..++      +.++ |.+   .+++  .+.|+.||.|+|..+.+
T Consensus       138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~  209 (536)
T PRK09077        138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV  209 (536)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence            45777888888765 78999999999987653      3332 222   2343  69999999999998854

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.04  E-value=6e-05  Score=83.44  Aligned_cols=58  Identities=17%  Similarity=0.275  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~-~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ..+.+.|.+++.+. |++++.++.++++..+++.++ |.+. ++.  .++|+-||.|+|..+.
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~  198 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG  198 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence            45778888888765 899999999999876655332 2222 232  6999999999998763

>PLN02507 glutathione reductase

Probab=98.04  E-value=5.2e-05  Score=83.65  Aligned_cols=142  Identities=19%  Similarity=0.194  Sum_probs=72.0

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC----------CCCCCccccc-CCHHHHHHHHHcCCCCcccchhhh
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN----------TLKGREQEWN-ISRKELLELVESGILVEDDIDEAT  175 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~----------~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i  175 (546)
                      ..+||||||||| .|..+|..+++.|.+|+|||+.          .+.+.+-.++ +.-+.+  +....+..  ++.+  
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l--~~~a~~~~--~~~~--   96 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKIL--VYGATFGG--EFED--   96 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHH--HHHHHHHH--HHHH--
Confidence            347999999965 6888888999999999999962          2222211111 221221  10000000  0000  


Q ss_pred             hhccCCCcccccCCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEcCE
Q 009027          176 ATKFNPNRCGFEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHL  252 (546)
Q Consensus       176 ~~~~~~~~v~f~~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~Arl  252 (546)
                      ..++.   +.......+..+..+... -.-.++...+.+.+...|++++.+ ++..  .+++.+.|++.+|+  ++++|.
T Consensus        97 ~~~~G---~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~--vd~~~v~V~~~~g~~~~~~~d~  170 (499)
T PLN02507         97 AKNYG---WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKI--VGPNEVEVTQLDGTKLRYTAKH  170 (499)
T ss_pred             HHhcC---cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEE--ecCCEEEEEeCCCcEEEEEcCE
Confidence            00110   000000000000000000 001123344455566678988877 3332  35567888877765  699999


Q ss_pred             EEEecCCCh
Q 009027          253 IIDAMGNFS  261 (546)
Q Consensus       253 VV~ADG~~S  261 (546)
                      ||-|+|...
T Consensus       171 LIIATGs~p  179 (499)
T PLN02507        171 ILIATGSRA  179 (499)
T ss_pred             EEEecCCCC
Confidence            999999864

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.04  E-value=4.9e-05  Score=84.25  Aligned_cols=137  Identities=20%  Similarity=0.165  Sum_probs=80.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| +|+++|..|.+.|+.|+++||+...+  ..|..+...-.  ....++     +.+. .........|.+  
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG--G~W~~~~~~~~--g~~~~y-----~sl~-~n~sk~~~~fsd--   70 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG--GLWRYTENPED--GRSSVY-----DSLH-TNTSKEMMAFSD--   70 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS--GGGCHSTTCCC--SEGGGS-----TT-B--SS-GGGSCCTT--
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC--ccCeeCCcCCC--Cccccc-----cceE-EeeCchHhcCCC--
Confidence            48999965 68889999999999999999998766  22321100000  000000     0000 000001112221  


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeCC-----eEEEEEcC-Cc--EEEcCEEEEecCCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN-----AAVLLLAE-GK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d-----gv~V~~~~-g~--~i~ArlVV~ADG~~  260 (546)
                       ...|+....-.....+.+.|.+-|...+.  .|+++|+|+++...+|     .|.|++++ |+  +-..|.||.|.|++
T Consensus        71 -fp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~  149 (531)
T PF00743_consen   71 -FPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF  149 (531)
T ss_dssp             -S-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred             -cCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence             11111111225678899999999988776  7899999999988764     68888754 43  34568899999998


Q ss_pred             h
Q 009027          261 S  261 (546)
Q Consensus       261 S  261 (546)
                      +
T Consensus       150 ~  150 (531)
T PF00743_consen  150 S  150 (531)
T ss_dssp             S
T ss_pred             C
Confidence            7

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.03  E-value=7.2e-05  Score=80.92  Aligned_cols=58  Identities=17%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeC-Ce-EE-EEEc-CCcEEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA-AV-LLLA-EGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dg-v~-V~~~-~g~~i~ArlVV~ADG~~S~  262 (546)
                      ..+.+.|.+++++.|++++.+++++++..++ ++ ++ |... ++.+++|+-||.|.|..+.
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA  184 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence            4577889999999999999999999998763 33 32 3333 3358999999999997765

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.03  E-value=6.4e-05  Score=84.07  Aligned_cols=57  Identities=14%  Similarity=0.328  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE-cCCc--EEEcC-EEEEecCCChH
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSSH-LIIDAMGNFSP  262 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~-~~g~--~i~Ar-lVV~ADG~~S~  262 (546)
                      .+...|.+++++.|++++.+++++++..+++.|+ |.. .+++  +++|+ -||-|.|..+.
T Consensus       209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        209 ALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence            4566778888889999999999999987765432 222 2443  68895 57777776665

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.02  E-value=7.1e-05  Score=82.87  Aligned_cols=36  Identities=36%  Similarity=0.421  Sum_probs=31.7

Q ss_pred             cccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ++||||||+|+|+++|+.+|+.|.+|+||||....+
T Consensus         7 ~~DVvVVG~GaGl~aA~~aa~~G~~V~vlEk~~~~G   42 (513)
T PRK12837          7 EVDVLVAGSGGGVAGAYTAAREGLSVALVEATDKFG   42 (513)
T ss_pred             ccCEEEECchHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            789999994488889999999999999999987644

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.99  E-value=0.0001  Score=60.27  Aligned_cols=78  Identities=24%  Similarity=0.298  Sum_probs=61.4

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE  191 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~~  191 (546)
                      |+||||| .|+-+|..|++.|.+|.|+++.+.+. +                 .                          
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~-----------------~--------------------------   37 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-P-----------------G--------------------------   37 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-T-----------------T--------------------------
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-h-----------------h--------------------------
Confidence            7899975 69999999999999999999886322 0                 0                          


Q ss_pred             ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC
Q 009027          192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG  245 (546)
Q Consensus       192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g  245 (546)
                                + ...+.+.+.+.+++.|++++.++.+.++..+++++.|+++||
T Consensus        38 ----------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   38 ----------F-DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             ----------S-SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             ----------c-CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence                      0 023445667777788999999999999999998877888775

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.99  E-value=0.00016  Score=77.22  Aligned_cols=71  Identities=10%  Similarity=0.079  Sum_probs=56.6

Q ss_pred             ceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCe-EEEEEcC---C--cEEEcCEEEEecCCChH-HHHHhcCC
Q 009027          200 LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA-AVLLLAE---G--KILSSHLIIDAMGNFSP-VVKQIRSG  270 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg-v~V~~~~---g--~~i~ArlVV~ADG~~S~-vr~ql~~~  270 (546)
                      .-||-..|-+.|.+.+.+. |+++..+++|+++.+.+|+ |.|.+.+   +  ++++||+|+..-|..|- +.+..|++
T Consensus       176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~  254 (488)
T PF06039_consen  176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP  254 (488)
T ss_pred             ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence            4477778888888888877 8899999999999999887 9888743   2  48999998777776664 77777763

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.97  E-value=6.6e-05  Score=82.33  Aligned_cols=31  Identities=39%  Similarity=0.528  Sum_probs=28.6

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVER  140 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr  140 (546)
                      +|||||||| ++|+++|..+++.|.+|+|||+
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            699999996 5688999999999999999998

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.97  E-value=0.0001  Score=83.08  Aligned_cols=30  Identities=30%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |||||| ++|+++|+.+++.|.+|+||||..
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            689995 579999999999999999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.97  E-value=6.4e-05  Score=84.42  Aligned_cols=59  Identities=19%  Similarity=0.163  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEc-CEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSS-HLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~-~g~--~i~A-rlVV~ADG~~S~v  263 (546)
                      ..+...|.+++++.|++++.+++++++..+++.++ |.+. +++  ++.| +-||-|.|..+.-
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n  284 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH  284 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence            34667788899999999999999999987655443 3332 343  5786 6788899988764

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.97  E-value=0.00016  Score=87.42  Aligned_cols=38  Identities=29%  Similarity=0.318  Sum_probs=32.6

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +.++|||||||| +|+++|+..++.|.+|+||||.+..+
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G  445 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG  445 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence            346999999965 68899999999999999999987654

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.96  E-value=0.00016  Score=81.51  Aligned_cols=57  Identities=21%  Similarity=0.184  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeC---C---eEEE-EEcCCc--EEEcCEEEEecCCCh
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE---N---AAVL-LLAEGK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~---d---gv~V-~~~~g~--~i~ArlVV~ADG~~S  261 (546)
                      ..+...|...+.+.+++++.++.++++..++   +   |+.+ ...+|+  .+.|+-||-|+|..+
T Consensus       126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  191 (614)
T TIGR02061       126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV  191 (614)
T ss_pred             hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence            3455666666767778999999999998764   2   3333 223454  689999999999876

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.95  E-value=0.00016  Score=73.77  Aligned_cols=71  Identities=21%  Similarity=0.385  Sum_probs=53.0

Q ss_pred             eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe---------CC-----------eEEEEEcCC--cEEEcCEEEEecCC
Q 009027          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---------EN-----------AAVLLLAEG--KILSSHLIIDAMGN  259 (546)
Q Consensus       202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---------~d-----------gv~V~~~~g--~~i~ArlVV~ADG~  259 (546)
                      +|+..|...+++++...|+.+..+ +|++...+         ++           ++.|...|+  +++++.++|-|.|+
T Consensus       240 fdpw~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa  318 (509)
T KOG2853|consen  240 FDPWALLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGA  318 (509)
T ss_pred             cCHHHHHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCc
Confidence            688899999999999999876644 56665443         22           244444442  48999999999999


Q ss_pred             ChH-HHHHhcCCCCC
Q 009027          260 FSP-VVKQIRSGRKP  273 (546)
Q Consensus       260 ~S~-vr~ql~~~~~~  273 (546)
                      .|- |++.++++.++
T Consensus       319 ~s~QvArlAgIG~g~  333 (509)
T KOG2853|consen  319 WSGQVARLAGIGKGP  333 (509)
T ss_pred             cHHHHHHHhccCCCC
Confidence            997 88888888554

>PLN02546 glutathione reductase

Probab=97.94  E-value=0.00012  Score=81.69  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=28.5

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcC
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVER  140 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr  140 (546)
                      ..+|||+||||| .|..+|..+|++|.+|+|+|+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            447999999966 577788899999999999996

>TIGR03452 mycothione_red mycothione reductase

Probab=97.93  E-value=4.7e-05  Score=82.96  Aligned_cols=37  Identities=35%  Similarity=0.521  Sum_probs=29.1

Q ss_pred             cccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 009027          110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE  147 (546)
Q Consensus       110 ~yDVIIVGGg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~  147 (546)
                      +|||||||||+|+..| +++..|.||+|||+....+.+
T Consensus         2 ~yD~vvIG~G~~g~~a-a~~~~g~~V~lie~~~~GGtC   38 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIP-DPRFADKRIAIVEKGTFGGTC   38 (452)
T ss_pred             CcCEEEECCCHHHHHH-HHHHCCCeEEEEeCCCCCCee
Confidence            6999999987655555 345679999999998877754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.92  E-value=8.9e-05  Score=81.11  Aligned_cols=37  Identities=41%  Similarity=0.564  Sum_probs=30.9

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC-CCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERN-TLKGR  146 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~-~~~~~  146 (546)
                      +|||+|||| |+|..+|..++++|++|+|||+. .+.+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~   41 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGT   41 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeee
Confidence            599999995 56888999999999999999974 45443

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.90  E-value=0.00011  Score=79.56  Aligned_cols=33  Identities=39%  Similarity=0.539  Sum_probs=29.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      +||||||||| +|+++|..|+++|++|+|+||..
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            6999999965 68889999999999999999975

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.90  E-value=0.00016  Score=76.66  Aligned_cols=106  Identities=17%  Similarity=0.272  Sum_probs=79.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|+++|.+|.++|+.+....                 ..                        
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-----------------~~------------------------  180 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-----------------SL------------------------  180 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-----------------hh------------------------
Confidence            369999976 699999999999999999997642100                 00                        


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHHh
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI  267 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql  267 (546)
                                  . +..+...+.+.+.+.|++++.+++++++..+++++.|++.+|+++.+++||.|.|..+  .+.+++
T Consensus       181 ------------~-~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~  247 (377)
T PRK04965        181 ------------M-PPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA  247 (377)
T ss_pred             ------------C-CHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC
Confidence                        0 0122344566677789999999999999877777888888888999999999999855  466665


Q ss_pred             cCC
Q 009027          268 RSG  270 (546)
Q Consensus       268 ~~~  270 (546)
                      ++.
T Consensus       248 gl~  250 (377)
T PRK04965        248 GLA  250 (377)
T ss_pred             CCC
Confidence            543

>PRK13748 putative mercuric reductase; Provisional

Probab=97.89  E-value=0.00013  Score=81.54  Aligned_cols=37  Identities=30%  Similarity=0.428  Sum_probs=32.0

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR  146 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~  146 (546)
                      +||||||||| .|.++|..|++.|.+|+|||+....+.
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~  135 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGT  135 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceee
Confidence            6999999965 688888899999999999999865554

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.88  E-value=7.9e-05  Score=74.03  Aligned_cols=133  Identities=19%  Similarity=0.229  Sum_probs=74.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-C-----cc-cc-c-----CC------HHHHHHHHHcCCCCccc
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-R-----EQ-EW-N-----IS------RKELLELVESGILVEDD  170 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~-~-----~r-~~-~-----Is------~~~l~~L~~lGl~~~~~  170 (546)
                      .+|+|||+| +|+++|..|+.+|+.|+|+||..-.+ +     .. +| .     +.      .+.++.+.+-|+.+   
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~---   78 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVD---   78 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCcee---
Confidence            369999965 69999999999999999999987432 1     11 11 0     11      12234444444432   


Q ss_pred             chhhhhhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEE
Q 009027          171 IDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILS  249 (546)
Q Consensus       171 ie~~i~~~~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-~~i~  249 (546)
                             .+.+....|.+...-...+...+.=++ .+ ..|.+ +.....+|+.+++|+.+...++.|++++++| +...
T Consensus        79 -------~W~~~~~~~~~~~~~~~~d~~pyvg~p-gm-salak-~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~  148 (331)
T COG3380          79 -------VWTPAVWTFTGDGSPPRGDEDPYVGEP-GM-SALAK-FLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQ  148 (331)
T ss_pred             -------eccccccccccCCCCCCCCCCccccCc-ch-HHHHH-HHhccchhhhhhhhhhheecCCeeEEEecCCCcccc
Confidence                   111222222221000000000011001 11 12222 3334568899999999999999999999665 4677


Q ss_pred             cCEEEEe
Q 009027          250 SHLIIDA  256 (546)
Q Consensus       250 ArlVV~A  256 (546)
                      ++.||-|
T Consensus       149 ~d~vvla  155 (331)
T COG3380         149 FDDVVLA  155 (331)
T ss_pred             cceEEEe
Confidence            8877765

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.86  E-value=1.4e-05  Score=87.99  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCEEEEecCC
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                      .+-++|.+.++++|++|+.+++|++|..+++ ++.+...+|..+.+|.||.+...
T Consensus       225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            4678899999999999999999999998877 56777766778999999987766

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.83  E-value=0.00015  Score=73.26  Aligned_cols=72  Identities=17%  Similarity=0.180  Sum_probs=53.3

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-----EEEEEcCCcEEEcCEEEEecCCChHHH-HHhcCCCC
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-----AVLLLAEGKILSSHLIIDAMGNFSPVV-KQIRSGRK  272 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-----v~V~~~~g~~i~ArlVV~ADG~~S~vr-~ql~~~~~  272 (546)
                      .||-..+-..+.+.+...|..+..+-++.++.+..+.     ++|.-..+++++++.+|.|.|-.|--. ...+....
T Consensus       192 IvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~d  269 (453)
T KOG2665|consen  192 IVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELD  269 (453)
T ss_pred             eeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCC
Confidence            4777777778888899999999999999999776553     333322356999999999999887644 44444443

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.83  E-value=0.00011  Score=81.73  Aligned_cols=37  Identities=35%  Similarity=0.536  Sum_probs=33.2

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR  146 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~  146 (546)
                      +|||||||| ++|+.+|..+|.+|++|+|+||....+.
T Consensus         6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg   43 (562)
T COG1053           6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG   43 (562)
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence            799999995 5799999999999999999999987663

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.82  E-value=2.1e-05  Score=82.52  Aligned_cols=141  Identities=16%  Similarity=0.192  Sum_probs=77.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCC-CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCC-Ccccc
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGF  186 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G-~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~-~~v~f  186 (546)
                      .||+|+|| ||.++++|+.|...+ ++++.+||.+....+.++-+....++.    -.     +..+. +-.+| ...+|
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~----~f-----l~Dlv-t~~~P~s~~sf   71 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQV----SF-----LKDLV-TLRDPTSPFSF   71 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-----T-----TSSSS-TTT-TTSTTSH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCcccc----cc-----ccccC-cCcCCCCcccH
Confidence            59999999 778999999998664 999999998866555443222111100    00     11111 11111 11222


Q ss_pred             cC----Cccccccccc-cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC----eEEEEEc----CCcEEEcCEE
Q 009027          187 EG----KGEIWVEDIL-NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLA----EGKILSSHLI  253 (546)
Q Consensus       187 ~~----~~~l~~~~~l-~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~~~----~g~~i~ArlV  253 (546)
                      ..    ...+..-... .....+..+.+.|.-.+.+....+..+++|++|...++    .+.|.+.    +++++.||-|
T Consensus        72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~v  151 (341)
T PF13434_consen   72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNV  151 (341)
T ss_dssp             HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEE
T ss_pred             HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeE
Confidence            11    1111110000 12356888999998888777767999999999987654    4788873    2458999999


Q ss_pred             EEecCCC
Q 009027          254 IDAMGNF  260 (546)
Q Consensus       254 V~ADG~~  260 (546)
                      |-|.|..
T Consensus       152 Vla~G~~  158 (341)
T PF13434_consen  152 VLATGGQ  158 (341)
T ss_dssp             EE----E
T ss_pred             EECcCCC
Confidence            9999944

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.80  E-value=0.00026  Score=76.79  Aligned_cols=33  Identities=27%  Similarity=0.493  Sum_probs=29.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      +||||||||| +|+.+|..|+++|++|+|||+.+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            5999999965 68899999999999999999874

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.79  E-value=0.00026  Score=77.45  Aligned_cols=38  Identities=32%  Similarity=0.425  Sum_probs=32.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE  147 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~  147 (546)
                      +|||+||||| +|.++|..++++|.+|+|||+....+.+
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c   42 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVC   42 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCce
Confidence            5999999965 6888888999999999999998666543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.77  E-value=0.00041  Score=81.93  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=31.3

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      .++||||||| ++|+++|+.+++.|.+|+||||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            4689999995 5799999999999999999999875

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.77  E-value=0.00024  Score=77.66  Aligned_cols=140  Identities=19%  Similarity=0.252  Sum_probs=74.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc-
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE-  187 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~-  187 (546)
                      -|||||||| .|..+|..++++|.+|+|+||....+.+--++ +..+.+  +....+..  .+..  ...+.   +... 
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l--~~~a~~~~--~~~~--~~~~g---~~~~~   72 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTL--IATAEVRT--ELRR--AAELG---IRFID   72 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHH--HHHHHHHH--HHHH--HHhCC---ccccc
Confidence            389999965 68888889999999999999987666432221 221211  10000000  0000  00000   0000 


Q ss_pred             -CCccccccccccceeC--HHHHHHHHHHHHHhcCCEEEeCceEEEEE--EeCCeEEEEEcCCc--EEEcCEEEEecCCC
Q 009027          188 -GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSIC--TYENAAVLLLAEGK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       188 -~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~~G~~v~~~t~v~~i~--~~~dgv~V~~~~g~--~i~ArlVV~ADG~~  260 (546)
                       ....+..+..... ++  ...+.+.+.+.+.+.|++++.++- +.++  .+++.+.|...+|+  ++++|.||-|+|..
T Consensus        73 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~  150 (466)
T PRK07845         73 DGEARVDLPAVNAR-VKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGAS  150 (466)
T ss_pred             CcccccCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCC
Confidence             0000000000000 00  011233455666778999988753 2222  45667888776665  79999999999987


Q ss_pred             h
Q 009027          261 S  261 (546)
Q Consensus       261 S  261 (546)
                      .
T Consensus       151 p  151 (466)
T PRK07845        151 P  151 (466)
T ss_pred             C
Confidence            5

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.74  E-value=0.00017  Score=77.55  Aligned_cols=66  Identities=18%  Similarity=0.308  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE--EEEcC---Cc--EEEcCEEEEecCCChHHHHHhc
Q 009027          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLAE---GK--ILSSHLIIDAMGNFSPVVKQIR  268 (546)
Q Consensus       203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~~~---g~--~i~ArlVV~ADG~~S~vr~ql~  268 (546)
                      +-.++.-.+.=-|..+|+.+.-..+|.++..++++-+  +.+.|   |+  +|+|+.||-|.|..|---++..
T Consensus       222 nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Md  294 (680)
T KOG0042|consen  222 NDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMD  294 (680)
T ss_pred             chHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhc
Confidence            4456666666677788999988889999887777622  22222   44  7999999999999987444543

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.74  E-value=0.0005  Score=74.27  Aligned_cols=40  Identities=20%  Similarity=0.274  Sum_probs=35.5

Q ss_pred             EEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       221 ~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      +|+.+++|++|..+++++.|.+++|+++.||.||.|.-..
T Consensus       235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~  274 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHP  274 (451)
T ss_pred             eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHH
Confidence            7999999999999888998888888899999999986643

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.73  E-value=0.00021  Score=77.85  Aligned_cols=36  Identities=36%  Similarity=0.565  Sum_probs=31.1

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +||||||||| +|+++|..|++.|++|+|||+....+
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG   39 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG   39 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccc
Confidence            6999999965 68889999999999999999965544

>PRK07846 mycothione reductase; Reviewed

Probab=97.73  E-value=0.00021  Score=77.89  Aligned_cols=37  Identities=35%  Similarity=0.506  Sum_probs=28.1

Q ss_pred             cccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 009027          110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE  147 (546)
Q Consensus       110 ~yDVIIVGGg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~  147 (546)
                      +|||||||||+|+..|+ +++.|.||+|||+....+.+
T Consensus         1 ~yD~vVIG~G~~g~~aa-~~~~G~~V~lie~~~~GGtC   37 (451)
T PRK07846          1 HYDLIIIGTGSGNSILD-ERFADKRIAIVEKGTFGGTC   37 (451)
T ss_pred             CCCEEEECCCHHHHHHH-HHHCCCeEEEEeCCCCCCcc
Confidence            48999999876555443 34569999999998776654

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.73  E-value=0.00039  Score=74.00  Aligned_cols=47  Identities=13%  Similarity=0.128  Sum_probs=39.4

Q ss_pred             HHHHHHH-hcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEe
Q 009027          210 IVKKRFI-SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (546)
Q Consensus       210 ~L~~~a~-~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~A  256 (546)
                      .|.+++. +.|..|..+++|.+|.+++++|+|++.+..++.|+++|.+
T Consensus       210 ~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~t  257 (450)
T COG1231         210 QLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVT  257 (450)
T ss_pred             HHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEe
Confidence            4555554 4577999999999999999999999977568999999977

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.71  E-value=0.00048  Score=63.95  Aligned_cols=42  Identities=17%  Similarity=0.242  Sum_probs=35.5

Q ss_pred             cCCEE-EeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          218 LGGVI-FEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       218 ~G~~v-~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                      .|++| +...+|+++...+++..|.+++|..+.++.||-|.|+
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            35533 3466899999999999999999999999999999997

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.69  E-value=0.0004  Score=82.76  Aligned_cols=109  Identities=16%  Similarity=0.210  Sum_probs=68.3

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .++||+|||| ++|+++|..+++.|++|+|+|+.+.++..    +..                         ...  .+.
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~----~~~-------------------------~~~--~~~  210 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS----LLS-------------------------EAE--TID  210 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCe----eec-------------------------ccc--ccC
Confidence            3689999995 57999999999999999999988754311    000                         000  000


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEE-E--------cC---C--cEEEcCE
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLL-L--------AE---G--KILSSHL  252 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~-~--------~~---g--~~i~Arl  252 (546)
                                   ..+...+.+.+.+++.+.+ ++++.+++|.++..+..-..+. .        .+   +  .+++++-
T Consensus       211 -------------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~  277 (985)
T TIGR01372       211 -------------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKR  277 (985)
T ss_pred             -------------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCE
Confidence                         0122344445666666664 8999999998764321111111 0        01   1  1689999


Q ss_pred             EEEecCCCh
Q 009027          253 IIDAMGNFS  261 (546)
Q Consensus       253 VV~ADG~~S  261 (546)
                      ||-|+|..-
T Consensus       278 VILATGa~~  286 (985)
T TIGR01372       278 VVLATGAHE  286 (985)
T ss_pred             EEEcCCCCC
Confidence            999999863

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02053 MerA mercuric reductase

Probab=97.68  E-value=0.00017  Score=78.78  Aligned_cols=36  Identities=31%  Similarity=0.465  Sum_probs=31.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR  146 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~  146 (546)
                      ||||||||| .|.++|..++++|++|+|+||.++.+.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~   37 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGT   37 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCC
Confidence            799999965 688889999999999999999876664

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.67  E-value=0.0005  Score=73.56  Aligned_cols=102  Identities=16%  Similarity=0.294  Sum_probs=75.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| +|+-+|..|++.|.+|.|+|+.+.+-               ..               .            
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l---------------~~---------------~------------  183 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVM---------------GR---------------N------------  183 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch---------------hh---------------h------------
Confidence            59999976 69999999999999999999765210               00               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH--HHHHhc
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR  268 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~--vr~ql~  268 (546)
                                 . ...+.+.+.+.+.+.|++++.+++++++.. ++.+.|++++|+++.|++||.|.|....  +.+.++
T Consensus       184 -----------~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~g  250 (396)
T PRK09754        184 -----------A-PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQLAREAN  250 (396)
T ss_pred             -----------c-CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcC
Confidence                       0 012334556666778999999999999865 5567788888889999999999998654  334443

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=8e-05  Score=76.13  Aligned_cols=110  Identities=23%  Similarity=0.303  Sum_probs=78.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .|||+|||| |+|.++|...||+|+|.-|+-. .|.+.            .|+.++      ||..|..           
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae-rfGGQ------------vldT~~------IENfIsv-----------  260 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE-RFGGQ------------VLDTMG------IENFISV-----------  260 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhh-hhCCe------------eccccc------hhheecc-----------
Confidence            599999996 5799999999999999977642 23331            133333      2222211           


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe---CCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                            +.     .+-.+|-..|.++.++..++++...+.+++...   ++-..|++.+|..+++|-||-+.|++
T Consensus       261 ------~~-----teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         261 ------PE-----TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             ------cc-----ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence                  11     122467788888888888888877777777653   45678999999999999999999976

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.62  E-value=3.2e-05  Score=73.82  Aligned_cols=113  Identities=21%  Similarity=0.256  Sum_probs=66.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      |||||||| +|+++|..|++.|++|+|+|+.+....... .++..   .+              ...           ..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~-~~~~~---~~--------------~~~-----------~~   51 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSG-CIPSP---LL--------------VEI-----------AP   51 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHS-HHHHH---HH--------------HHH-----------HH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccc-ccccc---cc--------------ccc-----------cc
Confidence            79999965 689999999999999999987653111000 00000   00              000           00


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-----EEE---EcCCcEEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-----VLL---LAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-----~V~---~~~g~~i~ArlVV~ADG~~S  261 (546)
                      ....   .   . ...+. -+.+++...+++++.++++.+++.....+     .+.   ..++.++.++.||.|+|..+
T Consensus        52 ~~~~---~---~-~~~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~  122 (201)
T PF07992_consen   52 HRHE---F---L-PARLF-KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP  122 (201)
T ss_dssp             HHHH---H---H-HHHHG-HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred             cccc---c---c-ccccc-ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence            0000   0   0 00000 34445556788998889999998777742     232   22355899999999999654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.58  E-value=0.00013  Score=78.95  Aligned_cols=139  Identities=19%  Similarity=0.216  Sum_probs=78.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC-CCCccc----ccCCHHH-HHHHHHcCCCCcccchhhhhhccCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQE----WNISRKE-LLELVESGILVEDDIDEATATKFNPN  182 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~-~~~~r~----~~Is~~~-l~~L~~lGl~~~~~ie~~i~~~~~~~  182 (546)
                      +||||||||| +|+-+|++.||.|.+|+|+=-+.. .+...|    .++..+- +...+.||=.    +-..+    ...
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~----Mg~~~----D~~   75 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGL----MGKAA----DKA   75 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccch----HHHhh----hhc
Confidence            5999999988 799999999999999999964432 111000    0111110 0111222200    00000    011


Q ss_pred             cccccC----Ccc-ccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEeCCe--EEEEEcCCcEEEcCEEE
Q 009027          183 RCGFEG----KGE-IWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENA--AVLLLAEGKILSSHLII  254 (546)
Q Consensus       183 ~v~f~~----~~~-l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~~dg--v~V~~~~g~~i~ArlVV  254 (546)
                      .+.|.-    +.+ ++.   +-..+|+....+.+.+.+....+ .++. ..|+++..+++.  +-|.+.+|..+.|+-||
T Consensus        76 ~IQ~r~LN~sKGPAVra---~RaQaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~~~~v~GV~t~~G~~~~a~aVV  151 (621)
T COG0445          76 GIQFRMLNSSKGPAVRA---PRAQADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEEGQRVVGVVTADGPEFHAKAVV  151 (621)
T ss_pred             CCchhhccCCCcchhcc---hhhhhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcCCCeEEEEEeCCCCeeecCEEE
Confidence            122210    111 121   11346666667777777766555 6554 457777775553  44667789999999999


Q ss_pred             EecCCC
Q 009027          255 DAMGNF  260 (546)
Q Consensus       255 ~ADG~~  260 (546)
                      -+.|.+
T Consensus       152 lTTGTF  157 (621)
T COG0445         152 LTTGTF  157 (621)
T ss_pred             Eeeccc
Confidence            999976

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.56  E-value=0.00058  Score=75.11  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=27.9

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERN  141 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~  141 (546)
                      .+||||||||| .|..+|..+|++ |.+|+|||+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            37999999976 566777899996 9999999974

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.55  E-value=0.0011  Score=72.32  Aligned_cols=98  Identities=14%  Similarity=0.213  Sum_probs=76.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+...                     .                     . 
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~-  213 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL---------------------S---------------------F-  213 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------C---------------------c-
Confidence            59999976 69999999999999999999764210                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                                 +| ..+.+.+.+.+++.|++++.+++++++..+++++.+++++|+++.++.||.|.|......
T Consensus       214 -----------~d-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        214 -----------LD-DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD  275 (461)
T ss_pred             -----------CC-HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence                       00 123345566667789999999999999877778888887788999999999999887653

>TIGR02730 carot_isom carotene isomerase

Probab=97.55  E-value=7.2e-05  Score=82.37  Aligned_cols=63  Identities=19%  Similarity=0.212  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChHHHHHh
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQI  267 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~vr~ql  267 (546)
                      ..+.+.|.+.+++.|++|+.+++|+++..+++. +.|.+.+|+++.|+.||.|.|....+.+.+
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll  292 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL  292 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence            356678888999999999999999999877654 346677788899999999999887776554

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.54  E-value=0.00074  Score=74.16  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC-CCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKG  145 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~-~~~~  145 (546)
                      .+||||||||| +|..+|..|+++|.+|+|+||. ...+
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG   53 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG   53 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence            36999999965 6888999999999999999997 4444

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.50  E-value=0.001  Score=73.13  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=28.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      +||||||||| .|..+|..+++.|.+|+|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5999999965 6888888999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.49  E-value=0.001  Score=73.40  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=28.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      +||||||||| +|..+|..++++|.+|+|||+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            6999999965 6888999999999999999973

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.49  E-value=0.00014  Score=57.87  Aligned_cols=31  Identities=32%  Similarity=0.461  Sum_probs=27.0

Q ss_pred             EEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          115 VCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       115 IVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ||||| .|+++|..|+++|++|+|+|++..++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            78865 69999999999999999999998765

...

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.48  E-value=0.00072  Score=73.43  Aligned_cols=39  Identities=36%  Similarity=0.530  Sum_probs=32.9

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC-CCCCCc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLKGRE  147 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~-~~~~~~  147 (546)
                      .+||||||||| .|-.+|..+|+.|.+|+++|+. ...+.+
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtC   43 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTC   43 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceE
Confidence            37999999965 6778888999999999999999 566654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.48  E-value=0.0007  Score=76.92  Aligned_cols=38  Identities=26%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC--CCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN--TLKGR  146 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~--~~~~~  146 (546)
                      .+||||||||| .|..+|..+|++|.||+|||+.  ...+.
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGt  155 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGT  155 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccc
Confidence            47999999976 5777778999999999999975  44553

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.45  E-value=0.00035  Score=82.45  Aligned_cols=98  Identities=23%  Similarity=0.336  Sum_probs=63.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ..+|+||| ||+|+++|..|+++|++|+|+|+...++                  |++.           |.        
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G------------------G~l~-----------yG--------  348 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG------------------GVLR-----------YG--------  348 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC------------------ceEE-----------cc--------
Confidence            46899999 5689999999999999999999886433                  1110           00        


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                           .|+   +..+. .+.+...+.+++.|++++.++.+-        ..+++++......|-||-|.|+..
T Consensus       349 -----IP~---~rlp~-~vi~~~i~~l~~~Gv~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~~  404 (944)
T PRK12779        349 -----IPE---FRLPN-QLIDDVVEKIKLLGGRFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAGL  404 (944)
T ss_pred             -----CCC---CcChH-HHHHHHHHHHHhhcCeEEEeEEec--------cEEeHHHhccccCCEEEEeCCCCC
Confidence                 000   00111 223333566667899998887542        234454444456788999999863

>PLN02568 polyamine oxidase

Probab=97.42  E-value=0.0027  Score=70.70  Aligned_cols=50  Identities=22%  Similarity=0.300  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                      |.+.|.+.+.  +..|+.+++|+.|...+++++|++.+|++++|+.||.+-=
T Consensus       244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP  293 (539)
T PLN02568        244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS  293 (539)
T ss_pred             HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence            4444444432  3479999999999999999999998888999999998754

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.41  E-value=0.0016  Score=71.12  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=30.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR  146 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~  146 (546)
                      +||||||| +|.++|..+++.|.+|+||||....+.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~   37 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGT   37 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccccc
Confidence            69999965 688888899999999999999877664

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.41  E-value=0.0009  Score=71.84  Aligned_cols=147  Identities=16%  Similarity=0.275  Sum_probs=84.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-------CCH------HHHHHHHH-cCCCCcccchhhhh
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-------ISR------KELLELVE-SGILVEDDIDEATA  176 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-------Is~------~~l~~L~~-lGl~~~~~ie~~i~  176 (546)
                      ||+|||+| +|+++|+.|++. ++|+||=|.+.....--|+       ++.      .....|.. -|+-++..++.+..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            99999965 699999999998 9999999998764221221       111      11111211 13333221111110


Q ss_pred             hcc------CCCcccccCCc---------------c-ccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEE
Q 009027          177 TKF------NPNRCGFEGKG---------------E-IWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICT  233 (546)
Q Consensus       177 ~~~------~~~~v~f~~~~---------------~-l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~  233 (546)
                      ...      -...+.|+...               + ++..+     ---..+...|.+++++ .++++++++.+.++..
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-----~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~  162 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-----ATGKEIMTALLKKVRNRPNITVLEGAEALDLII  162 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-----CccHHHHHHHHHHHhcCCCcEEEecchhhhhhh
Confidence            000      00112222211               0 11111     1123567888888877 4779999999999988


Q ss_pred             eCC----eEEEEEcCC--cEEEcCEEEEecCCChHHH
Q 009027          234 YEN----AAVLLLAEG--KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       234 ~~d----gv~V~~~~g--~~i~ArlVV~ADG~~S~vr  264 (546)
                      +++    |+.+...++  .+++|+.||-|+|.-+.+=
T Consensus       163 ~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly  199 (518)
T COG0029         163 EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY  199 (518)
T ss_pred             cCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence            888    333333323  4899999999999877554

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.34  E-value=0.0026  Score=69.35  Aligned_cols=97  Identities=20%  Similarity=0.287  Sum_probs=73.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+..-                     .                     . 
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~-  210 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL---------------------P---------------------G-  210 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC---------------------C---------------------c-
Confidence            58999975 69989999999999999999864210                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g---~~i~ArlVV~ADG~~S~v  263 (546)
                                 .+ ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+.++   +++.++.||-|.|.....
T Consensus       211 -----------~~-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        211 -----------ED-KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             -----------CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence                       00 12234455666778999999999999988777887777655   679999999999988654

>PRK12831 putative oxidoreductase; Provisional

Probab=97.31  E-value=0.00054  Score=74.98  Aligned_cols=36  Identities=31%  Similarity=0.295  Sum_probs=31.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ..||+|||| ++|+++|..|+++|++|+|+|+...++
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G  176 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG  176 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            579999995 579999999999999999999876543

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.00086  Score=71.31  Aligned_cols=137  Identities=21%  Similarity=0.294  Sum_probs=74.3

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC-CCCccc----ccCCHH----HHHHHHHcCCCCcccchhhhhhc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQE----WNISRK----ELLELVESGILVEDDIDEATATK  178 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~-~~~~r~----~~Is~~----~l~~L~~lGl~~~~~ie~~i~~~  178 (546)
                      ..||||||||| +|+-+|++.||.|.+++|+-.+-. .+...+    .+|-.+    |+..|.  |+         +..-
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALd--Gl---------~~rv   95 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALD--GL---------CSRV   95 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhc--ch---------Hhhh
Confidence            37999999988 799999999999999999975532 121100    112221    222221  11         1111


Q ss_pred             cCCCcccccC-----CccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEEEEe-CC--e---EEEEEcCCc
Q 009027          179 FNPNRCGFEG-----KGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTY-EN--A---AVLLLAEGK  246 (546)
Q Consensus       179 ~~~~~v~f~~-----~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i~~~-~d--g---v~V~~~~g~  246 (546)
                      .....++|+-     +..+|.+   -..+|+......+.+.+..... +|+++ .|.++... ++  +   .-|.+.+|.
T Consensus        96 cD~s~vq~k~LNrs~GPAVwg~---RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt  171 (679)
T KOG2311|consen   96 CDQSGVQYKVLNRSKGPAVWGL---RAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGT  171 (679)
T ss_pred             hhhhhhhHHHhhccCCCcccCh---HHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCc
Confidence            1111122211     1112322   1246666666555555544433 66555 45555433 22  1   224556888


Q ss_pred             EEEcCEEEEecCCC
Q 009027          247 ILSSHLIIDAMGNF  260 (546)
Q Consensus       247 ~i~ArlVV~ADG~~  260 (546)
                      .+.|+-||--+|.+
T Consensus       172 ~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  172 VVYAESVILTTGTF  185 (679)
T ss_pred             EeccceEEEeeccc
Confidence            99999999999976

>PRK06116 glutathione reductase; Validated

Probab=97.29  E-value=0.0027  Score=69.08  Aligned_cols=98  Identities=16%  Similarity=0.152  Sum_probs=74.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+.+-                     .          .            
T Consensus       169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~----------~------------  205 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL---------------------R----------G------------  205 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc---------------------c----------c------------
Confidence            59999965 69999999999999999999764210                     0          0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                                 .+ ..+.+.+.+.+.+.|++++.++++.++..++++ +.|.+.+|+++.++.||.|.|....+.
T Consensus       206 -----------~~-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~  268 (450)
T PRK06116        206 -----------FD-PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD  268 (450)
T ss_pred             -----------cC-HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence                       00 012345556667789999999999999876665 778877888999999999999876543

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.28  E-value=0.00021  Score=72.94  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=27.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G-~rVlLlEr~~~  143 (546)
                      ||+||||+| .|+.+|..||+.| .+|+|||+...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            899999965 5888899999997 79999999865

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.25  E-value=0.00027  Score=77.68  Aligned_cols=55  Identities=15%  Similarity=0.206  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcCC-----cEEEcCEEEEecCCC
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEG-----KILSSHLIIDAMGNF  260 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~g-----~~i~ArlVV~ADG~~  260 (546)
                      .|-+.|.+.++++|++|+.+++|++|..+++.+ -|.+.++     +++.||.||-+.-..
T Consensus       233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            466778888888899999999999999887743 2333333     579999999887653

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.20  E-value=0.0044  Score=67.83  Aligned_cols=98  Identities=19%  Similarity=0.279  Sum_probs=75.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+..-.                                          . 
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~-  215 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP------------------------------------------G-  215 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC------------------------------------------C-
Confidence            58999965 699999999999999999997642100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                                 .+ ..+.+.+.+.+.+.|++++.+++++++..+++++.|.+.+|+++.++.||-|.|......
T Consensus       216 -----------~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~  277 (466)
T PRK07845        216 -----------ED-ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA  277 (466)
T ss_pred             -----------CC-HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence                       00 012344566667789999999999999877778888887888999999999999887653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.19  E-value=0.0026  Score=68.92  Aligned_cols=108  Identities=19%  Similarity=0.272  Sum_probs=67.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G--~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .||||||| +|+++|..|++.|  .+|+|||+.+......+              ++.           .+       ..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~--------------~~~-----------~~-------~~   49 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGAC--------------GLP-----------YF-------VG   49 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecC--------------CCc-----------eE-------ec
Confidence            58999965 6888999999874  58999998864321100              000           00       00


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc-CCcEEE--cCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILS--SHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-~g~~i~--ArlVV~ADG~~S  261 (546)
                      .  ..        -+...+.....+.+.+.|++++.+++|++++.++..+.+... +++++.  +|.||-|+|...
T Consensus        50 ~--~~--------~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~  115 (444)
T PRK09564         50 G--FF--------DDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP  115 (444)
T ss_pred             c--cc--------CCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence            0  00        001111111223345578999999999999877777766542 355666  999999999864

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.18  E-value=0.002  Score=67.92  Aligned_cols=46  Identities=17%  Similarity=0.137  Sum_probs=35.3

Q ss_pred             HHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          213 KRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       213 ~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      +.+.+.|++++.+ +|++++.++.  +|.+++|++++.|.||-|.|...
T Consensus        62 ~~~~~~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~  107 (364)
T TIGR03169        62 RLARQAGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT  107 (364)
T ss_pred             HHHHhcCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence            3444568998775 7888876655  56667788899999999999765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.17  E-value=0.0047  Score=67.15  Aligned_cols=97  Identities=16%  Similarity=0.254  Sum_probs=73.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+.+-                     .                     . 
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------------------~---------------------~-  204 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL---------------------R---------------------G-  204 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC---------------------c---------------------c-
Confidence            48999965 68889999999999999999754210                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                                 ++ ..+.+.+.+.+.+.|++++.+++++++..+++++.|++.+++++.++.||-|.|.....
T Consensus       205 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       205 -----------FD-DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             -----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence                       00 12233455666778999999999999987777788887778899999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=97.16  E-value=0.006  Score=67.45  Aligned_cols=98  Identities=16%  Similarity=0.247  Sum_probs=74.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+++.+.+-.                 +                          
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-----------------~--------------------------  241 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-----------------G--------------------------  241 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-----------------c--------------------------
Confidence            58999965 688899999999999999997642100                 0                          


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                                 ++ ..+.+.+.+.+.+.|++++.+++++++..+++++.|.+.+|+++.++.||-|.|......
T Consensus       242 -----------~d-~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  303 (499)
T PLN02507        242 -----------FD-DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK  303 (499)
T ss_pred             -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence                       01 123344555667789999999999999877778888887788899999999999887653

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.11  E-value=0.032  Score=57.57  Aligned_cols=63  Identities=21%  Similarity=0.280  Sum_probs=54.7

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChHH
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                      ..|++..+...|.+.+.+.|++++.+++|+++..+++++. |.+.+| +++|+.||.|.|..|.-
T Consensus       132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~  195 (337)
T TIGR02352       132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE  195 (337)
T ss_pred             ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence            3589999999999999999999999999999998777664 565555 79999999999998864

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.10  E-value=0.0058  Score=66.62  Aligned_cols=98  Identities=16%  Similarity=0.171  Sum_probs=73.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+.+-.                                            
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~--------------------------------------------  203 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR--------------------------------------------  203 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc--------------------------------------------
Confidence            59999976 699999999999999999997742110                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCC-cEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG-KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g-~~i~ArlVV~ADG~~S~vr  264 (546)
                      .          +| ..+.+.+.+.+.+.|++++.++.++++..++++ +.|+++++ +++.++.||-|.|......
T Consensus       204 ~----------~d-~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~  268 (450)
T TIGR01421       204 S----------FD-SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK  268 (450)
T ss_pred             c----------cC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence            0          01 123345566677789999999999999876554 66777777 5799999999999887653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.09  E-value=0.0063  Score=66.55  Aligned_cols=98  Identities=23%  Similarity=0.325  Sum_probs=72.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+..-                     +                     . 
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------------------~---------------------~-  210 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL---------------------P---------------------N-  210 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------C---------------------c-
Confidence            68999976 69999999999999999999654100                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--~g--~~i~ArlVV~ADG~~S~vr  264 (546)
                                 .| ..+.+.+.+.+.+.|++++.+++++++..+++.+.+.+.  +|  +++.++.||-|.|....+.
T Consensus       211 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~  276 (466)
T PRK07818        211 -----------ED-AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE  276 (466)
T ss_pred             -----------cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence                       00 122344556677789999999999999876666666554  55  3799999999999876653

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.07  E-value=0.00045  Score=76.13  Aligned_cols=63  Identities=19%  Similarity=0.209  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChHHHHHh
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQI  267 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~vr~ql  267 (546)
                      ..+-+.|.+.+++.|++|+.+++|+++..+++. +.|.+++|++++|+.||.|.+....+.+.+
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~  282 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL  282 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence            346677888888899999999999999887765 467777888899999999888766555433

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.06  E-value=0.0079  Score=65.18  Aligned_cols=96  Identities=11%  Similarity=0.154  Sum_probs=71.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+..-                     .                     ..
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~~  196 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL---------------------P---------------------RE  196 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC---------------------C---------------------CC
Confidence            59999975 69999999999999999999874210                     0                     00


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                                  + ..+.+.+.+.+++.|++++.+++++++..+++.+.+.. +++++.++.||-|.|.....
T Consensus       197 ------------~-~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~  255 (438)
T PRK07251        197 ------------E-PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNT  255 (438)
T ss_pred             ------------C-HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence                        0 11223445566778999999999999987666666654 56789999999999987654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.06  E-value=0.0011  Score=76.80  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      ..||+|||| ++|+++|..|+++|++|+|+|+...+
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~  466 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI  466 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            579999995 57999999999999999999986543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.05  E-value=0.0051  Score=71.67  Aligned_cols=104  Identities=17%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| +|+-+|..|++.|.+|.|+|+.+..               +      .         .             
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l---------------l------~---------~-------------  178 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL---------------M------A---------K-------------  178 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch---------------h------h---------h-------------
Confidence            58999976 6999999999999999999976420               0      0         0             


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHHhc
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR  268 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql~  268 (546)
                      .          ++ ..+.+.+.+.+++.|++++.++.++++..++....|.+++|+++.+++||-|.|...  .+.+.++
T Consensus       179 ~----------ld-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~g  247 (785)
T TIGR02374       179 Q----------LD-QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAG  247 (785)
T ss_pred             h----------cC-HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcC
Confidence            0          00 112344556667789999999999988765545567788899999999999999764  3555554


Q ss_pred             C
Q 009027          269 S  269 (546)
Q Consensus       269 ~  269 (546)
                      +
T Consensus       248 l  248 (785)
T TIGR02374       248 I  248 (785)
T ss_pred             C
Confidence            3

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.04  E-value=0.0039  Score=67.39  Aligned_cols=107  Identities=13%  Similarity=0.079  Sum_probs=66.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ..+||||||| +|+.+|..|.+.+++|+|||+.+..-..      +    .|-.                +-.+.     
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~------~----~l~~----------------~~~g~-----   58 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFT------P----LLPQ----------------TTTGT-----   58 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchh------h----hHHH----------------hcccC-----
Confidence            5789999987 5777888888778999999987632110      0    0100                00000     


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE--------cCCcEEEcCEEEEecCCC
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--------AEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--------~~g~~i~ArlVV~ADG~~  260 (546)
                                   ++...+..-+.+.+...+++++. .+|++|+.++..+++..        .++.++.+|.||-|.|..
T Consensus        59 -------------~~~~~~~~~~~~~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~  124 (424)
T PTZ00318         59 -------------LEFRSICEPVRPALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR  124 (424)
T ss_pred             -------------CChHHhHHHHHHHhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc
Confidence                         00111111233344445666654 58999988777777632        345689999999999987


Q ss_pred             h
Q 009027          261 S  261 (546)
Q Consensus       261 S  261 (546)
                      .
T Consensus       125 ~  125 (424)
T PTZ00318        125 P  125 (424)
T ss_pred             c
Confidence            4

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.04  E-value=0.0079  Score=65.66  Aligned_cols=97  Identities=20%  Similarity=0.340  Sum_probs=71.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| +|+-+|..|++.|.+|.|+|+.+.+-                     .                     . 
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll---------------------~---------------------~-  208 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------------------P---------------------G-  208 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------------------c---------------------c-
Confidence            69999975 69999999999999999999764210                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-~~i~ArlVV~ADG~~S~v  263 (546)
                                 .+ ..+.+.+.+.+.+.|++++.+++++++..++..+.+...++ .++.+++||-|.|....+
T Consensus       209 -----------~d-~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~  270 (458)
T PRK06912        209 -----------ED-EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV  270 (458)
T ss_pred             -----------cc-HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence                       00 12334455666778999999999999977666665554322 379999999999988765

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.00  E-value=0.0095  Score=65.24  Aligned_cols=97  Identities=16%  Similarity=0.206  Sum_probs=71.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+..-                     .                     . 
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il---------------------~---------------------~-  212 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC---------------------P---------------------G-  212 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC---------------------C---------------------C-
Confidence            58999965 69999999999999999999754210                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc---C--CcEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---~--g~~i~ArlVV~ADG~~S~v  263 (546)
                                 ++ ..+.+.+.+.+.+.|++++.+++++++..+++++.+.+.   +  ++++.++.||-|.|....+
T Consensus       213 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~  278 (466)
T PRK06115        213 -----------TD-TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT  278 (466)
T ss_pred             -----------CC-HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence                       01 112344566677789999999999999877677766553   2  3479999999999988654

>PRK06370 mercuric reductase; Validated

Probab=96.99  E-value=0.0098  Score=64.98  Aligned_cols=97  Identities=14%  Similarity=0.166  Sum_probs=71.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+...                     .                     . 
T Consensus       173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------------------~---------------------~-  209 (463)
T PRK06370        173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL---------------------P---------------------R-  209 (463)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC---------------------c---------------------c-
Confidence            68999976 69999999999999999999765210                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc--C-CcEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--E-GKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--~-g~~i~ArlVV~ADG~~S~v  263 (546)
                                 .+ ..+.+.+.+.+.+.|++++.++++.++..+++++.|.+.  + +.++.++.||-|.|.....
T Consensus       210 -----------~~-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        210 -----------ED-EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT  273 (463)
T ss_pred             -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence                       00 112344556667789999999999999877766655542  3 4579999999999987654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.99  E-value=0.0036  Score=66.95  Aligned_cols=106  Identities=14%  Similarity=0.184  Sum_probs=67.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~--rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .+||||||| +|+.+|..|+++|.  +|+|+|+.+.....+. .++...   +               ...     .   
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-~l~~~~---~---------------~~~-----~---   56 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-PLSKSM---L---------------LED-----S---   56 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-CCCHHH---H---------------CCC-----C---
Confidence            479999975 68889999999887  7999998764432221 122110   0               000     0   


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                       ....       ...+.        +...+.|++++.++.|+.++.+..  .|.+++|+++.++.||-|+|...
T Consensus        57 -~~~~-------~~~~~--------~~~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         57 -PQLQ-------QVLPA--------NWWQENNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             -cccc-------ccCCH--------HHHHHCCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence             0000       00111        112346899999999988876543  45566788999999999999875

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.98  E-value=0.0039  Score=73.42  Aligned_cols=36  Identities=31%  Similarity=0.346  Sum_probs=31.0

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ..+|+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G  575 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG  575 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence            468999995 579999999999999999999886543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.95  E-value=0.01  Score=65.05  Aligned_cols=98  Identities=18%  Similarity=0.223  Sum_probs=73.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+..-                     .                     . 
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~-  221 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL---------------------A---------------------A-  221 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC---------------------C---------------------c-
Confidence            68999975 69999999999999999999764210                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC--C--cEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~--g--~~i~ArlVV~ADG~~S~vr  264 (546)
                                 .+ ..+.+.+.+++.+.|++++.+++++++..+++++.+.+.+  |  .++.++.||-|.|......
T Consensus       222 -----------~d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~  287 (475)
T PRK06327        222 -----------AD-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD  287 (475)
T ss_pred             -----------CC-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence                       01 1233444556667899999999999998877777777654  3  4799999999999887643

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.95  E-value=0.0067  Score=64.43  Aligned_cols=69  Identities=16%  Similarity=0.137  Sum_probs=56.1

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEcCEEEEecCCCh-----------HHHHHhc
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFS-----------PVVKQIR  268 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-~~i~ArlVV~ADG~~S-----------~vr~ql~  268 (546)
                      .-......++|..++.+.|++++.+++|+++  +++++.|.+.++ ..++|+-||-|.|..|           .+++++|
T Consensus        82 S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lG  159 (376)
T TIGR03862        82 EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRG  159 (376)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCC
Confidence            3456778899999999999999999999998  444577776543 4799999999999876           6888887


Q ss_pred             CCC
Q 009027          269 SGR  271 (546)
Q Consensus       269 ~~~  271 (546)
                      ...
T Consensus       160 h~i  162 (376)
T TIGR03862       160 VSV  162 (376)
T ss_pred             Ccc
Confidence            653

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK07846 mycothione reductase; Reviewed

Probab=96.93  E-value=0.011  Score=64.37  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=71.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+|+.+..-                     ..                     
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll---------------------~~---------------------  204 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL---------------------RH---------------------  204 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------------------cc---------------------
Confidence            369999975 69999999999999999999764210                     00                     


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                                  .++ .+.+.+.+ ..+.|++++.+++++++..+++++.|++.+|+++.++.||.|.|......
T Consensus       205 ------------~d~-~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~  265 (451)
T PRK07846        205 ------------LDD-DISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD  265 (451)
T ss_pred             ------------cCH-HHHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence                        000 11122222 22457899999999999877777888887788999999999999887643

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.92  E-value=0.01  Score=64.54  Aligned_cols=98  Identities=17%  Similarity=0.305  Sum_probs=75.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      -++||||| .|+=.|-.+++.|.+|+|||+....-                     +                     . 
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL---------------------p---------------------~-  211 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL---------------------P---------------------G-  211 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC---------------------C---------------------c-
Confidence            39999976 69999999999999999999885210                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~ArlVV~ADG~~S~vr  264 (546)
                                 .| ..+.+.+.+.+++.|++++.+++++.+...++++.+++++|.  +++|+.|+-|-|+.-.+-
T Consensus       212 -----------~D-~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~  275 (454)
T COG1249         212 -----------ED-PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD  275 (454)
T ss_pred             -----------CC-HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence                       00 123455566666667899999999999888887888887765  799999999999875444

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=96.92  E-value=0.00099  Score=70.77  Aligned_cols=36  Identities=36%  Similarity=0.541  Sum_probs=31.0

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ++||+||||| +|+++|..|++.|.+|+|+|+....+
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG   37 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG   37 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            3799999976 69999999999999999999876543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK02106 choline dehydrogenase; Validated

Probab=96.92  E-value=0.00098  Score=74.68  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             CcccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNT  142 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~-~G~rVlLlEr~~  142 (546)
                      ..||+|||||| +|+.+|..||+ .|++|+|||+.+
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            36999999965 69999999999 899999999985

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.92  E-value=0.01  Score=65.68  Aligned_cols=97  Identities=18%  Similarity=0.238  Sum_probs=73.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+++.....                                .            
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------------------------------~------------  219 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR--------------------------------G------------  219 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc--------------------------------c------------
Confidence            69999976 69999999999999999998532100                                0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                                 .| ..+.+.+.+.+++.|++++.++.+.++...++.+.|.+++|+++.++.||-|.|....+.
T Consensus       220 -----------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  281 (499)
T PTZ00052        220 -----------FD-RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK  281 (499)
T ss_pred             -----------CC-HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence                       00 012244555667789999999999988776666777777788899999999999887654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.91  E-value=0.0042  Score=64.66  Aligned_cols=131  Identities=24%  Similarity=0.240  Sum_probs=68.8

Q ss_pred             CcccEEEEcchHHH-HHHHHHHhCCCeEEEEcCCC-CCCCcc-cccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          109 GTFDVIVCGGTLGI-FIATALSFKGLRVAIVERNT-LKGREQ-EWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       109 ~~yDVIIVGGg~G~-~~Aa~LA~~G~rVlLlEr~~-~~~~~r-~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      .+|||+|||||+|+ .+|...|+.|++++.+|++. ..+.+- ..-|.-++  .|..-.+...  +..   ..+....+ 
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKA--LL~nSh~yh~--~q~---~~~~~rGi-  109 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKA--LLNNSHLYHE--AQH---EDFASRGI-  109 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHH--HhhhhHHHHH--Hhh---hHHHhcCc-
Confidence            37999999987755 56668889999999999854 444220 01122222  1222111100  000   00000000 


Q ss_pred             ccCCccccccccccceeCHHH-----------HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEcCE
Q 009027          186 FEGKGEIWVEDILNLGVSPAK-----------LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHL  252 (546)
Q Consensus       186 f~~~~~l~~~~~l~~~V~~~~-----------L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~Arl  252 (546)
                             ..   ....+|...           |..-+...+++.+++++.++-   -..++..|.+.-.||.  .+.|+-
T Consensus       110 -------~v---s~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g---sf~~p~~V~v~k~dg~~~ii~aKn  176 (506)
T KOG1335|consen  110 -------DV---SSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG---SFLDPNKVSVKKIDGEDQIIKAKN  176 (506)
T ss_pred             -------cc---cceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE---eecCCceEEEeccCCCceEEeeee
Confidence                   00   011122222           222333344555666665542   1245677777776664  899999


Q ss_pred             EEEecCCC
Q 009027          253 IIDAMGNF  260 (546)
Q Consensus       253 VV~ADG~~  260 (546)
                      +|.|+|..
T Consensus       177 IiiATGSe  184 (506)
T KOG1335|consen  177 IIIATGSE  184 (506)
T ss_pred             EEEEeCCc
Confidence            99999964

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.91  E-value=0.0098  Score=64.16  Aligned_cols=102  Identities=22%  Similarity=0.248  Sum_probs=72.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+..-                     .                      .
T Consensus       139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~---------------------~----------------------~  175 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL---------------------N----------------------K  175 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC---------------------c----------------------c
Confidence            69999976 69999999999999999999764210                     0                      0


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHHhc
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR  268 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql~  268 (546)
                      .          .+ ..+.+.+.+.+.+.|++++.++++.++..++ .+ +.+.+|+++.++.||-|.|...  .+.+.++
T Consensus       176 ~----------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g  242 (427)
T TIGR03385       176 L----------FD-EEMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIKPNSELAKDSG  242 (427)
T ss_pred             c----------cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCccCCHHHHHhcC
Confidence            0          00 1223445566677899999999999986543 33 4556788999999999999864  3444444


Q ss_pred             C
Q 009027          269 S  269 (546)
Q Consensus       269 ~  269 (546)
                      .
T Consensus       243 l  243 (427)
T TIGR03385       243 L  243 (427)
T ss_pred             c
Confidence            3

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR02053 MerA mercuric reductase

Probab=96.90  E-value=0.011  Score=64.59  Aligned_cols=99  Identities=15%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+|+.+.+-                     .                     .
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~  204 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL---------------------P---------------------R  204 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC---------------------C---------------------c
Confidence            369999965 69999999999999999999764210                     0                     0


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---CcEEEcCEEEEecCCChHHH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g~~i~ArlVV~ADG~~S~vr  264 (546)
                                  .+ ..+...+.+.+.+.|++++.+++++++..+++.+.+++.+   ++++.++.||.|.|......
T Consensus       205 ------------~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~  269 (463)
T TIGR02053       205 ------------EE-PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD  269 (463)
T ss_pred             ------------cC-HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence                        00 0122344556667899999999999998776666666532   35899999999999876543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.90  E-value=0.0089  Score=70.09  Aligned_cols=104  Identities=19%  Similarity=0.221  Sum_probs=75.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .++||||| +|+-+|..|++.|.+|.|+|+.+..               +      .                      .
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l---------------l------~----------------------~  183 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML---------------M------A----------------------E  183 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc---------------h------h----------------------h
Confidence            48999976 6999999999999999999976420               0      0                      0


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC--eEEEEEcCCcEEEcCEEEEecCCChH--HHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP--VVKQ  266 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d--gv~V~~~~g~~i~ArlVV~ADG~~S~--vr~q  266 (546)
                      .          +| ....+.+.+++.+.|++++.++.++++..+++  ...|.+++|+++.+++||-|.|....  +.+.
T Consensus       184 ~----------ld-~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~  252 (847)
T PRK14989        184 Q----------LD-QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQ  252 (847)
T ss_pred             h----------cC-HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhh
Confidence            0          00 11234556667788999999999999875432  34577788999999999999997754  4555


Q ss_pred             hcC
Q 009027          267 IRS  269 (546)
Q Consensus       267 l~~  269 (546)
                      .++
T Consensus       253 ~Gl  255 (847)
T PRK14989        253 CGL  255 (847)
T ss_pred             cCc
Confidence            544

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.89  E-value=0.019  Score=62.23  Aligned_cols=103  Identities=13%  Similarity=0.189  Sum_probs=71.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+..               |      .                      .
T Consensus       151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~---------------l------~----------------------~  187 (444)
T PRK09564        151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI---------------L------P----------------------D  187 (444)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc---------------C------c----------------------h
Confidence            69999976 6988999999999999999865410               0      0                      0


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHHhc
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR  268 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql~  268 (546)
                      .          ++ ..+.+.+.+.+++.|++++.+++++++..++....+.+ ++.++.+++||-|.|...  .+.+..+
T Consensus       188 ~----------~~-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~g  255 (444)
T PRK09564        188 S----------FD-KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPNTEFLEDTG  255 (444)
T ss_pred             h----------cC-HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhcC
Confidence            0          00 12345566777788999999999999865433334444 445799999999999864  3445444


Q ss_pred             C
Q 009027          269 S  269 (546)
Q Consensus       269 ~  269 (546)
                      +
T Consensus       256 l  256 (444)
T PRK09564        256 L  256 (444)
T ss_pred             c
Confidence            3

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.88  E-value=0.013  Score=64.23  Aligned_cols=97  Identities=21%  Similarity=0.294  Sum_probs=69.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+.+-                     +                     . 
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il---------------------~---------------------~-  218 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL---------------------P---------------------T-  218 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC---------------------C---------------------c-
Confidence            69999975 69999999999999999999875210                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-eCCeEEE-EEcCC--cEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVL-LLAEG--KILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dgv~V-~~~~g--~~i~ArlVV~ADG~~S~v  263 (546)
                                 .+ ..+.+.+.+.+++.|++++.+++++++.. .++++.+ .+.+|  +++.++.||.|.|....+
T Consensus       219 -----------~~-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~  283 (472)
T PRK05976        219 -----------ED-AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT  283 (472)
T ss_pred             -----------CC-HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence                       00 12334455566778999999999999875 2444443 34455  379999999999987654

>PLN02576 protoporphyrinogen oxidase

Probab=96.87  E-value=0.0012  Score=72.58  Aligned_cols=38  Identities=34%  Similarity=0.422  Sum_probs=32.6

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCC
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKG  145 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~~~~~  145 (546)
                      ..++||+||||| +|+++|..|+++ |++|+|+|+..-.+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            346899999977 599999999999 99999999886543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.86  E-value=0.0019  Score=76.90  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=31.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ..+|+|||| ++|+++|..|+++|++|+|+|+...++
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            479999995 679999999999999999999876543

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=96.85  E-value=0.027  Score=62.67  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CC--eEE--EEEc-CCc-----EEEcCEEEEecCCC
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-EN--AAV--LLLA-EGK-----ILSSHLIIDAMGNF  260 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~d--gv~--V~~~-~g~-----~i~ArlVV~ADG~~  260 (546)
                      +.+..-|.+.+++.|++++.+++|+++..+ ++  +.+  |.+. +|+     ...+|+||.|.|..
T Consensus       226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~  292 (576)
T PRK13977        226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI  292 (576)
T ss_pred             hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence            346677888999999999999999999875 22  222  3332 222     46799999999954

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.82  E-value=0.017  Score=62.67  Aligned_cols=96  Identities=19%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+|+||| .|+-+|..|++.|.+|.|+|+.+..-                     +                     . 
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~-  196 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLFL---------------------P---------------------R-  196 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC---------------------C---------------------C-
Confidence            58999965 69999999999999999999753100                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                                 .+ ..+.+.+.+.+.+.|++++.+++++++..+++.+.++.+++ ++.++.||-|.|.....
T Consensus       197 -----------~~-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        197 -----------ED-RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence                       00 12234456677788999999999999987777777776544 58999999999988754

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.82  E-value=0.0036  Score=68.33  Aligned_cols=35  Identities=31%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      ..+|+||||| +|+++|..|+++|++|+|+|+.+.+
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            4799999965 7999999999999999999988643

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.81  E-value=0.011  Score=62.42  Aligned_cols=103  Identities=21%  Similarity=0.315  Sum_probs=76.5

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -+|+|+|| .+|+.+|..|+++|++|+++|+...+...            +                             
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~------------~-----------------------------  175 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ------------L-----------------------------  175 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh------------h-----------------------------
Confidence            58999996 57999999999999999999987642210            0                             


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE---EEEcCCcEEEcCEEEEecCCCh--HHH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIIDAMGNFS--PVV  264 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V~~~~g~~i~ArlVV~ADG~~S--~vr  264 (546)
                         .     .     ..+-+.+.+.+.+.|++++.++++.+++...+...   +...++..+.+++++-+.|..-  .++
T Consensus       176 ---~-----~-----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~  242 (415)
T COG0446         176 ---L-----D-----PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLA  242 (415)
T ss_pred             ---h-----h-----HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHH
Confidence               0     0     23345566667778999999999999987766543   4555788999999999999776  344


Q ss_pred             HHh
Q 009027          265 KQI  267 (546)
Q Consensus       265 ~ql  267 (546)
                      +..
T Consensus       243 ~~~  245 (415)
T COG0446         243 NDA  245 (415)
T ss_pred             hhC
Confidence            443

>TIGR02462 pyranose_ox pyranose oxidase

Probab=96.78  E-value=0.0014  Score=72.81  Aligned_cols=35  Identities=31%  Similarity=0.485  Sum_probs=31.5

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      |||||||+ ++|+++|..||++|++|++||++...+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            79999995 679999999999999999999987654

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK14727 putative mercuric reductase; Provisional

Probab=96.78  E-value=0.015  Score=63.89  Aligned_cols=96  Identities=24%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+++.....                                           . 
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-------------------------------------------~-  225 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-------------------------------------------R-  225 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-------------------------------------------c-
Confidence            59999976 69999999999999999998642100                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                                 .+ ..+.+.+.+++.+.|++++.+++++++..+++.+.+...++ ++.++.||-|.|......
T Consensus       226 -----------~d-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~  286 (479)
T PRK14727        226 -----------ED-PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH  286 (479)
T ss_pred             -----------ch-HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence                       00 11234556666778999999999999987777777776554 699999999999987654

>PRK07208 hypothetical protein; Provisional

Probab=96.74  E-value=0.0015  Score=71.41  Aligned_cols=56  Identities=16%  Similarity=0.317  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE--EEEc--CCc--EEEcCEEEEecCCCh
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLA--EGK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~~~--~g~--~i~ArlVV~ADG~~S  261 (546)
                      .|-+.|.+.+.+.|++|+.+++|+++..++++++  +...  +|+  ++.|+.||-|.-...
T Consensus       219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~  280 (479)
T PRK07208        219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRE  280 (479)
T ss_pred             hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHH
Confidence            3556777788888999999999999998887643  2222  343  699999998766543

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.71  E-value=0.017  Score=63.64  Aligned_cols=58  Identities=16%  Similarity=0.221  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                      +.+.+.+.+++.|++++.++.++++..++++ ..|.+.+++++.++.||-|.|......
T Consensus       233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~  291 (486)
T TIGR01423       233 LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ  291 (486)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence            3455566677789999999999999866554 567776777899999999999886653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.70  E-value=0.036  Score=59.22  Aligned_cols=57  Identities=23%  Similarity=0.287  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChH
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      +..+-+.+.+.+.|++++++|+|.++...++. ..|.+++|.++.||.||-|-|+.+.
T Consensus       174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~  231 (486)
T COG2509         174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR  231 (486)
T ss_pred             HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence            45567888999999999999999999988875 3566778889999999999998764

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.68  E-value=0.002  Score=65.75  Aligned_cols=36  Identities=36%  Similarity=0.517  Sum_probs=32.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .||.+|||+| .|+.+|-.+++.|.+|+||||.+..+
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG   37 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence            4899999977 59999999999999999999998766

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.68  E-value=0.019  Score=63.32  Aligned_cols=96  Identities=16%  Similarity=0.154  Sum_probs=70.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+++....+                  +                          
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------------~--------------------------  217 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------------------G--------------------------  217 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc------------------c--------------------------
Confidence            58999976 69999999999999999998532100                  0                          


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g---~~i~ArlVV~ADG~~S~v  263 (546)
                                 .| ..+.+.+.+.+++.|++++.++.++++...++.+.|++.++   +++.++.||-|.|.....
T Consensus       218 -----------~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~  281 (484)
T TIGR01438       218 -----------FD-QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT  281 (484)
T ss_pred             -----------cC-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence                       00 11223455666778999999999998877666777776554   379999999999987554

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK13748 putative mercuric reductase; Provisional

Probab=96.64  E-value=0.021  Score=63.95  Aligned_cols=95  Identities=23%  Similarity=0.301  Sum_probs=70.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+++...                |      ..                 +    
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~----------------l------~~-----------------~----  308 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARLGSKVTILARSTL----------------F------FR-----------------E----  308 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc----------------c------cc-----------------c----
Confidence            59999975 699999999999999999986421                0      00                 0    


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                                  | ..+.+.+.+.+.+.|++++.+++++++..+++.+.+.+.++ ++.++.||-|.|.....
T Consensus       309 ------------d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        309 ------------D-PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             ------------C-HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence                        0 01223445566678999999999999987777777766544 69999999999987654

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.63  E-value=0.0058  Score=64.30  Aligned_cols=144  Identities=15%  Similarity=0.214  Sum_probs=88.8

Q ss_pred             CcccEEEEc-chHHHHHHHHHHhC-CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCC-Cccc
Q 009027          109 GTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCG  185 (546)
Q Consensus       109 ~~yDVIIVG-Gg~G~~~Aa~LA~~-G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~-~~v~  185 (546)
                      ..+|+|.|| ||.-+.+|+.|... +++++.+||.+..+.+.+.-+...+++.-..-.|.+          -.+| ...+
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVT----------l~~PTs~yS   73 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVT----------LVDPTSPYS   73 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhcc----------ccCCCCchH
Confidence            369999999 88899999999966 589999999997765544334333332211111111          1111 1112


Q ss_pred             ccC----Ccccccc-ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE-eCCe-EE--EEEcCCcEEEcCEEEEe
Q 009027          186 FEG----KGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENA-AV--LLLAEGKILSSHLIIDA  256 (546)
Q Consensus       186 f~~----~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dg-v~--V~~~~g~~i~ArlVV~A  256 (546)
                      |-+    ..+++.- +.-...+.|..+.+.|.-.|... -.++.+++|++|.. +.|. +.  +.+.+++.++||=||-.
T Consensus        74 FLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg  152 (436)
T COG3486          74 FLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLG  152 (436)
T ss_pred             HHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEc
Confidence            211    1122210 00124578999999988888766 58889999997742 2232 22  34456779999999999


Q ss_pred             cCCChHH
Q 009027          257 MGNFSPV  263 (546)
Q Consensus       257 DG~~S~v  263 (546)
                      -|..-.|
T Consensus       153 ~G~~P~I  159 (436)
T COG3486         153 VGTQPYI  159 (436)
T ss_pred             cCCCcCC
Confidence            9976433

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.62  E-value=0.0088  Score=69.77  Aligned_cols=44  Identities=25%  Similarity=0.341  Sum_probs=35.9

Q ss_pred             HhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       216 ~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      .+.|++++.+++|+.++.+.  ..|.+.+|+++.+|.||-|+|...
T Consensus        65 ~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        65 EKHGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             HHCCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCc
Confidence            45789999999999887654  356667788999999999999764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.61  E-value=0.015  Score=63.03  Aligned_cols=109  Identities=15%  Similarity=0.098  Sum_probs=66.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .||||||| +|+.+|..|++.  +.+|+|+|+.+.....++ .+.     .+. -+.                  +    
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~-~lp-----~~~-~~~------------------~----   53 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC-ALP-----YYI-GEV------------------V----   53 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccC-Ccc-----hhh-cCc------------------c----
Confidence            59999976 588888888876  789999999865332211 000     000 000                  0    


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC-Cc--EEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-g~--~i~ArlVV~ADG~~S  261 (546)
                      ...   ...  +.+.+..       ...+.|++++.+++|++++.++..+.+...+ ++  ++++|.||-|+|...
T Consensus        54 ~~~---~~~--~~~~~~~-------~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~  117 (438)
T PRK13512         54 EDR---KYA--LAYTPEK-------FYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA  117 (438)
T ss_pred             CCH---HHc--ccCCHHH-------HHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence            000   000  0011111       1134589999999999998877777666532 22  478999999999875

>PRK14694 putative mercuric reductase; Provisional

Probab=96.61  E-value=0.027  Score=61.64  Aligned_cols=96  Identities=17%  Similarity=0.217  Sum_probs=70.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+++.....                                           . 
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------------~-  215 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-------------------------------------------Q-  215 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-------------------------------------------C-
Confidence            58999965 69999999999999999998532100                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                                 .+ ..+.+.+.+.+.+.|++++.++++.++..+++.+.+.+.+ .++.++.||-|.|......
T Consensus       216 -----------~~-~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~  276 (468)
T PRK14694        216 -----------ED-PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNTE  276 (468)
T ss_pred             -----------CC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCcC
Confidence                       00 1123445666677899999999999998766666666644 4799999999999887653

>TIGR03452 mycothione_red mycothione reductase

Probab=96.61  E-value=0.028  Score=61.26  Aligned_cols=96  Identities=20%  Similarity=0.260  Sum_probs=69.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+.+-                  ..                         
T Consensus       171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll------------------~~-------------------------  207 (452)
T TIGR03452       171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL------------------RH-------------------------  207 (452)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc------------------cc-------------------------
Confidence            69999965 69999999999999999999764210                  00                         


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                                 .++ .+.+.+.+ ..+.|++++.+++++++..+++++.|++.+|+++.++.||.|.|.....
T Consensus       208 -----------~d~-~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       208 -----------LDE-DISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             -----------cCH-HHHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence                       000 01112222 2235789999999999987777788887778889999999999987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=96.55  E-value=0.0024  Score=69.43  Aligned_cols=41  Identities=12%  Similarity=0.215  Sum_probs=36.1

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       220 ~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      ++|+.+++|++|..++++++|++++|++++||.||-|.-..
T Consensus       238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~  278 (462)
T TIGR00562       238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK  278 (462)
T ss_pred             CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence            57999999999999999999988788889999999987754

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.54  E-value=0.025  Score=62.00  Aligned_cols=97  Identities=16%  Similarity=0.190  Sum_probs=70.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|||+.+..-                     ..                      
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il---------------------~~----------------------  212 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI---------------------PA----------------------  212 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC---------------------Cc----------------------
Confidence            69999975 69999999999999999999775210                     00                      


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC--C--cEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~--g--~~i~ArlVV~ADG~~S~vr  264 (546)
                                 .| ..+.+.+.+.+.+. ++++.+++++++...++++.+++.+  +  +++.++.||-|.|....+.
T Consensus       213 -----------~d-~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~  277 (471)
T PRK06467        213 -----------AD-KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK  277 (471)
T ss_pred             -----------CC-HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence                       00 11223344455555 7899999999998777777776643  2  3699999999999987653

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.54  E-value=0.023  Score=60.26  Aligned_cols=105  Identities=10%  Similarity=0.125  Sum_probs=64.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .|||||||| +|+.+|..|.+.  ..+|+||++.+.....+. .++.                   .+.           
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~-~l~~-------------------~~~-----------   51 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP-DLSH-------------------VFS-----------   51 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC-cCcH-------------------HHh-----------
Confidence            489999976 577888888764  568999998764322111 0100                   000           


Q ss_pred             CCccccccccccceeCHHHHHH-HHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~-~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      +            ..+...+.. ...+.+.+.|++++.+++|++++.+..  +|.+ ++.++.+|.||-|.|...
T Consensus        52 ~------------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~  111 (377)
T PRK04965         52 Q------------GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA  111 (377)
T ss_pred             C------------CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence            0            001111111 112334456899999999999876544  4444 566899999999999864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.52  E-value=0.0026  Score=68.63  Aligned_cols=55  Identities=22%  Similarity=0.277  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEE-EcCC--cEEEcCEEEEecCCC
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL-LAEG--KILSSHLIIDAMGNF  260 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~-~~~g--~~i~ArlVV~ADG~~  260 (546)
                      ++.+.|.+++++.|++++.+++|+++..+++++.+. ..++  .+++|+.||-|.|..
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            456778888888999999999999998877766543 3344  369999999999965

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.48  E-value=0.023  Score=61.67  Aligned_cols=99  Identities=14%  Similarity=0.221  Sum_probs=71.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+...                  ..                         
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~------------------~~-------------------------  186 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN------------------KL-------------------------  186 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc------------------hh-------------------------
Confidence            69999976 69999999999999999999764210                  00                         


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH--HHHHhc
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR  268 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~--vr~ql~  268 (546)
                                 .+ ..+.+.+.+.+.+.|++++.+++++++..  +  .|++++|+++.++.||-|.|....  ..+..+
T Consensus       187 -----------~d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~g  250 (438)
T PRK13512        187 -----------MD-ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSN  250 (438)
T ss_pred             -----------cC-HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHHHHhcC
Confidence                       00 12234455666778999999999998852  2  455667888999999999997653  444444


Q ss_pred             C
Q 009027          269 S  269 (546)
Q Consensus       269 ~  269 (546)
                      +
T Consensus       251 l  251 (438)
T PRK13512        251 I  251 (438)
T ss_pred             c
Confidence            3

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.45  E-value=0.0026  Score=70.99  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=31.1

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ..+||+||||+| .|+++|..|+..|++|+|||+..
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            347999999955 79999999999999999999884

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=96.39  E-value=0.0035  Score=64.12  Aligned_cols=33  Identities=42%  Similarity=0.623  Sum_probs=30.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      +|||+||||| +|+++|++|+++|.++.+|-+++
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            6999999988 59999999999999999998775

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.39  E-value=0.015  Score=61.08  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=30.9

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ..+|+|||| .+|+.+|..|++.|++|+++|+.+.++
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g   54 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG   54 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            358999996 479999999999999999999887543

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.37  E-value=0.0046  Score=66.37  Aligned_cols=63  Identities=29%  Similarity=0.348  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCC--cEEEcCEEEEecCCC-hH-HHHHh
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG--KILSSHLIIDAMGNF-SP-VVKQI  267 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g--~~i~ArlVV~ADG~~-S~-vr~ql  267 (546)
                      .+|.+.|.+++++.|++++.+++|+++..+++.++ |.++++  .+++|+-+|-|.|.+ |. +.+++
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence            35667788888888999999999999887777665 444454  379999999999998 75 55544

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.35  E-value=0.0041  Score=68.52  Aligned_cols=35  Identities=29%  Similarity=0.295  Sum_probs=30.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      ..+||||||| +|+++|..|...|++|+|+|.....
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv   50 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV   50 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence            6899999976 5999999999999999999966544

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.34  E-value=0.035  Score=60.01  Aligned_cols=51  Identities=20%  Similarity=0.317  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      +.+.+.+.+.+.|++++.+++++++.  ++.  |.+++|+++.++++|-|.|...
T Consensus       230 ~~~~~~~~L~~~gV~v~~~~~v~~v~--~~~--v~~~~g~~i~~d~vi~~~G~~~  280 (424)
T PTZ00318        230 LRKYGQRRLRRLGVDIRTKTAVKEVL--DKE--VVLKDGEVIPTGLVVWSTGVGP  280 (424)
T ss_pred             HHHHHHHHHHHCCCEEEeCCeEEEEe--CCE--EEECCCCEEEccEEEEccCCCC
Confidence            34555666778899999999998875  343  4567888999999999999643

>PLN02268 probable polyamine oxidase

Probab=96.26  E-value=0.0046  Score=66.80  Aligned_cols=40  Identities=20%  Similarity=0.135  Sum_probs=36.1

Q ss_pred             cCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEec
Q 009027          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (546)
Q Consensus       218 ~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~AD  257 (546)
                      .+++|+.+++|+++..++++++|++.+|+++.||.||.|.
T Consensus       209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~  248 (435)
T PLN02268        209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAV  248 (435)
T ss_pred             ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEec
Confidence            3668999999999999999999998888889999999996

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.25  E-value=0.024  Score=66.47  Aligned_cols=104  Identities=15%  Similarity=0.225  Sum_probs=66.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhC----CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          112 DVIVCGGT-LGIFIATALSFK----GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~----G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .||||||| +|+.+|..|.++    +++|+||++.+.+...+. .++.                        +      |
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~-~L~~------------------------~------~   53 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV-HLSS------------------------Y------F   53 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC-cchH------------------------h------H
Confidence            69999965 688888888653    689999998876543321 1110                        0      0


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      .+. .            ...+.....+.+.+.|++++.+++|++++.+.  .+|.+++|+++.+|.||-|+|...
T Consensus        54 ~~~-~------------~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         54 SHH-T------------AEELSLVREGFYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYP  113 (847)
T ss_pred             cCC-C------------HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCc
Confidence            000 0            00000001122345689999999998886543  456667788999999999999864

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=96.25  E-value=0.011  Score=62.82  Aligned_cols=62  Identities=16%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ..+++..+...|.+.+.+ |++++++++|+++..+++.+.|++.+|..++|+.||.|.|.+|.
T Consensus       130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence            357999999999999988 99999999999999888888888878877999999999999885

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PTZ00058 glutathione reductase; Provisional

Probab=96.24  E-value=0.051  Score=60.95  Aligned_cols=98  Identities=14%  Similarity=0.164  Sum_probs=69.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+..               |      .                       
T Consensus       239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i---------------l------~-----------------------  274 (561)
T PTZ00058        239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRL---------------L------R-----------------------  274 (561)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc---------------c------c-----------------------
Confidence            58899976 5888999999999999999876410               0      0                       


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCC-cEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG-KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g-~~i~ArlVV~ADG~~S~vr  264 (546)
                                .+| ..+.+.+.+.+++.|++++.++.+.++..+++ ++.+...++ +++.++.||-|.|....+.
T Consensus       275 ----------~~d-~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~  339 (561)
T PTZ00058        275 ----------KFD-ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE  339 (561)
T ss_pred             ----------cCC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence                      001 12234455666778999999999999976544 466655444 5799999999999875543

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.24  E-value=0.0054  Score=72.49  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+||+|||| |+|+++|..|+++|++|+|+|+.+.++
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG  573 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG  573 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence            579999995 579999999999999999999886543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.20  E-value=0.005  Score=63.03  Aligned_cols=34  Identities=38%  Similarity=0.499  Sum_probs=30.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++||||||+| +|+.+|+.||.+|.+|+++|+...
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            6899999977 599999999999999999997654

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.20  E-value=0.0054  Score=68.01  Aligned_cols=38  Identities=29%  Similarity=0.376  Sum_probs=33.0

Q ss_pred             CCCcccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCC
Q 009027          107 AVGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK  144 (546)
Q Consensus       107 ~~~~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~~~~  144 (546)
                      ....||.|||||| +|+.+|+.|++. -++|+|||+...+
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            3447999999975 799999999976 7899999998766

>TIGR02731 phytoene_desat phytoene desaturase

Probab=96.17  E-value=0.0052  Score=66.78  Aligned_cols=55  Identities=20%  Similarity=0.233  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-E-EEEEcCCc-----EEEcCEEEEecCCCh
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGK-----ILSSHLIIDAMGNFS  261 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v-~V~~~~g~-----~i~ArlVV~ADG~~S  261 (546)
                      +-+.|.+.+.+.|++|+.+++|++|..++++ + .|.+.+++     ++.||-||-|...+.
T Consensus       215 l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~  276 (453)
T TIGR02731       215 LCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI  276 (453)
T ss_pred             HHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence            3455666666779999999999999876555 3 35555554     799999999987643

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.12  E-value=0.024  Score=61.85  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=31.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+||+|||| ++|+++|..|+++|++|+|+|+...++
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~G  169 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPG  169 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            579999996 579999999999999999999986553

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02676 polyamine oxidase

Probab=96.10  E-value=0.0067  Score=66.85  Aligned_cols=41  Identities=12%  Similarity=0.093  Sum_probs=37.6

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       220 ~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      ..|+.+++|++|..++++|+|++++|++++|+.||.|....
T Consensus       245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~  285 (487)
T PLN02676        245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLG  285 (487)
T ss_pred             CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChH
Confidence            57999999999999999999999999899999999999754

>PLN02785 Protein HOTHEAD

Probab=96.09  E-value=0.0059  Score=68.73  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=30.5

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      +..||+|||||| +|+.+|..|++ +.+|+|||+...
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            446999999965 69999999999 699999999874

>TIGR01810 betA choline dehydrogenase

Probab=96.08  E-value=0.005  Score=68.58  Aligned_cols=32  Identities=31%  Similarity=0.340  Sum_probs=28.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G-~rVlLlEr~~~  143 (546)
                      |+|||||| +|+.+|..||+.| ++|+|||+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            89999965 6999999999998 79999999863

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.04  E-value=0.0068  Score=64.89  Aligned_cols=35  Identities=37%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      -+|+||||| +|+++|+.||..|++|.|+||.+..+
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG  160 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG  160 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            469999976 69999999999999999999998765

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=96.04  E-value=0.0066  Score=65.80  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR  146 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~  146 (546)
                      -|+|+||| +|+++|..||.+|++|+|+|++...+.
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            38999977 699999999999999999999988764

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.01  E-value=0.089  Score=57.32  Aligned_cols=97  Identities=21%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+....                                          . 
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~-  207 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP------------------------------------------L-  207 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------------------------------------------c-
Confidence            59999976 699999999999999999998742100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCC--cEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG--KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g--~~i~ArlVV~ADG~~S~vr  264 (546)
                                 .| ..+.+.+.+.+++. ++++.++++.++..+++ .++++..++  .++.++.||.|.|......
T Consensus       208 -----------~d-~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~  271 (460)
T PRK06292        208 -----------ED-PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD  271 (460)
T ss_pred             -----------hh-HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence                       00 12234445566667 89999999999976554 455544333  4799999999999865543

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.96  E-value=0.012  Score=67.19  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=31.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ..+|+|||| ++|+++|..|++.|++|+|+|+.+.++
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G  363 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG  363 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            469999995 679999999999999999999987544

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.95  E-value=0.03  Score=56.47  Aligned_cols=62  Identities=15%  Similarity=0.126  Sum_probs=43.1

Q ss_pred             ceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEE-EEEc---C-CcEEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-LLLA---E-GKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~-V~~~---~-g~~i~ArlVV~ADG~~S~  262 (546)
                      -+|++..|.+++.+.|.+.| ++++.+ +|.++..+..++. +-.+   + .....++.+|.++|-+++
T Consensus       142 aqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  142 AQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             ceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence            35899999999999998876 587776 5666753333221 1111   1 336778899999998875

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.048  Score=53.19  Aligned_cols=115  Identities=19%  Similarity=0.278  Sum_probs=77.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .-.|+||| ||++-++|+.+|++-+|-+|+|-....+......+             .+..++|     .       |.+
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQL-------------tTTT~ve-----N-------fPG   62 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQL-------------TTTTDVE-----N-------FPG   62 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCcee-------------eeeeccc-----c-------CCC
Confidence            34799999 78899999999999999999995433221111000             0000111     0       111


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                           .|+    +|.-..|.+.+++++.+.|.+|+.+ .|.+++....-.+|.+ +.+.++|+-||-|.|+.
T Consensus        63 -----FPd----gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAs  123 (322)
T KOG0404|consen   63 -----FPD----GITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGAS  123 (322)
T ss_pred             -----CCc----ccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccc
Confidence                 111    2334567788888888899988765 5778888888888877 55679999999999975

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.90  E-value=0.019  Score=62.90  Aligned_cols=36  Identities=31%  Similarity=0.398  Sum_probs=31.5

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .++|+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G  179 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG  179 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            479999996 579999999999999999999987654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.82  E-value=0.019  Score=62.89  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=31.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ..+|+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g  177 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG  177 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            478999995 579999999999999999999987543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02546 glutathione reductase

Probab=95.78  E-value=0.11  Score=58.24  Aligned_cols=98  Identities=14%  Similarity=0.120  Sum_probs=68.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+...                     .                       
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il---------------------~-----------------------  289 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL---------------------R-----------------------  289 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc---------------------c-----------------------
Confidence            58888866 58888888888899999998653100                     0                       


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                                .++ ..+...+.+.+.+.|++++.++++.++...++ .+.+.+.+++...++.||-|.|......
T Consensus       290 ----------~~d-~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        290 ----------GFD-EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             ----------ccC-HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence                      001 12334556666778999999999999876444 4556554454455899999999887653

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=95.72  E-value=0.01  Score=65.08  Aligned_cols=54  Identities=15%  Similarity=0.152  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeC--Ce---E-EEEEcCC---cEEEcCEEEEecCCC
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---A-VLLLAEG---KILSSHLIIDAMGNF  260 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dg---v-~V~~~~g---~~i~ArlVV~ADG~~  260 (546)
                      +.+.|.+.+++.|++|+.+++|++|..++  ++   + .|.+.+|   +++.||.||-|....
T Consensus       221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            44556777788899999999999998764  22   2 2334433   469999999999876

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.71  E-value=0.013  Score=63.22  Aligned_cols=52  Identities=17%  Similarity=0.278  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-cCCcEEEcCEEEEec
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGKILSSHLIIDAM  257 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~~i~ArlVV~AD  257 (546)
                      .|-+.+...++-.|+....++.+.++..++++..+.+ .+|++++|+.||+..
T Consensus       233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dp  285 (438)
T PF00996_consen  233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDP  285 (438)
T ss_dssp             HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEG
T ss_pred             cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECC
Confidence            3445555555567999999999999998776655443 378899999999644

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.68  E-value=0.12  Score=53.63  Aligned_cols=134  Identities=21%  Similarity=0.276  Sum_probs=71.6

Q ss_pred             CCCcccEEEEcchHHHH-HHHHHHhCCCeEEEEcCC-CCCCCc---------ccccCCHHH--HHHHHHcCCCCcccchh
Q 009027          107 AVGTFDVIVCGGTLGIF-IATALSFKGLRVAIVERN-TLKGRE---------QEWNISRKE--LLELVESGILVEDDIDE  173 (546)
Q Consensus       107 ~~~~yDVIIVGGg~G~~-~Aa~LA~~G~rVlLlEr~-~~~~~~---------r~~~Is~~~--l~~L~~lGl~~~~~ie~  173 (546)
                      .+.+||..|||||.|+. +|...|..|.+|.|+|-. ...+.+         --|+.+..+  ++.-.+-|+-..     
T Consensus        17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~-----   91 (478)
T KOG0405|consen   17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN-----   91 (478)
T ss_pred             cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc-----
Confidence            44589999999998555 555667889999999966 444421         125443221  111111121000     


Q ss_pred             hhhhccCCCcccccCCccccc-cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEc
Q 009027          174 ATATKFNPNRCGFEGKGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSS  250 (546)
Q Consensus       174 ~i~~~~~~~~v~f~~~~~l~~-~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~A  250 (546)
                              ....|+ ...+.. .+.  + |  .+|...-...+..++++++++..-   ..++..+.|+..|++  .++|
T Consensus        92 --------~~~~fd-W~~ik~krda--y-i--~RLngIY~~~L~k~~V~~i~G~a~---f~~~~~v~V~~~d~~~~~Yta  154 (478)
T KOG0405|consen   92 --------EEGSFD-WKVIKQKRDA--Y-I--LRLNGIYKRNLAKAAVKLIEGRAR---FVSPGEVEVEVNDGTKIVYTA  154 (478)
T ss_pred             --------cccCCc-HHHHHhhhhH--H-H--HHHHHHHHhhccccceeEEeeeEE---EcCCCceEEEecCCeeEEEec
Confidence                    000110 000000 000  0 0  123344444555567788777421   234667888887774  4899


Q ss_pred             CEEEEecCCChH
Q 009027          251 HLIIDAMGNFSP  262 (546)
Q Consensus       251 rlVV~ADG~~S~  262 (546)
                      +.+..|.|.+-.
T Consensus       155 k~iLIAtGg~p~  166 (478)
T KOG0405|consen  155 KHILIATGGRPI  166 (478)
T ss_pred             ceEEEEeCCccC
Confidence            999999997643

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.68  E-value=0.053  Score=58.49  Aligned_cols=46  Identities=17%  Similarity=0.150  Sum_probs=34.0

Q ss_pred             EEEeCceEEEEEEe--CCeEEEEEcCCcEEEcCEEEEecCCChHHHHH
Q 009027          221 VIFEGYSVSSICTY--ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (546)
Q Consensus       221 ~v~~~t~v~~i~~~--~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~q  266 (546)
                      .....++++++...  ..+..+...+|....|+++|-|.|+.-+....
T Consensus       122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~  169 (474)
T COG4529         122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP  169 (474)
T ss_pred             eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence            34455667777666  55677888889999999999999987655543

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.63  E-value=0.019  Score=63.08  Aligned_cols=36  Identities=33%  Similarity=0.426  Sum_probs=31.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHh--CCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSF--KGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~--~G~rVlLlEr~~~~~  145 (546)
                      ...|+|||| |+|+.+|..|++  .|++|.|+|+.+.++
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            568999995 679999999987  799999999998775

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.61  E-value=0.14  Score=58.43  Aligned_cols=97  Identities=12%  Similarity=0.041  Sum_probs=66.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+..-.                 +                          
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-----------------~--------------------------  350 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-----------------L--------------------------  350 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-----------------c--------------------------
Confidence            58999976 688899999999999999997642100                 0                          


Q ss_pred             cccccccccceeCHHHHHHHHHHHH-HhcCCEEEeCceEEEEEEeCCe--EEEEEcC-------C--------cEEEcCE
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENA--AVLLLAE-------G--------KILSSHL  252 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a-~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~-------g--------~~i~Arl  252 (546)
                                 +|+ .+.+.+.+.+ .+.|++++.++.|.++..+++.  +.|.+.+       +        +++.++.
T Consensus       351 -----------~d~-eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~  418 (659)
T PTZ00153        351 -----------LDA-DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS  418 (659)
T ss_pred             -----------CCH-HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCE
Confidence                       011 1222333332 3578999999999999766543  5555421       1        2799999


Q ss_pred             EEEecCCChHH
Q 009027          253 IIDAMGNFSPV  263 (546)
Q Consensus       253 VV~ADG~~S~v  263 (546)
                      ||-|.|..-.+
T Consensus       419 VlvAtGr~Pnt  429 (659)
T PTZ00153        419 CLVATGRKPNT  429 (659)
T ss_pred             EEEEECcccCC
Confidence            99999987554

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=95.50  E-value=0.016  Score=67.07  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=31.9

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ...+|+||||| +|+++|..|+++|++|+|+|+...++
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G  274 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence            36899999976 59999999999999999999876553

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.49  E-value=0.033  Score=63.67  Aligned_cols=36  Identities=31%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ..+|+|||| ++|+++|..|++.|++|+|+|+.+.++
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G  229 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG  229 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            479999995 579999999999999999999987543

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.47  E-value=0.034  Score=57.09  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=59.9

Q ss_pred             cEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCCC--ccccc----CCHHHH---HHHHHcCCCCcccch---hhhhhc
Q 009027          112 DVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGR--EQEWN----ISRKEL---LELVESGILVEDDID---EATATK  178 (546)
Q Consensus       112 DVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~~--~r~~~----Is~~~l---~~L~~lGl~~~~~ie---~~i~~~  178 (546)
                      -|.|||||+ |+-+|+.+|++|++|.|.|-.+....  +..-+    ++-+++   ..-...|++.+ |+.   ++|...
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~-EMR~lgSlii~~   83 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKA-EMRLLGSLIIEA   83 (439)
T ss_pred             ceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHH-HHHHhhhHHhhh
Confidence            588999885 88899999999999999996553321  11101    111111   11122233321 111   111111


Q ss_pred             cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCC-EEEeCceEEEE
Q 009027          179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSI  231 (546)
Q Consensus       179 ~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~-~v~~~t~v~~i  231 (546)
                                ...-.+|-.-.++|||+.|-+.+.++++++.. +|+ ..+|+.+
T Consensus        84 ----------Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vi-reEvt~i  126 (439)
T COG1206          84 ----------ADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVI-REEVTEI  126 (439)
T ss_pred             ----------hhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEE-ccccccC
Confidence                      00111223334789999999999999988865 444 3345554

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.46  E-value=0.025  Score=64.45  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ..+|+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G  346 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG  346 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            468999995 579999999999999999999988654

>PRK10262 thioredoxin reductase; Provisional

Probab=95.42  E-value=0.14  Score=52.93  Aligned_cols=93  Identities=16%  Similarity=0.106  Sum_probs=63.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                          . 
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------~-  184 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------E-  184 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC------------------------------------------C-
Confidence            69999976 599999999999999999997642100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcC------CcEEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAE------GKILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~------g~~i~ArlVV~ADG~~S  261 (546)
                                    ..+.+.+.+++++.|++++.++.++++..+++++ .|++.+      .+++.++.||-|.|...
T Consensus       185 --------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p  248 (321)
T PRK10262        185 --------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  248 (321)
T ss_pred             --------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence                          0112334555566788999999999987654332 233332      13799999998888653

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.41  E-value=0.018  Score=59.12  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=29.0

Q ss_pred             CCcccEEEEcchH-HHHHHHHHHhCCCeEEEEcC
Q 009027          108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVER  140 (546)
Q Consensus       108 ~~~yDVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr  140 (546)
                      +.+||.||+|||. |+++|-..|..|.+|+++|-
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            4589999999885 77888899999999999994

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=95.32  E-value=0.013  Score=62.34  Aligned_cols=61  Identities=21%  Similarity=0.260  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChHHHHHh
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVKQI  267 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~vr~ql  267 (546)
                      +-.++.+-++++|++|+.+.+|.+|..+++.++ |.++||++++++.||-=.+.+-..-+.+
T Consensus       266 vs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  266 VSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             HHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence            334566678889999999999999988875443 7788999999999997666555444433

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.31  E-value=0.036  Score=62.24  Aligned_cols=36  Identities=33%  Similarity=0.326  Sum_probs=30.9

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .-+|+|||+ ++|+++|..|++.|++|+|+|+.+.++
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G  173 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG  173 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            357999995 679999999999999999999887554

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.28  E-value=0.078  Score=56.75  Aligned_cols=59  Identities=22%  Similarity=0.392  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc-EEEcCEEEEecCCC-hHHHHHh
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNF-SPVVKQI  267 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~-~i~ArlVV~ADG~~-S~vr~ql  267 (546)
                      .++.+...+.+++.|++++.++.|++++  ++++++.  +|. +|.|+.+|=|.|.. |++.+.+
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~v~~~--~g~~~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVT--PDGVTLK--DGEEEIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEEC--CCcEEEc--cCCeeEecCEEEEcCCCcCChhhhhc
Confidence            3455666777888999999999999874  4555544  555 59999999999965 6677764

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=95.21  E-value=0.057  Score=55.26  Aligned_cols=111  Identities=23%  Similarity=0.237  Sum_probs=63.0

Q ss_pred             CCCcccEEEEcchH-HHHHHHHHHhC-CC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCc
Q 009027          107 AVGTFDVIVCGGTL-GIFIATALSFK-GL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR  183 (546)
Q Consensus       107 ~~~~yDVIIVGGg~-G~~~Aa~LA~~-G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~  183 (546)
                      +..+|.|+|||||. |+.+|+.+.++ |- +|.+||....--....|.+..+.+..|..-+              ..   
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~sr--------------r~---   98 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSR--------------RK---   98 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhcc--------------Cc---
Confidence            34589999999886 77888889865 43 7889985542112234544333332221110              00   


Q ss_pred             ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       184 v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                           ...+ .|.        .  ..++.+++.+               .+++.-+|.+++|++|+.|++|.|+|..-..
T Consensus        99 -----~a~l-iP~--------~--a~wi~ekv~~---------------f~P~~N~v~t~gg~eIsYdylviA~Giql~y  147 (446)
T KOG3851|consen   99 -----QASL-IPK--------G--ATWIKEKVKE---------------FNPDKNTVVTRGGEEISYDYLVIAMGIQLDY  147 (446)
T ss_pred             -----cccc-ccC--------C--cHHHHHHHHh---------------cCCCcCeEEccCCcEEeeeeEeeeeeceecc
Confidence                 0000 010        0  1233344332               2345556777889999999999999987544


Q ss_pred             HH
Q 009027          264 VK  265 (546)
Q Consensus       264 r~  265 (546)
                      -+
T Consensus       148 ~~  149 (446)
T KOG3851|consen  148 GK  149 (446)
T ss_pred             ch
Confidence            33

>PLN02529 lysine-specific histone demethylase 1

Probab=95.21  E-value=0.024  Score=65.17  Aligned_cols=38  Identities=16%  Similarity=0.329  Sum_probs=32.3

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEec
Q 009027          219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (546)
Q Consensus       219 G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~AD  257 (546)
                      +..|+.+++|++|..++++|+|+. ++++++||.||.+-
T Consensus       366 ~L~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTV  403 (738)
T PLN02529        366 GVPIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTV  403 (738)
T ss_pred             cCCEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECC
Confidence            457999999999999999999875 55689999999764

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.09  E-value=0.26  Score=55.52  Aligned_cols=59  Identities=10%  Similarity=0.234  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-E---EE-EEcCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A---VL-LLAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v---~V-~~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..+...|.+++.+.|++++.++.++++..++++ |   .+ ...+|+  .++|+-||-|+|..+.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence            467888888888889999999999999876443 2   22 223454  68999999999988753

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=95.07  E-value=0.03  Score=54.09  Aligned_cols=36  Identities=31%  Similarity=0.490  Sum_probs=30.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~  145 (546)
                      ..||||||+| +|+++|+..+++  .++|.+||..-.|+
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG  114 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG  114 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence            3699999965 799999999843  89999999888776

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=95.07  E-value=0.22  Score=50.22  Aligned_cols=90  Identities=20%  Similarity=0.152  Sum_probs=61.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+|+||| .|.-+|..|++.|.+|.++++.+...      .                                    .
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------~------------------------------------~  179 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------A------------------------------------E  179 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC------c------------------------------------C
Confidence            379999975 58889999999999999998753100      0                                    0


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEc---CC--cEEEcCEEEEecCCCh
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGNFS  261 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~---~g--~~i~ArlVV~ADG~~S  261 (546)
                                         ..+.+.+.+. |++++.++.++++..++.-..+++.   ++  .++.+++||-|.|...
T Consensus       180 -------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~  238 (300)
T TIGR01292       180 -------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP  238 (300)
T ss_pred             -------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence                               0122334455 8899999999988765432234332   23  4799999999999654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=94.98  E-value=0.043  Score=59.44  Aligned_cols=58  Identities=16%  Similarity=0.266  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhc
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR  268 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~  268 (546)
                      |.+.|.+++   .++++.+++|+.+..+..+..+.+.+|.++.++-||-+ +-...+.+.++
T Consensus       217 l~~al~~~l---~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t-~p~~~l~~ll~  274 (444)
T COG1232         217 LIEALAEKL---EAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVIST-APLPELARLLG  274 (444)
T ss_pred             HHHHHHHHh---hhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEc-CCHHHHHHHcC
Confidence            334444444   34599999999999987788887778888999999854 33434444443

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.90  E-value=0.23  Score=55.08  Aligned_cols=89  Identities=20%  Similarity=0.184  Sum_probs=62.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+...                                            .
T Consensus       354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~--------------------------------------------~  389 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK--------------------------------------------A  389 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------h
Confidence            79999976 69999999999999999998553100                                            0


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE-EEEcC---C--cEEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~~---g--~~i~ArlVV~ADG~~S  261 (546)
                                       ...+.+.+.+ .|++++.++.++++..+++.+. |.+.+   +  +++.++.||-|.|...
T Consensus       390 -----------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P  450 (515)
T TIGR03140       390 -----------------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP  450 (515)
T ss_pred             -----------------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence                             0012233333 5899999999998876545543 55432   2  3789999999998653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02487 zeta-carotene desaturase

Probab=94.84  E-value=0.031  Score=62.70  Aligned_cols=54  Identities=17%  Similarity=0.161  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeC--Ce----EEEEEc---CCcEEEcCEEEEecCCC
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA----AVLLLA---EGKILSSHLIIDAMGNF  260 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dg----v~V~~~---~g~~i~ArlVV~ADG~~  260 (546)
                      |-+.+.+.+++.|++|+.+++|.++..+.  ++    ..|++.   +++.+.||.||-|.+..
T Consensus       297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            45566677788999999999999998873  33    234542   34479999999999977

>PRK13984 putative oxidoreductase; Provisional

Probab=94.82  E-value=0.068  Score=60.53  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ..+|+|||+ ++|+++|..|+++|++|+|+|+.+.++
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g  319 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG  319 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            578999995 579999999999999999999987654

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=94.73  E-value=0.28  Score=50.46  Aligned_cols=56  Identities=20%  Similarity=0.156  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHhcC--CEEEeCceEEEEEEeCCeEE-EEE--cCCc--EEEcCEEEEecCCChH
Q 009027          207 LIEIVKKRFISLG--GVIFEGYSVSSICTYENAAV-LLL--AEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       207 L~~~L~~~a~~~G--~~v~~~t~v~~i~~~~dgv~-V~~--~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      |...|.+.+.+..  +.|..+++|+++..+++.|. |+.  .+|+  .+.++-||-|+|..+-
T Consensus       145 L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  145 LSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             HHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence            4445555555544  48899999999997777654 333  2343  6889999999998874

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=94.68  E-value=0.15  Score=54.89  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=19.6

Q ss_pred             CCcEEEeCCCCCCCCCCCCCcchhhH
Q 009027          387 FNRILQFGDASGIQSPVSFGGFGSLT  412 (546)
Q Consensus       387 ~~rvlLVGDAA~~v~Plsg~G~g~~l  412 (546)
                      .+|+..+|-.-+-.||+. +|=|.++
T Consensus       382 ~~Nl~a~G~vL~G~d~~~-~gcG~GV  406 (419)
T TIGR03378       382 IENLYAIGAVLGGYDPIF-EGCGSGV  406 (419)
T ss_pred             cccceEechhhcCCChHh-cCCCchh
Confidence            689999999999999985 5555443

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=94.64  E-value=0.04  Score=64.65  Aligned_cols=32  Identities=22%  Similarity=0.440  Sum_probs=28.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCC
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      ...|+||| ||+|+++|..|+++|++|+|+|+.
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            46899999 567999999999999999999985

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=94.44  E-value=0.18  Score=53.99  Aligned_cols=104  Identities=18%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             ccEEEEcchH-HHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          111 FDVIVCGGTL-GIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       111 yDVIIVGGg~-G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .-|||+|||- |+.+|..|+++  +.+|+||||+..--.+       .   .|-           ++..     +.    
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~-------p---lL~-----------eva~-----g~----   53 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT-------P---LLY-----------EVAT-----GT----   53 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc-------h---hhh-----------hhhc-----CC----
Confidence            4699999985 77788899987  4899999998642110       0   010           0000     00    


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                                    ++...+..-+.+.++..+ +++. ..+|++|+.++..  |.++++..+..|.+|-|.|..+
T Consensus        54 --------------l~~~~i~~p~~~~~~~~~~v~~~-~~~V~~ID~~~k~--V~~~~~~~i~YD~LVvalGs~~  111 (405)
T COG1252          54 --------------LSESEIAIPLRALLRKSGNVQFV-QGEVTDIDRDAKK--VTLADLGEISYDYLVVALGSET  111 (405)
T ss_pred             --------------CChhheeccHHHHhcccCceEEE-EEEEEEEcccCCE--EEeCCCccccccEEEEecCCcC
Confidence                          011111111222333334 4554 4578888776655  4555667899999999999875

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=94.43  E-value=0.2  Score=55.53  Aligned_cols=70  Identities=16%  Similarity=0.214  Sum_probs=56.6

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEcCEEEEecCCChH-HHHHhcC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIRS  269 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---~g--~~i~ArlVV~ADG~~S~-vr~ql~~  269 (546)
                      ..+|+.++...+.+.|.+.|++++..++|+++..+++.+. |++.   +|  .+|+|+.||-|.|.+|. +.+.++.
T Consensus       123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~  199 (516)
T TIGR03377       123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL  199 (516)
T ss_pred             cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence            3689999999999999999999999999999988777643 4442   24  27999999999999987 5555543

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=94.37  E-value=0.33  Score=52.36  Aligned_cols=96  Identities=22%  Similarity=0.301  Sum_probs=72.8

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE  191 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~~  191 (546)
                      |+++||| +|+-+|+.|...+.+|+++++.+.+-               ..                             
T Consensus       216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~---------------~~-----------------------------  251 (478)
T KOG1336|consen  216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL---------------PR-----------------------------  251 (478)
T ss_pred             EEEECchHHHHHHHHHHHhcCceEEEEccCccch---------------hh-----------------------------
Confidence            8999987 69999999998899999998664211               00                             


Q ss_pred             ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEcCEEEEecCCChH
Q 009027          192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      +..          ..+.+...+..++.|++++.++.+.++..++++  ..|.+.+++++.|++||-.-|+.+.
T Consensus       252 lf~----------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~  314 (478)
T KOG1336|consen  252 LFG----------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN  314 (478)
T ss_pred             hhh----------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence            000          123344555667789999999999999887754  4577778999999999999998754

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=94.36  E-value=0.061  Score=58.68  Aligned_cols=54  Identities=35%  Similarity=0.383  Sum_probs=43.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCc---------ccccCCHHHHHHHHHcC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESG  164 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~---------r~~~Is~~~l~~L~~lG  164 (546)
                      -.|.||| ||+|+++|..|++.|+.|+++|+.+.++.-         -.-.|....++.|...|
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G  187 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG  187 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC
Confidence            5799999 578999999999999999999999876521         11246667888888888

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=93.83  E-value=0.084  Score=58.17  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      ..+|+|||| ++|+++|..|+++|++|+|+|+.+.+
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            369999996 57999999999999999999988754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=93.79  E-value=0.63  Score=48.90  Aligned_cols=51  Identities=27%  Similarity=0.379  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ...+.+.+.+.|++++.++++.++.  ++  .|.+++|.++.+++||-|.|...+
T Consensus       194 ~~~~~~~l~~~gV~v~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       194 RRLVLRLLARRGIEVHEGAPVTRGP--DG--ALILADGRTLPADAILWATGARAP  244 (364)
T ss_pred             HHHHHHHHHHCCCEEEeCCeeEEEc--CC--eEEeCCCCEEecCEEEEccCCChh
Confidence            3455666777899999999998874  33  456667889999999999997653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PLN02976 amine oxidase

Probab=93.78  E-value=0.077  Score=64.36  Aligned_cols=38  Identities=26%  Similarity=0.396  Sum_probs=32.1

Q ss_pred             CCCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       107 ~~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      .+..+||+||||| +|+++|+.|+++|++|+|+|+...+
T Consensus       690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v  728 (1713)
T PLN02976        690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI  728 (1713)
T ss_pred             cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence            4446899999965 6999999999999999999987654

>PLN03000 amine oxidase

Probab=93.67  E-value=0.077  Score=61.82  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=31.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ..||+||||| .|+.+|..|++.|++|+|+|++..++
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG  220 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            5899999976 59999999999999999999876553

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.41  E-value=0.8  Score=49.94  Aligned_cols=31  Identities=29%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++..
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            69999977 69999999999999999998764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=93.29  E-value=0.77  Score=50.08  Aligned_cols=31  Identities=32%  Similarity=0.337  Sum_probs=26.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      .|+||||| .|.-+|..|++.|. +|.++++..
T Consensus       275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            69999976 69999999999998 899998753

>PTZ00188 adrenodoxin reductase; Provisional

Probab=93.19  E-value=0.13  Score=56.41  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             cccEEEEcc-hHHHHHHHHHH-hCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALS-FKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA-~~G~rVlLlEr~~~~~  145 (546)
                      ..-|+|||| |+|+.+|..|+ +.|++|.|+||.+.|+
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            356999995 67888888664 7799999999998876

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=93.07  E-value=0.73  Score=50.54  Aligned_cols=31  Identities=23%  Similarity=0.237  Sum_probs=24.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      .|+||||| .|+-+|..+.+.|. +|.+++...
T Consensus       283 ~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        283 HVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            59999976 69989888888886 688666544

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=92.97  E-value=0.8  Score=49.57  Aligned_cols=34  Identities=15%  Similarity=0.076  Sum_probs=24.5

Q ss_pred             cccEEEEcchHHHHHH-HHHH----hCCCeEEEEcCCCC
Q 009027          110 TFDVIVCGGTLGIFIA-TALS----FKGLRVAIVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg~G~~~A-a~LA----~~G~rVlLlEr~~~  143 (546)
                      +.|.|+.+|-+|+-.| ..++    +.|.+|.++|..+.
T Consensus       216 ~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp  254 (422)
T PRK05329        216 DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP  254 (422)
T ss_pred             CCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC
Confidence            4687777776777666 3333    56999999997764

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=92.90  E-value=0.22  Score=56.38  Aligned_cols=104  Identities=19%  Similarity=0.317  Sum_probs=73.9

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE  191 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~~  191 (546)
                      .+||||| +|+=+|..|...|.+|.|++=.+.                |-          +.                 .
T Consensus       148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~----------------lM----------er-----------------Q  184 (793)
T COG1251         148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT----------------LM----------ER-----------------Q  184 (793)
T ss_pred             cEEEccchhhhHHHHHHHhCCCceEEEeecch----------------HH----------HH-----------------h
Confidence            4778877 599999999999999999973321                10          00                 0


Q ss_pred             ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC--hHHHHHhcC
Q 009027          192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF--SPVVKQIRS  269 (546)
Q Consensus       192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~--S~vr~ql~~  269 (546)
                                +|+ .=..+|..++.+.|.+++.+...+.+...+.-..|.++||..+.|++||-|+|.+  .-++++.++
T Consensus       185 ----------LD~-~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGl  253 (793)
T COG1251         185 ----------LDR-TAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGL  253 (793)
T ss_pred             ----------hhh-HHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCc
Confidence                      000 0124566666778999998888887766444556888999999999999999975  446777665


Q ss_pred             C
Q 009027          270 G  270 (546)
Q Consensus       270 ~  270 (546)
                      .
T Consensus       254 a  254 (793)
T COG1251         254 A  254 (793)
T ss_pred             C
Confidence            4

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=92.65  E-value=0.97  Score=50.23  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=61.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      +|+||||| .|.-+|..|+..|.+|.|+++.+....                                          . 
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------------------------------------~-  389 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------------------------------------D-  389 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------------------------------------------c-
Confidence            79999976 699999999999999999986642100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~---~g--~~i~ArlVV~ADG~~S  261 (546)
                                        ..+.+++.+ .|++++.++.++++..+++.++ |++.   ++  +++.++.|+-|.|...
T Consensus       390 ------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p  449 (517)
T PRK15317        390 ------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP  449 (517)
T ss_pred             ------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence                              011222222 4889999999999876645443 4443   23  3689999999988653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=92.61  E-value=0.46  Score=49.96  Aligned_cols=129  Identities=19%  Similarity=0.080  Sum_probs=68.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCc------ccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGRE------QEWNISRKELLELVESGILVEDDIDEATATKFN  180 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~--rVlLlEr~~~~~~~------r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~  180 (546)
                      ...|+||||| .++-++..|.+++-  +|.++=|.+.....      .+ -.+++-++.+..+.-    +....+..+. 
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne-~f~P~~v~~f~~l~~----~~R~~~l~~~-  263 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNE-IFSPEYVDYFYSLPD----EERRELLREQ-  263 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHG-GGSHHHHHHHHTS-H----HHHHHHHHHT-
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhh-hcCchhhhhhhcCCH----HHHHHHHHHh-
Confidence            5689999987 58888888887764  89999887643211      01 134444433332211    0000000000 


Q ss_pred             CCcccccCCcccccccccc-ceeCHHHHHH---HHHH-HHHh-cCCEEEeCceEEEEEEeCC-eEEEEEcC---C--cEE
Q 009027          181 PNRCGFEGKGEIWVEDILN-LGVSPAKLIE---IVKK-RFIS-LGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KIL  248 (546)
Q Consensus       181 ~~~v~f~~~~~l~~~~~l~-~~V~~~~L~~---~L~~-~a~~-~G~~v~~~t~v~~i~~~~d-gv~V~~~~---g--~~i  248 (546)
                                     ..++ -+|+++.+.+   .+.+ ++.. ....++.+++|+++...++ ++.+++.+   +  .++
T Consensus       264 ---------------~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~  328 (341)
T PF13434_consen  264 ---------------RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETL  328 (341)
T ss_dssp             ---------------GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEE
T ss_pred             ---------------HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEE
Confidence                           0011 2355554432   2222 2322 2369999999999999885 89888864   2  389


Q ss_pred             EcCEEEEecCC
Q 009027          249 SSHLIIDAMGN  259 (546)
Q Consensus       249 ~ArlVV~ADG~  259 (546)
                      .+|.||.|+|.
T Consensus       329 ~~D~VilATGy  339 (341)
T PF13434_consen  329 EVDAVILATGY  339 (341)
T ss_dssp             EESEEEE---E
T ss_pred             ecCEEEEcCCc
Confidence            99999999995

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=91.89  E-value=1.8  Score=45.20  Aligned_cols=41  Identities=20%  Similarity=0.167  Sum_probs=32.2

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       219 G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                      +..|..++.|..+..-+|++.|...+|++-+-|-||-|.=.
T Consensus       231 ~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~  271 (447)
T COG2907         231 RGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHP  271 (447)
T ss_pred             cceeecCCceeeeeeCCCceEEecCCCCccccceeeeecCh
Confidence            34688999999999999999998877876666666666543

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=91.88  E-value=1.3  Score=46.60  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=26.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~r-VlLlEr~~  142 (546)
                      .|+|+||| .|+-+|..|++.|.+ |.|+++..
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            59999965 699999999999997 99998754

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=91.86  E-value=0.23  Score=51.94  Aligned_cols=36  Identities=33%  Similarity=0.597  Sum_probs=32.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .|||||.| |-.=+..+++|+..|.+|++|||+..-+
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG   42 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG   42 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence            79999999 5569999999999999999999998754

>PRK12831 putative oxidoreductase; Provisional

Probab=91.82  E-value=1.7  Score=47.57  Aligned_cols=31  Identities=32%  Similarity=0.344  Sum_probs=27.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+++..
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            79999977 69999999999999999998754

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=91.60  E-value=0.17  Score=53.76  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=28.1

Q ss_pred             cccEEEEcchH-HHHHHHHHHhCCCeEE--EEcCCCC
Q 009027          110 TFDVIVCGGTL-GIFIATALSFKGLRVA--IVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg~-G~~~Aa~LA~~G~rVl--LlEr~~~  143 (546)
                      .-+|+|||||+ |+++|+.|++++-+|.  |+|..+-
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R   47 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR   47 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence            46899999875 9999999999988875  4897653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=91.52  E-value=1.1  Score=53.84  Aligned_cols=95  Identities=18%  Similarity=0.147  Sum_probs=64.9

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      .|+|+|| ..|+-+|..|++.|. .|+|+|..+..        .                                    
T Consensus       319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------~------------------------------------  354 (985)
T TIGR01372       319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------S------------------------------------  354 (985)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------h------------------------------------
Confidence            6899996 469999999999995 57888754310        0                                    


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc----CCcEEEcCEEEEecCCChH--H
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMGNFSP--V  263 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~----~g~~i~ArlVV~ADG~~S~--v  263 (546)
                                         ..+.+++++.|++++.++.++.+..++....|++.    +++++.|+.|+-+.|....  +
T Consensus       355 -------------------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L  415 (985)
T TIGR01372       355 -------------------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL  415 (985)
T ss_pred             -------------------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence                               00234456678999999999888654332223332    3458999999999997654  5


Q ss_pred             HHHhcC
Q 009027          264 VKQIRS  269 (546)
Q Consensus       264 r~ql~~  269 (546)
                      .++++.
T Consensus       416 ~~~lg~  421 (985)
T TIGR01372       416 FSQRGG  421 (985)
T ss_pred             HHhcCC
Confidence            666654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.48  E-value=0.28  Score=44.70  Aligned_cols=30  Identities=27%  Similarity=0.551  Sum_probs=26.8

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|+|+ .+|+..|+.|++.|++|.++.|.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            689995 579999999999999999998764

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.46  E-value=0.23  Score=52.46  Aligned_cols=38  Identities=34%  Similarity=0.433  Sum_probs=32.9

Q ss_pred             CcccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (546)
Q Consensus       109 ~~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~  146 (546)
                      ..||||||| |-+=+.+|++.+|.|.+|+-+|++++-+.
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg   45 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG   45 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence            379999999 54688889999999999999999998653

>TIGR02730 carot_isom carotene isomerase

Probab=91.45  E-value=0.73  Score=50.80  Aligned_cols=35  Identities=40%  Similarity=0.729  Sum_probs=31.7

Q ss_pred             ccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       111 yDVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      |||||||||+ |+++|+.||++|++|+|+||+..++
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G   36 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG   36 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            7999999875 8889999999999999999998765

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=90.99  E-value=0.5  Score=48.30  Aligned_cols=30  Identities=27%  Similarity=0.462  Sum_probs=26.9

Q ss_pred             EEEEcc-h-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG-T-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG-g-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.|| | +|+-++..|.++|++|+|+|...
T Consensus         3 iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~   34 (329)
T COG1087           3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLS   34 (329)
T ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Confidence            789996 7 79999999999999999999554

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=90.94  E-value=0.29  Score=45.40  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=26.7

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |.|+||| .|.++|..|+++|++|.|..+.+
T Consensus         2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            7899977 58899999999999999998764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR02734 crtI_fam phytoene desaturase

Probab=90.84  E-value=1  Score=49.59  Aligned_cols=33  Identities=30%  Similarity=0.559  Sum_probs=29.6

Q ss_pred             EEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          113 VIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       113 VIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      |||||||+ |+++|+.||++|++|+|+|++..++
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G   34 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG   34 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence            68999775 8889999999999999999998765

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=90.68  E-value=21  Score=38.60  Aligned_cols=57  Identities=18%  Similarity=0.201  Sum_probs=41.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC----CCeEEEEcCCCCCCC-c------c-------cc--cCCHHHHHHHHHcCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK----GLRVAIVERNTLKGR-E------Q-------EW--NISRKELLELVESGIL  166 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~----G~rVlLlEr~~~~~~-~------r-------~~--~Is~~~l~~L~~lGl~  166 (546)
                      +.||+||||| +|+++|..|+++    |++|+|+|+..-.+. .      .       .|  .-.++.++.+.++|+.
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~   79 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLE   79 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCC
Confidence            4799999976 599999999998    999999998875431 0      0       01  1224467788888874

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=90.57  E-value=0.32  Score=46.25  Aligned_cols=30  Identities=30%  Similarity=0.435  Sum_probs=25.5

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |.|+|+| +|...|..+|++|++|.++|+.+
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            7899955 79999999999999999999864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.60  E-value=0.42  Score=52.10  Aligned_cols=33  Identities=33%  Similarity=0.430  Sum_probs=29.4

Q ss_pred             EEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       113 VIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      |.|+| |+.|.++|..|+++|++|.+.|+...++
T Consensus         3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~   36 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE   36 (459)
T ss_pred             EEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence            78999 7789999999999999999999887654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=89.31  E-value=0.51  Score=45.72  Aligned_cols=32  Identities=31%  Similarity=0.623  Sum_probs=28.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      ..|+|+| ||+|+..|..|++.|+ ++.|+|...
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            5699999 7899999999999999 699999774

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=88.95  E-value=2.5  Score=44.76  Aligned_cols=102  Identities=17%  Similarity=0.256  Sum_probs=69.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      -.+|+||| +|+-++..-.+.|-+|+++|-......                  .                         
T Consensus       213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~------------------~-------------------------  249 (506)
T KOG1335|consen  213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG------------------V-------------------------  249 (506)
T ss_pred             eEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc------------------c-------------------------
Confidence            47788866 699999999999999999984332110                  0                         


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcC---C--cEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~---g--~~i~ArlVV~ADG~~S~vr  264 (546)
                                 +|++ +-.....-+...|.++..+|+|+.+..+.| .+.|++.+   +  ++++||++..|-|++ |.-
T Consensus       250 -----------mD~E-isk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr-P~t  316 (506)
T KOG1335|consen  250 -----------MDGE-ISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR-PFT  316 (506)
T ss_pred             -----------cCHH-HHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc-ccc
Confidence                       1111 111222223346899999999999999888 56666653   3  389999999999987 555


Q ss_pred             HHhcC
Q 009027          265 KQIRS  269 (546)
Q Consensus       265 ~ql~~  269 (546)
                      +.|++
T Consensus       317 ~GLgl  321 (506)
T KOG1335|consen  317 EGLGL  321 (506)
T ss_pred             cCCCh
Confidence            55543

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=88.77  E-value=0.75  Score=45.58  Aligned_cols=50  Identities=26%  Similarity=0.393  Sum_probs=37.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESG  164 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lG  164 (546)
                      .-|+||| ||+|+.++-+|||.|+ +..|||.....-    .|+.+..-..+...|
T Consensus        31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v----TN~NRQi~A~~~~iG   82 (263)
T COG1179          31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV----TNTNRQIHALLGDIG   82 (263)
T ss_pred             CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc----cccchhhHhhhhhcc
Confidence            4599999 9999999999999999 788999876532    245554444444444

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=88.41  E-value=3.6  Score=48.01  Aligned_cols=31  Identities=32%  Similarity=0.339  Sum_probs=26.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~r-VlLlEr~~  142 (546)
                      .|+||||| .|+-+|..+.+.|.+ |.|+++..
T Consensus       572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            69999976 588899999999997 99998764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=88.37  E-value=0.61  Score=45.18  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=29.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      .-|+|+| ||+|+.+|..|++.|. ++.|+|....
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV   56 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence            5699999 7899999999999998 8999997753

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=88.01  E-value=0.57  Score=48.37  Aligned_cols=31  Identities=32%  Similarity=0.491  Sum_probs=28.0

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|+| |++|+..|+.|++.|.+|.++.|..
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            599999 5679999999999999999999863

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=87.95  E-value=0.25  Score=52.11  Aligned_cols=36  Identities=39%  Similarity=0.618  Sum_probs=32.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .|||||.| |..=+.+++.|+..|-+|+.+||++.-+
T Consensus         4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG   40 (440)
T KOG1439|consen    4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYG   40 (440)
T ss_pred             ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCC
Confidence            49999999 6678999999999999999999997643

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=87.94  E-value=0.57  Score=49.71  Aligned_cols=67  Identities=21%  Similarity=0.229  Sum_probs=57.1

Q ss_pred             eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC--ChHHHHHhc
Q 009027          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN--FSPVVKQIR  268 (546)
Q Consensus       202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~--~S~vr~ql~  268 (546)
                      |-++.|-++-.++.++.|++|+.+..|.++......+++.++||.+++.++||.|.|-  ||-++..-+
T Consensus       390 iLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sg  458 (659)
T KOG1346|consen  390 ILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASG  458 (659)
T ss_pred             hhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccc
Confidence            3456677788888888999999999999999999999999999999999999999994  566765433

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=87.91  E-value=0.46  Score=48.18  Aligned_cols=31  Identities=29%  Similarity=0.371  Sum_probs=25.2

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++|+| ||+|=++     |..||++|.||+|||-.+.
T Consensus         4 i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq   40 (279)
T PRK13230          4 FCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK   40 (279)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence            56779 8887664     7788999999999997664

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=87.52  E-value=0.85  Score=49.63  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=29.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      -+|+||||| .|+-+|..|++.|.+|.|+|+.+.
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  204 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR  204 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence            479999975 699999999999999999998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=87.03  E-value=1  Score=40.79  Aligned_cols=31  Identities=32%  Similarity=0.629  Sum_probs=27.7

Q ss_pred             EEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      |+|+| |++|+.+|..|++.|+ ++.++|....
T Consensus         2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v   34 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV   34 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence            78999 7899999999999999 6999997753

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=86.92  E-value=5.6  Score=45.62  Aligned_cols=31  Identities=35%  Similarity=0.359  Sum_probs=25.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      .|+||||| .|.-+|..+.+.|. +|.|+++..
T Consensus       325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            69999976 58889999999987 599998664

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=86.86  E-value=0.81  Score=48.05  Aligned_cols=33  Identities=33%  Similarity=0.577  Sum_probs=29.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      .-|+||| ||+|+.+|..|++.|+ ++.|+|+...
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v   59 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV   59 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            4599999 7899999999999999 8899998764

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=86.74  E-value=0.68  Score=44.28  Aligned_cols=30  Identities=33%  Similarity=0.399  Sum_probs=23.9

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |.|+|-| +|+.+|+.||++|++|+.+|..+
T Consensus         3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            7899955 89999999999999999999664

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=86.73  E-value=0.82  Score=48.03  Aligned_cols=32  Identities=38%  Similarity=0.576  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      .-|+||| ||+|+.+|..|++.|+ ++.|+|...
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            4699999 7899999999999999 999999864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=86.61  E-value=0.96  Score=46.78  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=28.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -.|.|+| |.+|++.|..|+++|++|.++.|..
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            4699999 5579999999999999999999864

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.51  E-value=0.77  Score=47.39  Aligned_cols=31  Identities=19%  Similarity=0.302  Sum_probs=28.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|+|+| .|..+|..|+++|++|.++|+.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            59999965 69999999999999999999875

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=86.48  E-value=1.3  Score=46.26  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       210 ~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      .+...+...|.+|+.+++|++|..+++++.|.+.+|++++||.||.|....
T Consensus       214 ~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  264 (450)
T PF01593_consen  214 ALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS  264 (450)
T ss_dssp             HHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred             HHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence            333344445779999999999999999999999999999999999887654

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=86.20  E-value=1.9  Score=47.64  Aligned_cols=36  Identities=39%  Similarity=0.672  Sum_probs=33.1

Q ss_pred             cccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .|||||||||. |+++|+.||++|++|+|+||+..++
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G   39 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG   39 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence            69999999875 8899999999999999999998775

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=86.08  E-value=0.63  Score=47.08  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=25.0

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      +.|+| ||+|-++     |+.||++|.||+|||-.+..
T Consensus         4 iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~   41 (273)
T PRK13232          4 IAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKA   41 (273)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccc
Confidence            44558 8887765     77889999999999976643

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=86.02  E-value=1.9  Score=44.12  Aligned_cols=110  Identities=15%  Similarity=0.279  Sum_probs=61.7

Q ss_pred             EEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       113 VIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      ||||| ||+|+-.+-.|+|.|. |..++|-.+..-.    .+.+.+...|.+.|.-...-+...+ +++ ..+++.+...
T Consensus        77 VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSls----SLNrHs~Atl~DVG~PK~~clkkh~-ski-aPw~eIdar~  150 (430)
T KOG2018|consen   77 VVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLS----SLNRHSCATLADVGTPKVMCLKKHF-SKI-APWCEIDARN  150 (430)
T ss_pred             EEEEecCchhHHHHHHHHHhcCceEEEechhhccHh----hhhhhhhhhHhhcCCchHHHHHHHH-Hhh-CccceecHHH
Confidence            88889 7899999999999998 6778875442111    2556677788888853211111111 111 1222222211


Q ss_pred             cccccc--------cccce---eCHHHHHHHHHHHHHhcCCEEEeCceE
Q 009027          191 EIWVED--------ILNLG---VSPAKLIEIVKKRFISLGGVIFEGYSV  228 (546)
Q Consensus       191 ~l~~~~--------~l~~~---V~~~~L~~~L~~~a~~~G~~v~~~t~v  228 (546)
                      .+|.+.        ...+.   +|+-...--|++.|..+|..++..+.+
T Consensus       151 ~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Ga  199 (430)
T KOG2018|consen  151 MLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGA  199 (430)
T ss_pred             hhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCc
Confidence            111110        01233   455555556788888889888766544

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=85.72  E-value=1.1  Score=42.39  Aligned_cols=31  Identities=32%  Similarity=0.495  Sum_probs=27.6

Q ss_pred             EEEEc-chHHHHHHHHHHhCCCe-EEEEcCCCC
Q 009027          113 VIVCG-GTLGIFIATALSFKGLR-VAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~~Aa~LA~~G~r-VlLlEr~~~  143 (546)
                      |+|+| ||+|+..|..|++.|+. +.++|....
T Consensus         2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   34 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV   34 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            78999 78999999999999995 999997753

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.69  E-value=0.9  Score=46.52  Aligned_cols=32  Identities=28%  Similarity=0.296  Sum_probs=28.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      -|.|||+| +|.-.|..++++|++|.++|+.+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            58999954 799999999999999999998764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=85.48  E-value=1.1  Score=40.28  Aligned_cols=33  Identities=24%  Similarity=0.541  Sum_probs=28.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      .-|+|+| |++|+.+|..|++.|+ ++.|+|....
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            3589999 6799999999999999 6899997754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.46  E-value=0.95  Score=44.67  Aligned_cols=56  Identities=23%  Similarity=0.254  Sum_probs=38.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC---c-----ccccCCHHHHHHHHHcCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR---E-----QEWNISRKELLELVESGILV  167 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~---~-----r~~~Is~~~l~~L~~lGl~~  167 (546)
                      .++|+|+| .|...|-.|++.|+.|+++|+.+..-.   .     .....+......|.++|+-+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~   66 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDD   66 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCc
Confidence            58999965 899999999999999999998864311   0     11112223345677778753

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.44  E-value=1  Score=49.50  Aligned_cols=31  Identities=39%  Similarity=0.536  Sum_probs=27.6

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+|+| |+.|+.+|..|+++|++|.++|+..
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            699999 5689999999999999999999764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=85.37  E-value=1  Score=45.96  Aligned_cols=30  Identities=27%  Similarity=0.485  Sum_probs=26.8

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |.|+|+ .+|++.|..|+++|++|.+++|..
T Consensus         3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          3 IAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            889995 579999999999999999999853

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=85.37  E-value=2.1  Score=45.31  Aligned_cols=55  Identities=22%  Similarity=0.196  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc-CCcEEEcCEEEEecCCC
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNF  260 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-~g~~i~ArlVV~ADG~~  260 (546)
                      .+.+.|.+.+.+.|++|+.+++|++|..+++++++.+. +|+++.||.||.|.-..
T Consensus       198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~  253 (419)
T TIGR03467       198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR  253 (419)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence            34455777787889999999999999998888766543 67789999999986544

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=85.27  E-value=1.1  Score=45.59  Aligned_cols=33  Identities=24%  Similarity=0.485  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCC-CeEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G-~rVlLlEr~~~  143 (546)
                      .-|+|+| ||+|+.+|-.||+.| -++.|+|....
T Consensus        31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            4699999 789999999999999 48999996643

>PLN02676 polyamine oxidase

Probab=85.20  E-value=2.2  Score=47.15  Aligned_cols=35  Identities=31%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~~~  144 (546)
                      .+|||||||| .|+++|..|+++|+ +|+|+|++...
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~   62 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI   62 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence            6899999976 59999999999998 59999987654

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.91  E-value=1.1  Score=46.79  Aligned_cols=31  Identities=16%  Similarity=0.130  Sum_probs=27.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|.|||+| +|...|..++.+|++|.++|+.+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            49999955 79999999999999999999875

>PRK08223 hypothetical protein; Validated

Probab=84.85  E-value=1  Score=46.09  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=28.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      .-|+||| ||+|+.+|..||+.|+ ++.|+|....
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V   62 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF   62 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            4699999 7899999999999999 6778886643

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=84.78  E-value=1.4  Score=39.68  Aligned_cols=32  Identities=34%  Similarity=0.482  Sum_probs=28.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT  142 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~r-VlLlEr~~  142 (546)
                      --|+|+| ||+|.+++..|+..|.+ |.|+-|..
T Consensus        13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            4699999 78999999999999998 99998763

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=84.59  E-value=1.1  Score=45.79  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=25.8

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcC
Q 009027          113 VIVCGG-TLGIFIATALSFKGLRVAIVER  140 (546)
Q Consensus       113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr  140 (546)
                      |.|+|+ .+|++.|..|+++|++|.+++|
T Consensus         3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            889995 5799999999999999999997

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.37  E-value=1.2  Score=45.52  Aligned_cols=31  Identities=35%  Similarity=0.527  Sum_probs=27.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|.|+|+| .|..+|..|+++|++|.++|+.+
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            48999965 69999999999999999999764

>TIGR01287 nifH nitrogenase iron protein

Probab=84.35  E-value=0.89  Score=45.93  Aligned_cols=32  Identities=34%  Similarity=0.468  Sum_probs=25.1

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      |.|.| ||+|-+     +|..||++|+||+|||-.+..
T Consensus         3 ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~   40 (275)
T TIGR01287         3 IAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKA   40 (275)
T ss_pred             eEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            67889 887665     466788999999999976543

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.03  E-value=1.2  Score=45.58  Aligned_cols=31  Identities=23%  Similarity=0.458  Sum_probs=27.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|||+| +|...|..|+++|++|.++|+.+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            38999965 69999999999999999999875

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=83.97  E-value=0.97  Score=45.71  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=24.6

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      |.|+| ||+|=++     |++||+.|.||+|||-.+..
T Consensus         4 iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~   41 (274)
T PRK13235          4 VAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKA   41 (274)
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            45668 7877654     77889999999999966543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.55  E-value=1.3  Score=45.31  Aligned_cols=31  Identities=26%  Similarity=0.300  Sum_probs=27.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|||+| .|..+|..|+++|++|.++|+.+
T Consensus         6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            48999955 79999999999999999999764

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=83.53  E-value=1.6  Score=43.58  Aligned_cols=33  Identities=24%  Similarity=0.483  Sum_probs=28.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      ..|+|+| ||+|+.+|..|++.|. ++.++|....
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            5799999 7899999999999998 6778886653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=83.31  E-value=0.99  Score=45.39  Aligned_cols=31  Identities=26%  Similarity=0.422  Sum_probs=24.2

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.| ||.|=+     +|..||++|.||+|||-.+.
T Consensus         3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq   39 (267)
T cd02032           3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK   39 (267)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            56778 777654     47788899999999997753

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=83.28  E-value=1.3  Score=45.18  Aligned_cols=31  Identities=29%  Similarity=0.356  Sum_probs=27.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|.|+|+| +|...|..|+++|++|.++|+.+
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            48999955 79999999999999999999775

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=83.07  E-value=1.1  Score=45.15  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=23.7

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |.|.| ||+|=+     +|..||++|.||+|||-.+.
T Consensus         3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q   39 (268)
T TIGR01281         3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK   39 (268)
T ss_pred             EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence            45667 787665     46678899999999997654

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=83.02  E-value=1.2  Score=46.72  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          120 LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       120 ~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +|+++|..|+++|++|+|+|++.-++
T Consensus         2 aGL~aA~~L~~~G~~v~vlEa~~r~G   27 (450)
T PF01593_consen    2 AGLAAAYYLAKAGYDVTVLEASDRVG   27 (450)
T ss_dssp             HHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred             hHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence            59999999999999999999887654

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=82.99  E-value=1  Score=45.03  Aligned_cols=31  Identities=29%  Similarity=0.460  Sum_probs=24.1

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++|+| ||+|-+     +|..||++|.||+|||-.+.
T Consensus         4 iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq   40 (270)
T cd02040           4 IAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK   40 (270)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence            56668 887665     46678899999999997664

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=82.91  E-value=1.7  Score=45.91  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=29.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHh--CCCeEEEEcCCCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSF--KGLRVAIVERNTLKG  145 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~--~G~rVlLlEr~~~~~  145 (546)
                      .-|+||| ||+|.-+|..|-+  -++.|.++|+.+.|.
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF   58 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF   58 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence            4799999 6789999997765  389999999998774

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=82.80  E-value=1.5  Score=51.96  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=31.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .-|.||| ||+|+++|..|-+.|+-|+|.||..-++
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence            5799999 7899999999999999999999987655

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=82.77  E-value=1.8  Score=37.34  Aligned_cols=30  Identities=33%  Similarity=0.648  Sum_probs=26.8

Q ss_pred             EEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ||||| |..|..+|-.|.+.+.+|+++|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            68999 5689999999999888999999875

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08328 hypothetical protein; Provisional

Probab=82.55  E-value=1.9  Score=42.72  Aligned_cols=33  Identities=33%  Similarity=0.506  Sum_probs=28.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      .-|+|+| ||+|+.+|..|++.|. ++.|+|....
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            4699999 7899999999999998 5778886643

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=82.55  E-value=1.7  Score=42.40  Aligned_cols=32  Identities=34%  Similarity=0.480  Sum_probs=28.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT  142 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~r-VlLlEr~~  142 (546)
                      .-|+|+| ||+|+.+|..|++.|+. +.++|...
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            5699999 78999999999999996 89999764

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=82.36  E-value=1.3  Score=43.06  Aligned_cols=31  Identities=26%  Similarity=0.391  Sum_probs=24.0

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |.|.| ||.|-+     +|..||++|.||+|||-.+.
T Consensus         3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q   39 (212)
T cd02117           3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK   39 (212)
T ss_pred             EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            56778 877665     46678899999999996654

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=82.18  E-value=13  Score=42.62  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=25.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      .|+||||| .|.-+|..+.+.|. +|.++.+..
T Consensus       470 ~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            69999976 58888888888887 699888663

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=81.92  E-value=1.8  Score=43.23  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=27.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCC-----------CeEEEEcCCC
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKG-----------LRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G-----------~rVlLlEr~~  142 (546)
                      ...|+||| ||+|+.++-.||+.|           .++.|+|...
T Consensus        11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            56899999 789999999999874           3889998664

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=81.63  E-value=15  Score=40.35  Aligned_cols=32  Identities=22%  Similarity=0.166  Sum_probs=26.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      -.|+|+||| .|+-+|..+.+.|. +|.|+++..
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            369999976 68888888888896 699998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=81.60  E-value=2  Score=41.67  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=26.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      --|+||||| +|...|..|.+.|.+|+|+++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            469999976 7999999999999999999753

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=81.59  E-value=1.7  Score=45.33  Aligned_cols=30  Identities=23%  Similarity=0.536  Sum_probs=27.0

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      .|.|+|. .+|+..|..|+++|++|.+++|.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            4899995 57999999999999999999974

>PRK04148 hypothetical protein; Provisional

Probab=81.35  E-value=1.4  Score=39.88  Aligned_cols=31  Identities=19%  Similarity=0.288  Sum_probs=27.5

Q ss_pred             cEEEEcchHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|++||-|.|...|..|++.|++|+.+|.++
T Consensus        19 kileIG~GfG~~vA~~L~~~G~~ViaIDi~~   49 (134)
T PRK04148         19 KIVELGIGFYFKVAKKLKESGFDVIVIDINE   49 (134)
T ss_pred             EEEEEEecCCHHHHHHHHHCCCEEEEEECCH
Confidence            5999996699889999999999999999665

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=81.21  E-value=2.8  Score=42.23  Aligned_cols=32  Identities=25%  Similarity=0.525  Sum_probs=27.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCC
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~  141 (546)
                      .+-|.||| ||+|+.+|-.|.|.|+ |.+|+|=.
T Consensus        82 ~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYD  115 (422)
T KOG2336|consen   82 EFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD  115 (422)
T ss_pred             hheeEEEecCchhHHHHHHHHhcCcceEEEeecc
Confidence            47799999 9999999999999999 67777743

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=81.09  E-value=1.4  Score=45.23  Aligned_cols=30  Identities=27%  Similarity=0.318  Sum_probs=23.5

Q ss_pred             EEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 009027          114 IVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       114 IIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~  143 (546)
                      .|.| ||+|-++     |+.||+.|.||+|||-.+.
T Consensus         8 ai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q   43 (295)
T PRK13234          8 AFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK   43 (295)
T ss_pred             EEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence            3447 7887765     7788999999999996654

>PRK13236 nitrogenase reductase; Reviewed

Probab=80.78  E-value=1.4  Score=45.35  Aligned_cols=32  Identities=25%  Similarity=0.357  Sum_probs=24.4

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      +.+.| ||+|-++     |+.||++|.||+|+|-.+..
T Consensus         9 ~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~   46 (296)
T PRK13236          9 IAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKA   46 (296)
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            44566 7776654     78899999999999976643

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=80.78  E-value=1.4  Score=44.35  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=23.4

Q ss_pred             EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |.|+| ||+|-++     |..||++|.||+|||-.+.
T Consensus         5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq   41 (270)
T PRK13185          5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK   41 (270)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            44557 7776654     7788899999999996653

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=80.70  E-value=2.1  Score=42.45  Aligned_cols=33  Identities=27%  Similarity=0.558  Sum_probs=28.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      .-|+|+| ||+|+.+|-.|++.|. +..|+|....
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V   46 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV   46 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            4699999 8899999999999999 7889986653

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=80.70  E-value=2.2  Score=43.66  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=28.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      -.|+|+| ||+|.++|..|++.|. +|.|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            4699999 7899999999999998 799999874

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=80.69  E-value=2.3  Score=39.47  Aligned_cols=29  Identities=28%  Similarity=0.331  Sum_probs=25.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEc
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVE  139 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlE  139 (546)
                      --|+||||| +|.--|..|.+.|.+|.||+
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            359999976 79999999999999999995

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.68  E-value=1.8  Score=43.91  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=27.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|||+| +|...|..|+++|++|.++|+++
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            59999955 79999999999999999999775

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.65  E-value=2  Score=46.54  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=28.1

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -.|+|+|+ ++|..+|..|+++|++|.++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            35899995 689999999999999999999864

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=80.61  E-value=1.5  Score=45.06  Aligned_cols=31  Identities=29%  Similarity=0.429  Sum_probs=24.9

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++|.| ||+|=+     +|+.||+.|.||+|||-.+.
T Consensus         3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ   39 (290)
T CHL00072          3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK   39 (290)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            67888 876544     57788999999999997654

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=80.16  E-value=2.5  Score=41.69  Aligned_cols=32  Identities=31%  Similarity=0.522  Sum_probs=28.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      .-|+|+| ||+|+.+|..|++.|. ++.|+|...
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            4699999 7899999999999999 778888664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	546
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3atr_A	453	Conserved archaeal protein; saturating double bond	1e-05
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	3e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 6e-10
 Identities = 88/592 (14%), Positives = 171/592 (28%), Gaps = 185/592 (31%)

Query: 7   RHFNGVSHF-PSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG------ 59
           R +N    F    V   +   +    L           R  +++ + G V G+G      
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLEL--------RPAKNVLIDG-VLGSGKTWVAL 168

Query: 60  -GAYSYDALKRLD-QI-WSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVC 116
               SY    ++D +I W N+ +  + +  ++ +      L  Q D +            
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK----LLYQIDPN------------ 212

Query: 117 GGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDI-DEAT 175
                 + + +     +++ I        R  +       LL      +L   ++ +   
Sbjct: 213 ------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL------VL--LNVQNAKA 258

Query: 176 ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE 235
              FN   C    K       IL            +  RF  +   +    + + I    
Sbjct: 259 WNAFN-LSC----K-------IL------------LTTRFKQVTDFL-SAATTTHISLDH 293

Query: 236 NAAVLLLAEGK-ILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDN-STS 293
           ++  L   E K +L  +L      +    V        P      +   A   +D  +T 
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTT----NP----RRLSIIAESIRDGLATW 344

Query: 294 D------------VIYSSSSVKKVGDSEVQ-LFWE--AFPAGSGPLDRTTYMFTYIDPQA 338
           D            +I   SS+  +  +E + +F     FP              +I    
Sbjct: 345 DNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPS-----------AHI---- 387

Query: 339 GSPKLEELLERYWDLMPEY-QGVTLDNLEIQRVI--------YGIFPTYRDSPLPA---- 385
             P    LL   W  + +    V ++ L    ++          I   Y +  +      
Sbjct: 388 --P--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 386 --------AFNRILQFGDASGIQSPVSFGGFGS-LTRHLGRLSTGVYEAVRGDFVDSYSL 436
                    +N    F D+  +  P     F S +  HL             + +  + +
Sbjct: 444 ALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGHHL-------KNIEHPERMTLFRM 495

Query: 437 SLLNPYMKLGDPVLRPFLQDVIKF--------GPLAKTLGLVMLNKPQIIPS--IFKQVG 486
             L+          R FL+  I+         G +  TL  +   KP I  +   +++  
Sbjct: 496 VFLD---------FR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER-- 543

Query: 487 IPVLVDWSGHFFM-LGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWK 537
              LV+    F   +    + S + D +  +L+             + EA K
Sbjct: 544 ---LVNAILDFLPKIEENLICSKYTDLLRIALMA---EDEAI----FEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 79/583 (13%), Positives = 165/583 (28%), Gaps = 204/583 (34%)

Query: 3   FLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAY 62
           F+       V   P  +  K ++    I +   A   S T R+  ++    E        
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAV--SGTLRLFWTLLSKQE-------- 76

Query: 63  SYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGI 122
                             + VQ+ +++V+  N                            
Sbjct: 77  ------------------EMVQKFVEEVLRINYK-------------------------- 92

Query: 123 FIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKE--------LLEL-VESG 164
           F+ + +  +  + +++ R  ++ R++ +N         +SR +        LLEL     
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 165 ILVEDDI-------------DEATATKFNPNRCGFEGKGEI-WVEDILNLG--VSPAKLI 208
           +L++  +                   K +          +I W    LNL    SP  ++
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMD---------FKIFW----LNLKNCNSPETVL 199

Query: 209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268
           E+++K    +           +  +  + +  +      L  H I   +         ++
Sbjct: 200 EMLQKLLYQI---------DPNWTSRSDHSSNI-----KLRIHSIQAELRRL------LK 239

Query: 269 SGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328
           S    +  CL+V         N              V +++    W AF      L  TT
Sbjct: 240 SKPYEN--CLLV-------LLN--------------VQNAKA---WNAFNLSCKIL-LTT 272

Query: 329 YMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTY---RDSPLPA 385
                 D       L      +  L      +T D ++       +   Y   R   LP 
Sbjct: 273 RFKQVTD------FLSAATTTHISLDHHSMTLTPDEVK------SLLLKYLDCRPQDLPR 320

Query: 386 AFNRILQFGDASGIQSPVSFGGFGSLTR-HLGRLSTGVYEAVRGDFVD---SYSLSLLNP 441
                    +     +P          R  L       ++ V  D +      SL++L P
Sbjct: 321 ---------EVLTT-NPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLEP 368

Query: 442 ------YMKLGDPVLRPFLQDV-IKFGPLAKTLGLVMLN-KPQIIPSIFKQVGIPVLVDW 493
                 + +L   V   F     I   P    L L+  +     +  +  ++    LV+ 
Sbjct: 369 AEYRKMFDRLS--V---FPPSAHI---P-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 494 SGHFFMLGYYTLLSTFADPVI------RSLLNAFPPRMKYEWN 530
                 +   ++       +       RS+++ +     ++ +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 50/317 (15%), Positives = 97/317 (30%), Gaps = 42/317 (13%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-------ISRKELLELVE 162
           +DV++ G G  G   A  LS +GL++ +V+                   +S+    +L  
Sbjct: 7   YDVLIIGGGFAGSSAAYQLSRRGLKILLVDS----KPWNRIGDKPCGDAVSKAHFDKLGM 62

Query: 163 SGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVI 222
                     E    K N  +        +W  +     ++     + V K     G  I
Sbjct: 63  -----PYPKGEELENKINGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEI 117

Query: 223 FEGYSVSSICTYENAAVLLLA------EGKILSSHLIIDAMGNFSPVVKQI--RSGRKPD 274
           ++  +       +      +       E   + S ++++A G       ++        D
Sbjct: 118 WDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELPITED 177

Query: 275 GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG---PLDRTTYMF 331
                     R         V+ +   ++      + +  E  P G     P  +     
Sbjct: 178 LDDKDADVAYRE--------VLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNV 229

Query: 332 -TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRI 390
              I    G P + E  ++Y D         +D  ++      + P  R      A+N I
Sbjct: 230 GLGIQGGMGYPSIHEYYKKYLDKYAPD----VDKSKLLVKGGALVP-TRRPLYTMAWNGI 284

Query: 391 LQFGDASGIQSPVSFGG 407
           +  GD+    +PV  GG
Sbjct: 285 IVIGDSGFTVNPVHGGG 301

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 60/349 (17%), Positives = 106/349 (30%), Gaps = 63/349 (18%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNISR--KELLELVESG 164
            FD+IV G G  G  +A+ ++ +G RV ++ER     R Q  E  +      +  +    
Sbjct: 7   VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAF-PRHQIGESLLPATVHGICAM---- 61

Query: 165 ILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSP---------AKLIEIVKKRF 215
           + + D++  A           +  + E W          P         A+  +++ +  
Sbjct: 62  LGLTDEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNS 121

Query: 216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGK-----ILSSHLIIDAMGNFSPVVKQIRSG 270
              G  + E + V  +      AV +          +  +  I+DA GN + V + +   
Sbjct: 122 ERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGER 181

Query: 271 RKPDGVCLVVGSCARG-FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG---PLDR 326
                          G F++                   +  +   AF  G     PL  
Sbjct: 182 VYSRF---FQNVALYGYFENGKRLP-----------APRQGNILSAAFQDGWFWYIPLSD 227

Query: 327 TTYMFTYIDPQAGSPK----LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSP 382
           T      +  +  +       E  L RY D  P  +        +    YG     +D  
Sbjct: 228 TLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAPATRVTTGDYGEIRIRKDYS 287

Query: 383 L---PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 428
                   N +   GDA+    PV               S+GV+ A   
Sbjct: 288 YCNTSFWKNGMALVGDAACFVDPVF--------------SSGVHLATYS 322

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 47/345 (13%), Positives = 93/345 (26%), Gaps = 63/345 (18%)

Query: 111 FDVIVCGG-----TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKE--------- 156
            DV+V G            A+ ++  G +V IVE+             R           
Sbjct: 6   VDVLVIGAGPAGTVA----ASLVNKSGFKVKIVEKQKF---------PRFVIGESLLPRC 52

Query: 157 LLELVESGILVEDDIDEATATKFNPNR-CGFEGKGEIWVEDILNLGVSPAKLI------E 209
           +  L E+G L  D +      +    +    +   +    D  + G +    +      +
Sbjct: 53  MEHLDEAGFL--DAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDK 110

Query: 210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMGNFSPVVK 265
            +       G  +     V+ I  +   +V  +       + + +  IIDA G    + +
Sbjct: 111 TLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPR 170

Query: 266 QIRSGRKPDGVCLVVGSCA--RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGP 323
                 KP G           +  K    ++     + +  V        W   P  +G 
Sbjct: 171 MFGL-DKPSGFESRRTLFTHIKDVKRPVAAE--MEGNRITAVVHKPKVWIW-VIPFSNG- 225

Query: 324 LDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL 383
                ++         +   EE +                + E       I   Y  S  
Sbjct: 226 NTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAER-FKSEEFLFEPRTIEG-YAISAS 283

Query: 384 PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 428
               +  +  G+A+    P+               S+G   A+  
Sbjct: 284 KLYGDGFVLTGNATEFLDPIF--------------SSGATFAMES 314

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	546
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.97
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.97
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.97
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.97
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.96
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.96
3atr_A	453	Conserved archaeal protein; saturating double bond	99.96
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.95
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.95
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.95
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.95
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.95
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.94
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.94
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.94
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.94
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.94
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.93
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.93
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.91
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.91
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.89
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.89
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.89
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.87
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.84
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.79
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.68
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.66
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.5
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.44
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.42
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.37
3dme_A	369	Conserved exported protein; structural genomics, P	99.31
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.27
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.27
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.27
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.25
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.25
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.2
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.18
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.17
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.16
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.16
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.15
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.14
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.13
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.11
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.11
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.1
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.03
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.02
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.01
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.97
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.97
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.97
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.96
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.95
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.91
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.91
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.89
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.89
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.89
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.88
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.88
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.87
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.84
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.82
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.8
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.79
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.77
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.77
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.76
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.76
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.76
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.76
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.76
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.75
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.74
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.74
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.71
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.71
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.71
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.7
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.7
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.66
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.66
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.64
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.63
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.63
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.62
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.62
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.61
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.61
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.6
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.59
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.55
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.52
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.52
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.51
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.51
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.5
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.44
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.43
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.43
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.4
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.39
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.37
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.35
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.35
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.32
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.32
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.3
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.23
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.22
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.22
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.15
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.14
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.11
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.1
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.04
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.01
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.98
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.98
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.97
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.96
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.95
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.94
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.92
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.92
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.88
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.86
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.85
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.85
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.84
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.84
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.82
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.81
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.8
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.8
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.77
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.75
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.73
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.73
4dna_A	463	Probable glutathione reductase; structural genomic	97.71
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.71
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.69
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.69
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.68
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.67
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.67
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.67
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.66
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.64
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.64
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.64
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.63
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.62
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.62
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.62
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.61
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.61
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.61
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.58
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.57
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.55
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.55
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.54
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.53
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.53
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.51
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.5
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.48
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.48
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.48
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.46
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.43
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.42
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.42
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.42
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.39
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.38
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.37
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.36
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.36
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.34
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.31
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.3
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.3
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.29
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.29
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.28
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.28
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.27
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.26
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.25
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.25
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.23
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.23
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.22
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.21
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.21
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.17
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.15
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.13
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.13
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.11
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.1
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.09
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.05
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.03
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.03
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.02
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.01
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.98
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	96.97
4dna_A	463	Probable glutathione reductase; structural genomic	96.95
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.95
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.9
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.89
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.86
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.83
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	96.82
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.81
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.79
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.75
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	96.74
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.73
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	96.71
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.71
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.7
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.67
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.65
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	96.65
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.61
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.6
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.6
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.59
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.59
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	96.55
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.54
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.43
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.43
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.43
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.38
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.37
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.31
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.29
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.13
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.12
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.1
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.1
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.07
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.06
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.06
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	95.99
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	95.97
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.97
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	95.94
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	95.92
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	95.84
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	95.78
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.74
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	95.7
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.69
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.56
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	95.53
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.43
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.35
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.25
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.19
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	95.15
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.14
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.12
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.93
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	94.24
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.1
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	93.93
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	93.58
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	93.38
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	93.19
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	92.62
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	92.51
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.29
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.1
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	92.0
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	91.82
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.55
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.1
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	90.74
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	90.38
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	90.3
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	89.95
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.51
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	89.48
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	89.37
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	88.98
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	88.96
1id1_A	153	Putative potassium channel protein; RCK domain, E.	88.95
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	88.73
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.36
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	87.9
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	87.28
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	87.1
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	86.82
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	86.82
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	86.77
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	86.53
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	86.39
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	85.33
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	85.3
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	85.23
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	84.92
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	84.71
3fwy_A	314	Light-independent protochlorophyllide reductase I	84.69
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	84.63
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	84.48
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	84.39
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	84.28
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	84.28
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	83.78
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	83.77
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	83.76
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	83.76
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	83.74
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	83.68
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	83.62
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	83.53
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	83.37
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	83.35
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	83.29
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	83.08
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	82.78
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	82.76
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	82.74
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	82.74
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	82.68
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	82.64
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	82.55
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	82.45
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	82.43
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	82.41
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	82.41
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	82.4
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	82.39
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	82.32
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	82.32
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	82.24
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	82.21
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	82.17
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	82.11
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	81.98
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	81.96
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	81.89
4dqx_A	277	Probable oxidoreductase protein; structural genomi	81.86
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	81.83
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	81.82
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	81.82
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	81.82
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	81.81
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	81.71
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	81.65
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	81.53
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	81.5
3imf_A	257	Short chain dehydrogenase; structural genomics, in	81.48
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	81.48
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	81.47
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	81.43
4g65_A	461	TRK system potassium uptake protein TRKA; structur	81.41
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	81.35
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	81.32
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	81.31
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	81.31
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	81.28
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	81.25
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	81.13
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	81.1
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	81.1
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	81.08
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	81.06
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	81.0
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	81.0
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	80.98
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	80.98
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	80.92
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	80.81
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	80.72
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	80.72
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	80.68
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	80.66
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	80.65
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	80.65
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	80.62
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	80.58
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	80.53
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	80.51
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	80.49
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	80.47
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	80.47
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	80.47
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	80.42
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	80.41
3rih_A	293	Short chain dehydrogenase or reductase; structural	80.41
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	80.4
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	80.39
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	80.36
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	80.36
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	80.35
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	80.35
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	80.3
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	80.27
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	80.24
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	80.21
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	80.16
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	80.15
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	80.11
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	80.11
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	80.11
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	80.06
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	80.04
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	80.03

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.8e-32  Score=285.70  Aligned_cols=309  Identities=16%  Similarity=0.180  Sum_probs=203.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-c-cccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-Q-EWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r-~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      +|||||||| ++|+++|+.||++|++|+|+||++.++.+ + ...|++..   |.++|+....+.   +.......++..
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~---l~~l~~~~~~~~---~~~~~~~~~~~~   77 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGI---LNEADIKADRSF---IANEVKGARIYG   77 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHH---HHHTTCCCCTTT---EEEEESEEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHH---HHHcCCCchhhh---hhcccceEEEEe
Confidence            599999995 57999999999999999999998866543 2 34576654   566777543211   111111111111


Q ss_pred             cCC-ccc-----cccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE--cCC--cEEEcCEEEEe
Q 009027          187 EGK-GEI-----WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEG--KILSSHLIIDA  256 (546)
Q Consensus       187 ~~~-~~l-----~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~~g--~~i~ArlVV~A  256 (546)
                      ... ..+     ......++.+++..|++.|.+++.+.|++++.+++++++..+++.++...  .++  .+++|++||+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgA  157 (397)
T 3oz2_A           78 PSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAA  157 (397)
T ss_dssp             TTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeC
Confidence            110 000     11123457899999999999999999999999999999999888765332  233  37999999999


Q ss_pred             cCCChHHHHHhcCCCC---CCeeeeEEEEEeeccC-CCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEE
Q 009027          257 MGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT  332 (546)
Q Consensus       257 DG~~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~  332 (546)
                      ||.+|.++++++....   +..............+ +.+..+++..  ...     ..+++| .||.+++.  ...++..
T Consensus       158 dG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~g~~~-~~~~~~~~--~~vg~~~  227 (397)
T 3oz2_A          158 DGFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLG--SIA-----PAGYIW-VFPKGEGM--ANVGIGS  227 (397)
T ss_dssp             CCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECS--TTS-----TTEEEE-EEEEETTE--EEEEEEE
T ss_pred             CccccHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeee--ccC-----CCceEE-Eeecccce--eEEEEee
Confidence            9999999999976532   2222211111111111 2223333322  222     257888 68877541  2233333


Q ss_pred             ccCCCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhH
Q 009027          333 YIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT  412 (546)
Q Consensus       333 ~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~l  412 (546)
                      ..+......++.+.++++.+..|.+...     .......+.+|... ...++..+|++|+|||||.++|++|+|++.++
T Consensus       228 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~-----~~~~~~~~~~~~~~-~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A~  301 (397)
T 3oz2_A          228 SINWIHNRFELKNYLDRFIENHPGLKKG-----QDIQLVTGGVSVSK-VKMPITMPGLMLVGDAARLIDPITGGGIANAI  301 (397)
T ss_dssp             ETTTSCSHHHHHHHHHHHHHTCHHHHTS-----EEEEEEEEEEECCC-CCSCCEETTEEECGGGGTCSCTTTCCCHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHHhCcccccc-----ceeeeeeccccccC-cccceeeeeEEEcccccccCCCCcchhHHHHH
Confidence            3222222336778888888877765442     22233334566543 23467789999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       413 rd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      .|+..||+.|.++++.++.+..   .|+.|+
T Consensus       302 ~~g~~~A~~i~~~l~~~~~~~~---~L~~Ye  329 (397)
T 3oz2_A          302 VSGMYAAQVTKEAIESNDYSPQ---MMQKYE  329 (397)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccHH---HHHHHH
Confidence            9999999999999998876554   457898

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.97  E-value=6.8e-30  Score=282.74  Aligned_cols=311  Identities=18%  Similarity=0.114  Sum_probs=197.4

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCCcccchhhhhh-c-cCCCc-
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATAT-K-FNPNR-  183 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~-~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~-~-~~~~~-  183 (546)
                      .+|||||||| ++|+++|+.|+++|++|+||||.+.+. ..+...+++.+++.|+++|+++...-...... . +.... 
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~  127 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFT  127 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccc
Confidence            3699999996 569999999999999999999998765 34567899999999999999753210000000 0 11000 


Q ss_pred             ccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE--cCC-cEEEcCEEEEecCCC
Q 009027          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEG-KILSSHLIIDAMGNF  260 (546)
Q Consensus       184 v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~~g-~~i~ArlVV~ADG~~  260 (546)
                      ..+.. ..+..+....+.+++..|.+.|.+++.+.|++|+.+++|+++..++++++|++  .+| ++++|++||+|||.+
T Consensus       128 ~~~~~-~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~  206 (570)
T 3fmw_A          128 QGLDF-GLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGR  206 (570)
T ss_dssp             TCCBG-GGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSS
T ss_pred             ccccc-cccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCC
Confidence            01110 11111223456799999999999999999999999999999999999999988  567 689999999999999


Q ss_pred             hHHHHHhcCCCC---CCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccc-eEEEEEccCC
Q 009027          261 SPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR-TTYMFTYIDP  336 (546)
Q Consensus       261 S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~-~~~l~~~~~~  336 (546)
                      |.+|+++++..+   +...+.+.. +  ..+.... ..  .. ..     ...+++|..+|..++.  . ..++......
T Consensus       207 S~vR~~lGi~~~~~~~~~~~~~~~-v--~~~~~~~-~~--~~-~~-----~~~G~~~~~~P~~~g~--~~~i~~~~~~~~  272 (570)
T 3fmw_A          207 STVRRLAADRFPGTEATVRALIGY-V--TTPEREV-PR--RW-ER-----TPDGILVLAFPPEGGL--GPGWSSSSTGHS  272 (570)
T ss_dssp             CHHHHHTTCCCCCCCCCEEEEEEE-C--CCCSCSS-CC--CC-CC-----CCSSCEEECCCC--------CEEEEEESCC
T ss_pred             chHHHHcCCCCccceeeeEEEEEE-E--EecCCCc-ce--EE-Ee-----cCCEEEEEEeecCCCe--EEEEEEEeCCCC
Confidence            999999987543   222222111 0  1111110 00  00 00     1235666337877651  1 1222222111


Q ss_pred             CC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHh
Q 009027          337 QA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTR  413 (546)
Q Consensus       337 ~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lr  413 (546)
                      ..   ...+.+++.+.+.+.++..    +...+... ....||.......++..+||+|+|||||.++|++|||+|++++
T Consensus       273 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~-~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~  347 (570)
T 3fmw_A          273 PAADEGPVTLEDLGAAVARVRGTP----LTLTEPVS-WLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQ  347 (570)
T ss_dssp             -----CCCCHHHHHHHTTSSSSCC----CCCCSCCE-EEEEECCCCEECSCSEETTEEECGGGTEECCCCSSCHHHHHHH
T ss_pred             ccccccCCCHHHHHHHHHHHhhcc----cccceeee-eeEEeecccccccccccCCEEEEEecceecCCCcCcCHhHHHH
Confidence            11   1235555555443333321    11111110 1234566554456788899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          414 HLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       414 d~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |+..|++.|..+++...    ....|+.|+
T Consensus       348 DA~~La~~La~~~~g~~----~~~lL~~Ye  373 (570)
T 3fmw_A          348 DAVNLGWKLAARVRGWG----SEELLDTYH  373 (570)
T ss_dssp             HHHHHHHHHHHHHHSCC----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC----cHHHHHHHH
Confidence            99999999999886421    245678999

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.97  E-value=9.5e-29  Score=269.52  Aligned_cols=303  Identities=17%  Similarity=0.163  Sum_probs=196.8

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .++||+|||| ++|+++|+.|+++|++|+||||.+.+.. .+...+++++++.|+++|++++  +...  ...  ....|
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~--~~~~--~~~--~~~~~   83 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPR--FGEV--ETS--TQGHF   83 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGG--GCSC--CBC--CEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHH--HHhc--ccc--ccccc
Confidence            4799999995 5799999999999999999999887653 4567899999999999999764  2111  001  00111


Q ss_pred             cCC----ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc---EEEcCEEEEecCC
Q 009027          187 EGK----GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK---ILSSHLIIDAMGN  259 (546)
Q Consensus       187 ~~~----~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~---~i~ArlVV~ADG~  259 (546)
                      .+.    ..+..+....+.+++..|++.|.+++.+.|++++.+++|+++.+++++++|++.++.   +++|++||+|||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~  163 (500)
T 2qa1_A           84 GGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGG  163 (500)
T ss_dssp             TTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCT
T ss_pred             cceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCc
Confidence            110    011111223467899999999999999999999999999999999999999887664   8999999999999


Q ss_pred             ChHHHHHhcCCCC---CCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEc-cC
Q 009027          260 FSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY-ID  335 (546)
Q Consensus       260 ~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~-~~  335 (546)
                      +|.||+++++..+   +...+... .+ . .++.. ..+...   ..     ..+++| ++|.+++   ...+.+.. ..
T Consensus       164 ~S~VR~~lg~~~~~~~~~~~~~~~-~~-~-~~~~~-~~~~~~---~~-----~~g~~~-~~p~~~g---~~~~~~~~~~~  227 (500)
T 2qa1_A          164 RSSVRKAAGFDFPGTAATMEMYLA-DI-K-GVELQ-PRMIGE---TL-----PGGMVM-VGPLPGG---ITRIIVCERGT  227 (500)
T ss_dssp             TCHHHHHTTCCCCEECCCCEEEEE-EE-E-SCCCC-CEEEEE---EE-----TTEEEE-EEEETTT---EEEEEEEETTC
T ss_pred             chHHHHHcCCCcCCCccceEEEEE-EE-E-eCCCC-CceEEE---EC-----CCcEEE-EEEcCCC---EEEEEEEcCCC
Confidence            9999999976542   22222211 11 0 11100 011110   11     135566 6787655   23332222 21


Q ss_pred             CCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhH
Q 009027          336 PQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT  412 (546)
Q Consensus       336 ~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~l  412 (546)
                      ...   ...+.+++.+.+.+.++.  .....+..+.    ..++.......++..+||+|+|||||.++|++|||+|+++
T Consensus       228 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~----~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi  301 (500)
T 2qa1_A          228 PPQRRETPPSWHEVADAWKRLTGD--DIAHAEPVWV----SAFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSI  301 (500)
T ss_dssp             CC-----CCCHHHHHHHHHHHHSC--CCTTSEEEEE----EEEECCEEECSCSEETTEEECGGGTEECCCCSSCHHHHHH
T ss_pred             CCccccCCCCHHHHHHHHHHhcCC--CCCccceeEE----EEeccCcEEccccccCCEEEEEccccCCCCccccchhhhH
Confidence            111   112445444443333221  1111111111    2334433334567789999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       413 rd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +|+..|+..|..+++. . +  ....|..|+
T Consensus       302 ~DA~~La~~La~~~~g-~-~--~~~~L~~Y~  328 (500)
T 2qa1_A          302 QDAVNLGWKLGAVVNG-T-A--TEELLDSYH  328 (500)
T ss_dssp             HHHHHHHHHHHHHHTT-S-S--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-C-C--ChHHHHHHH
Confidence            9999999999988853 2 1  234678999

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.97  E-value=7.6e-29  Score=270.23  Aligned_cols=303  Identities=16%  Similarity=0.206  Sum_probs=198.4

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .++||+|||| ++|+++|+.|+++|++|+||||.+.+.. .+...+++++++.|+++|+++..  ...  ....  ...|
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~--~~~--~~~~--~~~~   84 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAF--GPV--ETST--QGHF   84 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGG--CSC--CEES--EEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHH--Hhc--cccc--ccee
Confidence            3799999995 5799999999999999999999887653 45678999999999999997542  111  0000  0111


Q ss_pred             cCC----ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc---EEEcCEEEEecCC
Q 009027          187 EGK----GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK---ILSSHLIIDAMGN  259 (546)
Q Consensus       187 ~~~----~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~---~i~ArlVV~ADG~  259 (546)
                      .+.    ..+..+....+.+++..|++.|.+++.+.|++|+.+++|+++.+++++++|++.++.   +++|++||+|||.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~  164 (499)
T 2qa2_A           85 GGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGG  164 (499)
T ss_dssp             TTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCT
T ss_pred             cceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCc
Confidence            110    011111223467899999999999999999999999999999999999999987764   8999999999999


Q ss_pred             ChHHHHHhcCCCC---CCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEc-cC
Q 009027          260 FSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY-ID  335 (546)
Q Consensus       260 ~S~vr~ql~~~~~---~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~-~~  335 (546)
                      +|.||+++++..+   +...+... .+ . .++.. ..+...   ..     ..+++| .+|.+++   ...+.+.. ..
T Consensus       165 ~S~VR~~lg~~~~~~~~~~~~~~~-~v-~-~~~~~-~~~~~~---~~-----~~g~~~-~~P~~~g---~~~~~~~~~~~  228 (499)
T 2qa2_A          165 RSTVRKAAGFDFPGTSASREMFLA-DI-R-GCEIT-PRPIGE---TV-----PLGMVM-SAPLGDG---VDRIIVCERGA  228 (499)
T ss_dssp             TCHHHHHTTCCCCEECCCCCEEEE-EE-E-SCCCC-CEEEEE---EE-----TTEEEE-EEECSSS---CEEEEEEETTC
T ss_pred             ccHHHHHcCCCCCCCCCccEEEEE-EE-E-ECCCC-cceEEE---EC-----CCeEEE-EEEcCCC---EEEEEEEecCC
Confidence            9999999976532   22222211 11 1 11100 111111   11     135566 6887765   23333222 21


Q ss_pred             CCC---CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhH
Q 009027          336 PQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT  412 (546)
Q Consensus       336 ~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~l  412 (546)
                      ...   ...+.+++.+.+.+.++.  .....+..+.    ..++.......++..+||+|+|||||.++|++|||+|+++
T Consensus       229 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~----~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi  302 (499)
T 2qa2_A          229 PARRRTGPPPYQEVAAAWQRLTGQ--DISHGEPVWV----SAFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSV  302 (499)
T ss_dssp             CCCCCSSSCCHHHHHHHHHHHHSC--CCTTCEEEEE----EEECCCEEECSCSEETTEEECGGGTEEECCCSSCHHHHHH
T ss_pred             CCccccCCCCHHHHHHHHHHHhCC--CCCccceeEE----EEEeCCcEEcccccCCCEEEEecccccCCCccccchhhhH
Confidence            111   112445554444333321  1111111111    2344433334567789999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       413 rd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +|+..|+..|..+++..  +  ....|+.|+
T Consensus       303 ~DA~~La~~La~~l~g~--~--~~~~L~~Ye  329 (499)
T 2qa2_A          303 QDSVNLGWKLAAVVSGR--A--PAGLLDTYH  329 (499)
T ss_dssp             HHHHHHHHHHHHHHTTS--S--CTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC--C--ChHHHHHHH
Confidence            99999999999888532  1  234578999

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.96  E-value=2e-28  Score=259.02  Aligned_cols=304  Identities=16%  Similarity=0.112  Sum_probs=188.8

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .+|||+||||| +|+++|+.|+++|++|+|+||.+.++. .+...+++..++.|+++|+++.  +..   .......+.+
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~--~~~---~~~~~~~~~~   96 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDI--MET---FGGPLRRMAY   96 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHH--HHH---HSCCCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHH--HHh---hcCCCcceEE
Confidence            36999999965 699999999999999999999987653 3457899999999999998753  211   1111111111


Q ss_pred             cC---Ccc---cccc------ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 009027          187 EG---KGE---IWVE------DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (546)
Q Consensus       187 ~~---~~~---l~~~------~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV  254 (546)
                      ..   +..   +...      ....+.+++..|++.|.+++.+  ++|+.+++|+++..++++++|++++|++++|++||
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV  174 (407)
T 3rp8_A           97 RDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLI  174 (407)
T ss_dssp             EETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEE
T ss_pred             EECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEE
Confidence            11   010   0000      1235679999999999999976  89999999999999999999999999999999999


Q ss_pred             EecCCChHHHHHh-cCCCCCCe--eeeEEEEEee--ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027          255 DAMGNFSPVVKQI-RSGRKPDG--VCLVVGSCAR--GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (546)
Q Consensus       255 ~ADG~~S~vr~ql-~~~~~~~~--~~~~vg~~~~--~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~  329 (546)
                      +|||.+|.+|+++ +....+..  .....+....  ..+.......+..          ..+++| .+|..++   ....
T Consensus       175 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~p~~~~---~~~~  240 (407)
T 3rp8_A          175 AADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVG----------EGKQVS-LMPVSAG---RFYF  240 (407)
T ss_dssp             ECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEEEEE----------TTEEEE-EEEETTT---EEEE
T ss_pred             ECCCcChHHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEEEEC----------CCcEEE-EEEcCCC---eEEE
Confidence            9999999999998 54322211  1111111100  0001111111110          135566 6887765   2333


Q ss_pred             EEEccCCCC---CCccHHHHHHHHH-HhCccccccccCcceE-eeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCC
Q 009027          330 MFTYIDPQA---GSPKLEELLERYW-DLMPEYQGVTLDNLEI-QRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS  404 (546)
Q Consensus       330 l~~~~~~~~---~~~~l~~l~~~~~-~~lp~~~~~~l~~~~~-~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Pls  404 (546)
                      .+.......   ......+.+.+.+ ...|.+... ++.... ....+..+|...  ..++..+|++|||||||.++|++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~rv~LvGDAAh~~~P~~  317 (407)
T 3rp8_A          241 FFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKL-IAALDPQTTNRIEIHDIEP--FSRLVRGRVALLGDAGHSTTPDI  317 (407)
T ss_dssp             EEEEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHH-HHHSCGGGCEEEEEEECCC--CSCCEETTEEECGGGTCCCCGGG
T ss_pred             EEEeCCCcCCCCCchhHHHHHHHHhcCCChHHHHH-HHcCCccceeEEeeEecCC--CCceecCCEEEEEcccccCCcch
Confidence            333321111   1112233332222 222222221 011100 000122344432  14667899999999999999999


Q ss_pred             CCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       405 g~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |||++.+++|+..|++.|..   .+    .....|+.|+
T Consensus       318 GqG~~~al~da~~La~~L~~---~~----~~~~~l~~Y~  349 (407)
T 3rp8_A          318 GQGGCAAMEDAVVLGAVFRQ---TR----DIAAALREYE  349 (407)
T ss_dssp             SCHHHHHHHHHHHHHHHHHS---CC----CHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhc---CC----CHHHHHHHHH
Confidence            99999999999999988863   22    2345678999

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.96  E-value=4e-28  Score=257.02  Aligned_cols=305  Identities=15%  Similarity=0.106  Sum_probs=199.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhh-----cc--CC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT-----KF--NP  181 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~-----~~--~~  181 (546)
                      +||||||||| +|+++|+.|+++|++|+|+||.++++......+++..++.|..+|+++.  +.+....     .+  ..
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~--~~~~~~~~~~~~~~~~~~   82 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDA--VKAQGFQQKFGAKFVRGK   82 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHH--HHHTTCEEECEEEEEETT
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHH--HHHcCCcccCCcEEEeCC
Confidence            5999999965 6999999999999999999999888765566788889999999998643  2111000     00  00


Q ss_pred             C--cccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEE--EcCCc--EEEcCEEEE
Q 009027          182 N--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL--LAEGK--ILSSHLIID  255 (546)
Q Consensus       182 ~--~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~--~~~g~--~i~ArlVV~  255 (546)
                      .  .+.|..  .........+.+++..|++.|.+.+.+.|++++.+++|+++..+++++++.  +.+|+  +++|++||+
T Consensus        83 ~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~  160 (421)
T 3nix_A           83 EIADFNFSD--QFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIID  160 (421)
T ss_dssp             EEEEEETTS--CSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             eeEEEeehh--hcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEE
Confidence            0  001110  001112234679999999999999999999999999999999988876544  45676  799999999


Q ss_pred             ecCCChHHHHHhcCCCCCC---eeeeEEEEEeeccCCCce--eeeeccCCcccccCCCCcceEEEEecCCCCCccceEEE
Q 009027          256 AMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNST--SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM  330 (546)
Q Consensus       256 ADG~~S~vr~ql~~~~~~~---~~~~~vg~~~~~~~~~~~--~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l  330 (546)
                      |||.+|.++++++...+..   ..+.... ..........  ..+.....+.     ...+++| .+|..++   .....
T Consensus       161 A~G~~s~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~-~~P~~~~---~~~vg  230 (421)
T 3nix_A          161 ASGYGRVIPRMFGLDKPSGFESRRTLFTH-IKDVKRPVAAEMEGNRITAVVH-----KPKVWIW-VIPFSNG---NTSVG  230 (421)
T ss_dssp             CCGGGCHHHHHTTCEECCSSCCCEEEEEE-EECTTCCC----CCSEEEEEEE-----ETTEEEE-EEECTTS---EEEEE
T ss_pred             CCCCchhhHHhcCCCCCCcCCCcEEEEEE-ECCCcCCCccCCCCeEEEEEeC-----CCCEEEE-EEEECCC---CEEEE
Confidence            9999999999987653321   2221111 1111110000  1111111111     1356778 7898865   33333


Q ss_pred             EEccCC--CCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcc
Q 009027          331 FTYIDP--QAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF  408 (546)
Q Consensus       331 ~~~~~~--~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~  408 (546)
                      +.....  .....+..++++++....|.+... ++......+ ...+|.+.....++..+|+++||||||+++|++|+|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~-l~~~~~~~~-~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~G~G~  308 (421)
T 3nix_A          231 FVGEPSYFDEYTGTPEERMRAMIANEGHIAER-FKSEEFLFE-PRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSSGA  308 (421)
T ss_dssp             EEECHHHHTTSCSCHHHHHHHHHHTCTTTHHH-HTTCCBSSC-CEEEECCCBEESCSEETTEEECGGGTCBCCSTTCCHH
T ss_pred             EEecHHHhhhcCCCHHHHHHHHHHhCcHHHHH-HhcCccccC-ceeecccceeeeeeccCCEEEecccccccCCcccccH
Confidence            322110  111236778888888877766543 223222211 1233444333346678999999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHhCCC
Q 009027          409 GSLTRHLGRLSTGVYEAVRGDF  430 (546)
Q Consensus       409 g~~lrd~~~Lae~I~~Al~~g~  430 (546)
                      +.++.++..|++.|..+++.+.
T Consensus       309 ~~A~~~a~~la~~l~~~~~~~~  330 (421)
T 3nix_A          309 TFAMESGSKGGKLAVQFLKGEE  330 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCc
Confidence            9999999999999999987654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.96  E-value=2.4e-27  Score=254.85  Aligned_cols=306  Identities=17%  Similarity=0.170  Sum_probs=190.9

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC--Cc-ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG--RE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~--~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      +|||||||| ++|+++|+.|+++|++|+||||.+.++  .. ....++   ...|.++|++...  ...+.....  .+.
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~---~~~l~~lg~~~~~--~~~~~~~~~--~~~   78 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVS---KAHFDKLGMPYPK--GEELENKIN--GIK   78 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEE---HHHHHHTTCCCCC--GGGEEEEEE--EEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCccccccccc---HHHHHHhcCCCCc--hHHHHhhhc--ceE
Confidence            589999996 569999999999999999999988653  11 223343   4567888886532  111111110  011


Q ss_pred             ccCC---ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEcCEEEEe
Q 009027          186 FEGK---GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDA  256 (546)
Q Consensus       186 f~~~---~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~---~g~--~i~ArlVV~A  256 (546)
                      +...   ..+..+ ..++.+++..|++.|.+++.+.|++++.+++|+++..+++.++ |++.   +|+  +++|++||+|
T Consensus        79 ~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~A  157 (453)
T 3atr_A           79 LYSPDMQTVWTVN-GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEA  157 (453)
T ss_dssp             EECTTSSCEEEEE-EEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEEC
T ss_pred             EECCCCceEEeEC-CCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEEC
Confidence            1110   111111 1346799999999999999999999999999999998888765 5553   565  8999999999


Q ss_pred             cCCChHHHHHhcCCCC-----C-CeeeeEEEEEee-c--cCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccce
Q 009027          257 MGNFSPVVKQIRSGRK-----P-DGVCLVVGSCAR-G--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT  327 (546)
Q Consensus       257 DG~~S~vr~ql~~~~~-----~-~~~~~~vg~~~~-~--~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~  327 (546)
                      ||.+|.++++++...+     + ............ .  ..+.....+++.. +..     ..+|+| .||..++.  ..
T Consensus       158 dG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~g~~~-~~P~~~~~--~~  228 (453)
T 3atr_A          158 TGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQ-ETS-----PGGYWW-YFPKGKNK--VN  228 (453)
T ss_dssp             CGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTTEEEEECCT-TTS-----TTSCEE-EEEEETTE--EE
T ss_pred             cCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccCCCeEEEEECC-CCC-----CCcEEE-EEECCCCe--EE
Confidence            9999999998876431     1 111211111111 0  1011222232221 111     246888 78987651  22


Q ss_pred             EEEEEccCCCCCCccHHHHHHHHHHh-CccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 009027          328 TYMFTYIDPQAGSPKLEELLERYWDL-MPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (546)
Q Consensus       328 ~~l~~~~~~~~~~~~l~~l~~~~~~~-lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~  406 (546)
                      .++......  ...+..+.+.+++.. .|.+..     .++.....+.+|... ...+++.+|++|+|||||.++|++|+
T Consensus       229 vg~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~p~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~  300 (453)
T 3atr_A          229 VGLGIQGGM--GYPSIHEYYKKYLDKYAPDVDK-----SKLLVKGGALVPTRR-PLYTMAWNGIIVIGDSGFTVNPVHGG  300 (453)
T ss_dssp             EEEEEESSS--CCCCHHHHHHHHHHHHCTTEEE-----EEEEEEEEEEEECSS-CCSCSEETTEEECGGGGTCSCTTTCC
T ss_pred             EEEEecCCC--CCCCHHHHHHHHHHhhhhhcCC-----CeEEeccceeccCCC-CCCceecCCEEEEeCcccCCCCCccc
Confidence            222222221  112344555555543 333322     122233334566532 23456789999999999999999999


Q ss_pred             cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |++.++.|+..|++.|..+++.++.+.   ..|+.|+
T Consensus       301 G~~~Ai~da~~la~~l~~~l~~~~~~~---~~L~~Y~  334 (453)
T 3atr_A          301 GKGSAMISGYCAAKAILSAFETGDFSA---SGLWDMN  334 (453)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCCST---TTTTHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCccH---HHHHHHH
Confidence            999999999999999999987665432   2456777

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.95  E-value=4.9e-27  Score=246.86  Aligned_cols=311  Identities=15%  Similarity=0.128  Sum_probs=186.6

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC---CCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~---~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      +|||+|||| ++|+++|+.|+++|++|+|+||.+.+   ...+...+++..++.|+++|+++.  +... ........+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~--~~~~-~~~~~~~~~~   78 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRR--MARD-GLVHEGVEIA   78 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHH--HHHH-CEEESCEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHH--HHhc-CCccceEEEE
Confidence            589999996 56999999999999999999998753   223444689999999999999753  2111 0011111111


Q ss_pred             ccCCc-ccccc----ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC-CeEEEEE-cCCc--EEEcCEEEEe
Q 009027          186 FEGKG-EIWVE----DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLL-AEGK--ILSSHLIIDA  256 (546)
Q Consensus       186 f~~~~-~l~~~----~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~V~~-~~g~--~i~ArlVV~A  256 (546)
                      ..+.. .+..+    ....+.+++..+.+.|.+++.+.|++++.+++|+++..++ +++.|++ ++|+  +++|++||+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A  158 (394)
T 1k0i_A           79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC  158 (394)
T ss_dssp             ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred             ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence            11100 00000    1234567888999999999998999999999999998763 5677877 6776  7999999999


Q ss_pred             cCCChHHHHHhcCCCCC--CeeeeEE-EEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEc
Q 009027          257 MGNFSPVVKQIRSGRKP--DGVCLVV-GSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY  333 (546)
Q Consensus       257 DG~~S~vr~ql~~~~~~--~~~~~~v-g~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~  333 (546)
                      ||.+|.+|++++....+  ....... .......+. ...+.++..        ...+++| .+|..++   ...+.+..
T Consensus       159 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~g~~~-~~~~~~~---~~~~~~~~  225 (394)
T 1k0i_A          159 DGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPP-VSHELIYAN--------HPRGFAL-CSQRSAT---RSQYYVQV  225 (394)
T ss_dssp             CCTTCSTGGGSCGGGCEEEEEEEEEEEEEEEESSCC-SCSSCEEEC--------CTTCCEE-EEEEETT---EEEEEEEE
T ss_pred             CCCCcHHHHhcCccccccccccccceeEEEecCCCC-CccceEEEE--------cCCceEE-EEecCCC---cEEEEEEe
Confidence            99999999988643211  1110000 000001110 001111110        0235666 4554333   23333332


Q ss_pred             cCCCCC-CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhH
Q 009027          334 IDPQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT  412 (546)
Q Consensus       334 ~~~~~~-~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~l  412 (546)
                      ...... ..+..+..+.+.+.++......+.......  ...+|.......++..+|++|+|||||.++|++|||+|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ai  303 (394)
T 1k0i_A          226 PLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLE--KSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAA  303 (394)
T ss_dssp             CTTCCGGGCCHHHHHHHHHHTSCHHHHHHCCCCCEEE--EEEEEEEEEEEECSEETTEEECGGGTEECCGGGTCHHHHHH
T ss_pred             CCCCCccccCHHHHHHHHHHhhCcccccccccCccee--eEEEEhhhhhccccccCCEEEEechhhcCCCcccchHHHHH
Confidence            221111 113334444444444332110011101111  12344433223356679999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       413 rd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +|+..|++.|..++..+.     ...|+.|+
T Consensus       304 ~da~~La~~L~~~~~~~~-----~~~L~~Y~  329 (394)
T 1k0i_A          304 SDVSTLYRLLLKAYREGR-----GELLERYS  329 (394)
T ss_dssp             HHHHHHHHHHHHHHHHCC-----GGGGGGHH
T ss_pred             HHHHHHHHHHHHHhccCc-----hHHHHHHH
Confidence            999999999998876432     23568898

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.95  E-value=1.5e-27  Score=251.49  Aligned_cols=306  Identities=15%  Similarity=0.115  Sum_probs=191.1

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCC------
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNP------  181 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~------  181 (546)
                      ++||+||||| +|+++|..|+++|++|+|+||.+.++. .+...+++..++.|+++|+++.  +... ......      
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~--~~~~-~~~~~~~~~~~~   82 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAE--VTRR-GGRVRHELEVYH   82 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHH--HHHT-TCEEECEEEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHH--HHHh-CCCcceeEEEeC
Confidence            5899999965 699999999999999999999876632 3456789999999999998643  1110 000000      


Q ss_pred             -C--cccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEcCEEEE
Q 009027          182 -N--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIID  255 (546)
Q Consensus       182 -~--~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv--~V~~~~g~~i~ArlVV~  255 (546)
                       +  ...+.. ..+.. ..+++.+++..|.+.|.+++.+. |++++.+++|+++..+++++  .|++.+|++++|++||+
T Consensus        83 ~g~~~~~~~~-~~~~~-~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~  160 (399)
T 2x3n_A           83 DGELLRYFNY-SSVDA-RGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVG  160 (399)
T ss_dssp             TTEEEEEEET-TSSCG-GGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEE
T ss_pred             CCCEEEecch-HHhcc-cCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEE
Confidence             0  001110 00111 12346799999999999999988 89999999999999988888  89988888999999999


Q ss_pred             ecCCChHHHHHhcCCCCCC-----e--eeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceE
Q 009027          256 AMGNFSPVVKQIRSGRKPD-----G--VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT  328 (546)
Q Consensus       256 ADG~~S~vr~ql~~~~~~~-----~--~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~  328 (546)
                      |||.+|.+|++++...+..     .  .+.. ..+....+. ..  ..+  .+       ..+++| .+|.+++   ...
T Consensus       161 AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~~-~~~~~~~~~-~~--~~~--~~-------~~~~~~-~~p~~~~---~~~  223 (399)
T 2x3n_A          161 ADGIASYVRRRLLDIDVERRPYPSPMLVGTF-ALAPCVAER-NR--LYV--DS-------QGGLAY-FYPIGFD---RAR  223 (399)
T ss_dssp             CCCTTCHHHHHTSCCCCCCCCCSSCEEEEEE-ECCHHHHHC-EE--EEE--CT-------TSCEEE-EEEETTT---EEE
T ss_pred             CCCCChHHHHHhCCCccccCCCCCCceEEEE-EEecCCCCC-cc--EEE--cC-------CCcEEE-EEEcCCC---EEE
Confidence            9999999999987653221     1  1111 111000111 11  111  11       034566 6776643   222


Q ss_pred             EEEEccCCCCC---C-ccHHHHHHHHHHhCcccc-ccccCcceEeeeeeeeecccc-CCCCCccCCcEEEeCCCCCCCCC
Q 009027          329 YMFTYIDPQAG---S-PKLEELLERYWDLMPEYQ-GVTLDNLEIQRVIYGIFPTYR-DSPLPAAFNRILQFGDASGIQSP  402 (546)
Q Consensus       329 ~l~~~~~~~~~---~-~~l~~l~~~~~~~lp~~~-~~~l~~~~~~~~~~g~~P~~~-~~~~~~~~~rvlLVGDAA~~v~P  402 (546)
                      +.+.+......   . .+.+++.+.+....+.+. .. ++....  .....+|++. ....++..+|++|+|||||.++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P  300 (399)
T 2x3n_A          224 LVVSFPREEARELMADTRGESLRRRLQRFVGDESAEA-IAAVTG--TSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHP  300 (399)
T ss_dssp             EEEECCHHHHHHHHHSTTSHHHHHHHHTTCCGGGHHH-HHTCCC--STTCEECCCCCEECSCSEETTEEECGGGTEECCG
T ss_pred             EEEEeCccccccccccCCHHHHHHHHhhcCCcchhhH-HhcCCc--cceEEechhhcccccccccCcEEEEechhccCCC
Confidence            22212110000   0 111222222222222221 10 111100  0112456654 23346677999999999999999


Q ss_pred             CCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       403 lsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      ++|+|++.+++|+..|++.|..+++.+. +.  ...|+.|+
T Consensus       301 ~~GqG~~~al~da~~La~~L~~~~~~~~-~~--~~~l~~Y~  338 (399)
T 2x3n_A          301 ITGQGMNLAIEDASALADALDLALRDAC-AL--EDALAGYQ  338 (399)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHTTSS-CH--HHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHhhhcccc-hH--HHHHHHHH
Confidence            9999999999999999999999886542 22  34578899

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.95  E-value=2.3e-26  Score=252.31  Aligned_cols=311  Identities=19%  Similarity=0.090  Sum_probs=191.4

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC----
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPN----  182 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~-~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~----  182 (546)
                      .++||||||| ++|+++|+.|+++|++|+||||++.+. ..+...+++.+++.|+++|+++.  +...-. .....    
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~--~~~~~~-~~~~~~~~~   80 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADE--VVRADD-IRGTQGDFV   80 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHH--HHHSCC-SSCTTSCCE
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHH--HHhhCC-Cccccccee
Confidence            3699999996 569999999999999999999998664 34567899999999999998653  111000 00000    


Q ss_pred             --cccccCCccc--------------cc-cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC----eEEEE
Q 009027          183 --RCGFEGKGEI--------------WV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLL  241 (546)
Q Consensus       183 --~v~f~~~~~l--------------~~-~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~  241 (546)
                        .+....+..+              .. .....+.+++..|.+.|.+++.+.|++++++++|+++..+++    +++|+
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~  160 (535)
T 3ihg_A           81 IRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTAR  160 (535)
T ss_dssp             EEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEE
T ss_pred             eeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEE
Confidence              0000000000              00 011245689999999999999999999999999999999998    99998


Q ss_pred             EcCC---cEEEcCEEEEecCCChHHHHHhcCCCCCCeee-eEEEEEee-ccCC---CceeeeeccCCcccccCCCCcceE
Q 009027          242 LAEG---KILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC-LVVGSCAR-GFKD---NSTSDVIYSSSSVKKVGDSEVQLF  313 (546)
Q Consensus       242 ~~~g---~~i~ArlVV~ADG~~S~vr~ql~~~~~~~~~~-~~vg~~~~-~~~~---~~~~~i~~~~~~i~~~~~~~~~~~  313 (546)
                      +.++   .+++|++||+|||.+|.+|++++++.+..... ..+..... .++.   ......+....        .....
T Consensus       161 ~~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------p~~~~  232 (535)
T 3ihg_A          161 LAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHH--------PEFKG  232 (535)
T ss_dssp             EEETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEECCGGGTSCTTCCEEEEEEC--------SSCEE
T ss_pred             EEcCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEeccChhhccCCceEEEEEEC--------CCceE
Confidence            8775   68999999999999999999997654211110 01111111 1110   00000000000        01223


Q ss_pred             EEEecCCCCCccceEEEEEccCCCCC---CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcE
Q 009027          314 WEAFPAGSGPLDRTTYMFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRI  390 (546)
Q Consensus       314 W~~fp~~~g~~~~~~~l~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rv  390 (546)
                      | ++|..++  +...+.+.+......   ..+.+++.+.+.+.++.. .   ...+...  ...+|.......++..+||
T Consensus       233 ~-~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~-~---~~~~~~~--~~~~~~~~~~a~~~~~grv  303 (535)
T 3ihg_A          233 T-FGPTDRP--DRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAP-E---VKPELVD--IQGWEMAARIAERWREGRV  303 (535)
T ss_dssp             E-EEECSST--TEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCS-S---CCCEEEE--EEEEEEEEEEESCSEETTE
T ss_pred             E-EEEecCC--CEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCC-C---CceeEEE--eeEeeeeEEEECccccCCE
Confidence            3 3455432  123333333221111   113333333222222110 0   1112111  1234444333456778999


Q ss_pred             EEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          391 LQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       391 lLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +|+|||||.++|++|+|+|.++.|+..|++.|..+++...    ....|+.|+
T Consensus       304 ~LvGDAAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~~----~~~lL~~Ye  352 (535)
T 3ihg_A          304 FLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQA----GAGLLDTYE  352 (535)
T ss_dssp             EECTTTTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTSS----CTTHHHHHH
T ss_pred             EEEecccccCCCccCCccccccccHHHHHHHHHHHhcCCC----cHHHHHhhH
Confidence            9999999999999999999999999999999999886432    224578899

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.95  E-value=3.1e-26  Score=257.75  Aligned_cols=307  Identities=14%  Similarity=0.139  Sum_probs=191.2

Q ss_pred             cccEEEEcc-hHHHHHHHHHHh-----CCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSF-----KGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPN  182 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~-----~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~  182 (546)
                      ++||+|||| ++|+++|+.|++     .|++|+||||.+.+.. .+...|++++++.|+++|++++.  ..   ......
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l--~~---~~~~~~   82 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKI--LS---EANDMS   82 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHH--HT---TCBCCC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHH--HH---hccccc
Confidence            689999995 579999999999     9999999999876543 45678999999999999997531  11   111111


Q ss_pred             cccccCC---ccc-----------cccccccceeCHHHHHHHHHHHHHhcC---CEEEeCceEEEEEEeC--------Ce
Q 009027          183 RCGFEGK---GEI-----------WVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTYE--------NA  237 (546)
Q Consensus       183 ~v~f~~~---~~l-----------~~~~~l~~~V~~~~L~~~L~~~a~~~G---~~v~~~t~v~~i~~~~--------dg  237 (546)
                      .+.|...   ..+           .......+.+++..|++.|.+++.+.|   ++|..+++++++..++        ++
T Consensus        83 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~  162 (665)
T 1pn0_A           83 TIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYP  162 (665)
T ss_dssp             EEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCC
T ss_pred             eEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCC
Confidence            1111110   000           011112356899999999999999887   7999999999998875        46


Q ss_pred             EEEEEc------------------------------------------CC--cEEEcCEEEEecCCChHHHHHhcCCCCC
Q 009027          238 AVLLLA------------------------------------------EG--KILSSHLIIDAMGNFSPVVKQIRSGRKP  273 (546)
Q Consensus       238 v~V~~~------------------------------------------~g--~~i~ArlVV~ADG~~S~vr~ql~~~~~~  273 (546)
                      |+|++.                                          +|  ++++|++||+|||.+|.||+++++....
T Consensus       163 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g  242 (665)
T 1pn0_A          163 VTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIG  242 (665)
T ss_dssp             EEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEE
T ss_pred             EEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCC
Confidence            777653                                          34  4799999999999999999999875421


Q ss_pred             Ceee---eEEEEEee-ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCC-------CCCcc
Q 009027          274 DGVC---LVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ-------AGSPK  342 (546)
Q Consensus       274 ~~~~---~~vg~~~~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~-------~~~~~  342 (546)
                      ....   .++..... .+++... ......       . ..+.+| ++|..++   ...+.+......       ....+
T Consensus       243 ~~~~~~~~v~d~~~~~~~p~~~~-~~~~~~-------~-~~g~~~-~~P~~~~---~~r~~~~~~~~~~~~~~~~~~~~t  309 (665)
T 1pn0_A          243 EQTDYIWGVLDAVPASNFPDIRS-RCAIHS-------A-ESGSIM-IIPRENN---LVRFYVQLQARAEKGGRVDRTKFT  309 (665)
T ss_dssp             EEEEEEEEEEEEEEECCCTTTTS-EEEEEC-------S-SSCEEE-EEECSTT---CEEEEEEECC----------CCCC
T ss_pred             CCccEEEEEEEEEECCCCCCcce-EEEEEe-------C-CCceEE-EEEcCCC---EEEEEEEeCCccccccccCcCCCC
Confidence            1111   11111000 1211100 011000       0 134555 5787654   333333322211       01124


Q ss_pred             HHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCcc-CCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHH
Q 009027          343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTG  421 (546)
Q Consensus       343 l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~-~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~  421 (546)
                      .+++.+.+.+.+..+. ..+....    .+..++.......++. .+||+|+|||||.++|++|||+|+++.|+..|+..
T Consensus       310 ~e~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~r~a~~~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawk  384 (665)
T 1pn0_A          310 PEVVIANAKKIFHPYT-FDVQQLD----WFTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWK  384 (665)
T ss_dssp             HHHHHHHHHHHHTTSC-CEEEEEE----EEEEEEEEEEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccc-CceeeEE----EEEeeeccceehhhcccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHH
Confidence            5555554433332211 0111111    1223444333344666 69999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCChhhHHHHhhhh
Q 009027          422 VYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       422 I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |...++. . +  ....|+.|+
T Consensus       385 La~vl~g-~-a--~~~lL~tYe  402 (665)
T 1pn0_A          385 LGLVLTG-R-A--KRDILKTYE  402 (665)
T ss_dssp             HHHHHTT-C-B--CGGGGHHHH
T ss_pred             HHHHHcC-C-C--cHHHHHHHH
Confidence            9988863 2 1  234678999

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.95  E-value=1.9e-26  Score=251.90  Aligned_cols=313  Identities=19%  Similarity=0.191  Sum_probs=193.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHH-HHHHcCCCCcccchhhhh-------hccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEATA-------TKFN  180 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~-~L~~lGl~~~~~ie~~i~-------~~~~  180 (546)
                      +||||||||| +|+++|+.|+++|++|+||||.+.++......+.+.... .+..+|+++.  +.....       ..+.
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~--~~~~~~~~~~~~~~~~~   84 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDE--MKRAGFPIKRGGTFRWG   84 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHH--HHTTTCCEECEEEEECS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHH--HHHcCCccccCceEEec
Confidence            5999999965 699999999999999999999987765555567776554 7888898643  111000       0000


Q ss_pred             C--C--cccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE---EEEEcCCc--EEEcC
Q 009027          181 P--N--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLLAEGK--ILSSH  251 (546)
Q Consensus       181 ~--~--~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv---~V~~~~g~--~i~Ar  251 (546)
                      .  .  .+.|....  .......+.+++..|.+.|.+++.+.|++++.+++|+++..+++.+   ++...+|+  +++|+
T Consensus        85 ~~~~~~~~~~~~~~--~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad  162 (512)
T 3e1t_A           85 KEPEPWTFGFTRHP--DDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHAR  162 (512)
T ss_dssp             SCSSCEEEESSSSS--SSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEE
T ss_pred             CCccccccccccCC--CCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcC
Confidence            0  0  01111100  1112235679999999999999999999999999999999988864   44444564  89999


Q ss_pred             EEEEecCCChHHHHHhcCCCC---CCeeeeEEEEEee--ccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccc
Q 009027          252 LIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCAR--GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR  326 (546)
Q Consensus       252 lVV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~~--~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~  326 (546)
                      +||+|||.+|.++++++....   +...+. .+....  ..+.......+..   ..     ..+++| .+|..++   .
T Consensus       163 ~VI~AdG~~S~vr~~lg~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~---~~-----~~G~~~-~~Pl~~~---~  229 (512)
T 3e1t_A          163 FIVDASGNRTRVSQAVGERVYSRFFQNVAL-YGYFENGKRLPAPRQGNILSA---AF-----QDGWFW-YIPLSDT---L  229 (512)
T ss_dssp             EEEECCCTTCSSGGGTCCEEECSTTCEEEE-EEEEESCCCCSTTCTTSEEEE---EE-----TTEEEE-EEECSSS---E
T ss_pred             EEEECCCcchHHHHHcCCCccCchhcceEE-EEEecCCccCCCCCcCceEEE---Ee-----CCceEE-EEEeCCC---e
Confidence            999999999999999854311   112221 111110  0111111111110   00     246788 7898865   3


Q ss_pred             eEEEEEccC--CCCCCccHHHHHHHHHHhCccccccccCcceEe-eeeeeeec---cccCCCCCccCCcEEEeCCCCCCC
Q 009027          327 TTYMFTYID--PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQ-RVIYGIFP---TYRDSPLPAAFNRILQFGDASGIQ  400 (546)
Q Consensus       327 ~~~l~~~~~--~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~-~~~~g~~P---~~~~~~~~~~~~rvlLVGDAA~~v  400 (546)
                      ....+.+..  .........+.+++++...|.+... +...... ...++.++   .+.....++..+|++|||||||++
T Consensus       230 ~~vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~-l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~  308 (512)
T 3e1t_A          230 TSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEY-LAPATRVTTGDYGEIRIRKDYSYCNTSFWKNGMALVGDAACFV  308 (512)
T ss_dssp             EEEEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHH-HTTCEECCSSTTSSCEEEESCCEEESCSBCSSEEECGGGTEEC
T ss_pred             EEEEEEecHHHhhhhcCCHHHHHHHHHHhCchHHHH-HhcCccccccccccceeeccccccccccccCCEEEEechhhcC
Confidence            333332221  1111124567777777666654432 1111100 00001111   111112356789999999999999


Q ss_pred             CCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          401 SPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       401 ~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +|++|+|++++++|+..|++.|..++..+. +.  -..|+.|+
T Consensus       309 ~P~~GqG~~~Al~dA~~La~~L~~~l~~~~-~~--~~aL~~Ye  348 (512)
T 3e1t_A          309 DPVFSSGVHLATYSALLVARAINTCLAGEM-SE--QRCFEEFE  348 (512)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHHHHHHTTTCS-CH--HHHHHHHH
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHcCCc-cH--HHHHHHHH
Confidence            999999999999999999999998876432 22  23567888

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.94  E-value=5.1e-26  Score=252.51  Aligned_cols=315  Identities=15%  Similarity=0.106  Sum_probs=196.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhh-------ccCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT-------KFNP  181 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~-------~~~~  181 (546)
                      ++|||||||| +|+++|+.|+++|++|+|||+.+.++......+++.....|+.+|+++.  +......       .+..
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~--l~~~~~~~~~~~~~~~~~  100 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEK--IDAQNYVKKPSATFLWGQ  100 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHH--HHHHCCEEECEEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHH--HHhcCCcccCCcEEEecC
Confidence            5899999965 6999999999999999999999888766667899999999999998743  2111000       0000


Q ss_pred             ----CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeEEEEEc-CC--cEEEcCEE
Q 009027          182 ----NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLA-EG--KILSSHLI  253 (546)
Q Consensus       182 ----~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~V~~~-~g--~~i~ArlV  253 (546)
                          ....|............++.+++..|.+.|.+++.+.|++++++++|+++..+ ++.+.|++. +|  .+++|++|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlV  180 (591)
T 3i3l_A          101 DQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFV  180 (591)
T ss_dssp             SCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEE
T ss_pred             CCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEE
Confidence                01111110000001123467999999999999999999999999999999875 556778776 66  58999999


Q ss_pred             EEecCCChHHHHHhcCCCCCCeeee-EEEEEeec---cCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEE
Q 009027          254 IDAMGNFSPVVKQIRSGRKPDGVCL-VVGSCARG---FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY  329 (546)
Q Consensus       254 V~ADG~~S~vr~ql~~~~~~~~~~~-~vg~~~~~---~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~  329 (546)
                      |+|||.+|.++++++.......... .+......   .+.......+..   ..     ..+++| .+|..++   ....
T Consensus       181 V~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~---~~-----~~G~~w-~iPl~~~---~~sv  248 (591)
T 3i3l_A          181 IDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSI---TF-----EDGWVW-MIPIKDD---LYSV  248 (591)
T ss_dssp             EECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTCEEEE---EE-----TTEEEE-EEECSSS---EEEE
T ss_pred             EECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCceEEE---Ec-----CCcEEE-EEECCCC---eEEE
Confidence            9999999999999876432111110 01011110   011001111110   00     246778 7888754   3232


Q ss_pred             EEEccCCCCC---CccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCC
Q 009027          330 MFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG  406 (546)
Q Consensus       330 l~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~  406 (546)
                      .+........   ..+..++++++....|.+... +......... ..++.+.....++..+|+++||||||+++|++|+
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~p~l~~~-l~~~~~~~~~-~~~~~~~~~~~~~~~~rvvLIGDAAh~~~Pl~Gq  326 (591)
T 3i3l_A          249 GLVVDRSKSAEVREQGADAFYSSTLAKCAKAMDI-LGGAEQVDEV-RIVQDWSYDTEVFSADRFFLCGDAACFTDPLFSQ  326 (591)
T ss_dssp             EEEEEGGGHHHHHHHCHHHHHHHHHTTCHHHHHH-HTTCEECSCC-EEEEEEEEEESCSEETTEEECGGGTCBCCGGGCC
T ss_pred             EEEcCHHHHhhhccCCHHHHHHHHHHhCHHHHHH-HhcCccccCc-eEecccccchhhcccCCEEEEccccccCCCcccc
Confidence            2222111100   113456666666666654332 1111110000 0111111122356789999999999999999999


Q ss_pred             cchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       407 G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |++++++|+..|++.|..++..+..   .-..++.|+
T Consensus       327 GinlAl~dA~~LA~~L~~~l~~~~~---~~~al~~Y~  360 (591)
T 3i3l_A          327 GVHLASQSAVSAAAAIDRITRHGDE---KDAVHAWYN  360 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCch---HHHHHHHHH
Confidence            9999999999999999999875431   123467788

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.94  E-value=3.1e-26  Score=240.07  Aligned_cols=304  Identities=18%  Similarity=0.102  Sum_probs=184.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .+||+||||| +|+++|..|+++|++|+|+||.+.++. .+...+++..++.|+++|+++.  +..   .......+.+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~--~~~---~~~~~~~~~~~   85 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDD--VLQ---GSHTPPTYETW   85 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHH--HHT---TCBCCSCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHH--HHh---hCCCccceEEE
Confidence            5899999965 699999999999999999999887653 3456788999999999998642  111   11111111111


Q ss_pred             C-Cccc---cccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          188 G-KGEI---WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       188 ~-~~~l---~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                      . +..+   ..+....+.+++..|.+.|.+++.+.|++++.+++|+++..  ++ .|++.+|++++|++||+|||.+|.+
T Consensus        86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~v~~~~g~~~~ad~vV~AdG~~s~v  162 (379)
T 3alj_A           86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG-RLTLQTGEVLEADLIVGADGVGSKV  162 (379)
T ss_dssp             ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT-EEEETTSCEEECSEEEECCCTTCHH
T ss_pred             eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-EEEECCCCEEEcCEEEECCCccHHH
Confidence            1 1110   00011236789999999999999999999999999999976  45 7888888899999999999999999


Q ss_pred             HHHhcCCCCCCe--eeeEEEEEeecc---CC---CceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccC
Q 009027          264 VKQIRSGRKPDG--VCLVVGSCARGF---KD---NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID  335 (546)
Q Consensus       264 r~ql~~~~~~~~--~~~~vg~~~~~~---~~---~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~  335 (546)
                      +++++....+..  .....+.+....   +.   ....+.+..++        ..+++| .+|..++   .....+....
T Consensus       163 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~p~~~~---~~~~~~~~~~  230 (379)
T 3alj_A          163 RDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWP--------RVQRIL-YSPCNEN---ELYLGLMAPA  230 (379)
T ss_dssp             HHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECCSS--------SCCEEE-EEECSSS---EEEEEEEECT
T ss_pred             HHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceEEC--------CCCEEE-EEECCCC---cEEEEEEecC
Confidence            999975321111  100011111000   10   01112110111        246777 7898765   2232333321


Q ss_pred             CCCCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccC-CCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhh
Q 009027          336 PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRH  414 (546)
Q Consensus       336 ~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd  414 (546)
                      ..+....+.+.++++...++.+... ++.......  ..+|++.. ...++..+|++|||||||.++|++|+|+|++++|
T Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~-l~~~~~~~~--~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~ai~d  307 (379)
T 3alj_A          231 ADPRGSSVPIDLEVWVEMFPFLEPC-LIEAAKLKT--ARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVN  307 (379)
T ss_dssp             TCTTTTCSSCCHHHHHHHCGGGHHH-HHHHHTCTT--CCEEEEEEEEESCSEETTEEECTHHHHCCCGGGSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHhcCCchhccHHHH-HhhCCccce--EEecccccCCCCCcccCcEEEEEcccCCCCcchhhhHHHHHHH
Confidence            1111123444455555444411111 000000000  01222211 1235567999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       415 ~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +..|++.|...   +  +  ....|+.|+
T Consensus       308 a~~La~~L~~~---~--~--~~~~l~~Y~  329 (379)
T 3alj_A          308 AFSLSQDLEEG---S--S--VEDALVAWE  329 (379)
T ss_dssp             HHHHHHHTTSS---S--C--HHHHHHHHH
T ss_pred             HHHHHHHhccc---c--C--HHHHHHHHH
Confidence            99998877531   1  1  134578898

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.94  E-value=2.3e-25  Score=235.08  Aligned_cols=301  Identities=15%  Similarity=0.130  Sum_probs=176.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC--cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR--EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~--~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .+||+||||| +|+++|+.|+++|++|+|+||.+.+..  ...+.+++..++.|.++|+++ ...      ........+
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~-~~~------~~~~~~~~~   77 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL-DSI------SVPSSSMEY   77 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG-GGT------CBCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc-ccc------cccccceEE
Confidence            5899999965 699999999999999999999876522  334568999999999999975 111      011111111


Q ss_pred             c---CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          187 E---GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       187 ~---~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                      .   .+..+.........+++..|.+.|.+.+  .|++++.+++|+++..++++++|++.+|++++|++||+|||.+|.+
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           78 VDALTGERVGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             EETTTCCEEEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred             EecCCCCccccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchhH
Confidence            1   1111111000112366788888888876  4889999999999999999999999889899999999999999999


Q ss_pred             HHHhcCCCCCCeeee--EEEEEee-ccCCC------ceeeeeccCCcccccCCCCcceEEEEecCCCCCcc---ceEEEE
Q 009027          264 VKQIRSGRKPDGVCL--VVGSCAR-GFKDN------STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD---RTTYMF  331 (546)
Q Consensus       264 r~ql~~~~~~~~~~~--~vg~~~~-~~~~~------~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~---~~~~l~  331 (546)
                      |++++ ...+.....  ..+.+.. .++..      ....++...         +..++  .+|.+++...   ...+.+
T Consensus       156 r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~g~~~~~~~~~~  223 (397)
T 2vou_A          156 RKRLL-GIEPTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLD---------DGHLI--AYPIPGRENAESPRLNFQW  223 (397)
T ss_dssp             HHHHH-CCCCEEEEEEEEEEEECTTSSCHHHHHHHTTEEEEEEET---------TEEEE--EEEECCSSTTSCCEEEEEE
T ss_pred             HHHhc-cCCCCccceEEEEEEeeccccChhhhhhhcCceeEEecC---------CCEEE--EEECCCCCCccceeEEEEE
Confidence            99998 543321110  1111110 01000      000010000         11111  1222110000   111111


Q ss_pred             EccCCC----------C--------------CCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccC
Q 009027          332 TYIDPQ----------A--------------GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAF  387 (546)
Q Consensus       332 ~~~~~~----------~--------------~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~  387 (546)
                      ......          .              ....+.++.+.+...++.+... ++...   .. ..+|++.....++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~  298 (397)
T 2vou_A          224 YWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKPFRDL-VLNAS---SP-FVTVVADATVDRMVH  298 (397)
T ss_dssp             EEECCTTHHHHHHTBCTTSCBCSSEECGGGCCHHHHHHHHHHHTTSCHHHHHH-HHHCS---SC-EEEEEEEBCCSCSEE
T ss_pred             EecCCCccchhhhccCCCCcccccccCcccCCHHHHHHHHHHHHhhChHHHHH-HhccC---Cc-ceeeeeeecCCceec
Confidence            110000          0              0113334444332222222211 01100   00 123444333446778


Q ss_pred             CcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          388 NRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       388 ~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +||+|+|||||.++|++|||+|++++|+..|++.|..   .+  +.  -..|+.|+
T Consensus       299 grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~---~~--~~--~~~L~~Ye  347 (397)
T 2vou_A          299 GRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK---NH--DL--RGSLQSWE  347 (397)
T ss_dssp             TTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH---CS--CH--HHHHHHHH
T ss_pred             CcEEEEeccccccCCcchhhHHHHHHHHHHHHHHHhc---CC--CH--HHHHHHHH
Confidence            9999999999999999999999999999999988763   11  21  35678999

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.94  E-value=7.1e-26  Score=237.53  Aligned_cols=320  Identities=17%  Similarity=0.163  Sum_probs=174.3

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-cc--ccCCHHHHHHHHHcCCCCcccchhhhh-hccCCCcccc
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QE--WNISRKELLELVESGILVEDDIDEATA-TKFNPNRCGF  186 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r~--~~Is~~~l~~L~~lGl~~~~~ie~~i~-~~~~~~~v~f  186 (546)
                      .|+|||| ++|+++|+.|+++|++|+|+||.+.+... ++  ..+++..++.|+++|+.+.  +..+.. .........+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~--~~~~~~~~~~~~~~~~~   80 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAEN--WLAFEEASRYIGGQSRF   80 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHH--HHHHHHHCEEECCCCEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHH--HHHhhhhhcccCcceeE
Confidence            5999995 57999999999999999999999877542 23  3578999999999998542  111110 0010000000


Q ss_pred             ----------cCC-cccc--ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCE
Q 009027          187 ----------EGK-GEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHL  252 (546)
Q Consensus       187 ----------~~~-~~l~--~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~Arl  252 (546)
                                .+. .+..  ......+.|++..|.++|.+.+   +.+|+.++++++++..++ .++|+++||++++||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~---~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adl  157 (412)
T 4hb9_A           81 YNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGL---ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDV  157 (412)
T ss_dssp             ECTTSCEEEC--------------CEEEEEHHHHHHHHHTTC---TTTEECSCCEEEEEECTTSCEEEEETTSCEEEESE
T ss_pred             ecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhc---cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeE
Confidence                      000 0000  0011124688999999887654   457999999999987655 5889999999999999


Q ss_pred             EEEecCCChHHHHHhcCCCCCCeee--eEEEEEeeccC-CCceeeeeccCCcccccCCCCc---ceEEEEecCCCCC---
Q 009027          253 IIDAMGNFSPVVKQIRSGRKPDGVC--LVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEV---QLFWEAFPAGSGP---  323 (546)
Q Consensus       253 VV~ADG~~S~vr~ql~~~~~~~~~~--~~vg~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~---~~~W~~fp~~~g~---  323 (546)
                      ||+|||.+|.||++++...+.....  ...+....... .....+.+....+....+....   -.+| ..|.....   
T Consensus       158 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  236 (412)
T 4hb9_A          158 LVGADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRDGTPNSIVPKSPDWLFISMW-RAPVNIHVEAS  236 (412)
T ss_dssp             EEECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTSSCCEEECCSSSEEEEEEEE-EEESCTTSCGG
T ss_pred             EEECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhccCCcceEeecCCCcceeeee-ecCCceeEEEe
Confidence            9999999999999997654432211  11111110000 0000000000001000000011   1112 12211100   


Q ss_pred             ----ccceEEEEEcc-CCCCCC---ccHHHHHHHHHHh----CccccccccCcceEeeeeeeeeccccC-CCCCccCCcE
Q 009027          324 ----LDRTTYMFTYI-DPQAGS---PKLEELLERYWDL----MPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRI  390 (546)
Q Consensus       324 ----~~~~~~l~~~~-~~~~~~---~~l~~l~~~~~~~----lp~~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rv  390 (546)
                          .+...+++... +..+..   .+.+.+.+.+...    .|.++.. ++...... . ..++.+.. ...++..+||
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l-i~~~~~~~-~-~~~~~~~~~~~~~~~~grv  313 (412)
T 4hb9_A          237 LAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMISWDPSLHTL-VQQSDMEN-I-SPLHLRSMPHLLPWKSSTV  313 (412)
T ss_dssp             GCCEEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTTTSCHHHHHH-HHTSCTTC-C-EEEEEEECCCCCCCCCCSE
T ss_pred             ccCCCceEEEEEecccccccccccccchHHHHHHHHHHhccCChHHHHH-HHhcccce-e-ccchhccccccccccccCE
Confidence                01111122111 111111   1222222222222    2322221 01110000 0 01111111 1235678999


Q ss_pred             EEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          391 LQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       391 lLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +|+|||||.++|++|||.|+++.|+..|++.|..++.... +.  -..|+.||
T Consensus       314 ~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~~-~~--~~aL~~Ye  363 (412)
T 4hb9_A          314 TLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASGHE-EL--VKAISDYE  363 (412)
T ss_dssp             EECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTSS-CH--HHHHHHHH
T ss_pred             EEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCc-CH--HHHHHHHH
Confidence            9999999999999999999999999999999998876532 21  23578999

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.94  E-value=6.4e-25  Score=246.12  Aligned_cols=310  Identities=17%  Similarity=0.191  Sum_probs=189.2

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHh-CCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhh--h---ccC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSF-KGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA--T---KFN  180 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~-~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~--~---~~~  180 (546)
                      .++||+|||| ++|+++|+.|++ +|++|+||||.+.+.. .+...+++.+++.|+++|++++  +.....  .   -+.
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~--~~~~~~~~~~~~~~~  108 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADS--ILKEACWINDVTFWK  108 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHH--HHHHSEEECEEEEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHH--HHHhcccccceEEEC
Confidence            3699999996 579999999999 9999999999887653 3567899999999999998643  111000  0   000


Q ss_pred             -----CCcccccCC---ccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeCC----eEEEEEc---
Q 009027          181 -----PNRCGFEGK---GEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN----AAVLLLA---  243 (546)
Q Consensus       181 -----~~~v~f~~~---~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d----gv~V~~~---  243 (546)
                           ...+.....   ..........+.+++..+.+.|.+++.+.|+  +|+.+++|+++..+++    +++|++.   
T Consensus       109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~  188 (639)
T 2dkh_A          109 PDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCD  188 (639)
T ss_dssp             ECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECS
T ss_pred             CCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecc
Confidence                 011100000   0000011123568999999999999999987  9999999999998763    5777765   


Q ss_pred             ---CC--cEEEcCEEEEecCCChHHHHHhcCCCC---CCeeeeEEEEEe-eccCCCceeeeeccCCcccccCCCCcceEE
Q 009027          244 ---EG--KILSSHLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFW  314 (546)
Q Consensus       244 ---~g--~~i~ArlVV~ADG~~S~vr~ql~~~~~---~~~~~~~vg~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W  314 (546)
                         +|  .+++|++||+|||.+|.+|+++++..+   ......++.... ..+++.. ....+..         ..+++|
T Consensus       189 ~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~---------~~g~~~  258 (639)
T 2dkh_A          189 AAHAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVR-YKVAIQS---------EQGNVL  258 (639)
T ss_dssp             GGGTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCEEEEEEEEEECCTTTT-SEEEEEE---------TTEEEE
T ss_pred             ccCCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceEEEEEEEEccCCCccc-eeEEEEc---------CCceEE
Confidence               45  479999999999999999999986532   111111111111 1122110 0011100         135566


Q ss_pred             EEecCCCCCccceEEEEEccC--CC----CCCccHHHHHHHHHHhCccccccccCcceEeee-eeeeeccccCCCCCcc-
Q 009027          315 EAFPAGSGPLDRTTYMFTYID--PQ----AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV-IYGIFPTYRDSPLPAA-  386 (546)
Q Consensus       315 ~~fp~~~g~~~~~~~l~~~~~--~~----~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~-~~g~~P~~~~~~~~~~-  386 (546)
                       .+|..++  ....+.+....  ..    ....+.+++.+.+.+.+..+.      ..+... .+..++.......++. 
T Consensus       259 -~~P~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~  329 (639)
T 2dkh_A          259 -IIPREGG--HLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPYK------LEVKNVPWWSVYEIGQRICAKYDD  329 (639)
T ss_dssp             -EEECTTS--SCEEEEEECC-----------CCCHHHHHHHHHHHHTTSC------EEEEEEEEEEEECCCCEECSCSBS
T ss_pred             -EEEcCCC--cEEEEEEECCCcCcccccccCCCCHHHHHHHHHHHhCccc------CcceeeeEEEecccccchhhhhhc
Confidence             6787654  12333333221  00    011245555554433222111      111111 1123333222223444 


Q ss_pred             -----------CCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          387 -----------FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       387 -----------~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                                 .+||+|+|||||.++|++|||+|.++.|+..|+..|...++. . +  ....|+.|+
T Consensus       330 ~~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~g-~-a--~~~lL~~Ye  393 (639)
T 2dkh_A          330 VVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRK-Q-C--APELLHTYS  393 (639)
T ss_dssp             CCCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHTT-S-B--CGGGGHHHH
T ss_pred             cccccccccCccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHcC-C-C--cHHHHHHHH
Confidence                       799999999999999999999999999999999999988863 2 1  234578899

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.93  E-value=2e-24  Score=238.01  Aligned_cols=301  Identities=14%  Similarity=0.107  Sum_probs=184.6

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhh-hh------cc-
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEAT-AT------KF-  179 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i-~~------~~-  179 (546)
                      ++||+|||| ++|+++|+.|+++|++|+||||.+.+.. .+...+++.+++.|+++|+++.  +.+.. ..      .+ 
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~--~~~~~~~~~~~~~~~~~  103 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQ--IRTAGWPGDHPLDAAWV  103 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHH--HHTSSCCTTSBCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHH--HHhhcCCcccccceEEe
Confidence            589999995 5799999999999999999999876643 4567899999999999998643  11100 00      00 


Q ss_pred             ---CCCc---ccccCCc---cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---C--
Q 009027          180 ---NPNR---CGFEGKG---EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--  245 (546)
Q Consensus       180 ---~~~~---v~f~~~~---~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g--  245 (546)
                         ....   +.+....   .........+.+++..|++.|.+++.+.   ++.+++|+++..++++|+|++.+   |  
T Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~  180 (549)
T 2r0c_A          104 TRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGAT  180 (549)
T ss_dssp             SSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCE
Confidence               0000   0010000   0000011236789999999999999876   99999999999999999888765   5  


Q ss_pred             cEEEcCEEEEecCCChHHHHHhcCCCCC---CeeeeEEEEEeec--cC---CCceeeeeccCCcccccCCCCcceEEEEe
Q 009027          246 KILSSHLIIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARG--FK---DNSTSDVIYSSSSVKKVGDSEVQLFWEAF  317 (546)
Q Consensus       246 ~~i~ArlVV~ADG~~S~vr~ql~~~~~~---~~~~~~vg~~~~~--~~---~~~~~~i~~~~~~i~~~~~~~~~~~W~~f  317 (546)
                      .+++|++||+|||.+|.+|+++++..+.   ...+..  .....  +.   ........+..   .+    +...+| ++
T Consensus       181 ~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~p----~~~~~~-~~  250 (549)
T 2r0c_A          181 RAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRN--ILFRAPELRSLLGERAALFFFLM---LS----SSLRFP-LR  250 (549)
T ss_dssp             EEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEE--EEEECTTHHHHHGGGCCSEEEEE---EE----TTEEEE-EE
T ss_pred             EEEEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEE--EEEECCchHHhcCCCCceEEEEE---CC----CCcEEE-EE
Confidence            4799999999999999999999875432   121111  11110  00   00000000000   00    102333 45


Q ss_pred             cCCCCCccceEEEEEccC-CC-CCCccHHHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCC
Q 009027          318 PAGSGPLDRTTYMFTYID-PQ-AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGD  395 (546)
Q Consensus       318 p~~~g~~~~~~~l~~~~~-~~-~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGD  395 (546)
                      |..++  ..  +.+.... .. .....+.+.+.+++.   .  ..  . .+...  ...++.......++..+||+|+||
T Consensus       251 p~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~~---~--~~--~-~~~~~--~~~~~~~~~~a~~~~~grv~L~GD  316 (549)
T 2r0c_A          251 ALDGR--GL--YRLTVGVDDASKSTMDSFELVRRAVA---F--DT--E-IEVLS--DSEWHLTHRVADSFSAGRVFLTGD  316 (549)
T ss_dssp             ESSSS--SE--EEEEEECSTTCCSCCCHHHHHHHHBC---S--CC--C-CEEEE--EEEEEECCEECSCSEETTEEECGG
T ss_pred             EECCC--cE--EEEEecCCCCCCCHHHHHHHHHHHhC---C--CC--c-eeEEE--EecchhHhhhHHhhcCCcEEEEcc
Confidence            65432  12  2222111 11 111245555554432   1  11  1 11111  123444333344677899999999


Q ss_pred             CCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          396 ASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       396 AA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      |||.++|++|||+|.+++|+..|++.|...++... .   ...|..|+
T Consensus       317 AAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~a-~---~~lL~~Y~  360 (549)
T 2r0c_A          317 AAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWA-G---PGLLATYE  360 (549)
T ss_dssp             GTEECCCGGGHHHHHHHHHHHHHHHHHHHHHHTCS-C---TTTTHHHH
T ss_pred             ccccCCCccCCccccccHHHHHHHHHHHHHHcCCC-C---HHHHHHHH
Confidence            99999999999999999999999999998886421 1   23567898

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.93  E-value=1.8e-24  Score=229.11  Aligned_cols=305  Identities=18%  Similarity=0.248  Sum_probs=181.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~r-VlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      ++|||||||| +|+++|+.|+++|++ |+|+||.+.++. .+...++++.++.|+++|+++.  +...   ......+.+
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~--l~~~---~~~~~~~~~   78 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA--LAAT---AIPTHELRY   78 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHH--HHHH---SEEECEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHH--HHhh---CCCcceEEE
Confidence            5899999964 699999999999999 999999887653 3456789999999999998643  2111   000001111


Q ss_pred             cC--Cccccc-------c-ccccceeCHHHHHHHHHHHHHh-cCC-EEEeCceEEEEEEeCCeEEEEEcC---C--cEEE
Q 009027          187 EG--KGEIWV-------E-DILNLGVSPAKLIEIVKKRFIS-LGG-VIFEGYSVSSICTYENAAVLLLAE---G--KILS  249 (546)
Q Consensus       187 ~~--~~~l~~-------~-~~l~~~V~~~~L~~~L~~~a~~-~G~-~v~~~t~v~~i~~~~dgv~V~~~~---g--~~i~  249 (546)
                      ..  +..+..       . ....+.+++..|.+.|.+++.+ .|+ +++.+++|+++.. +++++|++.+   |  .+++
T Consensus        79 ~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~  157 (410)
T 3c96_A           79 IDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALG  157 (410)
T ss_dssp             ECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEE
T ss_pred             EcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEe
Confidence            10  000000       0 0112568999999999999987 474 8999999999988 7788888765   6  5899


Q ss_pred             cCEEEEecCCChHHHHHhcCCCCCCee---eeEEEEEee-ccCCCceeeeeccCCcccccCCCCcceEEEEecCCC----
Q 009027          250 SHLIIDAMGNFSPVVKQIRSGRKPDGV---CLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGS----  321 (546)
Q Consensus       250 ArlVV~ADG~~S~vr~ql~~~~~~~~~---~~~vg~~~~-~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~----  321 (546)
                      |++||+|||.+|.+|++++........   ....+.... .+..... .+++  ++.      ..+++| .||..+    
T Consensus       158 ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~--~~~------~~~~~~-~~p~~~~~~~  227 (410)
T 3c96_A          158 ADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFLDGKT-MIVA--NDE------HWSRLV-AYPISARHAA  227 (410)
T ss_dssp             ESEEEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEESCCTTSSE-EEEE--ECT------TCCEEE-EEECCHHHHT
T ss_pred             cCEEEECCCccchhHHHhcCCCCCCCcCCeeEEEeecccccccCCCe-EEEe--cCC------CCcEEE-EEecCCcccC
Confidence            999999999999999999654321111   111011100 0101111 1111  110      123455 566542    


Q ss_pred             -CCccceEEEEEccC--------CCC-C-CccHHHHHHHHHHhCcc---ccccccCcceEeeeeeeeeccccCC-CCCcc
Q 009027          322 -GPLDRTTYMFTYID--------PQA-G-SPKLEELLERYWDLMPE---YQGVTLDNLEIQRVIYGIFPTYRDS-PLPAA  386 (546)
Q Consensus       322 -g~~~~~~~l~~~~~--------~~~-~-~~~l~~l~~~~~~~lp~---~~~~~l~~~~~~~~~~g~~P~~~~~-~~~~~  386 (546)
                       +. ....+.+....        ... . .....++.+.|....+.   +... +....   . ...+|+.... ..++.
T Consensus       228 ~g~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-i~~~~---~-~~~~~~~~~~~~~~~~  301 (410)
T 3c96_A          228 EGK-SLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDL-LTRNQ---L-ILQYPMVDRDPLPHWG  301 (410)
T ss_dssp             TTC-EEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHHHHHTTCCBTTBCHHHH-HHTCS---E-EEEEEEEECCCCSCCC
T ss_pred             CCC-cEEEEEEEecCcccccCCCccccCCCCCHHHHHHHhcCCCCchhHHHHH-HhcCc---c-cceeecccCCCccccc
Confidence             21 11222221110        000 1 12445555443221111   1111 01111   0 1123443322 23566


Q ss_pred             CCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          387 FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       387 ~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      .+||+|||||||.++|++|||+|++++|+..|++.|...   +  +  ....|+.|+
T Consensus       302 ~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~---~--~--~~~~L~~Ye  351 (410)
T 3c96_A          302 RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARN---A--D--VAAALREYE  351 (410)
T ss_dssp             BTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC---S--S--HHHHHHHHH
T ss_pred             cCCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHhcc---C--C--HHHHHHHHH
Confidence            799999999999999999999999999999999988652   2  1  234678999

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.91  E-value=1e-23  Score=222.55  Aligned_cols=152  Identities=15%  Similarity=0.191  Sum_probs=109.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc---ccccCCH-HHHHHHHHcCCCCcccchhhhhhccCCCcc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE---QEWNISR-KELLELVESGILVEDDIDEATATKFNPNRC  184 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~---r~~~Is~-~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v  184 (546)
                      ++||+||||| +|+++|+.|+++|++|+|+||.+.+...   ..+.+++ ...+.|+++|+++.  +...   ...... 
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~--~~~~---~~~~~~-   99 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQT--YYDL---ALPMGV-   99 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHH--HHHH---CBCCCE-
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHH--HHHh---hcccce-
Confidence            5899999965 6999999999999999999998765421   2344543 45778999998753  2111   000000 


Q ss_pred             cccC--Ccccc-c--c---ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEe
Q 009027          185 GFEG--KGEIW-V--E---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (546)
Q Consensus       185 ~f~~--~~~l~-~--~---~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~A  256 (546)
                      .+..  +..+. .  +   ......+++..|.+.|.+++.+  ++++.+++|+++..++++++|++.+|++++||+||+|
T Consensus       100 ~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~A  177 (398)
T 2xdo_A          100 NIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLEN--DTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILA  177 (398)
T ss_dssp             EEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCT--TSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEEC
T ss_pred             EEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCC--CEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEEC
Confidence            1111  10000 0  1   0112458999999999988753  6899999999999988899999988888999999999


Q ss_pred             cCCChHHHHHhcC
Q 009027          257 MGNFSPVVKQIRS  269 (546)
Q Consensus       257 DG~~S~vr~ql~~  269 (546)
                      ||.+|.+|++++.
T Consensus       178 dG~~S~vR~~l~~  190 (398)
T 2xdo_A          178 NGGMSKVRKFVTD  190 (398)
T ss_dssp             SCTTCSCCTTTCC
T ss_pred             CCcchhHHhhccC
Confidence            9999999998853

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.91  E-value=3.2e-22  Score=221.92  Aligned_cols=322  Identities=15%  Similarity=0.103  Sum_probs=180.2

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhC------CCeEEEEcCCCCCCCc--ccccCCHHHHHHHHHcCCCCcc--cchhhhh-h
Q 009027          110 TFDVIVCGG-TLGIFIATALSFK------GLRVAIVERNTLKGRE--QEWNISRKELLELVESGILVED--DIDEATA-T  177 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~------G~rVlLlEr~~~~~~~--r~~~Is~~~l~~L~~lGl~~~~--~ie~~i~-~  177 (546)
                      +|||||||| ++|+++|+.|+++      |++|+||||.+.++.+  ....+++..++.|  ++-|...  .++..+. .
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l~~~~~~g~~~~~~~~~~  112 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--FPDWKEKGAPLNTPVTED  112 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--CTTHHHHTCCCCEECCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--HHHHHhcCCceeeeechh
Confidence            599999996 5699999999998      9999999999876642  2334677776655  2211100  0000000 0


Q ss_pred             c--c-CC-CcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EE-EEEc------CC
Q 009027          178 K--F-NP-NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLLA------EG  245 (546)
Q Consensus       178 ~--~-~~-~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~-V~~~------~g  245 (546)
                      .  + .. ..+.+............++.+++..|.++|.+++.+.|++|+.+++|+++..++++ ++ |.+.      +|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G  192 (584)
T 2gmh_A          113 RFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDG  192 (584)
T ss_dssp             EEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTS
T ss_pred             heeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCC
Confidence            0  0 00 00111100000001112467899999999999999999999999999999887754 43 6654      23


Q ss_pred             ---------cEEEcCEEEEecCCChHHHHHh----cCCC--CCCeeeeEEEEEeeccCC--Cceeee--eccCCcccccC
Q 009027          246 ---------KILSSHLIIDAMGNFSPVVKQI----RSGR--KPDGVCLVVGSCARGFKD--NSTSDV--IYSSSSVKKVG  306 (546)
Q Consensus       246 ---------~~i~ArlVV~ADG~~S~vr~ql----~~~~--~~~~~~~~vg~~~~~~~~--~~~~~i--~~~~~~i~~~~  306 (546)
                               .+++||+||+|||.+|.+++++    +...  .+......+.... .++.  ...+.+  .+.. +.... 
T Consensus       193 ~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~g~~~~~-~v~~~~~~~~~~~~~~g~-~~~~~-  269 (584)
T 2gmh_A          193 APKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELW-VIDEKKWKPGRVDHTVGW-PLDRH-  269 (584)
T ss_dssp             CEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEEEEEEEE-ECCGGGCCTTEEEEEEET-TSCTT-
T ss_pred             CcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHhhhhhhe-ecCcccccCCeEEEEEec-cccCC-
Confidence                     6899999999999999999887    4332  1212111111111 1211  011111  1111 11100 


Q ss_pred             CCCcceEEEEecCC--CCCccceEEEEEccCCCCCCccHHHHHHHHHHhCccccccccCcceEeeee-eeeeccccCCCC
Q 009027          307 DSEVQLFWEAFPAG--SGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVI-YGIFPTYRDSPL  383 (546)
Q Consensus       307 ~~~~~~~W~~fp~~--~g~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~-~g~~P~~~~~~~  383 (546)
                        ..+..| +||..  ++  ....++....+......+..+.+++|.. .|.+... ++..+..... ...++.......
T Consensus       270 --~~gg~~-~~~~~~~~~--~~~vg~~~~~~~~~~~~~~~~~l~~~~~-~p~i~~~-l~~~~~~~~~~~~~~~~~~~~~~  342 (584)
T 2gmh_A          270 --TYGGSF-LYHLNEGEP--LLALGFVVGLDYQNPYLSPFREFQRWKH-HPSIKPT-LEGGKRIAYGARALNEGGFQSIP  342 (584)
T ss_dssp             --SCEEEE-EEECCSSSC--EEEEEEEEETTCCCTTCCHHHHHHHHTT-STTTHHH-HTTCEEEEEEEEEEECCGGGGCC
T ss_pred             --cCCceE-EEEecCCCC--eEEEEEEEecCcccccCChHHHHHHHHh-ChHHHHH-hCCCeEEEecceEccCCCcccCC
Confidence              112234 45654  33  1222222211111111133455555543 3444332 2222221111 112233322234


Q ss_pred             CccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCC-CChhhHHHHhhhh
Q 009027          384 PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF-VDSYSLSLLNPYM  443 (546)
Q Consensus       384 ~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~-l~~~~l~~L~~Ye  443 (546)
                      ++..+|++|||||||+++|++|+|+++++.|+..|++.|..+++.++ ........|+.|+
T Consensus       343 ~~~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~~~~~~a~~~L~~Ye  403 (584)
T 2gmh_A          343 KLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYE  403 (584)
T ss_dssp             CCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHH
T ss_pred             ccccCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhHHHHH
Confidence            66789999999999999999999999999999999999999997653 1111100257788

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.89  E-value=5.8e-23  Score=223.81  Aligned_cols=299  Identities=12%  Similarity=0.100  Sum_probs=169.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHh---CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhh-----c--
Q 009027          110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT-----K--  178 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~---~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~-----~--  178 (546)
                      .+|||||||| +|+++|+.|++   +|++|+|||+...+.......+.+.....|..+|+.+..-+......     .  
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~~~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~~~~   81 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGIRFE   81 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC-------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEEEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCCceeeccccCcchHHHHHHcCCCHHHHHHHcCCeEeccceec
Confidence            4799999976 69999999999   99999999998766543334456666778888898642101111000     0  


Q ss_pred             -cCC-Cc--c-ccc----------------------C----------------------Cccc----c----------cc
Q 009027          179 -FNP-NR--C-GFE----------------------G----------------------KGEI----W----------VE  195 (546)
Q Consensus       179 -~~~-~~--v-~f~----------------------~----------------------~~~l----~----------~~  195 (546)
                       +.. ..  + .|.                      +                      ....    .          ..
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  161 (511)
T 2weu_A           82 NWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQR  161 (511)
T ss_dssp             SSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGCC
T ss_pred             CCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccCc
Confidence             000 00  0 000                      0                      0000    0          00


Q ss_pred             --ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEcCEEEEecCCChHHHH-HhcCC
Q 009027          196 --DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPVVK-QIRSG  270 (546)
Q Consensus       196 --~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~g~~i~ArlVV~ADG~~S~vr~-ql~~~  270 (546)
                        ....+.+++..|.+.|.+++.+.|++++.+ +|+++..++++  +.|++.+|++++|++||+|||.+|.+++ .++.+
T Consensus       162 ~~~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~  240 (511)
T 2weu_A          162 AQFPYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGR  240 (511)
T ss_dssp             SCCSCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCCC
T ss_pred             CCCCeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCC
Confidence              123467999999999999999999999999 99999886666  6677778888999999999999999854 45543


Q ss_pred             C------CCCeeeeEEEEEeeccCCCc-eeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCccH
Q 009027          271 R------KPDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKL  343 (546)
Q Consensus       271 ~------~~~~~~~~vg~~~~~~~~~~-~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~~l  343 (546)
                      .      .+...+..+  ... .+... .......  ...     ..+++| .+|..+.   .... +.+..........
T Consensus       241 ~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~--~~~-----~~g~~~-~~P~~~~---~~~g-~~~~~~~~~~~~~  305 (511)
T 2weu_A          241 FQSFSDVLPNNRAVAL--RVP-RENDEDMRPYTTA--TAM-----SAGWMW-TIPLFKR---DGNG-YVYSDEFISPEEA  305 (511)
T ss_dssp             EEECTTTCCCCEEEEE--EEE-CSSGGGCCSSEEE--EEE-----TTEEEE-EEECSSE---EEEE-EEECTTTSCHHHH
T ss_pred             CccccccCcccceEEE--Eec-cCCCCCCCcceec--eec-----CCCcEE-EEECCCc---eEEE-EEECCCCCCHHHH
Confidence            1      111111111  111 11000 0000000  001     246778 7887642   2222 2222211111233


Q ss_pred             HHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHH
Q 009027          344 EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  423 (546)
Q Consensus       344 ~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~  423 (546)
                      .+.+.+++...|.+     .+..       .++.+.....++..+|++|||||||.++|++|+|+++++.|+..|++.|.
T Consensus       306 ~~~l~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~  373 (511)
T 2weu_A          306 ERELRSTVAPGRDD-----LEAN-------HIQMRIGRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFP  373 (511)
T ss_dssp             HHHHHHHHCTTCTT-----SCCE-------EEECCCEEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhCccccc-----ccce-------eEEeeccccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHhc
Confidence            33333333222211     1111       11221111224456999999999999999999999999999888887664


Q ss_pred             HHHhCCCCChhhHHHHhhhh
Q 009027          424 EAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       424 ~Al~~g~l~~~~l~~L~~Ye  443 (546)
                          .+...   -..|+.|+
T Consensus       374 ----~~~~~---~~~l~~Y~  386 (511)
T 2weu_A          374 ----GERWD---PVLISAYN  386 (511)
T ss_dssp             ----CTTCC---HHHHHHHH
T ss_pred             ----cCCCC---HHHHHHHH
Confidence                22212   23456787

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.89  E-value=5.3e-23  Score=225.31  Aligned_cols=291  Identities=15%  Similarity=0.164  Sum_probs=171.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHh------------CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhh
Q 009027          110 TFDVIVCGGT-LGIFIATALSF------------KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA  176 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~------------~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~  176 (546)
                      .+|||||||| +|+++|+.|++            .|++|+|||+...++......+++.....|+.+|+.+..-+.+.-.
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~~g~g~~~~p~~~~~l~~lGi~e~~~~~~~~~   86 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRSTLSKIGIDENDFIRQCDA   86 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCCCCSCEECCTHHHHHHHHHTCCHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCCcceeeechHhHHHHHHHcCCCHHHHHHHcCC
Confidence            5899999975 69999999999            9999999999877664444567888889999999975310121110


Q ss_pred             h--------ccCC------C-c-------------ccccC------C--------------------------ccccccc
Q 009027          177 T--------KFNP------N-R-------------CGFEG------K--------------------------GEIWVED  196 (546)
Q Consensus       177 ~--------~~~~------~-~-------------v~f~~------~--------------------------~~l~~~~  196 (546)
                      .        .+..      . .             +.|..      .                          .....+.
T Consensus        87 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~~~~  166 (526)
T 2pyx_A           87 SFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYHFQN  166 (526)
T ss_dssp             EEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTTCCSS
T ss_pred             EEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccccCCCC
Confidence            0        0100      0 0             00100      0                          0000001


Q ss_pred             cccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEcCEEEEecCCChHH-HHHhcCCCC
Q 009027          197 ILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPV-VKQIRSGRK  272 (546)
Q Consensus       197 ~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv--~V~~~~g~~i~ArlVV~ADG~~S~v-r~ql~~~~~  272 (546)
                      ...+.+++..|.+.|.+++.+ .|++++.+ +|+++..+++++  .|.+++|.+++|++||+|||.+|.+ ++.++....
T Consensus       167 ~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~~~  245 (526)
T 2pyx_A          167 NYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVPFL  245 (526)
T ss_dssp             CCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCCEE
T ss_pred             CeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCcc
Confidence            123569999999999999998 89999999 699998876653  5667677789999999999999998 566664321


Q ss_pred             ------CCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCccHHHH
Q 009027          273 ------PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEEL  346 (546)
Q Consensus       273 ------~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~~l~~l  346 (546)
                            +...+..+..................   ..     ..+++| .+|..++   ... .+.+...........+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~g~~~-~~pl~~~---~~~-~~v~~~~~~~~~~~~~~  312 (526)
T 2pyx_A          246 SQKSVLFNDRALAIQVPYSDANSPIASCTHST---AQ-----PNGWIW-DIGLPTR---KGV-GYVYSSSHTNDIDAQKT  312 (526)
T ss_dssp             ECHHHHCCCEEEEEEEECSSTTCCCCSSEEEE---EE-----TTEEEE-EEECSSE---EEE-EEEECTTTCCHHHHHHH
T ss_pred             cccccccCccEEEEEeeccCCCCCCCCceeEE---ec-----CCCeEE-EeeCCCc---eEE-EEEecCCCCChHHHHHH
Confidence                  01111111110000000000000000   00     246778 6787643   222 22222111111234444


Q ss_pred             HHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHH
Q 009027          347 LERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  423 (546)
Q Consensus       347 ~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~  423 (546)
                      +.+++.....  .  ++..+..     .++.......++..+|++|||||||.++|++|+|+++++.|+..|++.|.
T Consensus       313 l~~~l~~~~~--~--l~~~~~~-----~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~  380 (526)
T 2pyx_A          313 LFNYLGVDGA--A--ADKLEPR-----QLAINPGYRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLP  380 (526)
T ss_dssp             HHHHHTCCHH--H--HHHCCCE-----EEECCCEEESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhcCc--c--cccCCce-----EEecccCccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhh
Confidence            4444422110  0  1101111     12222111235567999999999999999999999999999998887654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.89  E-value=4.8e-22  Score=218.99  Aligned_cols=301  Identities=13%  Similarity=0.100  Sum_probs=174.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHh---CCCeEEEEcCCCCCCCcccccCCHHHHH-HHHHcCCCCcccchhhh-----hh--
Q 009027          110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEAT-----AT--  177 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~---~G~rVlLlEr~~~~~~~r~~~Is~~~l~-~L~~lGl~~~~~ie~~i-----~~--  177 (546)
                      .+|||||||| +|+++|+.|++   .|++|+|||+...+.......+.+.... .|+.+|+.+..-+....     ..  
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~~g~~~  104 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKF  104 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCCCCCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEECEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCccceeeeechhHHHHHHHHhCCChHHHHHhcCCeEEEeeeE
Confidence            6899999965 69999999999   9999999999877654333467777777 88899987431121110     00  


Q ss_pred             -ccCCC-------------c-c---ccc--------------------CC-c-c----------cc---c---------c
Q 009027          178 -KFNPN-------------R-C---GFE--------------------GK-G-E----------IW---V---------E  195 (546)
Q Consensus       178 -~~~~~-------------~-v---~f~--------------------~~-~-~----------l~---~---------~  195 (546)
                       .+...             . .   .|.                    +. . .          +.   .         +
T Consensus       105 ~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (550)
T 2e4g_A          105 INWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKV  184 (550)
T ss_dssp             ESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCTTSCBC
T ss_pred             eecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhhcCCCC
Confidence             01000             0 0   000                    00 0 0          00   0         0


Q ss_pred             ccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEcCEEEEecCCChHH-HHHhcCCC
Q 009027          196 DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPV-VKQIRSGR  271 (546)
Q Consensus       196 ~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dg--v~V~~~~g~~i~ArlVV~ADG~~S~v-r~ql~~~~  271 (546)
                      ....+.+++..|.+.|.+++.+. |++++.+ +|+++..++++  +.|.+++|++++|++||+|||.+|.+ ++.++.+.
T Consensus       185 ~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~~~  263 (550)
T 2e4g_A          185 TNYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPF  263 (550)
T ss_dssp             SCCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCCCE
T ss_pred             CCcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCCCc
Confidence            12245699999999999999998 9999999 99999886665  56777788889999999999999998 45555432


Q ss_pred             C------CCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCccHHH
Q 009027          272 K------PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEE  345 (546)
Q Consensus       272 ~------~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~~l~~  345 (546)
                      .      +...+..+.................    ..    ...+++| .+|..+.    ....+.+...........+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~g~~~-~ipl~~~----~~~g~v~~~~~~~~~~~~~  330 (550)
T 2e4g_A          264 LDMSDHLLNDSAVATQVPHDDDANGVEPFTSA----IA----MKSGWTW-KIPMLGR----FGTGYVYSSRFATEDEAVR  330 (550)
T ss_dssp             EECTTTCCCCEEEEEEEECCHHHHCCCSSEEE----EE----CSSEEEE-EEECSSE----EEEEEEECTTTSCHHHHHH
T ss_pred             ccccccccccceEEEeecccCCcccCCCceee----ee----cCCceEE-EccCCCc----cceEEEEecCCCChHHHHH
Confidence            0      1111111110000000000000000    00    0246777 6787642    2222233221111113333


Q ss_pred             HHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHH
Q 009027          346 LLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA  425 (546)
Q Consensus       346 l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~A  425 (546)
                      .+.+++...|.+     .+...       ++.......++..+|++|||||||+++|++|+|+++++.|+..|++.|.  
T Consensus       331 ~l~~~~~~~p~l-----~~~~~-------i~~~~~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~--  396 (550)
T 2e4g_A          331 EFCEMWHLDPET-----QPLNR-------IRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFP--  396 (550)
T ss_dssp             HHHHHTTCCTTT-----SCCEE-------EECCCEEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCC--
T ss_pred             HHHHhhCcCccc-----CCCce-------EEecCCCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhcc--
Confidence            333333222211     11111       1111111224567999999999999999999999999999888886553  


Q ss_pred             HhCCCCChhhHHHHhhhh
Q 009027          426 VRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       426 l~~g~l~~~~l~~L~~Ye  443 (546)
                        .+...   -..|+.|+
T Consensus       397 --~~~~~---~~~l~~Y~  409 (550)
T 2e4g_A          397 --DKSLN---PVLTARFN  409 (550)
T ss_dssp             --CTTCC---HHHHHHHH
T ss_pred             --ccCCC---HHHHHHHH
Confidence              22212   23567787

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.87  E-value=1.5e-21  Score=214.33  Aligned_cols=284  Identities=13%  Similarity=0.099  Sum_probs=167.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHh---CCCeEEEEcCCCCCCCcccccCCHHHHH-HHHHcCCCCcccchhhhhh-----cc
Q 009027          110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEATAT-----KF  179 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~---~G~rVlLlEr~~~~~~~r~~~Is~~~l~-~L~~lGl~~~~~ie~~i~~-----~~  179 (546)
                      .+|||||||| +|+++|+.|++   .|++|+|||+...++.....++++.... .+..+|+.+..-+......     .+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~g~~~   84 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFKAAIKF   84 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCCCCSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEEECEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCCcCCCcccchhHHHHHHHHhCCCHHHHHHhcCchhhCCccc
Confidence            5899999965 69999999999   9999999999876654434456777777 8888898643111111000     00


Q ss_pred             ---CC------CcccccCCc--------cc--------------c----------------c--------cccccceeCH
Q 009027          180 ---NP------NRCGFEGKG--------EI--------------W----------------V--------EDILNLGVSP  204 (546)
Q Consensus       180 ---~~------~~v~f~~~~--------~l--------------~----------------~--------~~~l~~~V~~  204 (546)
                         ..      ....++...        .+              .                .        +....+.+++
T Consensus        85 ~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~  164 (538)
T 2aqj_A           85 VNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHAWHFDA  164 (538)
T ss_dssp             ESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCEEEECH
T ss_pred             cCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCccEEEeH
Confidence               00      000000000        00              0                0        0122456999


Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEcCEEEEecCCChHHHH-HhcCCCC-C-----Ce
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPVVK-QIRSGRK-P-----DG  275 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~g~~i~ArlVV~ADG~~S~vr~-ql~~~~~-~-----~~  275 (546)
                      ..|.+.|.+.+.+.|++++.+ +|+++..++++  +.|.+.+|++++|++||+|||.+|.+++ .++.+.. .     ..
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~~~~~  243 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDMSDYLLCD  243 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEECTTTCCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCccccccccccc
Confidence            999999999999999999999 89999886664  4677777878999999999999999854 4444310 0     01


Q ss_pred             eeeEEEEEeeccCCC---ceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCCCCCCccHHHHHHHHHH
Q 009027          276 VCLVVGSCARGFKDN---STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWD  352 (546)
Q Consensus       276 ~~~~vg~~~~~~~~~---~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~  352 (546)
                      .+..+  ... ....   ........   ..     ..+++| .+|..++   .... +.+...........+.+.+++.
T Consensus       244 ~~~~~--~~~-~~~~~~~~~~~~~~~---~~-----~~g~~~-~~p~~~~---~~~g-~v~~~~~~~~~~~~~~l~~~~~  307 (538)
T 2aqj_A          244 SAVAS--AVP-NDDARDGVEPYTSSI---AM-----NSGWTW-KIPMLGR---FGSG-YVFSSHFTSRDQATADFLKLWG  307 (538)
T ss_dssp             EEEEE--EEE-CCHHHHCCCSSEEEE---EC-----SSEEEE-EEEETTE---EEEE-EEECTTTSCHHHHHHHHHHHHT
T ss_pred             eEEEE--ecc-cCCcccCCCCceeee---ec-----CCceEE-EecCCCc---eEEE-EEEcCCCCChHHHHHHHHHHhc
Confidence            11111  110 0000   00000000   00     246788 6787643   2222 2222111111233334444332


Q ss_pred             hCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhHhhHHHHHHHHH
Q 009027          353 LMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  423 (546)
Q Consensus       353 ~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~  423 (546)
                      ..|      +.+..       .++.......++..+|++|||||||.++|++|+|+++++.|+..|++.|.
T Consensus       308 ~~~------~~~~~-------~~~~~~~~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~  365 (538)
T 2aqj_A          308 LSD------NQPLN-------QIKFRVGRNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFP  365 (538)
T ss_dssp             CCT------TCCCE-------EEECCCEEESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             CCC------CCCce-------EEeeccccccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhh
Confidence            211      11111       12222111235667999999999999999999999999999888886553

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.84  E-value=7.3e-21  Score=199.58  Aligned_cols=288  Identities=12%  Similarity=0.063  Sum_probs=155.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCCcccchhhhhhcc-CCCcccc
Q 009027          112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKF-NPNRCGF  186 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~-r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~-~~~~v~f  186 (546)
                      ||+||||| +|+++|+.|+++  |++|+|+||++.++.. ....++++.+..+...+++.    +..+...+ ....+.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   77 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYL----DAPERLNPQFLEDFKL   77 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGS----SCGGGGCCEEECCEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhh----hhhHHHhhccccceEE
Confidence            89999965 699999999999  9999999998876421 12233333322111122220    11011111 0001111


Q ss_pred             c-CCcccccc-ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          187 E-GKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       187 ~-~~~~l~~~-~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                      . .+..+... ....+.+++..|.+.|.+++.+.|++++.+++|+++...           .+++|++||+|||.+|. |
T Consensus        78 ~~~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S~-R  145 (381)
T 3c4a_A           78 VHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNHK-T  145 (381)
T ss_dssp             EESSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGGG-T
T ss_pred             EeCCeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCch-H
Confidence            1 11111111 111246899999999999999999999999999877421           13689999999999999 8


Q ss_pred             HHhcC--CCCCCeeeeEEEEEeeccCC-CceeeeeccCCcccccCCCCcceEE-EEecCCCCCccceEEEEEccC-----
Q 009027          265 KQIRS--GRKPDGVCLVVGSCARGFKD-NSTSDVIYSSSSVKKVGDSEVQLFW-EAFPAGSGPLDRTTYMFTYID-----  335 (546)
Q Consensus       265 ~ql~~--~~~~~~~~~~vg~~~~~~~~-~~~~~i~~~~~~i~~~~~~~~~~~W-~~fp~~~g~~~~~~~l~~~~~-----  335 (546)
                      +++..  +......  .......+... .+.....+.   ..     ..+++| ..+|..++   ...+++...+     
T Consensus       146 ~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~-----~~g~~~~~~~p~~~~---~~~~~~~~~~~~~~~  212 (381)
T 3c4a_A          146 AHFTEALVPQVDYG--RNKYIWYGTSQLFDQMNLVFR---TH-----GKDIFIAHAYKYSDT---MSTFIVECSEETYAR  212 (381)
T ss_dssp             CCSSGGGCCCCEEE--EEEEEEEEESSCCSSEEEEEE---EE-----TTEEEEEEEEECSSS---CEEEEEEECHHHHHH
T ss_pred             HhhhhhcCCCcccC--CccEEEEecCCCCCcceeeEe---eC-----CCcEEEEEEEEecCC---eEEEEEECCcccccc
Confidence            87632  1111111  11111111111 111111111   00     234444 46887654   2333332211     


Q ss_pred             CCC---CCccHHHHHHHHHH-hCccccccccCcceEeeeeeeeecccc-CCCCCccCCcEEEeCCCCCCCCCCCCCcchh
Q 009027          336 PQA---GSPKLEELLERYWD-LMPEYQGVTLDNLEIQRVIYGIFPTYR-DSPLPAAFNRILQFGDASGIQSPVSFGGFGS  410 (546)
Q Consensus       336 ~~~---~~~~l~~l~~~~~~-~lp~~~~~~l~~~~~~~~~~g~~P~~~-~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~  410 (546)
                      ...   ......+.+.+++. ..|..+-.  +...+      .+|.+. ....++..+||+|+|||||.++|++|||+|+
T Consensus       213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~--~~~~~------~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~  284 (381)
T 3c4a_A          213 ARLGEMSEEASAEYVAKVFQAELGGHGLV--SQPGL------GWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTM  284 (381)
T ss_dssp             TTSSSSCHHHHHHHHHHHTHHHHTTCCCB--CCTTT------CSEEEEECCCSCSEETTEEECGGGTCCCCGGGCCHHHH
T ss_pred             CCcccCChHHHHHHHHHHhcccCCCchhh--cCCCc------ceeeeccccCCCcccCCEEEEEccccccCCCccccHHH
Confidence            000   01122222322222 22222111  11100      122221 1233567799999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       411 ~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                      +++|+..|++.|..+   +  +  .-..|+.|+
T Consensus       285 al~Da~~La~~L~~~---~--~--~~~aL~~Y~  310 (381)
T 3c4a_A          285 AVVVAQLLVKALCTE---D--G--VPAALKRFE  310 (381)
T ss_dssp             HHHHHHHHHHHHHHS---S--S--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc---c--c--HHHHHHHHH
Confidence            999999999988763   1  1  234678899

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.79  E-value=1.7e-18  Score=184.93  Aligned_cols=299  Identities=14%  Similarity=0.140  Sum_probs=154.2

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc--cc---ccCCHHHHHHHHHcCC--CCccc--chhhhhhc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE--QE---WNISRKELLELVESGI--LVEDD--IDEATATK  178 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~--r~---~~Is~~~l~~L~~lGl--~~~~~--ie~~i~~~  178 (546)
                      ..+||+||||| +|+++|+.|+++|++|+||||.+.+...  +.   ..+...++..+..+|+  |....  ++......
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  100 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNEWPSEEFGYFGHYYYV  100 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCCSCHHHHCEEEEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhhhhhhcccccceeEEE
Confidence            35899999975 6999999999999999999998743221  11   1244567777777765  32100  00000000


Q ss_pred             cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCc-eEEEEEEeCCeEEEEEcCCcEEEcCEEEEec
Q 009027          179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGY-SVSSICTYENAAVLLLAEGKILSSHLIIDAM  257 (546)
Q Consensus       179 ~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t-~v~~i~~~~dgv~V~~~~g~~i~ArlVV~AD  257 (546)
                      ..+..+.|.+  .+   ......|++..+...|.+++.+.|++++... .+.++            +....++++||+||
T Consensus       101 ~~~~~~~~~~--~~---~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l------------~~~~~~ad~VV~Ad  163 (430)
T 3ihm_A          101 GGPQPMRFYG--DL---KAPSRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDL------------EGLSEQYDLLVVCT  163 (430)
T ss_dssp             CSSSCEEEEE--EE---EEEEBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGH------------HHHHTTSSEEEECC
T ss_pred             CCCCccccch--hc---CCcceeecHHHHHHHHHHHHHHcCCEEEEEecchhhh------------hhhcccCCEEEECC
Confidence            0111122211  11   1234679999999999999999999887632 11111            00113689999999


Q ss_pred             CCChHHHHHhcCC--CCCCe--eeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecC--CCCCccceEEEE
Q 009027          258 GNFSPVVKQIRSG--RKPDG--VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPA--GSGPLDRTTYMF  331 (546)
Q Consensus       258 G~~S~vr~ql~~~--~~~~~--~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~--~~g~~~~~~~l~  331 (546)
                      |.+|.++......  .+++.  ..... ....++.......+.+.   +.  +  +.+.+| .+|.  .++.  ...+++
T Consensus       164 G~~S~~~~~~~~~~~~~~~~p~r~~~~-~~~~g~~~~~~~~~~~~---~~--~--~~G~~~-~~p~~~~~g~--~~~~~~  232 (430)
T 3ihm_A          164 GKYALGKVFEKQSENSPFEKPQRALCV-GLFKGIKEAPIRAVTMS---FS--P--GHGELI-EIPTLSFNGM--STALVL  232 (430)
T ss_dssp             CCTTGGGGSCBCGGGCCCSSCSSEEEE-EEEESBCCCSSCCEEEE---EE--T--TTEEEE-EEEEEETTEE--EEEEEE
T ss_pred             CCcchHHhccCCCCCCcccCCCeeEEE-EEEccCCCCCcCeeeee---ec--C--CCcceE-EecccCCCcc--eEEEEE
Confidence            9999876322111  11111  11111 11222221111011110   00  0  123344 3442  2221  122222


Q ss_pred             EccCCCC----------CCc--cHHHHHHHHHHhCccccccccCcce--E----eee-eeeeeccccCCCCCccCCcEEE
Q 009027          332 TYIDPQA----------GSP--KLEELLERYWDLMPEYQGVTLDNLE--I----QRV-IYGIFPTYRDSPLPAAFNRILQ  392 (546)
Q Consensus       332 ~~~~~~~----------~~~--~l~~l~~~~~~~lp~~~~~~l~~~~--~----~~~-~~g~~P~~~~~~~~~~~~rvlL  392 (546)
                      .......          ..+  .++.+.+.|....|..... +....  .    ... ...++|.......++..+|++|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (430)
T 3ihm_A          233 ENHIGSDLEVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAER-IDPAEFDLANSSLDILQGGVVPAFRDGHATLNNGKTII  311 (430)
T ss_dssp             EECTTSSSGGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTT-BCTTTCEESSSTTSEEEECCCCEEBCSEEECTTSCEEE
T ss_pred             EecCCCcHHHhccccCCCCHHHHHHHHHHHHHHhCccHHHH-HhhchhccccCccceeecceeecccccccccCCCCEEE
Confidence            2211100          011  1223344444445544332 12222  0    000 1123454433233556788888


Q ss_pred             -eCCCCCCCCCCCCCcchhhHhhHHHHHHHHHHHHhCCCCChhhHHHHhhhh
Q 009027          393 -FGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM  443 (546)
Q Consensus       393 -VGDAA~~v~Plsg~G~g~~lrd~~~Lae~I~~Al~~g~l~~~~l~~L~~Ye  443 (546)
                       +|||||.++|++|||.|++++|+..|++.|..+   +..+    ..+..|+
T Consensus       312 l~GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~---~~~~----~~~~~~~  356 (430)
T 3ihm_A          312 GLGDIQATVDPVLGQGANMASYAAWILGEEILAH---SVYD----LRFSEHL  356 (430)
T ss_dssp             ECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHC---SCCS----HHHHHHH
T ss_pred             EecCccccCCCchhhhHHHHHHHHHHHHHHHHhc---CCHH----HHHHHHH
Confidence             999999999999999999999999999988764   3222    2456776

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.68  E-value=2.4e-16  Score=171.42  Aligned_cols=137  Identities=19%  Similarity=0.124  Sum_probs=106.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .+||+||||| +|+++|..|+++|++|+|||+.+.++..+..++++.+++.|..+|++...       ..       |..
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~-------~~-------~~~  157 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFY-------GR-------FCT  157 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHC-------TT-------TTC
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCcccc-------cc-------ccc
Confidence            6899999965 69999999999999999999998766555567888888888888864210       00       110


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe---CCeEEEEE--c-CC--cEEEcCEEEEecCCC
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLL--A-EG--KILSSHLIIDAMGNF  260 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dgv~V~~--~-~g--~~i~ArlVV~ADG~~  260 (546)
                       ..       ...+++..+.+.|.+.+.+.|++++.+++|+++..+   ++.+.|++  . +|  .+++|++||+|||.+
T Consensus       158 -~~-------~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~  229 (497)
T 2bry_A          158 -GT-------LDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGK  229 (497)
T ss_dssp             -TT-------CCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTT
T ss_pred             -cc-------cccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCC
Confidence             00       123667889999999999999999999999999864   34677776  3 55  479999999999999


Q ss_pred             hHHHHHhc
Q 009027          261 SPVVKQIR  268 (546)
Q Consensus       261 S~vr~ql~  268 (546)
                      |.+++..+
T Consensus       230 S~~r~~~~  237 (497)
T 2bry_A          230 FVPEGFTI  237 (497)
T ss_dssp             CCCTTCEE
T ss_pred             cccccccc
Confidence            99986554

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.50  E-value=7.9e-13  Score=137.41  Aligned_cols=70  Identities=23%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH-HHHHhcCC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG  270 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~~~  270 (546)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|++.+| +++|+.||.|+|..|. +.+.++..
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~~  229 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLN  229 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCC
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCCC
Confidence            4578899999999999999999999999999988888888887666 8999999999999987 77777543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.44  E-value=1.3e-11  Score=129.18  Aligned_cols=71  Identities=8%  Similarity=-0.023  Sum_probs=60.0

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCCh-HHHHHhcCCC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFS-PVVKQIRSGR  271 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S-~vr~ql~~~~  271 (546)
                      ..+++..+.+.|.+++.+.|++++.+++|+++..+++. +.|++.+| +++|+.||.|+|..| .+++.++...
T Consensus       169 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~~  241 (405)
T 2gag_B          169 GIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFEL  241 (405)
T ss_dssp             BBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCCC
T ss_pred             ccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCCCC
Confidence            45788899999999999999999999999999887665 45777667 799999999999999 5777776543

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.42  E-value=3.7e-11  Score=124.89  Aligned_cols=70  Identities=11%  Similarity=0.147  Sum_probs=60.9

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChH-HHHHhcCC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG  270 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~~~  270 (546)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++.++ |.+.+| +++|+.||.|+|..|. +.+.++..
T Consensus       144 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~  215 (382)
T 1y56_B          144 GKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIK  215 (382)
T ss_dssp             CEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCC
T ss_pred             eeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCC
Confidence            3578999999999999999999999999999998888887 887666 7999999999999994 67776644

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.37  E-value=1.6e-10  Score=125.54  Aligned_cols=203  Identities=14%  Similarity=0.144  Sum_probs=112.7

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc---CCc--EEEcCEEEEecCCChH-HHHH-hcCCCCC
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHLIIDAMGNFSP-VVKQ-IRSGRKP  273 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---~g~--~i~ArlVV~ADG~~S~-vr~q-l~~~~~~  273 (546)
                      .+++.++...|.+.+.+.|++++.+++|+++..+++.+.|.+.   +|+  +++|+.||.|+|.+|. +.++ ++.....
T Consensus       145 ~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~~  224 (501)
T 2qcu_A          145 WVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPY  224 (501)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCSS
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCccc
Confidence            4799999999999999999999999999999988876777763   465  7999999999999997 4544 5432111


Q ss_pred             CeeeeEEEEEe--eccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEccCC---CC-----CCccH
Q 009027          274 DGVCLVVGSCA--RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP---QA-----GSPKL  343 (546)
Q Consensus       274 ~~~~~~vg~~~--~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~~~~---~~-----~~~~l  343 (546)
                       .+.++-|...  ........ .+++.   .   +  ....+| ++|..++    ...+.+....   .+     .....
T Consensus       225 -~i~p~rG~~~~~~~~~~~~~-~~~~~---~---~--dg~~~~-~~P~~~g----~~~iG~t~~~~~~~~~~~~~~~~~~  289 (501)
T 2qcu_A          225 -GIRLIKGSHIVVPRVHTQKQ-AYILQ---N---E--DKRIVF-VIPWMDE----FSIIGTTDVEYKGDPKAVKIEESEI  289 (501)
T ss_dssp             -CBCCEEEEEEEEECSSSCSC-EEEEE---C---T--TSCEEE-EEEETTT----EEEEECCCEECCSCGGGCCCCHHHH
T ss_pred             -ccccceeEEEEECCCCCCce-EEEee---c---C--CCCEEE-EEEcCCC----cEEEcCCCCCCCCCcCCCCCCHHHH
Confidence             1222222211  11001000 11111   0   0  122344 5676544    2223222110   11     11244


Q ss_pred             HHHHHHHHHhCc-cccccccCcceEeeeeeeeeccccCCC---CCccCCcEEE--eCCCCCCCCCCCCCcchhhHhhHHH
Q 009027          344 EELLERYWDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDSP---LPAAFNRILQ--FGDASGIQSPVSFGGFGSLTRHLGR  417 (546)
Q Consensus       344 ~~l~~~~~~~lp-~~~~~~l~~~~~~~~~~g~~P~~~~~~---~~~~~~rvlL--VGDAA~~v~Plsg~G~g~~lrd~~~  417 (546)
                      +.+++...+.+| .+..     ..+.....|..|......   .+...+.++.  .+|..+.+-.++|+|+-.    ...
T Consensus       290 ~~l~~~~~~~~p~~l~~-----~~v~~~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~Gg~~t~----~~~  360 (501)
T 2qcu_A          290 NYLLNVYNTHFKKQLSR-----DDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTT----YRK  360 (501)
T ss_dssp             HHHHHHHHHHBSSCCCG-----GGCCEEEEEEECCBCCCCSSGGGSCCCCEEEEEEETTEEEEEEEECCCGGG----HHH
T ss_pred             HHHHHHHHHhcCCCCCc-----ccEEEEEEEEeeecCCCCCccccCcCceEEEecccCCCCCeEEEeCccccc----hHH
Confidence            555555556677 4432     222333446777764321   1334566776  677666667777776432    234


Q ss_pred             HHHHHHHHHh
Q 009027          418 LSTGVYEAVR  427 (546)
Q Consensus       418 Lae~I~~Al~  427 (546)
                      +|+.+.+.+.
T Consensus       361 ~Ae~~~~~~~  370 (501)
T 2qcu_A          361 LAEHALEKLT  370 (501)
T ss_dssp             HHHHHHHHHG
T ss_pred             HHHHHHHHHH
Confidence            5665555554

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.31  E-value=3.6e-11  Score=123.48  Aligned_cols=71  Identities=17%  Similarity=0.086  Sum_probs=61.7

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCC--cEEEcCEEEEecCCChH-HHHHh-cCC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG--KILSSHLIIDAMGNFSP-VVKQI-RSG  270 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g--~~i~ArlVV~ADG~~S~-vr~ql-~~~  270 (546)
                      ..+++..+.+.|.+.+++.|++++++++|+++..++++ +.|.+.+|  .+++|+.||.|+|.+|. +.+++ +..
T Consensus       145 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          145 GIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSC
T ss_pred             EEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCC
Confidence            35889999999999999999999999999999988776 88888777  48999999999999994 77777 653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.27  E-value=5.9e-11  Score=125.99  Aligned_cols=63  Identities=14%  Similarity=0.100  Sum_probs=57.9

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCc---eEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGY---SVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t---~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ..+++..+.+.|.+++++.|+++++++   +|+++..++++++ |.+.+|++++|+.||.|+|.+|.
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            457888999999999999999999999   9999999888888 99888888999999999999986

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.27  E-value=3.3e-11  Score=128.09  Aligned_cols=150  Identities=15%  Similarity=0.206  Sum_probs=96.1

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcc------cccCC-----HH---------HHHHHHHcCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ------EWNIS-----RK---------ELLELVESGILV  167 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r------~~~Is-----~~---------~l~~L~~lGl~~  167 (546)
                      .+||||||||| +|+++|+.|+++|++|+||||.+.++.+-      ..+++     ..         ....+...... 
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~-  104 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ-  104 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH-
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH-
Confidence            36999999965 69999999999999999999998754210      00000     00         00001000000 


Q ss_pred             cccchhhhhhccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcE
Q 009027          168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKI  247 (546)
Q Consensus       168 ~~~ie~~i~~~~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~  247 (546)
                        ++..... ..   .+.+....   ....+ ...++..+.+.|.+++.+.|++++.+++|+++..+++++.|++.+| +
T Consensus       105 --~~~~~~~-~~---Gi~~~~~~---~g~~~-~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~  173 (417)
T 3v76_A          105 --DFVALVE-RH---GIGWHEKT---LGQLF-CDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-T  173 (417)
T ss_dssp             --HHHHHHH-HT---TCCEEECS---TTEEE-ESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-E
T ss_pred             --HHHHHHH-Hc---CCCcEEee---CCEEe-eCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-E
Confidence              0000000 00   00000000   00001 1246778999999999999999999999999999999999998777 8


Q ss_pred             EEcCEEEEecCCCh-----------HHHHHhcCC
Q 009027          248 LSSHLIIDAMGNFS-----------PVVKQIRSG  270 (546)
Q Consensus       248 i~ArlVV~ADG~~S-----------~vr~ql~~~  270 (546)
                      ++|+.||.|+|..|           .++++++..
T Consensus       174 i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~  207 (417)
T 3v76_A          174 VDAASLVVASGGKSIPKMGATGLAYRIAEQFGLP  207 (417)
T ss_dssp             EEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCC
T ss_pred             EEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCC
Confidence            99999999999999           577777654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.27  E-value=7.3e-11  Score=123.50  Aligned_cols=68  Identities=9%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh-HHHHHhcC
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS-PVVKQIRS  269 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S-~vr~ql~~  269 (546)
                      .+++..+.+.|.+.+.+.|++++.+++|+++..++++++|.+.++ +++|+.||.|+|.+| .++++++.
T Consensus       149 ~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~  217 (397)
T 2oln_A          149 TIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTNDLLEPLGA  217 (397)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHHHHGGGTC
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHHHhhhcCC
Confidence            578889999999999999999999999999999888888887555 799999999999995 47777764

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.25  E-value=2.2e-11  Score=130.29  Aligned_cols=158  Identities=19%  Similarity=0.204  Sum_probs=97.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcc-----c-ccCCH-HHH-HHHHHcCCCCcccchhhhhhccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ-----E-WNISR-KEL-LELVESGILVEDDIDEATATKFN  180 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r-----~-~~Is~-~~l-~~L~~lGl~~~~~ie~~i~~~~~  180 (546)
                      +||||||||| +|+++|+.|+++|++|+||||.+.++.+-     . .+++. ... +.+..++.... -+...+ ..+.
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~  103 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGR-FLYSAF-SIFN  103 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGG-GGHHHH-HHSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChH-HHHHHH-HhcC
Confidence            6999999965 69999999999999999999987654210     0 01100 000 11122211000 000000 0000


Q ss_pred             CC-ccccc-C-Cccccccccccce----eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCE
Q 009027          181 PN-RCGFE-G-KGEIWVEDILNLG----VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHL  252 (546)
Q Consensus       181 ~~-~v~f~-~-~~~l~~~~~l~~~----V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~Arl  252 (546)
                      .. .+.+. . +.++.. ...+..    -....+.+.|.+++.+.|++++.+++|+++..+++. +.|.+.+|++++|+.
T Consensus       104 ~~~~~~~~~~~G~~~~~-~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~  182 (447)
T 2i0z_A          104 NEDIITFFENLGVKLKE-EDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH  182 (447)
T ss_dssp             HHHHHHHHHHTTCCEEE-CGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred             HHHHHHHHHhcCCceEE-eeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCE
Confidence            00 00000 0 000000 001111    136788899999999999999999999999888777 678887887899999


Q ss_pred             EEEecCCCh-----------HHHHHhcCC
Q 009027          253 IIDAMGNFS-----------PVVKQIRSG  270 (546)
Q Consensus       253 VV~ADG~~S-----------~vr~ql~~~  270 (546)
                      ||.|+|..|           .++++++..
T Consensus       183 VVlAtGg~s~~~~g~tG~g~~la~~~G~~  211 (447)
T 2i0z_A          183 VVIAVGGKSVPQTGSTGDGYAWAEKAGHT  211 (447)
T ss_dssp             EEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred             EEECCCCCcCCCCCCCcHHHHHHHHCCCC
Confidence            999999999           899888764

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.25  E-value=9.5e-11  Score=128.52  Aligned_cols=60  Identities=22%  Similarity=0.319  Sum_probs=52.7

Q ss_pred             CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChH
Q 009027          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ....+.+.|.+.+.+.|++++++++|+++..+++.+. |++.+|++++|++||.|+|+.|.
T Consensus       218 ~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          218 KLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             hHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            3567888899999999999999999999988877654 88888889999999999999995

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.20  E-value=2.7e-09  Score=117.49  Aligned_cols=70  Identities=17%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcC---C--cEEEcCEEEEecCCCh-HHHHHhcCC
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGNFS-PVVKQIRSG  270 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~---g--~~i~ArlVV~ADG~~S-~vr~ql~~~  270 (546)
                      .+++.++...|.+.+.+.|++++.+++|+++..+++++. |.+.+   |  .+++|+.||.|+|.+| .+++.++..
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCC
T ss_pred             eEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCC
Confidence            588999999999999999999999999999999888653 65543   3  3799999999999999 467666543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.18  E-value=1.2e-10  Score=131.11  Aligned_cols=63  Identities=17%  Similarity=0.171  Sum_probs=58.4

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ..+++..+.+.|.+++.+.|++++.+++|+++..++++|.|++.+|.+++|+.||.|+|..|.
T Consensus       412 g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          412 GWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred             eeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence            457899999999999999999999999999999999999999888788999999999999986

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.17  E-value=3.4e-10  Score=116.97  Aligned_cols=70  Identities=10%  Similarity=0.090  Sum_probs=62.1

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH-HHHHhcCC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG  270 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~~~  270 (546)
                      ..+++..+.+.|.+.+++.|++++++++|+++..+++++.|++.+| +++|+.||.|+|.+|. +.+.++..
T Consensus       149 ~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~  219 (381)
T 3nyc_A          149 ADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVR  219 (381)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTCC
T ss_pred             ceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCC
Confidence            3589999999999999999999999999999999999988888766 8999999999999995 67777653

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.16  E-value=2.3e-10  Score=118.83  Aligned_cols=67  Identities=12%  Similarity=0.188  Sum_probs=57.7

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH-HHHHhc
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIR  268 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~  268 (546)
                      .+++..+.+.|.+++.+.|++++.+++|+++..+++++.|+++++ +++|+.||.|+|..|. +...++
T Consensus       146 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g  213 (389)
T 2gf3_A          146 VLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLN  213 (389)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGT
T ss_pred             EEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHHhhhhc
Confidence            477889999999999999999999999999998888888887655 7999999999999986 444444

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.16  E-value=2.8e-10  Score=117.65  Aligned_cols=62  Identities=13%  Similarity=0.061  Sum_probs=55.1

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|++.+| +++|+.||.|+|..|.
T Consensus       144 g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          144 GFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVK  205 (372)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGG
T ss_pred             cEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHH
Confidence            3478889999999999999999999999999998888888888666 5999999999999874

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.15  E-value=4.5e-10  Score=104.39  Aligned_cols=117  Identities=18%  Similarity=0.224  Sum_probs=89.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      +|||+||||| +|+.+|..|++.|.+|+|+|+.+..- .+.                   ..+.     .+       .+
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~-~~~-------------------~~~~-----~~-------~~   48 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKV-KGV-------------------SRVP-----NY-------PG   48 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTT-TTC-------------------SCCC-----CS-------TT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcc-cCc-------------------hhhh-----cc-------CC
Confidence            3899999965 69999999999999999999876110 000                   0000     00       00


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHHHHhc
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR  268 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql~  268 (546)
                           .+    ..++...+.+.+.+.+.+.|++++.+ +++++..+++++.|++++| +++|+.||.|+|..|.+++.++
T Consensus        49 -----~~----~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g  117 (180)
T 2ywl_A           49 -----LL----DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLG  117 (180)
T ss_dssp             -----CT----TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHT
T ss_pred             -----Cc----CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCccccCC
Confidence                 00    12456778889999999999999999 9999988888888888778 8999999999999998887775


Q ss_pred             C
Q 009027          269 S  269 (546)
Q Consensus       269 ~  269 (546)
                      +
T Consensus       118 ~  118 (180)
T 2ywl_A          118 L  118 (180)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.14  E-value=1.4e-10  Score=119.74  Aligned_cols=131  Identities=21%  Similarity=0.311  Sum_probs=87.2

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcccc---------cCCHHHHHHHHHcCCCCcccchhhhhh
Q 009027          110 TFDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEW---------NISRKELLELVESGILVEDDIDEATAT  177 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~---------~Is~~~l~~L~~lGl~~~~~ie~~i~~  177 (546)
                      +|||||||| ++|+++|+.|+++  |++|+|||+...++.. .|         .+.+...+.|.++|+.-.         
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg-~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~---------  148 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG-AWLGGQLFSAMVMRKPADVFLDEVGVPYE---------  148 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT-TTCCBTTCCCEEEETTTHHHHHHHTCCCE---------
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc-cccCCccchhhhcchHHHHHHHHcCCccc---------
Confidence            599999996 4699999999997  9999999998765421 11         111223444555554210         


Q ss_pred             ccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCC--------------------
Q 009027          178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYEN--------------------  236 (546)
Q Consensus       178 ~~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~d--------------------  236 (546)
                                ....+.      ...+...+.+.|.+++.+ .|++++.++.++++..+++                    
T Consensus       149 ----------~~G~~~------~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~r  212 (344)
T 3jsk_A          149 ----------DEGDYV------VVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVR  212 (344)
T ss_dssp             ----------ECSSEE------EESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEE
T ss_pred             ----------ccCCeE------EEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCce
Confidence                      000000      111345677888998888 5899999999999987663                    


Q ss_pred             --eEEEEE----c--------CCcEEEcCEEEEecCCChHHHHH
Q 009027          237 --AAVLLL----A--------EGKILSSHLIIDAMGNFSPVVKQ  266 (546)
Q Consensus       237 --gv~V~~----~--------~g~~i~ArlVV~ADG~~S~vr~q  266 (546)
                        ++++..    .        ++.+|+|++||+|+|+.|++++.
T Consensus       213 V~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~  256 (344)
T 3jsk_A          213 IAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAF  256 (344)
T ss_dssp             EEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCH
T ss_pred             EeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHH
Confidence              222321    1        12479999999999999996543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.13  E-value=2.7e-10  Score=128.53  Aligned_cols=63  Identities=13%  Similarity=0.051  Sum_probs=57.0

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc-EEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~-~i~ArlVV~ADG~~S~  262 (546)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|.+.+|. +++|+.||.|+|..|.
T Consensus       407 g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          407 GWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence            35789999999999999999999999999999999889999887776 8999999999999986

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.11  E-value=3.5e-10  Score=113.70  Aligned_cols=131  Identities=18%  Similarity=0.323  Sum_probs=87.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCCcccchhhhhhc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATK  178 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~~~~~~~r~~~---------Is~~~l~~L~~lGl~~~~~ie~~i~~~  178 (546)
                      +|||+||||| +|+++|..|+++ |++|+||||.+.++.. .|.         +.....+.|.++|+.            
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~-~~~~~~~~~~~~~~~~~~~~l~~~G~~------------  105 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG-AWLGGQLFSAMIVRKPAHLFLDEIGVA------------  105 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT-TTCCSTTCCCEEEETTTHHHHHHHTCC------------
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc-eecCCcchHHHHcCcHHHHHHHHcCCC------------
Confidence            5899999965 699999999997 9999999998765421 110         001112223333321            


Q ss_pred             cCCCcccccCCccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeE-EEEEc---------CC--
Q 009027          179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---------EG--  245 (546)
Q Consensus       179 ~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv-~V~~~---------~g--  245 (546)
                             |...      ..+....+...+...|.+++.+ .|++++.+++|+++..+++.+ .|.+.         ++  
T Consensus       106 -------~~~~------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~  172 (284)
T 1rp0_A          106 -------YDEQ------DTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSC  172 (284)
T ss_dssp             -------CEEC------SSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSC
T ss_pred             -------cccC------CCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCcccc
Confidence                   1000      0000122567788888888876 699999999999999887754 23331         22  


Q ss_pred             ---cEEEcCEEEEecCCChHHHHH
Q 009027          246 ---KILSSHLIIDAMGNFSPVVKQ  266 (546)
Q Consensus       246 ---~~i~ArlVV~ADG~~S~vr~q  266 (546)
                         .+++|+.||.|+|.+|.++..
T Consensus       173 g~~~~i~ad~VV~AtG~~s~~~~~  196 (284)
T 1rp0_A          173 MDPNVMEAKIVVSSCGHDGPFGAT  196 (284)
T ss_dssp             CCCEEEEEEEEEECCCSSSTTTTH
T ss_pred             CceEEEECCEEEECCCCchHHHHH
Confidence               579999999999999977643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.11  E-value=1.2e-10  Score=122.86  Aligned_cols=71  Identities=14%  Similarity=0.200  Sum_probs=55.1

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEE---------EEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh-HHHH-Hhc
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVS---------SICTYENAAVLLLAEGKILSSHLIIDAMGNFS-PVVK-QIR  268 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~---------~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S-~vr~-ql~  268 (546)
                      ..+++..+.+.|.+++.+.|++++++++|+         ++..+++.+.|.+.+| +++|+.||.|+|.+| .+++ +++
T Consensus       167 g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g  245 (405)
T 3c4n_A          167 LTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLG  245 (405)
T ss_dssp             EEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHC
T ss_pred             EEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcC
Confidence            357899999999999999999999999999         8877777776666555 799999999999999 6887 776


Q ss_pred             CCC
Q 009027          269 SGR  271 (546)
Q Consensus       269 ~~~  271 (546)
                      ...
T Consensus       246 ~~~  248 (405)
T 3c4n_A          246 LHT  248 (405)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.10  E-value=5.8e-10  Score=117.82  Aligned_cols=156  Identities=17%  Similarity=0.182  Sum_probs=92.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCC-----C-ccc-chhhhhhccCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGIL-----V-EDD-IDEATATKFNP  181 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~-----~-~~~-ie~~i~~~~~~  181 (546)
                      +||||||||| +|+++|+.|+++|++|+||||.+.++.+  +.++.+....+...+..     . ..+ +...+ ..+..
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~--~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l-~~~~~   80 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRK--ILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSAL-ARYTN   80 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH--HHHGGGGTCCCEESSCCGGGEECSCTTSTHHHH-HHSCH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchh--cEEcCCCeEEccCCccCHHHhccCCHHHHHHHH-HhCCH
Confidence            5899999965 6999999999999999999998765421  00000000000000000     0 000 00000 00000


Q ss_pred             C-ccccc-C-Ccccccccccccee---CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe----CCeEEEEEcCCcEEEcC
Q 009027          182 N-RCGFE-G-KGEIWVEDILNLGV---SPAKLIEIVKKRFISLGGVIFEGYSVSSICTY----ENAAVLLLAEGKILSSH  251 (546)
Q Consensus       182 ~-~v~f~-~-~~~l~~~~~l~~~V---~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~----~dgv~V~~~~g~~i~Ar  251 (546)
                      . .+.+. . +-+.... ..+..+   ++..+.+.|.+.+.+.|++++.+++|+++..+    ++++.|++.++ +++|+
T Consensus        81 ~~~~~~~~~~Gi~~~~~-~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad  158 (401)
T 2gqf_A           81 WDFISLVAEQGITYHEK-ELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCK  158 (401)
T ss_dssp             HHHHHHHHHTTCCEEEC-STTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEES
T ss_pred             HHHHHHHHhCCCceEEC-cCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECC
Confidence            0 00000 0 0000000 001111   56778889999999999999999999999876    56788887666 79999


Q ss_pred             EEEEecCCCh-----------HHHHHhcCC
Q 009027          252 LIIDAMGNFS-----------PVVKQIRSG  270 (546)
Q Consensus       252 lVV~ADG~~S-----------~vr~ql~~~  270 (546)
                      .||.|+|..|           .++++++..
T Consensus       159 ~VVlAtG~~s~p~~g~~G~g~~la~~~G~~  188 (401)
T 2gqf_A          159 NLIVATGGLSMPGLGATPFGYQIAEQFGIP  188 (401)
T ss_dssp             EEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred             EEEECCCCccCCCCCCChHHHHHHHHCCCC
Confidence            9999999999           677887654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.03  E-value=6.1e-08  Score=92.26  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=32.6

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ++||+|||| |+|+++|+.|+++|++|+|+||.+.++
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            589999995 679999999999999999999988764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.02  E-value=2.7e-09  Score=108.77  Aligned_cols=128  Identities=15%  Similarity=0.184  Sum_probs=89.0

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCc-cccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR-CGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~-v~f~  187 (546)
                      +|||+||||| +|+++|..|+++|++|+|+|+.+.++.  .|.-            .++...+.       .+.. ..+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg--~~~~------------~~~~~~~~-------~~~~~~~~~   61 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG--AWQH------------AWHSLHLF-------SPAGWSSIP   61 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSG--GGGG------------SCTTCBCS-------SCGGGSCCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC--cccC------------CCCCcEec-------CchhhhhCC
Confidence            5899999965 699999999999999999999876542  1210            01100000       0000 0011


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChH
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      +.   ..+.......++..+.+.|.+.+.+.|++++.+++|+++..+++.+. |++.++ +++++.||.|+|.+|.
T Consensus        62 ~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A           62 GW---PMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGE  133 (357)
T ss_dssp             SS---CCCCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGG
T ss_pred             CC---CCCCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCC
Confidence            00   00011111245678889999999999999999999999999999998 888777 8999999999998773

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.01  E-value=2.2e-09  Score=118.22  Aligned_cols=153  Identities=14%  Similarity=0.164  Sum_probs=91.6

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcc-----cccCCHHHHHHHHHcCCCCccc------------
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ-----EWNISRKELLELVESGILVEDD------------  170 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r-----~~~Is~~~l~~L~~lGl~~~~~------------  170 (546)
                      .++|||||||| +|+++|+.|+++|++|+||||.+.++..-     ..+....  .....+|+.+..+            
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~--~~~~~~g~~ds~~~~~~~~~~~~~~  197 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGT--KQQTAHGVEDKVEWFIEDAMKGGRQ  197 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSC--HHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCC--HHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            36899999965 69999999999999999999998765321     1111100  1122333322100            


Q ss_pred             ------chhhhh-----hcc-CCCccccc-----CCcc---ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEE
Q 009027          171 ------IDEATA-----TKF-NPNRCGFE-----GKGE---IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSS  230 (546)
Q Consensus       171 ------ie~~i~-----~~~-~~~~v~f~-----~~~~---l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~  230 (546)
                            ++....     .++ ....+.|.     +...   .+.+  .+-.+....+.+.|.+++.+.|++++.+++|++
T Consensus       198 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~--~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~  275 (566)
T 1qo8_A          198 QNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRP--HGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVK  275 (566)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEEC--SSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEE
T ss_pred             CCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeec--CCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEE
Confidence                  000000     000 00001110     0000   0000  011134678889999999999999999999999


Q ss_pred             EEEeC-CeE---EEEEcCCc--EEEcCEEEEecCCChHHHH
Q 009027          231 ICTYE-NAA---VLLLAEGK--ILSSHLIIDAMGNFSPVVK  265 (546)
Q Consensus       231 i~~~~-dgv---~V~~~~g~--~i~ArlVV~ADG~~S~vr~  265 (546)
                      +..++ +.+   ++...+|+  +++|+.||.|+|..|..++
T Consensus       276 l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~  316 (566)
T 1qo8_A          276 LVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKE  316 (566)
T ss_dssp             EEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHH
T ss_pred             EEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHH
Confidence            98877 543   33333665  7999999999999997644

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.97  E-value=2.2e-09  Score=110.06  Aligned_cols=132  Identities=22%  Similarity=0.321  Sum_probs=86.1

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcccc---------cCCHHHHHHHHHcCCCCcccchhhhhh
Q 009027          110 TFDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQEW---------NISRKELLELVESGILVEDDIDEATAT  177 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~---------~Is~~~l~~L~~lGl~~~~~ie~~i~~  177 (546)
                      +|||+|||| ++|+++|..|+++  |++|+|+|+...++.. .|         .+.......|.++|+.-          
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg-~~~~g~~~~~~~~~~~~~~~L~~~Gv~~----------  133 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG-SWLGGQLFSAMVMRKPAHLFLQELEIPY----------  133 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT-TTCCGGGCCCEEEETTTHHHHHHTTCCC----------
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc-ccccCcccchhhhhhHHHHHHHhhCccc----------
Confidence            689999996 5699999999998  9999999998876521 11         01112233333444321          


Q ss_pred             ccCCCcccccCCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeC--C-------eEEEEEc----
Q 009027          178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYE--N-------AAVLLLA----  243 (546)
Q Consensus       178 ~~~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~--d-------gv~V~~~----  243 (546)
                               .....      +....+...+.+.|.+++.+. |++++.+++|+++..++  +       ++++...    
T Consensus       134 ---------~~~g~------~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~  198 (326)
T 2gjc_A          134 ---------EDEGD------YVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQ  198 (326)
T ss_dssp             ---------EECSS------EEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHT
T ss_pred             ---------ccCCC------eEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecc
Confidence                     00000      111124567788899988885 88999999999998763  2       2333211    


Q ss_pred             --------CCcEEEc---------------CEEEEecCCChHHHHHh
Q 009027          244 --------EGKILSS---------------HLIIDAMGNFSPVVKQI  267 (546)
Q Consensus       244 --------~g~~i~A---------------rlVV~ADG~~S~vr~ql  267 (546)
                              ++.++.|               ++||+|+|+.|++.+.+
T Consensus       199 ~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~  245 (326)
T 2gjc_A          199 AHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFC  245 (326)
T ss_dssp             C---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHH
T ss_pred             cccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHH
Confidence                    2357999               99999999999888655

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.97  E-value=5e-09  Score=105.42  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=84.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||+|||| ++|+++|..|+++|+ +|+|+|+....+.   |..+          .     .+     ..       +.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~---~~~~----------~-----~~-----~~-------~~   50 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQ---ITGS----------S-----EI-----EN-------YP   50 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCG---GGGC----------S-----CB-----CC-------ST
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcc---cccc----------c-----cc-----cc-------CC
Confidence            389999996 569999999999999 9999999643221   1000          0     00     00       00


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      +         +...+++..+.+.+.+.+.+.|++++. ++++++..+++.+.|.+.++++++++.||.|+|..+.
T Consensus        51 ~---------~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~  115 (311)
T 2q0l_A           51 G---------VKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK  115 (311)
T ss_dssp             T---------CCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             C---------CcccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC
Confidence            0         112356778888888888888999988 7899999888888888888889999999999997663

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.97  E-value=5.3e-09  Score=101.76  Aligned_cols=125  Identities=14%  Similarity=0.053  Sum_probs=85.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC-CCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~-~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||+||||| +|+.+|..|+++|++|+|||+... .+   .+ ..+       .++-+..   ..+ ..++       .
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G---~~-~~~-------~~~~~~~---~~~-~~~~-------~   60 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM---MP-FLP-------PKPPFPP---GSL-LERA-------Y   60 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT---CC-SSC-------CCSCCCT---TCH-HHHH-------C
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC---cc-cCc-------cccccch---hhH-Hhhh-------c
Confidence            5899999965 699999999999999999999732 11   00 000       0000000   000 0000       0


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEcCEEEEecCCChHHHH
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVVK  265 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv-~V~~~~g~~i~ArlVV~ADG~~S~vr~  265 (546)
                      .        ..+  -++..+.+.|.+.+.+. |++++ +++|+++..+++.+ .|.+.+|++++|+.||.|+|.+|..+.
T Consensus        61 d--------~~g--~~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~  129 (232)
T 2cul_A           61 D--------PKD--ERVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARL  129 (232)
T ss_dssp             C--------TTC--CCHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEE
T ss_pred             c--------CCC--CCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhce
Confidence            0        001  16778899999999887 88888 57999998888775 477777878999999999999886654


Q ss_pred             Hh
Q 009027          266 QI  267 (546)
Q Consensus       266 ql  267 (546)
                      .+
T Consensus       130 ~~  131 (232)
T 2cul_A          130 FL  131 (232)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.96  E-value=6.5e-09  Score=119.65  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=58.3

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEcCEEEEecCCChHH-HHHhcC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPV-VKQIRS  269 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~g~~i~ArlVV~ADG~~S~v-r~ql~~  269 (546)
                      ..+++..+.+.|.+.+.+.|++++++++|+++..+++++ .|.+.+| +++|+.||.|+|..|.. .+.++.
T Consensus       146 g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~  216 (830)
T 1pj5_A          146 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGM  216 (830)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTC
T ss_pred             ceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhCC
Confidence            357899999999999999999999999999999888876 4677666 79999999999999963 444544

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.95  E-value=7.1e-09  Score=114.27  Aligned_cols=150  Identities=13%  Similarity=0.132  Sum_probs=88.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcc-----cccCCHHHHHHHHHcCCCCccc-------------
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ-----EWNISRKELLELVESGILVEDD-------------  170 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r-----~~~Is~~~l~~L~~lGl~~~~~-------------  170 (546)
                      ++|||||||| +|+++|+.|+++|++|+||||.+.++..-     ..+....  .....+|+.+..+             
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~--~~~~~~g~~ds~~~~~~~~~~~g~~~  203 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWT--DQQKAKKITDSPELMFEDTMKGGQNI  203 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSC--HHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCC--HHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            6899999965 69999999999999999999998765321     1111110  1122333321100             


Q ss_pred             -----chhhhh-----hcc-CCCccccc-----CCcc---ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEE
Q 009027          171 -----IDEATA-----TKF-NPNRCGFE-----GKGE---IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSI  231 (546)
Q Consensus       171 -----ie~~i~-----~~~-~~~~v~f~-----~~~~---l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i  231 (546)
                           ++.+..     .++ ....+.|.     ++..   .+.+.  .-......+.+.|.+++.+.|++++.+++|+++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~--~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l  281 (571)
T 1y0p_A          204 NDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPT--GGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEV  281 (571)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEEST--TTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEE
T ss_pred             CCHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecC--CCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEe
Confidence                 000000     000 00001110     0000   00000  001335678899999999999999999999999


Q ss_pred             EEeC-CeE---EEEEcCCc--EEEcCEEEEecCCChHH
Q 009027          232 CTYE-NAA---VLLLAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       232 ~~~~-dgv---~V~~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..++ +.+   ++...+|+  +++|+.||.|+|..|..
T Consensus       282 ~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n  319 (571)
T 1y0p_A          282 LKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKN  319 (571)
T ss_dssp             EECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTC
T ss_pred             EEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcccC
Confidence            8876 443   33332565  79999999999998863

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.91  E-value=8.1e-09  Score=106.38  Aligned_cols=119  Identities=17%  Similarity=0.164  Sum_probs=86.6

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++||+|||| ++|+++|..|+++|++|+|||+.+.++.  .|          ..+  .+.             ..+  ..
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg--~~----------~~~--~~~-------------~~~--~~   64 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGG--QL----------AAL--YPE-------------KHI--YD   64 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH--HH----------HHT--CTT-------------SEE--CC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCC--cc----------ccc--CCC-------------ccc--cc
Confidence            699999996 5699999999999999999999865431  01          000  000             000  00


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                           .+. + ..+++..+.+.|.+.+.+.|++++.+++|+++..+++ .+.|++.+|++++++.||.|+|..|...
T Consensus        65 -----~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~  134 (360)
T 3ab1_A           65 -----VAG-F-PEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEP  134 (360)
T ss_dssp             -----STT-C-SSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCB
T ss_pred             -----CCC-C-CCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCC
Confidence                 000 0 0145677888888888888999999999999988765 6888888888999999999999987443

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.91  E-value=4.9e-09  Score=116.32  Aligned_cols=142  Identities=16%  Similarity=0.178  Sum_probs=90.6

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCccc-c---cCC-HHHHHHHHHcCCCCcccchhhhhhccCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQE-W---NIS-RKELLELVESGILVEDDIDEATATKFNP  181 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~-~---~Is-~~~l~~L~~lGl~~~~~ie~~i~~~~~~  181 (546)
                      .+||||||||| +|+++|+.||++|.+|+|||+.. ..+...+ .   .+. ...++.+..++-.    +......    
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~----~~~~~d~----   91 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGE----MGKAIDA----   91 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCS----HHHHHHH----
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccH----HHHHHHh----
Confidence            36999999965 69999999999999999999884 1221111 1   111 1122233333211    0000000    


Q ss_pred             Cccccc----CCcc-ccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEE
Q 009027          182 NRCGFE----GKGE-IWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLII  254 (546)
Q Consensus       182 ~~v~f~----~~~~-l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV  254 (546)
                      ..+.|.    ...+ .+   .+...+|+..+.+.+.+.+.+. |++++.+ .|+++..+++.+. |.+.+|.+++|+.||
T Consensus        92 ~gi~f~~l~~~kgpav~---~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g~V~GV~t~~G~~i~Ad~VV  167 (641)
T 3cp8_A           92 TGIQFRMLNRSKGPAMH---SPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRSGRAIQAKAAI  167 (641)
T ss_dssp             HEEEEEEECSSSCTTTC---EEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCEEEEEEEE
T ss_pred             cCCchhhcccccCcccc---chhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCCEEEEEEECCCcEEEeCEEE
Confidence            001111    0001 11   1124689999999999999874 8898654 8999988888876 778788899999999


Q ss_pred             EecCCChH
Q 009027          255 DAMGNFSP  262 (546)
Q Consensus       255 ~ADG~~S~  262 (546)
                      .|+|.+|.
T Consensus       168 LATG~~s~  175 (641)
T 3cp8_A          168 LACGTFLN  175 (641)
T ss_dssp             ECCTTCBT
T ss_pred             ECcCCCCC
Confidence            99998754

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.89  E-value=5.4e-09  Score=111.17  Aligned_cols=70  Identities=17%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE---------------eCCeE-EEEEcCCcEE--EcCEEEEecCCCh
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT---------------YENAA-VLLLAEGKIL--SSHLIIDAMGNFS  261 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~---------------~~dgv-~V~~~~g~~i--~ArlVV~ADG~~S  261 (546)
                      ..+++.++.+.|.+++.+.|++++.+++|+++..               +++++ .|.+.+| ++  +|+.||.|+|.+|
T Consensus       176 ~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          176 GFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred             eEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence            3478999999999999999999999999999987               45554 5777667 68  9999999999999


Q ss_pred             H-HHHHhcCC
Q 009027          262 P-VVKQIRSG  270 (546)
Q Consensus       262 ~-vr~ql~~~  270 (546)
                      . +...++..
T Consensus       255 ~~l~~~~g~~  264 (448)
T 3axb_A          255 NRLLNPLGID  264 (448)
T ss_dssp             HHHHGGGTCC
T ss_pred             HHHHHHcCCC
Confidence            7 77776543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.89  E-value=1.1e-08  Score=109.02  Aligned_cols=145  Identities=14%  Similarity=0.065  Sum_probs=88.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCc------ccchh------h
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVE------DDIDE------A  174 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~--rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~------~~ie~------~  174 (546)
                      .+||+||||| +|+++|..|++.|+  +|+|+|+...++.  .|......   -..+++-..      ..+..      .
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG--~~~~~~~~---~~~~~ip~~~~~~~~~~~~~g~~~~~~   80 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG--VWNYTSTL---SNKLPVPSTNPILTTEPIVGPAALPVY   80 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSST--TCSCCSCC---CSCCCSSBCCTTCCCCCBCCSSSCCBC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCC--eecCCCCC---CcccccccccccccccccccccccCCc
Confidence            5899999965 69999999999999  9999999865431  12211000   000000000      00000      0


Q ss_pred             hhhccCCC-------cccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---
Q 009027          175 TATKFNPN-------RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---  244 (546)
Q Consensus       175 i~~~~~~~-------~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---  244 (546)
                      ....|..-       ...|.+   +..+......+++..+.+.|.+.+.+.+..++.+++|+++...++.++|++.+   
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~  157 (447)
T 2gv8_A           81 PSPLYRDLQTNTPIELMGYCD---QSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKA  157 (447)
T ss_dssp             CCCCCTTCBCSSCHHHHSCTT---CCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESST
T ss_pred             cCchhhhhccCCCHHHhccCC---CCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCC
Confidence            00000000       001110   00011111234677888999988887778899999999999888888888865   


Q ss_pred             Cc---EEEcCEEEEecCCChH
Q 009027          245 GK---ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       245 g~---~i~ArlVV~ADG~~S~  262 (546)
                      |+   +++++.||.|+|++|.
T Consensus       158 G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          158 GSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             TCCEEEEEESEEEECCCSSSS
T ss_pred             CCeeEEEEeCEEEECCCCCCC
Confidence            66   7999999999999763

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.89  E-value=1.3e-08  Score=103.42  Aligned_cols=118  Identities=15%  Similarity=0.181  Sum_probs=86.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++||+||||| +|+++|..|+++|++|+|+|+++..+.  .|         . .  ..+.             ..  +..
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg--~~---------~-~--~~~~-------------~~--~~~   55 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG--QL---------T-A--LYPE-------------KY--IYD   55 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCH--HH---------H-H--TCTT-------------SE--ECC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ee---------e-c--cCCC-------------ce--eec
Confidence            6899999964 699999999999999999999865431  01         0 0  0000             00  000


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                      .     +. + ..+++..+.+.|.+.+.+.+++++.+++|+++..+++.+.|.+.++++++++.||.|+|.+|..
T Consensus        56 ~-----~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  123 (335)
T 2zbw_A           56 V-----AG-F-PKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFE  123 (335)
T ss_dssp             S-----TT-C-SSEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEE
T ss_pred             c-----CC-C-CCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCC
Confidence            0     00 0 0144667788888888888999999999999998888888888778889999999999997643

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.88  E-value=7.6e-09  Score=114.50  Aligned_cols=141  Identities=21%  Similarity=0.166  Sum_probs=91.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCccc----ccCCH-HHHHHHHHcCCCCcccchhhhhhccCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQE----WNISR-KELLELVESGILVEDDIDEATATKFNPN  182 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~----~~Is~-~~l~~L~~lGl~~~~~ie~~i~~~~~~~  182 (546)
                      +||||||||| +|+.+|+.+|+.|++|+|||+.. ..+...+    ..+.. ...+.+..+|-.    +......    .
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~----~~~~~d~----~   98 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGE----MGKAIDQ----T   98 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCS----HHHHHHH----H
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhH----HHHHhhh----c
Confidence            6999999965 69999999999999999999974 2221111    11222 223444444421    1100000    0


Q ss_pred             cccccC-----CccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEE
Q 009027          183 RCGFEG-----KGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIID  255 (546)
Q Consensus       183 ~v~f~~-----~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~  255 (546)
                      .+.|..     +...+   .+...+|+..+.+.|.+.+.+ .|++++ +++|+++..+++.+. |.+.+|.+++|+.||.
T Consensus        99 gi~f~~l~~~kGpav~---~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVL  174 (637)
T 2zxi_A           99 GIQFKMLNTRKGKAVQ---SPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVV  174 (637)
T ss_dssp             EEEEEEESTTSCGGGC---EEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEE
T ss_pred             ccceeecccccCcccc---chhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEE
Confidence            011110     01111   122457899999999999988 588985 579999988777663 7777888999999999


Q ss_pred             ecCCChH
Q 009027          256 AMGNFSP  262 (546)
Q Consensus       256 ADG~~S~  262 (546)
                      |+|.+|.
T Consensus       175 ATG~~s~  181 (637)
T 2zxi_A          175 TTGTFLN  181 (637)
T ss_dssp             CCTTCBT
T ss_pred             ccCCCcc
Confidence            9998754

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.88  E-value=1.2e-08  Score=113.24  Aligned_cols=141  Identities=18%  Similarity=0.192  Sum_probs=90.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCccc----ccCCH-HHHHHHHHcCCCCcccchhhhhhccCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQE----WNISR-KELLELVESGILVEDDIDEATATKFNPN  182 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~-~~~~~r~----~~Is~-~~l~~L~~lGl~~~~~ie~~i~~~~~~~  182 (546)
                      +||||||||| +|+++|+.||+.|.+|+|||+.. ..+...+    ..+.. ...+.+..+|-.    +......    .
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~----~~~~~d~----~   99 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGL----MAKAIDQ----A   99 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCS----HHHHHHH----H
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccH----HHHHhhh----c
Confidence            6999999965 69999999999999999999874 2221111    11222 223344444421    1000000    0


Q ss_pred             cccccC-----CccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEcCEEEE
Q 009027          183 RCGFEG-----KGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIID  255 (546)
Q Consensus       183 ~v~f~~-----~~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv-~V~~~~g~~i~ArlVV~  255 (546)
                      .+.|..     +...+.   +...+|+..+.+.|.+.+.+ .|++++ +++|+++..+++.+ .|.+.+|.+++|+.||.
T Consensus       100 gi~f~~l~~~kgpav~~---~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVL  175 (651)
T 3ces_A          100 GIQFRILNASKGPAVRA---TRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVL  175 (651)
T ss_dssp             EEEEEEESTTSCGGGCE---EEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEE
T ss_pred             ccchhhhhcccCccccc---chhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence            011110     011111   12458898999999999988 688985 56899998777765 57777888899999999


Q ss_pred             ecCCChH
Q 009027          256 AMGNFSP  262 (546)
Q Consensus       256 ADG~~S~  262 (546)
                      |+|.+|.
T Consensus       176 ATGt~s~  182 (651)
T 3ces_A          176 TVGTFLD  182 (651)
T ss_dssp             CCSTTTC
T ss_pred             cCCCCcc
Confidence            9999763

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.87  E-value=3.3e-08  Score=107.41  Aligned_cols=56  Identities=20%  Similarity=0.233  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeC-CeEE-EEEc-CCc--EEEcC-EEEEecCCCh
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV-LLLA-EGK--ILSSH-LIIDAMGNFS  261 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~-V~~~-~g~--~i~Ar-lVV~ADG~~S  261 (546)
                      .+.+.|.+++++.|++++++++|+++..++ +.++ |.+. +++  +|+|+ .||.|+|..|
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            788999999999999999999999998874 4332 3332 343  69995 9999999988

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.84  E-value=1.7e-08  Score=102.43  Aligned_cols=112  Identities=17%  Similarity=0.227  Sum_probs=80.5

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++||+|||| ++|+++|..|+++|++|+|+|+....+.   |..+          +     .+     ..+       .+
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~----------~-----~~-----~~~-------~~   57 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQ---IAWS----------E-----EV-----ENF-------PG   57 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGG---GGGC----------S-----CB-----CCS-------TT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcc---cccc----------c-----cc-----ccC-------CC
Confidence            699999996 5699999999999999999999843221   1100          0     00     000       00


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe--CCe-EEEEEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY--ENA-AVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~--~dg-v~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                               +...+++..+.+.+.+.+.+.|++++. .+++++..+  ++. +.|.+.+|++++++.||.|+|..+
T Consensus        58 ---------~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           58 ---------FPEPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADP  123 (325)
T ss_dssp             ---------CSSCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEE
T ss_pred             ---------CCCCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence                     001245677888888888889999887 589888876  444 677777788999999999999865

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.82  E-value=3.9e-08  Score=109.13  Aligned_cols=63  Identities=14%  Similarity=0.180  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeE---EEE-EcCCc--EEEcCEEEEecCCChHHHHH
Q 009027          204 PAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAA---VLL-LAEGK--ILSSHLIIDAMGNFSPVVKQ  266 (546)
Q Consensus       204 ~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv---~V~-~~~g~--~i~ArlVV~ADG~~S~vr~q  266 (546)
                      ...+.+.|.+++.+.| ++++.++.++++..+++.+   .+. +.+|+  +++|+.||.|+|..|.+...
T Consensus       133 g~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~  202 (602)
T 1kf6_A          133 GFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY  202 (602)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSS
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccccC
Confidence            4578889999998888 8999999999998887743   332 24665  79999999999999987543

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.80  E-value=1.3e-07  Score=104.40  Aligned_cols=68  Identities=12%  Similarity=0.064  Sum_probs=54.6

Q ss_pred             eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEc---CCc--EEEcCEEEEecCCChH-HHHHhc
Q 009027          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGNFSP-VVKQIR  268 (546)
Q Consensus       201 ~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~---~g~--~i~ArlVV~ADG~~S~-vr~ql~  268 (546)
                      .+++.++...|.+.+.+.|++++.+++|+++..+++.+ .|.+.   +++  +++|+.||.|+|.+|. +.+.++
T Consensus       184 ~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g  258 (571)
T 2rgh_A          184 RNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNF  258 (571)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCC
T ss_pred             eEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhc
Confidence            47888999999999999999999999999999887764 35542   233  7999999999999985 554443

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.79  E-value=3.5e-08  Score=99.77  Aligned_cols=111  Identities=15%  Similarity=0.196  Sum_probs=80.6

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .+|||+|||| ++|+++|..|+++|++|+|+|+....+.   +..+             .  .+     ..       +.
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~-------------~--~~-----~~-------~~   64 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGL---TAEA-------------P--LV-----EN-------YL   64 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGG---GGGC-------------S--CB-----CC-------BT
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc---cccc-------------c--hh-----hh-------cC
Confidence            3699999996 5699999999999999999998543221   1100             0  00     00       00


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                              . + ..++...+.+.+.+.+.+.|++++. .+++++..+++.+.|.+ ++.+++++.||.|+|..+
T Consensus        65 --------~-~-~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~  126 (319)
T 3cty_A           65 --------G-F-KSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTH  126 (319)
T ss_dssp             --------T-B-SSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEE
T ss_pred             --------C-C-cccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCc
Confidence                    0 0 1245567778888888888999887 78999988888888877 566899999999999765

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.77  E-value=5.6e-08  Score=96.51  Aligned_cols=110  Identities=22%  Similarity=0.298  Sum_probs=81.1

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      +|||+||||| +|+++|..|+++|++|+|+|+......   +               ..              ....|.+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~---~---------------~~--------------~~~~~~~   49 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNR---F---------------AS--------------HSHGFLG   49 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGG---G---------------CS--------------CCCSSTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccc---c---------------ch--------------hhcCCcC
Confidence            5899999965 699999999999999999998753110   0               00              0000000


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      .          ..++...+.+.+.+.+.+. +++++. ++|+++..+++.+.|+++++++++++.||.|+|..+.
T Consensus        50 ~----------~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~  113 (297)
T 3fbs_A           50 Q----------DGKAPGEIIAEARRQIERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE  113 (297)
T ss_dssp             C----------TTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE
T ss_pred             C----------CCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC
Confidence            0          1245677888888888877 456654 5899999998899999988889999999999998753

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.77  E-value=2.4e-08  Score=109.34  Aligned_cols=134  Identities=19%  Similarity=0.212  Sum_probs=85.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++||+||||| +|+++|..|+++|++|+|+|++...+.  .|...       ..-|+..  ...   ...|.   ..|. 
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG--~w~~~-------~~pg~~~--d~~---~~~~~---~~f~-   77 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG--VWYWN-------RYPGARC--DIE---SIEYC---YSFS-   77 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHC-------CCTTCBC--SSC---TTTSS---CCSC-
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ccccc-------CCCceee--ccc---ccccc---cccC-
Confidence            6999999965 699999999999999999999875542  12100       0001100  000   00000   0010 


Q ss_pred             Ccccc-ccccccceeCHHHHHHHHHHHHHhcC--CEEEeCceEEEEEEeCC--eEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          189 KGEIW-VEDILNLGVSPAKLIEIVKKRFISLG--GVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       189 ~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G--~~v~~~t~v~~i~~~~d--gv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                       ..+. .........++..+.+.|...+.+.+  ..++.+++|+++..+++  .+.|++++|++++|+.||.|+|..|.
T Consensus        78 -~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~  155 (542)
T 1w4x_A           78 -EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSV  155 (542)
T ss_dssp             -HHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCC
T ss_pred             -hhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCC
Confidence             0000 00000112456777888877777665  57999999999988764  68899888889999999999998763

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.76  E-value=1.8e-08  Score=102.32  Aligned_cols=117  Identities=17%  Similarity=0.175  Sum_probs=81.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++||+|||| ++|+++|..|+++|++|+|+|+.......    +.          |.+..       ...     .  ..
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~----~g----------g~~~~-------~~~-----~--~~   59 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIA----PG----------GQLTT-------TTD-----V--EN   59 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBC----TT----------CGGGG-------CSE-----E--CC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccC----CC----------ceeee-------ccc-----c--cc
Confidence            589999996 46999999999999999999982110000    00          00000       000     0  00


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                           .+ .+...+++..+.+.|.+.+.+.|++++.++ ++++..+++.++|++ ++.+++++.||.|+|.+|.
T Consensus        60 -----~~-~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~  125 (333)
T 1vdc_A           60 -----FP-GFPEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAK  125 (333)
T ss_dssp             -----ST-TCTTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEEC
T ss_pred             -----CC-CCccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcC
Confidence                 00 011135567788888888888999999887 888887777888887 7778999999999998764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.76  E-value=4.2e-08  Score=100.10  Aligned_cols=111  Identities=20%  Similarity=0.270  Sum_probs=79.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .+||+||||| +|+++|..|+++|++|+|+|+....+.   |...             .  .+     ..       +  
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~-------------~--~~-----~~-------~--   61 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGA---LMTT-------------T--DV-----EN-------Y--   61 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCG---GGSC-------------S--CB-----CC-------S--
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc---eecc-------------c--hh-----hh-------c--
Confidence            6999999975 688999999999999999997633221   1000             0  00     00       0  


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEE-EEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V-~~~~g~~i~ArlVV~ADG~~S  261 (546)
                            + .+...+++..+.+.+.+.+.+.|++++.++ +++++. ++.+.| .++++++++++.||.|+|..+
T Consensus        62 ------~-~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~  126 (335)
T 2a87_A           62 ------P-GFRNGITGPELMDEMREQALRFGADLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGAAA  126 (335)
T ss_dssp             ------T-TCTTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             ------C-CCCCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCc
Confidence                  0 011125567778888888888899999987 888876 556677 777788999999999999865

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.76  E-value=5.3e-08  Score=97.76  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=81.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++||+||||| +|+++|..|+++|++|+|+|+. ..+.   |..          .+            ..+     .+.+
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~gg~---~~~----------~~------------~~~-----~~~~   63 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET-PGGQ---LTE----------AG------------IVD-----DYLG   63 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-TTGG---GGG----------CC------------EEC-----CSTT
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc-CCCe---ecc----------cc------------ccc-----ccCC
Confidence            6999999965 6999999999999999999988 2221   110          00            000     0000


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                           .+     .++...+.+.+.+.+.+.|++++. ++|+++..+++.+.|.+.++.+++++.||.|+|...
T Consensus        64 -----~~-----~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           64 -----LI-----EIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             -----ST-----TEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEE
T ss_pred             -----CC-----CCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCC
Confidence                 00     144667888888888889999988 899999988888899988888999999999999873

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.76  E-value=4.1e-08  Score=107.56  Aligned_cols=133  Identities=17%  Similarity=0.264  Sum_probs=88.7

Q ss_pred             cccEEEEcch-HHHHHHHHHH-hCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALS-FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA-~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      ++|||||||| +|+++|..|+ +.|++|+|+|++...+.  .|...       ..-|...  .+.   ...|..   .|.
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GG--tw~~~-------~ypg~~~--d~~---s~~~~~---~~~   70 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG--TWYWN-------RYPGALS--DTE---SHLYRF---SFD   70 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCT--HHHHC-------CCTTCEE--EEE---GGGSSC---CSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCC--ccccc-------CCCCcee--cCC---cceeee---ccc
Confidence            6899999965 6999999999 99999999999865441  12100       0001100  000   001100   010


Q ss_pred             CCcccc-ccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeCC--eEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d--gv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                        ..+. .+.......++..+.+.|.+.+.+.|+  .++.+++|+++..+++  .+.|++++|++++|+.||.|+|..|
T Consensus        71 --~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s  147 (540)
T 3gwf_A           71 --RDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLS  147 (540)
T ss_dssp             --HHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCC
T ss_pred             --cccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccc
Confidence              0000 000011235677888999999988888  8999999999998876  7889998898999999999999876

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.76  E-value=2.5e-08  Score=100.98  Aligned_cols=118  Identities=19%  Similarity=0.212  Sum_probs=83.7

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      ..+||+||||| +|+++|..|+++|++|+|||+.+.......              |.|..       ....    ..+.
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~g--------------g~~~~-------~~~~----~~~~   75 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAG--------------GQLTT-------TTEI----ENFP   75 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT--------------CGGGG-------SSEE----CCST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcC--------------ccccc-------chhh----cccC
Confidence            36999999965 699999999999999999999752111000              11100       0000    0000


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc---CCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---~g~~i~ArlVV~ADG~~S  261 (546)
                      +         +...+++..+.+.+.+.+.+.|++++.++ ++++..+++.+.+.+.   ++.+++++.||.|+|..+
T Consensus        76 ~---------~~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           76 G---------FPDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             T---------CTTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEE
T ss_pred             C---------CcccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCc
Confidence            0         11124567788889999999999999998 9999888888888874   567899999999999864

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.75  E-value=5.1e-08  Score=99.85  Aligned_cols=41  Identities=17%  Similarity=0.116  Sum_probs=37.6

Q ss_pred             cCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       218 ~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                      .|++|+.+++|+++..+++++.|++.+|++++++.||.|..
T Consensus       122 ~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p  162 (342)
T 3qj4_A          122 SGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMP  162 (342)
T ss_dssp             HTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSC
T ss_pred             cCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCC
Confidence            38999999999999999999999998887799999999986

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.74  E-value=1.2e-07  Score=104.57  Aligned_cols=61  Identities=13%  Similarity=0.110  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC-Ce---EEEEEcCCc--EEEcCEEEEecCCChHH
Q 009027          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA---AVLLLAEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       203 ~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dg---v~V~~~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ....+.+.|.+++.+.|++++.+++|+++..++ +.   +++...+|+  +++|+.||.|+|..|..
T Consensus       253 ~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~  319 (572)
T 1d4d_A          253 VGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKN  319 (572)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTC
T ss_pred             CHHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccC
Confidence            356788999999999999999999999998766 53   333333564  69999999999998864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.74  E-value=2.8e-08  Score=109.10  Aligned_cols=134  Identities=18%  Similarity=0.239  Sum_probs=88.4

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .++|||||||| +|+++|..|++.|++|+|||++...+.  .|...       ..-|...  .+.   ...|.   ..|.
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG--tw~~~-------~ypg~~~--dv~---s~~y~---~~f~   82 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG--VWYWN-------RYPGARC--DVE---SIDYS---YSFS   82 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHC-------CCTTCBC--SSC---TTTSS---CCSC
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ccccC-------CCCCcee--CCC---chhcc---cccc
Confidence            36999999975 688999999999999999999875442  11000       0001100  000   00010   0010


Q ss_pred             CCcccc-ccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeCC--eEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d--gv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                        ..+. .+.......++..+.+.+.+.+.+.|+  .++.+++|+++..+++  .++|++++|++++|+.||.|+|..|
T Consensus        83 --~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s  159 (549)
T 4ap3_A           83 --PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLS  159 (549)
T ss_dssp             --HHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEE
T ss_pred             --cccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCC
Confidence              0000 000011234677888899988888887  8999999999988776  7889998898999999999999765

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.71  E-value=1e-07  Score=98.05  Aligned_cols=136  Identities=18%  Similarity=0.166  Sum_probs=84.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||+||||| +|+++|..|++.|+ +|+|||+.. .+.  .|.-.+..      .-+.+....    ...+...  .+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg--~~~~~~~~------~~~~~~~~~----~~~~g~~--~~~   68 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGH--SFKHWPKS------TRTITPSFT----SNGFGMP--DMN   68 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTH--HHHTSCTT------CBCSSCCCC----CGGGTCC--CTT
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCC--ccccCccc------ccccCcchh----cccCCch--hhh
Confidence            5899999965 69999999999999 999999987 331  11100000      000000000    0000000  000


Q ss_pred             CCccccccc--cccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVED--ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~--~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      .......+.  .....+++..+.+.+.+.+.+.|++++.+++|+++..+++++.|.+.++ +++++.||.|.|..+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           69 AISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYN  143 (369)
T ss_dssp             CSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTT
T ss_pred             hccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCC
Confidence            000000000  0011245677888888888888999999999999988877888888666 599999999999876

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.71  E-value=3.1e-08  Score=108.57  Aligned_cols=59  Identities=10%  Similarity=0.059  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHh-cCCEEEeCceEEEEEE-eCC------eEE-EEEc---CCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFIS-LGGVIFEGYSVSSICT-YEN------AAV-LLLA---EGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~-~~d------gv~-V~~~---~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..+.+.|.+++.+ .|+++++++.|+++.. +++      .+. |.+.   +|+  +++|+.||.|+|..|.+
T Consensus       138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~  210 (540)
T 1chu_A          138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKV  210 (540)
T ss_dssp             ----CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            4566778888887 6899999999999987 434      332 3332   464  79999999999999865

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.71  E-value=6.2e-08  Score=97.76  Aligned_cols=115  Identities=21%  Similarity=0.266  Sum_probs=84.1

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .+||+||||| +|+++|..|+++|++|+|+|+.+..+.  .|       ...                  +....+  ..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG--~~-------~~~------------------~~~~~~--~~   57 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGG--QL-------SAL------------------YPEKYI--YD   57 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH--HH-------HHH------------------CTTSEE--CC
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCc--ee-------hhc------------------CCCceE--ec
Confidence            5899999965 699999999999999999999875431  11       000                  000000  00


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                           .+..  ..+++..+...+.+.+.+.|++++.+++|+++...++ .+.|.+.+++ ++++.||.|+|..|
T Consensus        58 -----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~  123 (332)
T 3lzw_A           58 -----VAGF--PKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGA  123 (332)
T ss_dssp             -----STTC--SSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSC
T ss_pred             -----cCCC--CCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCc
Confidence                 0000  0135678888899999888999999999999988877 7888887775 99999999999954

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.70  E-value=1.4e-07  Score=104.91  Aligned_cols=60  Identities=13%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE---EEEE-cCCc--EEEcCEEEEecCCChHH
Q 009027          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLL-AEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv---~V~~-~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ...+.+.|.+++.+.|++++.++.|+++..+++.+   .+.. .+|+  .++|+.||.|+|..|.+
T Consensus       154 G~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          154 GHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            34788899999998999999999999998876643   3322 3564  79999999999998853

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.70  E-value=1.1e-07  Score=95.87  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=73.5

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      +|||+|||| ++|+++|..|+|+|++|+|+|+....+.                  +.          ..+ +.   |..
T Consensus         6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~------------------~~----------~~~-~~---~~~   53 (304)
T 4fk1_A            6 YIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNR------------------VT----------QNS-HG---FIT   53 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGG------------------GS----------SCB-CC---STT
T ss_pred             CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCe------------------ee----------eec-CC---ccC
Confidence            699999995 5788999999999999999998753220                  00          000 00   000


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      .          -.+++..+.+...+.+.+.+...+....+..+... ++.++|.+.+|+++++|-||-|+|..
T Consensus        54 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~  116 (304)
T 4fk1_A           54 R----------DGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQ  116 (304)
T ss_dssp             C----------TTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCE
T ss_pred             C----------CCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCc
Confidence            0          01345566666667776766654445555555544 44567888889999999999999975

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.66  E-value=7.9e-08  Score=96.82  Aligned_cols=111  Identities=11%  Similarity=0.117  Sum_probs=79.2

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .+||+|||| ++|+++|..|+++|++|+|+|+....+.   +..+             .  .+     ..       +. 
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~-------------~--~~-----~~-------~~-   53 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQ---LTTT-------------T--EV-----EN-------WP-   53 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGG---GGGC-------------S--BC-----CC-------ST-
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCce---Eecc-------------h--hh-----hh-------CC-
Confidence            589999996 5699999999999999999997532221   1000             0  00     00       00 


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                             . +...+.+..+.+.+.+.+.+.|++++.++ ++.+..+++.+.| +.++.+++++.||.|+|..+
T Consensus        54 -------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           54 -------G-DPNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGASA  116 (320)
T ss_dssp             -------T-CCSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCEEE
T ss_pred             -------C-CCCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCc
Confidence                   0 01124456777788888888899999886 8888877777877 66778899999999999865

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.66  E-value=2.1e-07  Score=102.97  Aligned_cols=59  Identities=14%  Similarity=0.212  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeEE-EEE---cCCc--EEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv~-V~~---~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ..+.+.|.+++.+.|+++++++.|+++..+ ++.+. |.+   .+|+  +++|+.||.|+|..|.+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence            568888999999999999999999999886 44332 332   3554  69999999999998753

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.64  E-value=2.3e-07  Score=99.96  Aligned_cols=61  Identities=16%  Similarity=0.175  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc-CCcEEEcCEEEEecCCChHHHH
Q 009027          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGKILSSHLIIDAMGNFSPVVK  265 (546)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~-~g~~i~ArlVV~ADG~~S~vr~  265 (546)
                      ...+.+.|.+++.+.|++++.++++ ++..+++.+. |.+. ++.+++|+.||.|+|..|.+..
T Consensus       118 g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~  180 (472)
T 2e5v_A          118 GREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYE  180 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSS
T ss_pred             HHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCc
Confidence            4577888888888889999999999 9988777552 3332 2235889999999999997643

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.63  E-value=3.3e-08  Score=102.04  Aligned_cols=140  Identities=18%  Similarity=0.140  Sum_probs=82.1

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-----c-----ccc-------------cCCHHHHHHHHHcC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-----E-----QEW-------------NISRKELLELVESG  164 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-----~-----r~~-------------~Is~~~l~~L~~lG  164 (546)
                      .++|||||||| +|+++|+.|+++|++|+||||...+..     .     ..+             .++..+++.+.++.
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g~s~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKKWVELV   84 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCcCCcCcccCcccccccCcccCCCchHHHHHHHHHHHHHHHhC
Confidence            36899999965 699999999999999999999765431     0     001             01122334444431


Q ss_pred             CCCcccchhh----h-------hhcc-CC--CcccccCCcccc-ccc---cccceeCHHHHHHHHHHHHHhcCCEEEeCc
Q 009027          165 ILVEDDIDEA----T-------ATKF-NP--NRCGFEGKGEIW-VED---ILNLGVSPAKLIEIVKKRFISLGGVIFEGY  226 (546)
Q Consensus       165 l~~~~~ie~~----i-------~~~~-~~--~~v~f~~~~~l~-~~~---~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t  226 (546)
                      -.. ..++..    +       ..++ ..  ..+......++. ...   .....+++..+...|.+++.+.|++++. +
T Consensus        85 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~~g~~~~~~~v~p~~~~~~l~~~~~~~G~~i~~-~  162 (363)
T 1c0p_A           85 PTG-HAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPLPSSECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFER-R  162 (363)
T ss_dssp             TTT-SSEEEEEEEEEESSGGGGGGGTTTTTSTTCEECCGGGSSTTCEEEEEEEEECCHHHHHHHHHHHHHHTTCEEEE-C
T ss_pred             ccc-CCeEEECCEEEEecCccchhHHHHHhCCCcEECCHHHCCCceEEEEEecceecHHHHHHHHHHHHHHCCCEEEE-E
Confidence            110 001000    0       0000 00  000000000110 000   0124589999999999999999999998 8


Q ss_pred             eEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          227 SVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       227 ~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      +|+++..+           .+ +|+.||.|+|.+|.
T Consensus       163 ~v~~l~~~-----------~~-~a~~VV~A~G~~s~  186 (363)
T 1c0p_A          163 TVTSLEQA-----------FD-GADLVVNATGLGAK  186 (363)
T ss_dssp             CCSBGGGT-----------CS-SCSEEEECCGGGGG
T ss_pred             EcccHhhc-----------Cc-CCCEEEECCCcchh
Confidence            88876432           12 89999999999984

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.63  E-value=1.2e-07  Score=95.10  Aligned_cols=111  Identities=21%  Similarity=0.222  Sum_probs=79.2

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      +|||+|||| ++|+++|..|+++|++|+|||+.. .+   .|.-         ..+      +     .       .+..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~-gG---~~~~---------~~~------~-----~-------~~~~   49 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF-GG---QILD---------TVD------I-----E-------NYIS   49 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST-TG---GGGG---------CCE------E-----C-------CBTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC-Cc---eecc---------ccc------c-----c-------cccC
Confidence            489999996 569999999999999999998631 11   1100         000      0     0       0000


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC---CeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---NAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~---dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                           .     ...++..+.+.+.+.+.+.|++++.+++++.+..+.   +.+.|.+++|++++++.||.|+|..+
T Consensus        50 -----~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           50 -----V-----PKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKW  115 (310)
T ss_dssp             -----B-----SSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             -----c-----CCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence                 0     012355677788888888899999999999987653   36888888888899999999999865

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.62  E-value=1.2e-07  Score=104.10  Aligned_cols=134  Identities=18%  Similarity=0.179  Sum_probs=86.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++|||||||| +|+++|..|++.|++|+|||++...+.  .|...       .--|+..  ....   ..|.   ..|..
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GG--tw~~~-------~yPg~~~--d~~~---~~y~---~~f~~   71 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG--TWYWN-------RYPGCRL--DTES---YAYG---YFALK   71 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHC-------CCTTCBC--SSCH---HHHC---HHHHT
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ccccC-------CCCceee--cCch---hhcc---cccCc
Confidence            6999999976 688999999999999999999875442  12100       0001000  0000   0000   00000


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeCC--eEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~d--gv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      . .......-....++..+.+.+.+.+.+.|.  .++.+++|+++..+++  .+.|++++|++++|+.||.|+|..|
T Consensus        72 ~-~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s  147 (545)
T 3uox_A           72 G-IIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLS  147 (545)
T ss_dssp             T-SSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCB
T ss_pred             c-cccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCC
Confidence            0 000000001124567788888888888887  8899999999987655  7889998898999999999999765

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.62  E-value=2.7e-07  Score=96.95  Aligned_cols=58  Identities=22%  Similarity=0.399  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChHH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                      ..+-+.|.+.+.+.|++|+.+++|+++..++++++ |.+ +|++++|+.||-|.|.....
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~  254 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATA  254 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHHH
Confidence            34667788888889999999999999999988886 666 57789999999999877543

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.61  E-value=3.1e-07  Score=102.85  Aligned_cols=60  Identities=15%  Similarity=0.186  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe---EEEEE-cCCc--EEEcCEEEEecCCChHH
Q 009027          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       204 ~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg---v~V~~-~~g~--~i~ArlVV~ADG~~S~v  263 (546)
                      ...+...|.+++.+.|+++++++.|+++..+++.   +.+.. .+|+  .++|+.||.|+|..+.+
T Consensus       157 G~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          157 GHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchhh
Confidence            3468889999998899999999999999887663   33322 4565  59999999999998843

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.61  E-value=2e-07  Score=93.52  Aligned_cols=115  Identities=21%  Similarity=0.258  Sum_probs=78.2

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCC-cccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILV-EDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~-~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .|||+|||| ++|+++|..|+++|++|+|+|+....+....              |-+. ...++     .       +.
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~--------------G~~~~~~~i~-----~-------~~   57 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAG--------------GQLTTTTIIE-----N-------FP   57 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTT--------------CGGGGSSEEC-----C-------ST
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccC--------------CCcCChHHhh-----h-------cc
Confidence            699999995 5799999999999999999998764332100              1000 00000     0       00


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      +         +...++...+.+.+.+.+.+.+.++... .+.......+...+.+.++.+++++-||-|+|..
T Consensus        58 g---------~~~~i~~~~l~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~  120 (314)
T 4a5l_A           58 G---------FPNGIDGNELMMNMRTQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGAT  120 (314)
T ss_dssp             T---------CTTCEEHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEE
T ss_pred             C---------CcccCCHHHHHHHHHHHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEccccc
Confidence            0         1112455677777888888888887655 4555666666677777788899999999999974

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.60  E-value=1.8e-07  Score=100.52  Aligned_cols=145  Identities=17%  Similarity=0.164  Sum_probs=86.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHh---CCCe---EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCc
Q 009027          111 FDVIVCGGT-LGIFIATALSF---KGLR---VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR  183 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~---~G~r---VlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~  183 (546)
                      +||+||||| +|+++|..|++   .|++   |+|+|+....+.  .|......  -+...|+-....+-...........
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG--~w~~~~~~--g~~~~g~~~~~~~y~~l~~~~~~~~   78 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG--QWNYTWRT--GLDENGEPVHSSMYRYLWSNGPKEC   78 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCG--GGSCCSCC--SBCTTSSBCCCCCCTTCBCSSCGGG
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCC--EeecCCCC--CccccCCCCcCccccchhhcCChhh
Confidence            699999965 69999999999   9999   999999865441  22211000  0001111000000000000000000


Q ss_pred             ccccCCcccccccc----ccceeCHHHHHHHHHHHHHhcCCE--EEeCceEEEEEEeCC--eEEEEEcC---C--cEEEc
Q 009027          184 CGFEGKGEIWVEDI----LNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYEN--AAVLLLAE---G--KILSS  250 (546)
Q Consensus       184 v~f~~~~~l~~~~~----l~~~V~~~~L~~~L~~~a~~~G~~--v~~~t~v~~i~~~~d--gv~V~~~~---g--~~i~A  250 (546)
                      ..|.+   +..+..    ....+++..+.+.|.+.+.+.|++  ++.+++|+++...++  .+.|++.+   |  .++++
T Consensus        79 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~  155 (464)
T 2xve_A           79 LEFAD---YTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF  155 (464)
T ss_dssp             TCBTT---BCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             cccCC---CCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEc
Confidence            11111   000000    012356788889999988888987  999999999998776  77777754   4  47999


Q ss_pred             CEEEEecCCChH
Q 009027          251 HLIIDAMGNFSP  262 (546)
Q Consensus       251 rlVV~ADG~~S~  262 (546)
                      +.||.|+|..|.
T Consensus       156 d~VVvAtG~~s~  167 (464)
T 2xve_A          156 DYVVCCTGHFST  167 (464)
T ss_dssp             SEEEECCCSSSS
T ss_pred             CEEEECCCCCCC
Confidence            999999997653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.59  E-value=4e-07  Score=97.98  Aligned_cols=61  Identities=20%  Similarity=0.218  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChHHHHH
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~vr~q  266 (546)
                      .+-+.|.+.+++.|++|+.+++|++|..+++.++ |++++|++++||.||.+.+.....++.
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~L  283 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDL  283 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--------
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHh
Confidence            4567788888899999999999999999999887 888899999999999877766544443

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.55  E-value=1.7e-07  Score=99.57  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=38.2

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       220 ~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      ++|+.+++|++|..+++++.|++.+|++++|+.||.|.....
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~  289 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKA  289 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHH
Confidence            599999999999999899999998898899999999987665

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.52  E-value=5e-07  Score=101.05  Aligned_cols=153  Identities=19%  Similarity=0.205  Sum_probs=85.5

Q ss_pred             cccEEEEcc-hHHHHHHHHHH---h-CCCeEEEEcCCCCCCCc----ccc--c--C----------CHHH-HHHHHH--c
Q 009027          110 TFDVIVCGG-TLGIFIATALS---F-KGLRVAIVERNTLKGRE----QEW--N--I----------SRKE-LLELVE--S  163 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA---~-~G~rVlLlEr~~~~~~~----r~~--~--I----------s~~~-l~~L~~--l  163 (546)
                      +|||||||| ++|+++|+.|+   + +|.+|+||||....+..    ..+  +  +          ++.. ++.+..  .
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~  101 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDMM  101 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHHTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHHHhc
Confidence            689999996 57999999999   6 89999999998764321    111  1  2          2221 111111  2


Q ss_pred             CCCCcccchhhhh------hccCCCcccccC--CccccccccccceeCHHHHHHHHHHHHHhc-CC-EEEeCceEEEEEE
Q 009027          164 GILVEDDIDEATA------TKFNPNRCGFEG--KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GG-VIFEGYSVSSICT  233 (546)
Q Consensus       164 Gl~~~~~ie~~i~------~~~~~~~v~f~~--~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~-~v~~~t~v~~i~~  233 (546)
                      ++.++.-++....      .......+.|..  ...+.........++...+.+.|.+++.+. |+ ++++++.|+++..
T Consensus       102 ~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~  181 (643)
T 1jnr_A          102 GLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLK  181 (643)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEECSEEEEEEEE
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccCCCccccCCCcHHHHHHHHHHHHhcCCCcEEEecCEEEEEEE
Confidence            2322211110000      000000111210  001110000001123345677888888877 99 9999999999988


Q ss_pred             eCC---eEE-EE---EcCCc--EEEcCEEEEecCCChH
Q 009027          234 YEN---AAV-LL---LAEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       234 ~~d---gv~-V~---~~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      +++   .+. |.   +.+|+  +++|+.||.|+|..|.
T Consensus       182 ~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~  219 (643)
T 1jnr_A          182 DNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATL  219 (643)
T ss_dssp             CTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             cCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccc
Confidence            766   442 22   24554  6999999999999885

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.52  E-value=3.3e-07  Score=96.47  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ..+-+.|.+.+.+.|++|+.+++|+++..+++++ |. .+|++++||.||-|.|....
T Consensus       189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V~-~~g~~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          189 KAVIDELERIIMENKGKILTRKEVVEINIEEKKV-YT-RDNEEYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-EE-TTCCEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-EE-eCCcEEEeCEEEECCCHHHH
Confidence            3566778888888999999999999999888888 64 57778999999999997754

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.51  E-value=1.2e-07  Score=101.13  Aligned_cols=143  Identities=13%  Similarity=0.077  Sum_probs=84.4

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCC-----CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKG-----LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN  182 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G-----~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~  182 (546)
                      ..||||||||| +|+++|..|+++|     ++|+|||+.+..+......+.        ...+ +..-++.+.. ...+.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~--------~~~~-~~~~~~~l~~-~~~p~   98 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVS--------QSEL-QISFLKDLVS-LRNPT   98 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCS--------SCBC-SSCTTSSSST-TTCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCC--------CCcC-Ccchhhcccc-ccCCC
Confidence            36999999965 6999999999999     999999999865522110000        0000 0000000000 00000


Q ss_pred             -ccccc----CCcccc-ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe---CCe--EEEEEcCCc----E
Q 009027          183 -RCGFE----GKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENA--AVLLLAEGK----I  247 (546)
Q Consensus       183 -~v~f~----~~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~---~dg--v~V~~~~g~----~  247 (546)
                       ...|.    ....+. ....-.....+..+.+.|...+.+.+++++.+++|++++..   ++.  +.|.+.++.    +
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~  178 (463)
T 3s5w_A           99 SPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELV  178 (463)
T ss_dssp             CTTSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEE
T ss_pred             CCCChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEE
Confidence             00110    000000 00000122456778888888888888999999999999876   333  367666664    8


Q ss_pred             EEcCEEEEecCCCh
Q 009027          248 LSSHLIIDAMGNFS  261 (546)
Q Consensus       248 i~ArlVV~ADG~~S  261 (546)
                      ++++.||.|+|...
T Consensus       179 ~~~d~lVlAtG~~p  192 (463)
T 3s5w_A          179 RTTRALVVSPGGTP  192 (463)
T ss_dssp             EEESEEEECCCCEE
T ss_pred             EEeCEEEECCCCCC
Confidence            99999999999743

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.51  E-value=4.7e-07  Score=98.65  Aligned_cols=112  Identities=21%  Similarity=0.246  Sum_probs=81.1

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      ..|||+|||| ++|+++|..|+++|++|+|+|+.. .+   .|.-         ..+      ++     .       +.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~-GG---~~~~---------~~~------~~-----~-------~~  259 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF-GG---QVLD---------TVD------IE-----N-------YI  259 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST-TG---GGTT---------CSC------BC-----C-------BT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC-CC---cccc---------ccc------cc-----c-------cC
Confidence            4799999996 569999999999999999999631 11   1100         000      00     0       00


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC---CeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---NAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~---dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      +     .+     ..+...+.+.+.+.+.+.|++++.+++|+++..+.   +.+.|++++|.+++++.||.|+|..+
T Consensus       260 ~-----~~-----~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          260 S-----VP-----KTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKW  326 (521)
T ss_dssp             T-----BS-----SBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             C-----CC-----CCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence            0     00     13456778888888888999999999999987542   36888888888999999999999865

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.50  E-value=2.4e-07  Score=97.67  Aligned_cols=44  Identities=16%  Similarity=0.100  Sum_probs=38.5

Q ss_pred             HHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       215 a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                      +.+.| +|+.+++|+++..++++++|++.+|++++|+.||.|.|.
T Consensus       214 ~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~  257 (431)
T 3k7m_X          214 SQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPM  257 (431)
T ss_dssp             HTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCG
T ss_pred             HhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCc
Confidence            33446 999999999999888899999988888999999999993

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.44  E-value=7e-07  Score=100.04  Aligned_cols=59  Identities=17%  Similarity=0.125  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhc--CCEEEeCceEEEEEEeCC---eE---EEE-EcCCc--EEEcCEEEEecCCChH
Q 009027          204 PAKLIEIVKKRFISL--GGVIFEGYSVSSICTYEN---AA---VLL-LAEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       204 ~~~L~~~L~~~a~~~--G~~v~~~t~v~~i~~~~d---gv---~V~-~~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ...+...|.+++++.  |+++++++.++++..+++   .+   .+. ..+|+  .|+|+.||.|+|..+.
T Consensus       165 G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~  234 (662)
T 3gyx_A          165 GESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN  234 (662)
T ss_dssp             ETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence            345778888888887  999999999999988766   33   222 23454  6999999999998774

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.43  E-value=1.6e-06  Score=87.33  Aligned_cols=111  Identities=22%  Similarity=0.203  Sum_probs=69.7

Q ss_pred             CCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       108 ~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      +.+|||+|||| ++|+++|..|+++|++|+|+||..+.+..  .+           .+-     +.     .       +
T Consensus         4 e~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~--~~-----------~~~-----i~-----~-------~   53 (312)
T 4gcm_A            4 EIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQM--AN-----------TEE-----VE-----N-------F   53 (312)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGG--GG-----------CSC-----BC-----C-------S
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCee--ec-----------ccc-----cC-----C-------c
Confidence            34799999995 57999999999999999999987543311  00           000     00     0       0


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      .+..          .+....+.........+.+..+..+..+..... .....+ ..+++++++|.||-|+|..
T Consensus        54 p~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~d~liiAtGs~  115 (312)
T 4gcm_A           54 PGFE----------MITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDK-GEYKVI-NFGNKELTAKAVIIATGAE  115 (312)
T ss_dssp             TTCS----------SBCHHHHHHHHHHHHHHTTCEEEECCCCEEEEC-SSCEEE-ECSSCEEEEEEEEECCCEE
T ss_pred             CCcc----------ccchHHHHHHHHHHHhhccccccceeeeeeeee-ecceee-ccCCeEEEeceeEEcccCc
Confidence            0000          123345555556666667777777766554332 233333 3467799999999999964

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.43  E-value=1.7e-06  Score=86.33  Aligned_cols=109  Identities=16%  Similarity=0.182  Sum_probs=76.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEE-EcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAI-VERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlL-lEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      ++||+||||| +|+++|..|+++|++|+| +||....+.   |..+          .             ..    ..+.
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~---~~~~----------~-------------~~----~~~~   53 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQ---ITSS----------S-------------EI----ENYP   53 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGG---GGGC----------S-------------CB----CCST
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCce---eeee----------c-------------ee----ccCC
Confidence            6999999965 699999999999999999 999443221   1000          0             00    0000


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC--CeEEEEEc-CCcEEEcCEEEEecCCC
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAVLLLA-EGKILSSHLIIDAMGNF  260 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dgv~V~~~-~g~~i~ArlVV~ADG~~  260 (546)
                      +         +...++...+...+.+.+.+.|++++.+ +++++ .++  +.+.|.+. ++ +++++.||-|.|..
T Consensus        54 ~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           54 G---------VAQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSA  117 (315)
T ss_dssp             T---------CCSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEE
T ss_pred             C---------CCCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCC
Confidence            0         0112456778888888888899999888 88888 776  67775343 34 89999999999973

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.40  E-value=2.9e-08  Score=101.92  Aligned_cols=51  Identities=16%  Similarity=0.247  Sum_probs=42.3

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ..+++..+.+.|.+++++.|+++++ ++|+++...+           .++|+.||.|+|.+|.
T Consensus       137 ~~v~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-----------~~~a~~VV~A~G~~s~  187 (351)
T 3g3e_A          137 LILEGKNYLQWLTERLTERGVKFFQ-RKVESFEEVA-----------REGADVIVNCTGVWAG  187 (351)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-----------HTTCSEEEECCGGGGG
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-----------cCCCCEEEECCCcChH
Confidence            4589999999999999999999988 8887653221           2689999999999984

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.39  E-value=1.7e-07  Score=100.31  Aligned_cols=139  Identities=18%  Similarity=0.073  Sum_probs=78.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      +|||+||||| +|+++|..|+++|++|+|+|+....+....++. ..+...+...++++     .+. .......+.  +
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~gG~~~~~g~-~psk~ll~~~~~~~-----~~~-~~~~~~g~~--~   73 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGC-IPSKALLRNAELVH-----IFT-KDAKAFGIS--G   73 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCTTHHHHHHSH-HHHHHHHHHHHHHH-----HHH-HHTTTTTEE--E
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcccccCc-hhhHHHHHHHHHHH-----HHH-HHHHhcCCC--C
Confidence            5899999965 689999999999999999999844321110000 01112222222211     000 001000010  0


Q ss_pred             Cccccccccc---cceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCCChH
Q 009027          189 KGEIWVEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSP  262 (546)
Q Consensus       189 ~~~l~~~~~l---~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~i~ArlVV~ADG~~S~  262 (546)
                      ...+..+...   ...  ...+.+.+.+.+.+.|++++.++.+.   .+++.+.|.+.+|  ++++++.||.|+|..+.
T Consensus        74 ~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~  147 (464)
T 2a8x_A           74 EVTFDYGIAYDRSRKV--AEGRVAGVHFLMKKNKITEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAIIATGSSTR  147 (464)
T ss_dssp             CCEECHHHHHHHHHHH--HHHHHHHHHHHHHHTTCEEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEEECCCEEEC
T ss_pred             CCccCHHHHHHHHHHH--HHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEEECCCCCCC
Confidence            0000000000   000  12355566777777899999887653   4566788888777  68999999999998774

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.37  E-value=3.6e-07  Score=97.83  Aligned_cols=143  Identities=20%  Similarity=0.196  Sum_probs=77.3

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-Cccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~-~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      .+|||+||||| +|+++|..|++.|++|+|||+.+..+ ....+. +....  .+....++     +.+. ..+....+.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~--l~~~~~~~-----~~~~-~~~~~~g~~   76 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKA--LLHSSHMY-----HEAK-HSFANHGVK   76 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHH--HHHHHHHH-----HHHH-HTHHHHTEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHH--HHHHHHHH-----HHHH-HHHHhcCcc
Confidence            36999999965 68899999999999999999985433 211111 11111  11100000     0000 000000000


Q ss_pred             ccCCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCCChH
Q 009027          186 FEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSP  262 (546)
Q Consensus       186 f~~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~i~ArlVV~ADG~~S~  262 (546)
                      +.. .....+...... --...+.+.+.+.+.+.|++++.++.+.   .+++.+.|.+++|  .+++++.||.|+|..+.
T Consensus        77 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~  152 (470)
T 1dxl_A           77 VSN-VEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF---VSPSEISVDTIEGENTVVKGKHIIIATGSDVK  152 (470)
T ss_dssp             ESC-EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---EETTEEEECCSSSCCEEEECSEEEECCCEEEC
T ss_pred             cCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCEEEEEeCCCceEEEEcCEEEECCCCCCC
Confidence            000 000000000000 0012344455666667799999998654   4667788877677  68999999999998764


Q ss_pred             H
Q 009027          263 V  263 (546)
Q Consensus       263 v  263 (546)
                      +
T Consensus       153 ~  153 (470)
T 1dxl_A          153 S  153 (470)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.35  E-value=8.9e-07  Score=95.37  Aligned_cols=58  Identities=19%  Similarity=0.306  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                      .+.+.+.+.+++.|++++.+++|+++..+++++.|.+++|+++.|+.||.|.|..+..
T Consensus       233 ~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          233 DLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNT  290 (484)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCC
Confidence            4667778888888999999999999998888888999888899999999999986543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.35  E-value=3.6e-07  Score=98.39  Aligned_cols=141  Identities=21%  Similarity=0.144  Sum_probs=75.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +||||||||| +|+++|..|++.|++|+|||+....+. ...+...+ +...+....++.  .++..  ..+   .+.+.
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p-sk~ll~~~~~~~--~~~~~--~~~---gi~~~   77 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIP-SKALLHNAAVID--EVRHL--AAN---GIKYP   77 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHH-HHHHHHHHHHHH--HHHHG--GGG---TCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccc-hHHHHHHHHHHH--HHHHH--HhC---CcccC
Confidence            6999999965 688999999999999999999654331 10000001 111111111110  00000  000   01110


Q ss_pred             CCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC------------cEEEcCEEE
Q 009027          188 GKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG------------KILSSHLII  254 (546)
Q Consensus       188 ~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g------------~~i~ArlVV  254 (546)
                      . ..+..+...... --...+.+.+.+.+.+.|++++.++.+.   .+++.+.|.+.+|            .+++++.||
T Consensus        78 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lV  153 (482)
T 1ojt_A           78 E-PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCI  153 (482)
T ss_dssp             C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred             C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcCEEE
Confidence            0 000000000000 0002233445566677899999887654   4566777776555            579999999


Q ss_pred             EecCCChH
Q 009027          255 DAMGNFSP  262 (546)
Q Consensus       255 ~ADG~~S~  262 (546)
                      .|+|..+.
T Consensus       154 iAtGs~p~  161 (482)
T 1ojt_A          154 IAAGSRVT  161 (482)
T ss_dssp             ECCCEEEC
T ss_pred             ECCCCCCC
Confidence            99998753

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.32  E-value=5.9e-06  Score=88.73  Aligned_cols=56  Identities=13%  Similarity=0.071  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          206 KLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       206 ~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      .+-+.|.+.+.+.| ++|+.+++|++|..+++++.|++.+|++++|+.||.|.|...
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHH
Confidence            45566777777788 899999999999988888999988888899999999999653

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.32  E-value=2.3e-06  Score=91.46  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=35.9

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEE---cCCcEEEcCEEEEecCCCh
Q 009027          219 GGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       219 G~~v~~~t~v~~i~~~~dgv~V~~---~~g~~i~ArlVV~ADG~~S  261 (546)
                      |++|+.+++|++|..+++++.|++   .+|++++|+.||.|.+...
T Consensus       249 g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~  294 (478)
T 2ivd_A          249 GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHA  294 (478)
T ss_dssp             GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHH
T ss_pred             hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHH
Confidence            679999999999998888888887   6777899999999998764

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.30  E-value=4e-07  Score=97.79  Aligned_cols=140  Identities=19%  Similarity=0.157  Sum_probs=76.0

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||+|||| ++|+++|..|+++|++|+|||+....+. ...... ..+...+...+++.     .+. ..+....+.+.
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~-~psk~l~~~~~~~~-----~~~-~~~~~~gi~~~   77 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGC-IPSKALLNNSHLFH-----QMH-TEAQKRGIDVN   77 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSH-HHHHHHHHHHHHHH-----HHH-HTSGGGTEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceecc-HHHHHHHHHHHHHH-----HHH-HHHHhcCcccC
Confidence            699999996 5699999999999999999999654431 100000 01111121111110     000 00000001000


Q ss_pred             CCcccccccc---ccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cE------EEcCEEEEe
Q 009027          188 GKGEIWVEDI---LNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KI------LSSHLIIDA  256 (546)
Q Consensus       188 ~~~~l~~~~~---l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~------i~ArlVV~A  256 (546)
                      ....+..+..   ....  ...+...+.+.+.+.|++++.++.+.   .+++.+.|.+.+|  ++      ++++.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViA  152 (478)
T 1v59_A           78 GDIKINVANFQKAKDDA--VKQLTGGIELLFKKNKVTYYKGNGSF---EDETKIRVTPVDGLEGTVKEDHILDVKNIIVA  152 (478)
T ss_dssp             SCEEECHHHHHHHHHHH--HHHHHHHHHHHHHHTTCEEEESEEEE---SSSSEEEEECCTTCTTCCSSCEEEEEEEEEEC
T ss_pred             CCCccCHHHHHHHHHHH--HHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCeEEEEecCCCcccccccceEEeCEEEEC
Confidence            0000000000   0000  11334445666677899999998764   2566788877666  56      999999999


Q ss_pred             cCCCh
Q 009027          257 MGNFS  261 (546)
Q Consensus       257 DG~~S  261 (546)
                      +|..+
T Consensus       153 tGs~p  157 (478)
T 1v59_A          153 TGSEV  157 (478)
T ss_dssp             CCEEE
T ss_pred             cCCCC
Confidence            99876

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.23  E-value=3.2e-06  Score=90.18  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCC
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      .|-+.|.+.+.+.|++|+.+++|++|..++++ +.|++ ++.+++|+.||-|.+..
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPAS  289 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHH
Confidence            35667777788889999999999999887777 88876 55579999999998754

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.22  E-value=1e-05  Score=87.73  Aligned_cols=44  Identities=14%  Similarity=0.095  Sum_probs=39.6

Q ss_pred             cCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       218 ~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      .|++|+.+++|++|..++++++|.+.+|++++||.||.|.+...
T Consensus       225 lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          225 LGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred             cCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence            37899999999999988888999988888999999999999765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.22  E-value=1e-06  Score=93.95  Aligned_cols=135  Identities=19%  Similarity=0.092  Sum_probs=75.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||+||||| +|+++|..|++.|++|+|||+....+....+. +....  .+....+     .+.+  ..+....+.+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~gG~~~~~g~~p~k~--l~~~~~~-----~~~~--~~~~~~g~~~~   73 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKA--LISASHR-----YEQA--KHSEEMGIKAE   73 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHH--HHHHHHH-----HHHH--HTCGGGTEECC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCcCcCcCchhhHH--HHHHHHH-----HHHH--HHHHhcCcccC
Confidence            6899999965 68899999999999999999984432111111 11111  1110000     0000  00000001110


Q ss_pred             CCccccccccccceeCH-----HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSP-----AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~-----~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-~~i~ArlVV~ADG~~S  261 (546)
                      . .....+.    .+.+     ..+.+.+.+.+.+.|++++.++.+.   .+++.+.|.+.+| ++++++.||.|+|..+
T Consensus        74 ~-~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~i~~d~lViATGs~p  145 (455)
T 1ebd_A           74 N-VTIDFAK----VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF---VDANTVRVVNGDSAQTYTFKNAIIATGSRP  145 (455)
T ss_dssp             S-CEECHHH----HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE---EETTEEEEEETTEEEEEECSEEEECCCEEE
T ss_pred             C-CccCHHH----HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCeEEEEeCCCcEEEEeCEEEEecCCCC
Confidence            0 0000000    0111     1244455667777899999998653   4677888888777 6899999999999764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.15  E-value=1.2e-05  Score=83.80  Aligned_cols=106  Identities=17%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -+|+||||| .|+-+|..|++.|.+|.|+|+.+.+..                                          .
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------~  183 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP------------------------------------------G  183 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh------------------------------------------c
Confidence            469999975 699999999999999999998652110                                          0


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH--HHHHh
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI  267 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~--vr~ql  267 (546)
                                  ..+..+.+.+.+.+++.|++++.+++++++..+++++.|.+++|+++.|+.||.|.|..+.  +.+.+
T Consensus       184 ------------~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~  251 (384)
T 2v3a_A          184 ------------LLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAA  251 (384)
T ss_dssp             ------------TSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHT
T ss_pred             ------------ccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHC
Confidence                        0012344566777778899999999999998888888898888889999999999998764  45555


Q ss_pred             cCC
Q 009027          268 RSG  270 (546)
Q Consensus       268 ~~~  270 (546)
                      +..
T Consensus       252 g~~  254 (384)
T 2v3a_A          252 GLA  254 (384)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            543

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.14  E-value=1.1e-05  Score=85.94  Aligned_cols=41  Identities=10%  Similarity=-0.022  Sum_probs=36.9

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       220 ~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      ++|+.+++|++|..+++++.|++.+| +++|+.||-|.+...
T Consensus       249 ~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~  289 (475)
T 3lov_A          249 SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQ  289 (475)
T ss_dssp             CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHH
T ss_pred             CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHH
Confidence            69999999999999999999998888 799999999988653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.11  E-value=2.4e-06  Score=91.62  Aligned_cols=142  Identities=19%  Similarity=0.175  Sum_probs=73.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||+||||| +|+++|..|+++|++|+|||+.+..+. ...+...+ +...+....++     +......+....+.. 
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~P-sk~l~~~~~~~-----~~~~~~~~~~~g~~~-   78 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIP-SKALLNNSHYY-----HMAHGTDFASRGIEM-   78 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHH-HHHHHHHHHHH-----HHHHSSHHHHTTEEE-
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccc-hHHHHHHHHHH-----HHhhhhhHhhCcccc-
Confidence            6999999965 688999999999999999999864431 11111001 00011100000     000000000000000 


Q ss_pred             CCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC-C-cEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-G-KILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-g-~~i~ArlVV~ADG~~S  261 (546)
                      +......+...... --...+...+.+.+.+.|++++.++.+.   .+++.+.|.+.+ + ++++++.||.|+|..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p  152 (474)
T 1zmd_A           79 SEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKI---TGKNQVTATKADGGTQVIDTKNILIATGSEV  152 (474)
T ss_dssp             SCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---EETTEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ecCCEEEEEecCCCcEEEEeCEEEECCCCCC
Confidence            00000000000000 0011233344566677899999886532   356778888766 4 5799999999999765

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.10  E-value=3.8e-06  Score=89.10  Aligned_cols=108  Identities=16%  Similarity=0.286  Sum_probs=69.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~--rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .+|||||||| +|+++|..|+++|+  +|+|+|+.+.....+. .++                       ..+-..... 
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-~l~-----------------------~~~~~~~~~-   58 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLP-PLS-----------------------KAYLAGKAT-   58 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSG-GGG-----------------------TTTTTTCSC-
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCC-CCc-----------------------HHHhCCCCC-
Confidence            5899999965 69999999999999  7999998764321110 000                       000000000 


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                        ...+.        +.       +.+.+.+.|++++.+++|+.++.++.  .|.+++|++++++.||.|+|..+
T Consensus        59 --~~~~~--------~~-------~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           59 --AESLY--------LR-------TPDAYAAQNIQLLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLATGGRP  114 (431)
T ss_dssp             --SGGGB--------SS-------CHHHHHHTTEEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             --hHHhc--------cc-------CHHHHHhCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcCCCCc
Confidence              00000        00       11233457899999999998875444  56667788999999999999865

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.05  E-value=7.3e-06  Score=88.55  Aligned_cols=58  Identities=10%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                      .+.+.+.+.+++.|++++.+++|+++..+++++.|.+.+|+++.|+.||-|.|..+..
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            4567788888889999999999999988777788888788899999999999987654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.04  E-value=3.7e-05  Score=81.39  Aligned_cols=43  Identities=21%  Similarity=0.155  Sum_probs=37.4

Q ss_pred             hcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCC
Q 009027          217 SLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       217 ~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      +.|++|+.+++|++|..++++ +.|++ ++++++||.||.|.+..
T Consensus       224 ~lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~  267 (453)
T 2yg5_A          224 ALGDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPN  267 (453)
T ss_dssp             HHGGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGG
T ss_pred             hcCCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHH
Confidence            347899999999999999888 88876 67789999999999875

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.01  E-value=1.6e-05  Score=90.53  Aligned_cols=41  Identities=15%  Similarity=0.034  Sum_probs=37.7

Q ss_pred             cCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       218 ~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                      .|++|+.+++|++|..++++++|++.+|++++|+.||.|..
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P  582 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP  582 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCC
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCC
Confidence            47899999999999998899999998888999999999985

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.00  E-value=5.1e-06  Score=89.07  Aligned_cols=34  Identities=35%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      +|||+||||| +|+++|..|+++|++|+||||.+.
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   37 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            6999999965 688999999999999999999873

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.98  E-value=9.5e-06  Score=86.81  Aligned_cols=139  Identities=17%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-ccccc-CCHHHHHHHHHcCCCCcccchhhh--hhccCCCcc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWN-ISRKELLELVESGILVEDDIDEAT--ATKFNPNRC  184 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i--~~~~~~~~v  184 (546)
                      +|||+||||| +|+++|..|++.|++|+|||+.+..+. ...++ +....  .+....+     .+...  ...+.   +
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~--l~~~~~~-----~~~~~~~~~~~g---~   71 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKA--LLHATHL-----YHDAHANFARYG---L   71 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHH--HHHHHHH-----HHHHHHTHHHHT---E
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHH--HHHHHHH-----HHHHHHHHHhcC---c
Confidence            6999999965 688999999999999999999854431 11000 11111  1100000     00000  00000   0


Q ss_pred             cccCCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCCCh
Q 009027          185 GFEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS  261 (546)
Q Consensus       185 ~f~~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~i~ArlVV~ADG~~S  261 (546)
                      .+.....+..+...... --...+...+.+.+.+.|++++.++.+.   .+++.+.|.+.+|  .+++++.||.|+|...
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~---i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p  148 (468)
T 2qae_A           72 MGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF---ETAHSIRVNGLDGKQEMLETKKTIIATGSEP  148 (468)
T ss_dssp             ECGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE---EETTEEEEEETTSCEEEEEEEEEEECCCEEE
T ss_pred             ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---eeCCEEEEEecCCceEEEEcCEEEECCCCCc
Confidence            00000000000000000 0001233344556667799999887542   4567888888777  6899999999999743

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.98  E-value=2.2e-05  Score=84.05  Aligned_cols=133  Identities=16%  Similarity=0.051  Sum_probs=71.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-ccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      +|||+||||| +|+++|..|+++|++|+||||....+. ...++ +....+  +.....     .+...........+.+
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l--~~~a~~-----~~~~~~~~~~~~~~~~   76 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTV--REVIQT-----AWRLTNIANVKIPLDF   76 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHH--HHHHHH-----HHHHHHHHCSCCCCCH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHH--HHHHHH-----HHHHHhcccCCCCcCH
Confidence            6999999965 688999999999999999997664431 11000 100000  000000     0000000000000000


Q ss_pred             cCCccccccccccceeCHHHHH--HHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcE--EEcCEEEEecCCC
Q 009027          187 EGKGEIWVEDILNLGVSPAKLI--EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKI--LSSHLIIDAMGNF  260 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~--~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~--i~ArlVV~ADG~~  260 (546)
                              +......-.-..+.  ..+.+.+.+.|++++.+ ++..+  +++.+.|...+|++  ++++.||.|.|..
T Consensus        77 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~i--d~~~~~V~~~~g~~~~~~~d~lviAtG~~  143 (466)
T 3l8k_A           77 --------STVQDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIK--DPTHVIVKTDEGKEIEAETRYMIIASGAE  143 (466)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEE--ETTEEEEEETTSCEEEEEEEEEEECCCEE
T ss_pred             --------HHHHHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEe--cCCeEEEEcCCCcEEEEecCEEEECCCCC
Confidence                    00000000000022  44455556678888877 45544  46788888888887  9999999999963

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.97  E-value=1.4e-05  Score=86.10  Aligned_cols=139  Identities=19%  Similarity=0.212  Sum_probs=70.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-ccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      +|||+||||| +|+++|..|+++|++|+||||....+. ...++ +....+  +....+     .... ...+....+..
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l--~~~~~~-----~~~~-~~~~~~~g~~~   96 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKAL--LHASEM-----FHQA-QHGLEALGVEV   96 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHH--HHHHHH-----HHHH-HHSSGGGTEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHH--HHHHHH-----HHHH-HhhHhhcCccc
Confidence            5999999965 688999999999999999998754431 10000 111110  000000     0000 00000000000


Q ss_pred             cCCccccccccccc-eeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCCC
Q 009027          187 EGKGEIWVEDILNL-GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF  260 (546)
Q Consensus       187 ~~~~~l~~~~~l~~-~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~i~ArlVV~ADG~~  260 (546)
                      .. ..+..+..... .-.-..+...+...+.+.+++++.++...   .+++.+.|...+|  .+++++.||-|.|..
T Consensus        97 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~~v~~~~g~~~~~~~d~lViATGs~  169 (491)
T 3urh_A           97 AN-PKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKV---LGQGKVSVTNEKGEEQVLEAKNVVIATGSD  169 (491)
T ss_dssp             CC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---CSSSEEEEECTTSCEEEEECSEEEECCCEE
T ss_pred             CC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ecCCEEEEEeCCCceEEEEeCEEEEccCCC
Confidence            00 00000000000 00001233344455666789998886432   4566778877666  489999999999965

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.96  E-value=6e-05  Score=81.86  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=30.1

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .+|||+||||| +|+++|..|++.|++|+|||+.+
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            36999999964 68889999999999999999864

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.95  E-value=4.6e-05  Score=81.11  Aligned_cols=98  Identities=19%  Similarity=0.254  Sum_probs=77.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+|+.+..-..                       .                  
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-----------------------~------------------  206 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-----------------------M------------------  206 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------------------S------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-----------------------c------------------
Confidence            369999975 6999999999999999999987521100                       0                  


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                                    ...+.+.+.+.+.+.|++++.+++++++..+++++.|++++|+++.++.||.|+|..+..
T Consensus       207 --------------~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          207 --------------DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             --------------CHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             --------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence                          012334456666778999999999999998888888888788899999999999988754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.94  E-value=5.3e-05  Score=81.00  Aligned_cols=98  Identities=12%  Similarity=0.133  Sum_probs=76.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+|+.+..-..                                          
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  207 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ------------------------------------------  207 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------------------------------
Confidence            369999975 6999999999999999999987521100                                          


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc-C--Cc--EEEcCEEEEecCCChHH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-E--GK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-~--g~--~i~ArlVV~ADG~~S~v  263 (546)
                                  .+ ..+.+.+.+.+.+.|++++.+++++++..+++++.|+++ +  |+  ++.+++||.|.|..+..
T Consensus       208 ------------~~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          208 ------------GD-PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             ------------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred             ------------cC-HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence                        00 123455666777889999999999999888888888876 6  76  89999999999987654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.92  E-value=2e-05  Score=85.43  Aligned_cols=58  Identities=9%  Similarity=0.039  Sum_probs=47.7

Q ss_pred             eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC--------eEEEEEcCC-----cEEEcCEEEEecCC
Q 009027          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--------AAVLLLAEG-----KILSSHLIIDAMGN  259 (546)
Q Consensus       202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d--------gv~V~~~~g-----~~i~ArlVV~ADG~  259 (546)
                      ..+..+.+.|...|.+.+..|+++++|+++...++        .++|++.++     .+++||.||-|.|.
T Consensus       142 p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          142 PARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG  212 (501)
T ss_dssp             CBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence            56888999999988887778999999999986543        488887643     37999999999995

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.92  E-value=1e-05  Score=86.08  Aligned_cols=111  Identities=14%  Similarity=0.058  Sum_probs=68.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||||||| +|+++|..|+++  |++|+|||+.+......+      .+... --|..     .          .+.+ 
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~------~~~~~-~~g~~-----~----------~~~~-   57 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC------GIALY-LGKEI-----K----------NNDP-   57 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG------GHHHH-HTTCB-----G----------GGCG-
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc------cchhh-hcCCc-----c----------cCCH-
Confidence            589999965 688899999988  999999999874332111      00000 00000     0          0000 


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc-C--CcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-E--GKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-~--g~~i~ArlVV~ADG~~S  261 (546)
                        ..+.      .         .+.+.+.+.|++++.+++++.++.+++.+.+... +  +.+++++.||.|+|...
T Consensus        58 --~~~~------~---------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p  117 (452)
T 2cdu_A           58 --RGLF------Y---------SSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKP  117 (452)
T ss_dssp             --GGGB------S---------CCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             --HHhh------h---------cCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCc
Confidence              0000      0         0112234568999999999998776777766542 2  35799999999999653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.88  E-value=1.7e-05  Score=85.23  Aligned_cols=110  Identities=14%  Similarity=0.097  Sum_probs=69.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .+|||||||| +|+++|..|++.  |++|+|||+.+.....++ .+     ..+              .....    .  
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-~~-----~~~--------------~~~~~----~--   89 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-GL-----PYV--------------ISGAI----A--   89 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-GH-----HHH--------------HTTSS----S--
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-Cc-----chh--------------hcCCc----C--
Confidence            4799999965 688899999985  999999999875432111 01     000              00000    0  


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHH-HhcCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecCCCh
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a-~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~--~i~ArlVV~ADG~~S  261 (546)
                       ....+..     .          ..+.+ ...|++++.+++++.++.+++.+.+.. .+|+  +++++.||.|+|...
T Consensus        90 -~~~~l~~-----~----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p  152 (480)
T 3cgb_A           90 -STEKLIA-----R----------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRP  152 (480)
T ss_dssp             -CGGGGBS-----S----------CHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             -CHHHhhh-----c----------CHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcc
Confidence             0000000     0          01122 234899999999999887777777765 3465  799999999999653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.86  E-value=7.7e-06  Score=87.21  Aligned_cols=138  Identities=18%  Similarity=0.150  Sum_probs=71.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~-~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||+|||| ++|+++|..|++.|++|+|||+.+..+ ....+...+ +...+....++     +.+....+   .+.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p-~k~l~~~~~~~-----~~~~~~~~---g~~~~   71 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIP-SKALLETTERI-----YEAKKGLL---GAKVK   71 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHH-HHHHHHHHHHH-----HHHHHCCT---TEEEC
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchh-HHHHHHHHHHH-----HHHhhhcC---CcccC
Confidence            489999996 468899999999999999999985433 111111101 11111111100     00000000   01110


Q ss_pred             CCccccccccccce-eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~-V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      . .....+...... --...+...+.+.+.+.|++++.++.+.   .+++.+.|.+ +|.+++++.||.|+|...
T Consensus        72 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~---i~~~~~~v~~-~g~~~~~d~lviAtG~~p  141 (455)
T 2yqu_A           72 G-VELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARF---LSERKVLVEE-TGEELEARYILIATGSAP  141 (455)
T ss_dssp             C-EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---SSSSEEEETT-TCCEEEEEEEEECCCEEE
T ss_pred             C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEee-CCEEEEecEEEECCCCCC
Confidence            0 000000000000 0001233334555666799999887542   3455666655 677899999999999753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.85  E-value=2.2e-05  Score=82.50  Aligned_cols=107  Identities=20%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCe--EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLR--VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~r--VlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      ++|||||||| +|+++|..|+++|++  |+|+|+.+.....+. .+                       ...+-..... 
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-~l-----------------------~~~~~~~~~~-   63 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP-PL-----------------------SKEYLAREKT-   63 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG-GG-----------------------GTTTTTTSSC-
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc-cC-----------------------CHHHHcCCCC-
Confidence            6899999965 699999999999998  999999875432211 00                       0000000000 


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                        ...+.        ...       .+.+.+.|++++.+++++.++.+.  ..|.+.+++++.++.||-|+|..
T Consensus        64 --~~~~~--------~~~-------~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~~~~d~lvlAtG~~  118 (415)
T 3lxd_A           64 --FERIC--------IRP-------AQFWEDKAVEMKLGAEVVSLDPAA--HTVKLGDGSAIEYGKLIWATGGD  118 (415)
T ss_dssp             --SGGGB--------SSC-------HHHHHHTTEEEEETCCEEEEETTT--TEEEETTSCEEEEEEEEECCCEE
T ss_pred             --HHHhc--------cCC-------HHHHHHCCcEEEeCCEEEEEECCC--CEEEECCCCEEEeeEEEEccCCc
Confidence              00000        000       122345689999999999886543  35667788899999999999953

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.85  E-value=7.9e-05  Score=80.14  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=29.4

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      .+|||+||||| +|+++|..|++.|++|+||||.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            47999999964 6888999999999999999974

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.84  E-value=8.9e-05  Score=78.94  Aligned_cols=97  Identities=14%  Similarity=0.160  Sum_probs=75.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+.+-.                               .            
T Consensus       169 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------  205 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-------------------------------S------------  205 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T------------
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-------------------------------h------------
Confidence            69999976 699999999999999999998742100                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                                 ++ ..+.+.+.+.+++.|++++.+++++++..++++ +.|++++|+++.++.||.|.|..+.+
T Consensus       206 -----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          206 -----------FD-PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             -----------SC-HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             -----------hh-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence                       00 113445566677789999999999999876654 77888888899999999999987654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.82  E-value=1.7e-05  Score=84.03  Aligned_cols=106  Identities=15%  Similarity=0.104  Sum_probs=69.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHh---CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~---~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      +.|||||||| +|+++|..|++   .|++|+|||+.+.......       +..+ ..|.                    
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~-------~~~~-~~g~--------------------   55 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPS-------NPWV-GVGW--------------------   55 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGG-------HHHH-HHTS--------------------
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCC-------cccc-ccCc--------------------
Confidence            4799999975 69999999998   8999999998863211100       0000 0000                    


Q ss_pred             ccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       186 f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                                      .+...+...+.+.+.+.|++++. .++++++.++.  .|++++++++.+|.||.|.|..+.
T Consensus        56 ----------------~~~~~~~~~l~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~~g~~i~~d~lviAtG~~~~  113 (437)
T 3sx6_A           56 ----------------KERDDIAFPIRHYVERKGIHFIA-QSAEQIDAEAQ--NITLADGNTVHYDYLMIATGPKLA  113 (437)
T ss_dssp             ----------------SCHHHHEEECHHHHHTTTCEEEC-SCEEEEETTTT--EEEETTSCEEECSEEEECCCCEEC
T ss_pred             ----------------cCHHHHHHHHHHHHHHCCCEEEE-eEEEEEEcCCC--EEEECCCCEEECCEEEECCCCCcC
Confidence                            01111222233445567899874 68888865544  567778888999999999998654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=3e-05  Score=83.35  Aligned_cols=137  Identities=18%  Similarity=0.158  Sum_probs=71.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~-Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +||||||||| +|+++|..|++.|++|+||||....+....++ +..+.+..-.        .+...+ ..  .....+.
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~n~gciP~k~l~~~~--------~~~~~~-~~--~~~~g~~   79 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKALGGTCVNVGCVPKKVMWYAS--------DLATRV-SH--ANEYGLY   79 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSCTTHHHHHHSHHHHHHHHHHH--------HHHHHH-TT--TTTTTBS
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCCcCCcCcccCcHHHHHHHHHH--------HHHHHH-Hh--HHhcCcc
Confidence            6999999965 68899999999999999999985433211000 1111110000        000000 00  0000000


Q ss_pred             CCcc-ccccccccc--eeC-----HHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEcCEEEEec
Q 009027          188 GKGE-IWVEDILNL--GVS-----PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAM  257 (546)
Q Consensus       188 ~~~~-l~~~~~l~~--~V~-----~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~--~i~ArlVV~AD  257 (546)
                      .... ........+  .+.     ...+...+.+.+.+.|++++.++ ++.+  +++.+.|.+.+|+  +++++.||.|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i--~~~~~~v~~~~g~~~~~~~d~lviAt  156 (479)
T 2hqm_A           80 QNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN--KDGNVEVQKRDNTTEVYSANHILVAT  156 (479)
T ss_dssp             TTSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC--TTSCEEEEESSSCCEEEEEEEEEECC
T ss_pred             cccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe--eCCEEEEEeCCCcEEEEEeCEEEEcC
Confidence            0000 000000000  000     01233445556667788988774 4433  4556777776776  89999999999


Q ss_pred             CCC
Q 009027          258 GNF  260 (546)
Q Consensus       258 G~~  260 (546)
                      |..
T Consensus       157 Gs~  159 (479)
T 2hqm_A          157 GGK  159 (479)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            964

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.80  E-value=5.3e-05  Score=80.52  Aligned_cols=106  Identities=20%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .+||+||||| +|+++|..|++.  |++|+|+|+.+......+              ++-           .+    +  
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~--------------~~p-----------~~----~--   51 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC--------------GIP-----------YV----V--   51 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc--------------CCc-----------cc----c--
Confidence            4799999965 699999999987  899999999874331110              000           00    0  


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHH-HhcCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEcCEEEEecCCC
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNF  260 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a-~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-~~i~ArlVV~ADG~~  260 (546)
                      .+.            .+...+.....+.+ .+.|++++.++++++++  .+...|.++++ .+++++.||-|.|..
T Consensus        52 ~~~------------~~~~~~~~~~~~~~~~~~gi~v~~~~~v~~i~--~~~~~v~~~~g~~~~~~d~lviAtG~~  113 (449)
T 3kd9_A           52 EGL------------STPDKLMYYPPEVFIKKRGIDLHLNAEVIEVD--TGYVRVRENGGEKSYEWDYLVFANGAS  113 (449)
T ss_dssp             --------------------------CTHHHHTTCEEETTCEEEEEC--SSEEEEECSSSEEEEECSEEEECCCEE
T ss_pred             CCC------------CCHHHhhhcCHHHHHHhcCcEEEecCEEEEEe--cCCCEEEECCceEEEEcCEEEECCCCC
Confidence            000            00001111111222 45689999999998874  45567777666 489999999999964

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.80  E-value=9.1e-05  Score=79.51  Aligned_cols=33  Identities=33%  Similarity=0.484  Sum_probs=29.0

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      .+||||||||| +|+++|..|+++|++|+||||.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            37999999965 6888999999999999999963

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.77  E-value=2.9e-05  Score=82.48  Aligned_cols=109  Identities=15%  Similarity=0.153  Sum_probs=68.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      +|||||||| +|+++|..|++.  |++|+|||+.+..+...+ .     +... --+.             +       .
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-~-----~~~~-~~~~-------------~-------~   53 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSA-G-----MQLY-LEGK-------------V-------K   53 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGG-G-----HHHH-HTTS-------------S-------C
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccc-c-----chhh-hcCc-------------c-------C
Confidence            489999965 688899999987  999999999875432111 0     0000 0000             0       0


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~--~i~ArlVV~ADG~~S  261 (546)
                      ....+..               .+.+.+.+.|++++.+++++.++.+++.+.+.. .+|+  +++++.||.|+|...
T Consensus        54 ~~~~~~~---------------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p  115 (447)
T 1nhp_A           54 DVNSVRY---------------MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP  115 (447)
T ss_dssp             CGGGSBS---------------CCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             CHHHhhc---------------CCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCc
Confidence            0000000               001223356899999999999877777776664 3454  499999999999653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.75  E-value=3.1e-05  Score=82.42  Aligned_cols=108  Identities=15%  Similarity=0.148  Sum_probs=69.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .|||||||| +|+++|..|+++  |++|+|||+.+..+..+.              ++.           .+.....  .
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~--------------~~~-----------~~~~~~~--~   55 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSG--------------GLS-----------AYFNHTI--N   55 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCc--------------cch-----------hhhcCCC--C
Confidence            599999965 699999999988  999999999875442111              000           0000000  0


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc-CCcEEEcCEEEEecCCC
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNF  260 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-~g~~i~ArlVV~ADG~~  260 (546)
                      ....+.        .       .+.+.+.+.|++++.+++|++++..+..+.+... ++.+++++.||-|.|..
T Consensus        56 ~~~~~~--------~-------~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~  114 (452)
T 3oc4_A           56 ELHEAR--------Y-------ITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGAS  114 (452)
T ss_dssp             -----C--------C-------CCHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCC
T ss_pred             CHHHhh--------c-------CCHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcc
Confidence            000000        0       0112334568899999999999887777777632 35589999999999985

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.73  E-value=3.8e-05  Score=82.30  Aligned_cols=36  Identities=36%  Similarity=0.529  Sum_probs=31.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +|||+||||| +|+++|..|+++|++|+||||....+
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~~GG   56 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGG   56 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            6999999965 68899999999999999999876544

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.73  E-value=8.6e-05  Score=79.28  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      +|||+||||| +|+++|..|+++|++|+|||+....
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~G   39 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIG   39 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            6999999965 6889999999999999999998543

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.71  E-value=3.9e-05  Score=81.93  Aligned_cols=35  Identities=29%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      +|||+||||| +|+++|..|+++|++|+||||....
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~~G   40 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYG   40 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            6999999965 6889999999999999999995443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.71  E-value=0.00038  Score=72.75  Aligned_cols=105  Identities=20%  Similarity=0.312  Sum_probs=80.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+.+-.                                          . 
T Consensus       144 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------~-  180 (404)
T 3fg2_P          144 HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA------------------------------------------R-  180 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT------------------------------------------T-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh------------------------------------------h-
Confidence            59999975 699999999999999999997752110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEcCEEEEecCCCh--HHHHHh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFS--PVVKQI  267 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql  267 (546)
                            .    . ...+.+.+.+.+++.|++++.+++++++..+++.+ .|.+++|+++.|++||-|.|...  .+.+.+
T Consensus       181 ------~----~-~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~  249 (404)
T 3fg2_P          181 ------V----V-TPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAA  249 (404)
T ss_dssp             ------T----S-CHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHT
T ss_pred             ------c----c-CHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhC
Confidence                  0    0 02344566777788899999999999998877766 48888899999999999999854  456666


Q ss_pred             cCC
Q 009027          268 RSG  270 (546)
Q Consensus       268 ~~~  270 (546)
                      ++.
T Consensus       250 gl~  252 (404)
T 3fg2_P          250 GLP  252 (404)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            554

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.69  E-value=0.00015  Score=77.52  Aligned_cols=97  Identities=18%  Similarity=0.182  Sum_probs=76.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+.+-.                               .            
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~------------  204 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-------------------------------Q------------  204 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T------------
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-------------------------------c------------
Confidence            69999976 699999999999999999997742100                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc-EEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~-~i~ArlVV~ADG~~S~v  263 (546)
                                 ++ ..+.+.+.+.+.+.|++++.+++++++..+++++.|++++|+ ++.++.||.|.|..+..
T Consensus       205 -----------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          205 -----------FD-PLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred             -----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence                       00 012244566677789999999999999888778888888888 89999999999987654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.69  E-value=4e-05  Score=80.13  Aligned_cols=106  Identities=12%  Similarity=0.124  Sum_probs=69.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ..-|+||||| +|+++|..|+..|.+|+|||+.+.....+. .++.    .+  .|-             ..        
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~-~l~~----~l--~g~-------------~~--------   60 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRP-RLNE----II--AKN-------------KS--------   60 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGG-GHHH----HH--HSC-------------CC--------
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccC-hhhH----HH--cCC-------------CC--------
Confidence            3569999965 688899999888999999999876443221 0100    01  000             00        


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      ...+..        .       ..+.+.+.|++++.+++|++++.++.  .|++++|+++.+|.||-|.|..
T Consensus        61 ~~~l~~--------~-------~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~~  115 (385)
T 3klj_A           61 IDDILI--------K-------KNDWYEKNNIKVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGSI  115 (385)
T ss_dssp             GGGTBS--------S-------CHHHHHHTTCEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             HHHccC--------C-------CHHHHHHCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCCC
Confidence            000000        0       01223356899999999999876554  5667788899999999999963

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.68  E-value=6.1e-05  Score=80.56  Aligned_cols=36  Identities=36%  Similarity=0.469  Sum_probs=31.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +||||||||| +|+++|..|++.|++|+|||+....+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~~GG   42 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGEVGG   42 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            5999999965 68889999999999999999987433

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.67  E-value=6.1e-05  Score=78.92  Aligned_cols=105  Identities=18%  Similarity=0.197  Sum_probs=66.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~--rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .|||||||| +|+++|..|+++|+  +|+|||+.+.....+. .++                       ..+-.....  
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-~l~-----------------------~~~l~~~~~--   55 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP-PLS-----------------------KAYLKSGGD--   55 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG-GGG-----------------------TGGGGSCCC--
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc-cCC-----------------------HHHHCCCCC--
Confidence            489999965 69999999999999  8999999874332211 000                       000000000  


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                       ...+.        ..       ..+.+.+.+++++. ++++.++.+..  .|.+.+|+++.++.||-|+|..
T Consensus        56 -~~~~~--------~~-------~~~~~~~~~i~~~~-~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  109 (404)
T 3fg2_P           56 -PNSLM--------FR-------PEKFFQDQAIELIS-DRMVSIDREGR--KLLLASGTAIEYGHLVLATGAR  109 (404)
T ss_dssp             -TTSSB--------SS-------CHHHHHHTTEEEEC-CCEEEEETTTT--EEEESSSCEEECSEEEECCCEE
T ss_pred             -HHHcc--------CC-------CHHHHHhCCCEEEE-EEEEEEECCCC--EEEECCCCEEECCEEEEeeCCC
Confidence             00000        00       01223356889988 89998865544  5667788899999999999963

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.67  E-value=3.2e-05  Score=80.21  Aligned_cols=103  Identities=16%  Similarity=0.130  Sum_probs=64.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -||+||||| +|+++|..|++.| +|+|||+.+.+...+. .++ .   .+  .|.                  +.+   
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~-~l~-~---~~--~g~------------------~~~---   59 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKP-MLS-H---YI--AGF------------------IPR---   59 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCST-THH-H---HH--TTS------------------SCG---
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccc-hhH-H---HH--hCC------------------CCH---
Confidence            599999965 6888999999999 9999999875432111 000 0   00  010                  000   


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      ..+.. .          .    .+.+.+.|++++.+++++.++.+.  ..|. .++++++++.||-|+|..
T Consensus        60 ~~~~~-~----------~----~~~~~~~~v~~~~g~~v~~id~~~--~~V~-~~g~~~~~d~lViATGs~  112 (367)
T 1xhc_A           60 NRLFP-Y----------S----LDWYRKRGIEIRLAEEAKLIDRGR--KVVI-TEKGEVPYDTLVLATGAR  112 (367)
T ss_dssp             GGGCS-S----------C----HHHHHHHTEEEECSCCEEEEETTT--TEEE-ESSCEEECSEEEECCCEE
T ss_pred             HHhcc-C----------C----HHHHHhCCcEEEECCEEEEEECCC--CEEE-ECCcEEECCEEEECCCCC
Confidence            00000 0          0    112234688999999998876543  3455 577889999999999964

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=97.67  E-value=2.4e-05  Score=79.46  Aligned_cols=43  Identities=12%  Similarity=0.109  Sum_probs=34.9

Q ss_pred             ccCCcEEEeCCCCCCCCCCCCCc--chhhHhhHHHHHHHHHHHHh
Q 009027          385 AAFNRILQFGDASGIQSPVSFGG--FGSLTRHLGRLSTGVYEAVR  427 (546)
Q Consensus       385 ~~~~rvlLVGDAA~~v~Plsg~G--~g~~lrd~~~Lae~I~~Al~  427 (546)
                      +.-++++.+||||..++++...|  ||.|+.+..+.|+.|.++|.
T Consensus       281 t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~la  325 (326)
T 3fpz_A          281 AGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  325 (326)
T ss_dssp             TTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence            34578999999999999987767  67777777777888888775

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.66  E-value=7.4e-05  Score=82.24  Aligned_cols=110  Identities=17%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      ..||+||||| +|+++|..|+++  |++|+|+|+.+..+..++      .+... -.|.                  +. 
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~------~lp~~-~~g~------------------~~-   89 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANC------GLPYY-IGGV------------------IT-   89 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG------GHHHH-HTTS------------------SC-
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCC------CCchh-hcCc------------------CC-
Confidence            5799999965 699999999988  999999999876442211      00000 0000                  00 


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecCCC
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~--~i~ArlVV~ADG~~  260 (546)
                       ....+     +         ...+...+.+.|++++.+++|++++.++..+.+.. .+|+  +++++.||-|.|..
T Consensus        90 -~~~~~-----~---------~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~  151 (588)
T 3ics_A           90 -ERQKL-----L---------VQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAK  151 (588)
T ss_dssp             -CGGGG-----B---------SSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             -ChHHh-----h---------ccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCC
Confidence             00000     0         01112223356899999999999988777777764 3455  78999999999963

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.64  E-value=3.7e-05  Score=82.04  Aligned_cols=56  Identities=11%  Similarity=0.052  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEe--CCeE-EEEEcCCcEEEcCEEEEecCCChH
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTY--ENAA-VLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~--~dgv-~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      .+-+.|.+.+++.|++++.+++|+++..+  ++.+ .|.+ +|++++|+.||.|.|..+.
T Consensus       243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            46677788888889999999999999988  6665 3555 6788999999999998864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.64  E-value=3.4e-05  Score=80.77  Aligned_cols=104  Identities=14%  Similarity=0.099  Sum_probs=64.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHh---CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          111 FDVIVCGGT-LGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~---~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .||+||||| +|+++|..|++   .|++|+|||+++.......+                .          .......  
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~----------------~----------~~~~~~~--   53 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPAL----------------P----------HVAIGVR--   53 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSS----------------C----------CCCSSCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccch----------------h----------hcccCCc--
Confidence            479999975 69999999999   89999999988732110000                0          0000000  


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCc----EEEcCEEEEecCCCh
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK----ILSSHLIIDAMGNFS  261 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~----~i~ArlVV~ADG~~S  261 (546)
                       ....+               ...+.+.+.+.|++++.+ +|++++.++..++  +++++    +++++.||.|+|...
T Consensus        54 -~~~~~---------------~~~~~~~~~~~gv~~~~~-~v~~i~~~~~~V~--~~~g~~~~~~~~~d~lViAtG~~~  113 (409)
T 3h8l_A           54 -DVDEL---------------KVDLSEALPEKGIQFQEG-TVEKIDAKSSMVY--YTKPDGSMAEEEYDYVIVGIGAHL  113 (409)
T ss_dssp             -CCCCE---------------EEEHHHHTGGGTCEEEEC-EEEEEETTTTEEE--EECTTSCEEEEECSEEEECCCCEE
T ss_pred             -CHHHH---------------HHHHHHHHhhCCeEEEEe-eEEEEeCCCCEEE--EccCCcccceeeCCEEEECCCCCc
Confidence             00000               011233444678999887 8888876555444  44443    599999999999854

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.64  E-value=0.00027  Score=75.19  Aligned_cols=98  Identities=20%  Similarity=0.263  Sum_probs=75.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -+|+||||| .|+-+|..|++.|.+|.|+|+.+.+-                     .                     .
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------------------~---------------------~  208 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL---------------------S---------------------G  208 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------------------T---------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc---------------------c---------------------c
Confidence            479999975 69999999999999999999875211                     0                     0


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc---CCcEEEcCEEEEecCCChHH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---~g~~i~ArlVV~ADG~~S~v  263 (546)
                                  .+ ..+.+.+.+.+.+.|++++.+++++++..+++++.|++.   +++++.++.||.|.|.....
T Consensus       209 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  272 (455)
T 1ebd_A          209 ------------FE-KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNT  272 (455)
T ss_dssp             ------------SC-HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESC
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCccc
Confidence                        00 123445566677889999999999999888777777764   34689999999999987643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.62  E-value=0.00031  Score=78.98  Aligned_cols=52  Identities=10%  Similarity=0.159  Sum_probs=40.4

Q ss_pred             HHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc---CCcEEEcCEEEEecCCCh
Q 009027          208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       208 ~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---~g~~i~ArlVV~ADG~~S  261 (546)
                      ...+.+.+.+.|++++.+++|+++.  ++++.+...   +++++.|+.||-|.|...
T Consensus       570 ~~~l~~~l~~~GV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p  624 (690)
T 3k30_A          570 VNRIQRRLIENGVARVTDHAVVAVG--AGGVTVRDTYASIERELECDAVVMVTARLP  624 (690)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEE--TTEEEEEETTTCCEEEEECSEEEEESCEEE
T ss_pred             HHHHHHHHHHCCCEEEcCcEEEEEE--CCeEEEEEccCCeEEEEECCEEEECCCCCC
Confidence            4567778888999999999999875  456666542   345899999999999653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.62  E-value=0.00013  Score=78.13  Aligned_cols=116  Identities=14%  Similarity=0.096  Sum_probs=62.0

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      +.||+||||| +|+++|..|+++  |++|+|||+.+.....++              |+..           +-...+. 
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~--------------gl~~-----------~~~g~~~-   56 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGC--------------GIPY-----------YVSGEVS-   56 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccccccc--------------ccch-----------hhcCCCC-
Confidence            4699999965 799999999988  999999999875432111              1100           0000000 


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecCCC
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~--~i~ArlVV~ADG~~  260 (546)
                       ....+. +.       +..+...+...+...|++++.+++|++++..+..+.+.. .+|.  +++++.||.|.|..
T Consensus        57 -~~~~~~-~~-------~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~  124 (472)
T 3iwa_A           57 -NIESLQ-AT-------PYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSK  124 (472)
T ss_dssp             ---------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             -chHHhc-cc-------cchhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCC
Confidence             000000 00       000111111222246889999999999987777777764 2354  89999999999963

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.62  E-value=0.00034  Score=74.82  Aligned_cols=98  Identities=17%  Similarity=0.221  Sum_probs=74.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+|+.+.+...                                          
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  221 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS------------------------------------------  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS------------------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc------------------------------------------
Confidence            369999976 6999999999999999999987521100                                          


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE--eCCeEEEEEc-----CCcEEEcCEEEEecCCChH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT--YENAAVLLLA-----EGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~--~~dgv~V~~~-----~g~~i~ArlVV~ADG~~S~  262 (546)
                                  .+ ..+.+.+.+.+++.|++++.+++++++..  +++.+.|.++     +++++.++.||.|.|....
T Consensus       222 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~  288 (478)
T 1v59_A          222 ------------MD-GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY  288 (478)
T ss_dssp             ------------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEEC
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcC
Confidence                        00 13445566677788999999999999987  5566777765     3468999999999997765


Q ss_pred             H
Q 009027          263 V  263 (546)
Q Consensus       263 v  263 (546)
                      .
T Consensus       289 ~  289 (478)
T 1v59_A          289 I  289 (478)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.61  E-value=7.7e-05  Score=80.50  Aligned_cols=108  Identities=20%  Similarity=0.245  Sum_probs=72.0

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++||+||||| +|+++|..|+++ ++|+|||+.+.++..... .                         .+  ....+  
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~-~-------------------------~~--~~~g~--  156 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL-K-------------------------GI--KQEGF--  156 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG-T-------------------------CS--EETTT--
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec-c-------------------------cc--ccCCC--
Confidence            5899999965 699999999999 999999998754421000 0                         00  00000  


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~--~i~ArlVV~ADG~~S  261 (546)
                            +.      +...+...+.+.+ +.|++++.++++.++..+++.+.+.. ++++  +++++.||-|.|...
T Consensus       157 ------~~------~~~~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~  219 (493)
T 1y56_A          157 ------NK------DSRKVVEELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAID  219 (493)
T ss_dssp             ------TE------EHHHHHHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEE
T ss_pred             ------CC------CHHHHHHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCc
Confidence                  00      2233444444444 56889999999999887777665544 3454  799999999999653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.61  E-value=0.00042  Score=72.67  Aligned_cols=105  Identities=16%  Similarity=0.245  Sum_probs=80.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+.+-.                                          . 
T Consensus       154 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~------------------------------------------~-  190 (415)
T 3lxd_A          154 NAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA------------------------------------------R-  190 (415)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------------------T-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh------------------------------------------h-
Confidence            58999976 699999999999999999997753110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEcCEEEEecCCChH--HHHHh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP--VVKQI  267 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~g~~i~ArlVV~ADG~~S~--vr~ql  267 (546)
                            .    . ...+.+.+.+.+++.|++++.+++++++..+++.+ .|.+++|+++.|++||-|.|....  +.+.+
T Consensus       191 ------~----~-~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~  259 (415)
T 3lxd_A          191 ------V----A-GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISA  259 (415)
T ss_dssp             ------T----S-CHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHT
T ss_pred             ------h----c-CHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhC
Confidence                  0    0 02344566677778899999999999998776665 588888999999999999998654  55565


Q ss_pred             cCC
Q 009027          268 RSG  270 (546)
Q Consensus       268 ~~~  270 (546)
                      ++.
T Consensus       260 gl~  262 (415)
T 3lxd_A          260 GAS  262 (415)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            544

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.61  E-value=0.00013  Score=78.63  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=28.0

Q ss_pred             cccEEEEcch-HHHHHHHHHHh-CCCeEEEEcC
Q 009027          110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVER  140 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~-~G~rVlLlEr  140 (546)
                      +|||+||||| +|+++|..|++ .|++|+|||+
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            6999999965 68889999999 9999999993

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.58  E-value=0.00054  Score=73.18  Aligned_cols=106  Identities=17%  Similarity=0.235  Sum_probs=81.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          111 FDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      -.|+||||| .|+-+|..|++. |.+|.++|+.+..-..                                         
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~-----------------------------------------  198 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG-----------------------------------------  198 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT-----------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc-----------------------------------------
Confidence            369999975 699999999999 9999999976421000                                         


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHH
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQ  266 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~q  266 (546)
                        .          .+ ..+.+.+.+.+++.|++++.+++++++..+++.++|.+++|+++.|+.||-|.|...  .+.+.
T Consensus       199 --~----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~  265 (472)
T 3iwa_A          199 --F----------TS-KSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARD  265 (472)
T ss_dssp             --T----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHH
T ss_pred             --c----------cC-HHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHh
Confidence              0          00 134556677777889999999999999887778888888888999999999999853  46666


Q ss_pred             hcCC
Q 009027          267 IRSG  270 (546)
Q Consensus       267 l~~~  270 (546)
                      +++.
T Consensus       266 ~gl~  269 (472)
T 3iwa_A          266 AGLE  269 (472)
T ss_dssp             HTCC
T ss_pred             CCcc
Confidence            6654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.57  E-value=6e-05  Score=79.20  Aligned_cols=105  Identities=17%  Similarity=0.240  Sum_probs=68.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCe--EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLR--VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~r--VlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .||+||||| +|+++|..|+++|++  |+|+|+.+.....+. .++..                  .......+      
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~-~l~~~------------------~~~g~~~~------   57 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP-SLSKA------------------VLDGSLER------   57 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG-GGGTH------------------HHHTSSSS------
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc-cccHH------------------HhCCCCCH------
Confidence            589999965 699999999999988  999999875442211 01100                  00000000      


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                        ..+ .        ..       .+.+.+.|++++.+++++.++.+..  .|.+.+|+++.++.||-|+|..
T Consensus        58 --~~~-~--------~~-------~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           58 --PPI-L--------AE-------ADWYGEARIDMLTGPEVTALDVQTR--TISLDDGTTLSADAIVIATGSR  110 (410)
T ss_dssp             --CCB-S--------SC-------TTHHHHTTCEEEESCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             --HHh-c--------CC-------HHHHHHCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEccCCc
Confidence              001 0        00       0112346899999999998865443  5667788899999999999965

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.55  E-value=3.5e-05  Score=82.66  Aligned_cols=53  Identities=11%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                      ..+-+.|.+.+.+.|++++.+++|+++..++..  +++.+|++++|+.||-+.-.
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCH
Confidence            346667777777789999999999999766654  45678999999999976543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.55  E-value=0.00021  Score=75.06  Aligned_cols=104  Identities=15%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCe--EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLR--VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~r--VlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .+||+||||| +|+++|..|+++|++  |+|+|+.+.....+. .++..                  ...... .     
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-~~~~~------------------~~~~~~-~-----   61 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP-PLSKD------------------FMAHGD-A-----   61 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG-GGGTH------------------HHHHCC-G-----
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCC-CCCHH------------------HhCCCc-h-----
Confidence            6899999965 689999999999984  999998864332111 01100                  000000 0     


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                         ..+.        +.          .+.+.|++++.+++|+.++.+.  ..|++++|++++++.||.|+|...
T Consensus        62 ---~~~~--------~~----------~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~  113 (408)
T 2gqw_A           62 ---EKIR--------LD----------CKRAPEVEWLLGVTAQSFDPQA--HTVALSDGRTLPYGTLVLATGAAP  113 (408)
T ss_dssp             ---GGSB--------CC----------CTTSCSCEEEETCCEEEEETTT--TEEEETTSCEEECSEEEECCCEEE
T ss_pred             ---hhhh--------HH----------HHHHCCCEEEcCCEEEEEECCC--CEEEECCCCEEECCEEEECCCCCC
Confidence               0000        11          2235688999999999886543  356677788999999999999754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.54  E-value=5.3e-05  Score=81.85  Aligned_cols=34  Identities=35%  Similarity=0.544  Sum_probs=30.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      +||||||||| +|+++|..|++.|++|+|||+...
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   36 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRL   36 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSST
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            5899999965 688899999999999999999864

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.53  E-value=0.00035  Score=75.85  Aligned_cols=34  Identities=35%  Similarity=0.467  Sum_probs=30.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++|||||||| +|+++|..|++.|++|+|||+...
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~   77 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   77 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            6999999965 688999999999999999999873

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.53  E-value=0.00012  Score=80.04  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             CCCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       107 ~~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      .+.+||||||||| .|..+|..+|+.|.||+|||+...
T Consensus        39 ~~ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           39 HTYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             CCSSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            3447999999965 577888899999999999997654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.51  E-value=0.00019  Score=76.76  Aligned_cols=34  Identities=38%  Similarity=0.589  Sum_probs=30.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      +|||+||||| +|+++|..|++.|++|+|||+...
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   38 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKAL   38 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence            6999999965 688999999999999999999854

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.50  E-value=0.0002  Score=74.42  Aligned_cols=106  Identities=10%  Similarity=0.055  Sum_probs=64.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G--~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      +||||||||| +|+++|..|+++|  .+|+|+|++......+.                    .+..    .+       
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~--------------------~l~~----~~-------   52 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKP--------------------MLST----GF-------   52 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGG--------------------GGGG----TT-------
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcc--------------------cccH----HH-------
Confidence            5899999965 6888999999999  56899998752110000                    0000    00       


Q ss_pred             cCCccccccccccceeCHHHHHH-HHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~-~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      ...            .....+.. .+.+.+.+.|++++.+++++.++.++.  .|.+. +.+++++.||.|+|...
T Consensus        53 ~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~-~~~~~~d~lviAtG~~p  113 (384)
T 2v3a_A           53 SKN------------KDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQ--RIWIG-EEEVRYRDLVLAWGAEP  113 (384)
T ss_dssp             TTT------------CCHHHHEEECHHHHHHHTTCEEECSCCCCEEEGGGT--EEEET-TEEEECSEEEECCCEEE
T ss_pred             hCC------------CCHHHhhccCHHHHHHhCCcEEEeCCEEEEEECCCC--EEEEC-CcEEECCEEEEeCCCCc
Confidence            000            00111111 122233456899999988888765443  45554 44799999999999754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.48  E-value=0.00048  Score=74.73  Aligned_cols=105  Identities=18%  Similarity=0.234  Sum_probs=80.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+..-                     .                     .
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l---------------------~---------------------~  252 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK---------------------L---------------------I  252 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT---------------------T---------------------C
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc---------------------c---------------------c
Confidence            469999976 69999999999999999999775210                     0                     0


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe----EEEEEcCCc-EEEcCEEEEecCCChHH-
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK-ILSSHLIIDAMGNFSPV-  263 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg----v~V~~~~g~-~i~ArlVV~ADG~~S~v-  263 (546)
                                  .+ ..+.+.|.+.+++.|++++.+++|+++..++++    +.|++++|+ ++.|+.||-|.|..+.. 
T Consensus       253 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~  319 (523)
T 1mo9_A          253 ------------KD-NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA  319 (523)
T ss_dssp             ------------CS-HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred             ------------cc-HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence                        00 123455677777889999999999999876666    778887887 89999999999987653 


Q ss_pred             --HHHhcCC
Q 009027          264 --VKQIRSG  270 (546)
Q Consensus       264 --r~ql~~~  270 (546)
                        .+.+++.
T Consensus       320 ~~l~~~gl~  328 (523)
T 1mo9_A          320 ELAKILGLD  328 (523)
T ss_dssp             HHHHHHTCC
T ss_pred             cCHHHcCCc
Confidence              4566543

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.48  E-value=0.0019  Score=71.03  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             CCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 009027          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       108 ~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      ..+|||+|||| ++|+++|..|+++|++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            44799999996 56889999999999999999974

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.48  E-value=0.00035  Score=74.07  Aligned_cols=97  Identities=15%  Similarity=0.215  Sum_probs=72.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ..+|+||||| .|+.+|..|++.|.+|.|+|+.+.+...                               +         
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------~---------  188 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-------------------------------Y---------  188 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------------------------T---------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc-------------------------------c---------
Confidence            4689999965 6999999999999999999987521100                               0         


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEcCEEEEecCCChH
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                                   .+ ..+.+.+.+.+.+.|++++.+++++++..+ +.+ .|.+ ++.++.++.||.|.|..+.
T Consensus       189 -------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          189 -------------LD-KEFTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             -------------CC-HHHHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             -------------CC-HHHHHHHHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence                         00 134456677778889999999999998755 433 4555 5678999999999997764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.46  E-value=0.00036  Score=73.22  Aligned_cols=106  Identities=16%  Similarity=0.213  Sum_probs=79.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+.+-        +..                                 
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l--------~~~---------------------------------  182 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL--------VRV---------------------------------  182 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------HHH---------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc--------hhh---------------------------------
Confidence            369999976 69999999999999999999775211        000                                 


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH--HHHHh
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI  267 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~--vr~ql  267 (546)
                                  ++ ..+.+.+.+.+++.|++++.+++++++..++....|.+++|+++.|++||-|.|..+.  +.+.+
T Consensus       183 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~  249 (410)
T 3ef6_A          183 ------------LG-RRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQA  249 (410)
T ss_dssp             ------------HC-HHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHT
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhC
Confidence                        00 1234556667777899999999999987655445688888999999999999998654  56666


Q ss_pred             cCC
Q 009027          268 RSG  270 (546)
Q Consensus       268 ~~~  270 (546)
                      ++.
T Consensus       250 gl~  252 (410)
T 3ef6_A          250 GLA  252 (410)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            544

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.43  E-value=0.00084  Score=70.94  Aligned_cols=105  Identities=15%  Similarity=0.228  Sum_probs=77.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+.+-.                               .            
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~------------  187 (431)
T 1q1r_A          151 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-------------------------------R------------  187 (431)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-------------------------------T------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-------------------------------c------------
Confidence            69999975 699999999999999999998642110                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE--eCCeE-EEEEcCCcEEEcCEEEEecCCCh--HHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT--YENAA-VLLLAEGKILSSHLIIDAMGNFS--PVVK  265 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~--~~dgv-~V~~~~g~~i~ArlVV~ADG~~S--~vr~  265 (546)
                      .          ++ ..+.+.+.+.+++.|++++.+++++++..  +++.+ .|.+++|+++.|++||.|.|..+  .+.+
T Consensus       188 ~----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~  256 (431)
T 1q1r_A          188 V----------TA-PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS  256 (431)
T ss_dssp             T----------SC-HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHH
T ss_pred             h----------hh-HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhh
Confidence            0          00 12334556667778999999999999986  44555 67788888999999999999653  4666


Q ss_pred             HhcCC
Q 009027          266 QIRSG  270 (546)
Q Consensus       266 ql~~~  270 (546)
                      .+++.
T Consensus       257 ~~gl~  261 (431)
T 1q1r_A          257 AAGLQ  261 (431)
T ss_dssp             HTTCC
T ss_pred             ccCCC
Confidence            66543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0011  Score=71.15  Aligned_cols=97  Identities=16%  Similarity=0.198  Sum_probs=74.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+.+-.                               .            
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------  223 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR-------------------------------K------------  223 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------------------T------------
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc-------------------------------c------------
Confidence            59999976 699999999999999999998752110                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EEEEEcCC-cEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEG-KILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~g-~~i~ArlVV~ADG~~S~v  263 (546)
                                 ++ ..+.+.+.+.+++.|++++.+++++++..++++  +.|++++| +++.++.||.|.|.....
T Consensus       224 -----------~d-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          224 -----------FD-ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             -----------SC-HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             -----------cC-HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence                       00 123345566667789999999999999876555  77888888 789999999999976654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.42  E-value=0.0003  Score=74.99  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=29.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      +|||+||||| +|+++|..|++.|++|+|||+...
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~   39 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQAL   39 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCCC
Confidence            6999999965 688899999999999999999544

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.42  E-value=0.00068  Score=72.27  Aligned_cols=103  Identities=13%  Similarity=0.193  Sum_probs=76.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..-.                               .            
T Consensus       176 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------  212 (468)
T 2qae_A          176 TMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-------------------------------T------------  212 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T------------
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc-------------------------------c------------
Confidence            68999976 699999999999999999998752100                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHH-HhcCCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEcCEEEEecCCChHH--
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSPV--  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a-~~~G~~v~~~t~v~~i~~~~dgv~V~~~--~g--~~i~ArlVV~ADG~~S~v--  263 (546)
                                 ++ ..+.+.+.+.+ ++.|++++.+++++++..+++++.|.++  +|  +++.++.||-|.|..+..  
T Consensus       213 -----------~d-~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  280 (468)
T 2qae_A          213 -----------LD-EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGG  280 (468)
T ss_dssp             -----------SC-HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTT
T ss_pred             -----------CC-HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCC
Confidence                       00 12345566677 7889999999999999887777777775  56  589999999999987653  


Q ss_pred             --HHHhcC
Q 009027          264 --VKQIRS  269 (546)
Q Consensus       264 --r~ql~~  269 (546)
                        .+.+++
T Consensus       281 l~l~~~gl  288 (468)
T 2qae_A          281 LGLDKINV  288 (468)
T ss_dssp             SCHHHHTC
T ss_pred             CCchhcCC
Confidence              455554

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.39  E-value=0.00017  Score=78.67  Aligned_cols=109  Identities=10%  Similarity=0.030  Sum_probs=68.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .||+||||| +|+++|..|+++  |++|+|+|+.+.....+. .+     ...              .......      
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~-~l-----~~~--------------~~~~~~~------   55 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANC-GL-----PYH--------------ISGEIAQ------   55 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG-GH-----HHH--------------HTSSSCC------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccccc-Cc-----hHH--------------hcCCcCC------
Confidence            489999965 699999999988  899999999876542211 00     000              0000000      


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecCCC
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~--~i~ArlVV~ADG~~  260 (546)
                       .....        ..      .+...+...|++++.+++|++++.+...+.+.. .+|+  +++++.||-|.|..
T Consensus        56 -~~~~~--------~~------~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~  116 (565)
T 3ntd_A           56 -RSALV--------LQ------TPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAA  116 (565)
T ss_dssp             -GGGGB--------CC------CHHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             -hHHhh--------cc------CHHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCC
Confidence             00000        00      001112235889999999999988777777764 2343  79999999999974

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.38  E-value=0.001  Score=71.02  Aligned_cols=105  Identities=10%  Similarity=0.168  Sum_probs=77.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+..-..                                           
T Consensus       180 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  216 (474)
T 1zmd_A          180 KMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV-------------------------------------------  216 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS-------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc-------------------------------------------
Confidence            69999975 6999999999999999999987521100                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEE-----cCCcEEEcCEEEEecCCChHH-
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLL-----AEGKILSSHLIIDAMGNFSPV-  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~-----~~g~~i~ArlVV~ADG~~S~v-  263 (546)
                      .          ++ ..+.+.+.+.+++.|++++.+++++++..++++ +.|++     .+++++.++.||.|.|..+.. 
T Consensus       217 ~----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~  285 (474)
T 1zmd_A          217 G----------ID-MEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTK  285 (474)
T ss_dssp             S----------CC-HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCT
T ss_pred             c----------cC-HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCC
Confidence            0          00 123345666777889999999999999877766 77764     345689999999999977543 


Q ss_pred             ---HHHhcCC
Q 009027          264 ---VKQIRSG  270 (546)
Q Consensus       264 ---r~ql~~~  270 (546)
                         .+.+++.
T Consensus       286 ~l~l~~~g~~  295 (474)
T 1zmd_A          286 NLGLEELGIE  295 (474)
T ss_dssp             TSSHHHHTCC
T ss_pred             cCCchhcCCc
Confidence               4555543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.37  E-value=0.00045  Score=80.65  Aligned_cols=108  Identities=17%  Similarity=0.182  Sum_probs=67.0

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      +|||||||| ++|+++|..|+++|++|+|||+.+.++. +.++.              +.             ..+  .+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG-~~~~~--------------~k-------------~~i--~~  177 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGG-TLLDT--------------AG-------------EQI--DG  177 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG-GGGGS--------------SC-------------CEE--TT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCc-eeccC--------------Cc-------------ccc--CC
Confidence            589999995 5799999999999999999999865431 00000              00             000  00


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEEE---------EE------cCCcEEEcCE
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVL---------LL------AEGKILSSHL  252 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~V---------~~------~~g~~i~Arl  252 (546)
                                   .....+...+.+.+.+. +++++.+++|.++..++....+         ..      .++.++++|.
T Consensus       178 -------------~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~  244 (965)
T 2gag_A          178 -------------MDSSAWIEQVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQ  244 (965)
T ss_dssp             -------------EEHHHHHHHHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEE
T ss_pred             -------------CCHHHHHHHHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCE
Confidence                         01123334455556554 8899999999887532211111         11      0123799999


Q ss_pred             EEEecCCC
Q 009027          253 IIDAMGNF  260 (546)
Q Consensus       253 VV~ADG~~  260 (546)
                      ||-|.|..
T Consensus       245 lVlATGs~  252 (965)
T 2gag_A          245 VVLATGAH  252 (965)
T ss_dssp             EEECCCEE
T ss_pred             EEECCCCc
Confidence            99999974

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.36  E-value=0.0013  Score=70.95  Aligned_cols=97  Identities=15%  Similarity=0.189  Sum_probs=74.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+.+-.                               .            
T Consensus       178 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------  214 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-------------------------------K------------  214 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-------------------------------T------------
T ss_pred             eEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-------------------------------c------------
Confidence            69999976 699999999999999999997652110                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEEEcCCcE-EEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~~~~g~~-i~ArlVV~ADG~~S~v  263 (546)
                                 ++ ..+.+.+.+.+++.|++++.+++++++..++++ +.|.+++|++ +.++.||-|.|.....
T Consensus       215 -----------~d-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          215 -----------FD-ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             -----------cc-hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence                       00 123345566777889999999999999876544 7788888887 9999999999987654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.36  E-value=0.00018  Score=77.71  Aligned_cols=31  Identities=32%  Similarity=0.434  Sum_probs=27.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHh-CCCeEEEEcC
Q 009027          110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVER  140 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~-~G~rVlLlEr  140 (546)
                      +|||+||||| +|+++|..|++ .|++|+|||+
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            6999999965 68889999999 9999999994

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.34  E-value=0.0014  Score=68.72  Aligned_cols=102  Identities=19%  Similarity=0.331  Sum_probs=76.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+.+-..                 .                        
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------~------------------------  184 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-----------------A------------------------  184 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------T------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc-----------------c------------------------
Confidence            469999976 6999999999999999999987521100                 0                        


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHHh
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI  267 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql  267 (546)
                                  ++ ..+.+.+.+.+++.|++++.+++++++.  ++  .|++++|+++.++.||-|.|...  .+.+.+
T Consensus       185 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~  247 (408)
T 2gqw_A          185 ------------AP-ATLADFVARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIGVLANDALARAA  247 (408)
T ss_dssp             ------------SC-HHHHHHHHHHHHHTTCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSCEEECCHHHHHH
T ss_pred             ------------cC-HHHHHHHHHHHHHcCcEEEeCCEEEEEE--CC--EEEECCCCEEEcCEEEECcCCCccHHHHHhC
Confidence                        00 1234556667778899999999999987  34  66777888999999999999764  456666


Q ss_pred             cCC
Q 009027          268 RSG  270 (546)
Q Consensus       268 ~~~  270 (546)
                      ++.
T Consensus       248 gl~  250 (408)
T 2gqw_A          248 GLA  250 (408)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            554

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.31  E-value=0.001  Score=71.31  Aligned_cols=98  Identities=15%  Similarity=0.129  Sum_probs=76.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+|+.+..-.                               .           
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~-----------  223 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-------------------------------G-----------  223 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------------------T-----------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-------------------------------c-----------
Confidence            369999976 699999999999999999997752100                               0           


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC----CcEEEcCEEEEecCCChHH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE----GKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~----g~~i~ArlVV~ADG~~S~v  263 (546)
                                  .+ ..+.+.+.+.+++.|++++.++++.++..+++++.|++++    |+++.++.||-|.|.....
T Consensus       224 ------------~~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          224 ------------AD-RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             ------------SC-HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             ------------cC-HHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence                        00 1233455667778899999999999998888788888776    6789999999999987654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.30  E-value=0.00032  Score=75.67  Aligned_cols=43  Identities=19%  Similarity=0.269  Sum_probs=35.0

Q ss_pred             hcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          217 SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       217 ~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      +.|++++.+++|++++..+.  +|.+++|+++.++.||.|+|...
T Consensus       102 ~~gv~~~~g~~v~~id~~~~--~V~~~~g~~i~yd~lviATGs~p  144 (493)
T 1m6i_A          102 NGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTP  144 (493)
T ss_dssp             TCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEE
T ss_pred             cCCeEEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECCCCCC
Confidence            46889999999998875543  56677888999999999999753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.30  E-value=0.0011  Score=71.30  Aligned_cols=98  Identities=12%  Similarity=0.153  Sum_probs=75.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC---CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          111 FDVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~---G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      -.|+||||| .|+-+|..|++.   |.+|.++|+.+..-                     .          .        
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l---------------------~----------~--------  228 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL---------------------R----------G--------  228 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS---------------------T----------T--------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc---------------------c----------c--------
Confidence            369999976 699999999998   99999999875210                     0          0        


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                                     ++ ..+.+.+.+.+++.|++++.+++++++..+++ .+.|++++|+++.++.||-|.|.....
T Consensus       229 ---------------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          229 ---------------FD-SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             ---------------SC-HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             ---------------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence                           00 12345566677788999999999999987665 477888888899999999999987654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.29  E-value=0.00017  Score=77.44  Aligned_cols=55  Identities=15%  Similarity=0.106  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEE-eCCe-EEEEEcCCcEEEcCEEEEecCCC
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICT-YENA-AVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~-~~dg-v~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      .|-+.|.+.+++.|++++.+++|+++.. +++. +.|.+.+|++++|+.||.|.|..
T Consensus       257 ~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          257 GIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             HHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            4666777888889999999999999988 4444 45778788899999999999977

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.29  E-value=0.0018  Score=69.47  Aligned_cols=97  Identities=18%  Similarity=0.250  Sum_probs=74.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..-.                                          . 
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~-  236 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG------------------------------------------G-  236 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS------------------------------------------S-
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc------------------------------------------c-
Confidence            58999976 699999999999999999987652100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---C--cEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g--~~i~ArlVV~ADG~~S~v  263 (546)
                                 .+ ..+.+.+.+.+++.|++++.+++++++..+++++.|.+.+   |  +++.++.||-|.|.....
T Consensus       237 -----------~d-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          237 -----------MD-GEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST  302 (491)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred             -----------CC-HHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence                       00 1234555667777899999999999999888888887753   4  589999999999986543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.28  E-value=0.0017  Score=70.79  Aligned_cols=104  Identities=18%  Similarity=0.296  Sum_probs=78.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..-..                                           
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  189 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-------------------------------------------  189 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-------------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-------------------------------------------
Confidence            69999976 6999999999999999999986521000                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe-------------------CCeEEEEEcCCcEEEcC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-------------------ENAAVLLLAEGKILSSH  251 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-------------------~dgv~V~~~~g~~i~Ar  251 (546)
                                 .+ ..+.+.+.+.+++.|++++.+++++++..+                   ++.+.+.+.+|+++.|+
T Consensus       190 -----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D  257 (565)
T 3ntd_A          190 -----------VD-REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETD  257 (565)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEES
T ss_pred             -----------cC-HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcC
Confidence                       00 123445566677889999999999999873                   56778888888899999


Q ss_pred             EEEEecCCCh--HHHHHhcCC
Q 009027          252 LIIDAMGNFS--PVVKQIRSG  270 (546)
Q Consensus       252 lVV~ADG~~S--~vr~ql~~~  270 (546)
                      .||-|.|...  .+.+.+++.
T Consensus       258 ~vi~a~G~~p~~~l~~~~g~~  278 (565)
T 3ntd_A          258 LLIMAIGVRPETQLARDAGLA  278 (565)
T ss_dssp             EEEECSCEEECCHHHHHHTCC
T ss_pred             EEEECcCCccchHHHHhCCcc
Confidence            9999999854  355566544

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.28  E-value=0.0016  Score=69.07  Aligned_cols=96  Identities=19%  Similarity=0.061  Sum_probs=74.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..-.                                           .
T Consensus       149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------~  185 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP-------------------------------------------K  185 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------------------T
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc-------------------------------------------c
Confidence            59999976 699999999999999999998752100                                           0


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      .          ++ ..+.+.+.+.+++.|++++.+++++++...++++.|.++++ ++.|+.||-|.|....
T Consensus       186 ~----------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          186 Y----------FD-KEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQ  245 (452)
T ss_dssp             T----------CC-HHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCC
T ss_pred             c----------CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCC
Confidence            0          00 12445667777788999999999999987778887888666 8999999999998643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.27  E-value=0.002  Score=69.42  Aligned_cols=105  Identities=20%  Similarity=0.187  Sum_probs=78.6

Q ss_pred             cEEEEcch-HHHHHHHHHHh----CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          112 DVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~----~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .|+||||| .|+-+|..|++    .|.+|.++++.+.+-                     .                   
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~---------------------~-------------------  221 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM---------------------G-------------------  221 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT---------------------T-------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc---------------------c-------------------
Confidence            59999976 69999998876    488999998653100                     0                   


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH--HH
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VV  264 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~--vr  264 (546)
                               ..+    + ..+.+.+.+.+++.|++++.+++++++..+++.+.|.+++|+++.|++||-|.|....  +.
T Consensus       222 ---------~~l----~-~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~  287 (493)
T 1m6i_A          222 ---------KIL----P-EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELA  287 (493)
T ss_dssp             ---------TTS----C-HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTH
T ss_pred             ---------ccC----C-HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHH
Confidence                     000    0 1344556677788899999999999998777778888888999999999999997653  56


Q ss_pred             HHhcCC
Q 009027          265 KQIRSG  270 (546)
Q Consensus       265 ~ql~~~  270 (546)
                      +.+++.
T Consensus       288 ~~~gl~  293 (493)
T 1m6i_A          288 KTGGLE  293 (493)
T ss_dssp             HHHTCC
T ss_pred             HHcCCc
Confidence            666543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.26  E-value=0.00078  Score=71.76  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=74.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+|+.+..-..                                          
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  215 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------------------------------  215 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------------------------------
Confidence            369999976 6999999999999999999987521100                                          


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc---CC--cEEEcCEEEEecCCChHH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---~g--~~i~ArlVV~ADG~~S~v  263 (546)
                                  .+ ..+.+.+.+.+++.|++++.+++++++..+++++.|+++   +|  +++.++.||.|.|..+..
T Consensus       216 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  281 (470)
T 1dxl_A          216 ------------MD-AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT  281 (470)
T ss_dssp             ------------SC-HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred             ------------cc-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence                        00 123455666777889999999999999876666777764   44  589999999999987643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.25  E-value=0.0021  Score=68.33  Aligned_cols=104  Identities=22%  Similarity=0.302  Sum_probs=76.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+|+.+..-.                               .           
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~-----------  209 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-------------------------------N-----------  209 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------T-----------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------------------c-----------
Confidence            369999976 699999999999999999998752100                               0           


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc-CC--cEEEcCEEEEecCCChHH---
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EG--KILSSHLIIDAMGNFSPV---  263 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-~g--~~i~ArlVV~ADG~~S~v---  263 (546)
                                  ++ ..+.+.+.+.+++.|++++.+++++++..+++++.|.++ +|  +++.++.||-|.|.....   
T Consensus       210 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l  276 (464)
T 2a8x_A          210 ------------ED-ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGY  276 (464)
T ss_dssp             ------------SC-HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSS
T ss_pred             ------------cC-HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCC
Confidence                        00 123344566667789999999999999877767777775 56  589999999999976543   


Q ss_pred             -HHHhcC
Q 009027          264 -VKQIRS  269 (546)
Q Consensus       264 -r~ql~~  269 (546)
                       .+.+++
T Consensus       277 ~~~~~gl  283 (464)
T 2a8x_A          277 GLDKAGV  283 (464)
T ss_dssp             CHHHHTC
T ss_pred             CchhcCC
Confidence             455544

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.25  E-value=0.0019  Score=68.70  Aligned_cols=95  Identities=22%  Similarity=0.258  Sum_probs=74.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..               |      .                  +    
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~---------------l------~------------------~----  214 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARLGSKVTVLARNTLF---------------F------R------------------E----  214 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT---------------T------T------------------S----
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc---------------C------C------------------C----
Confidence            58999976 6999999999999999999976420               0      0                  0    


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                                  + ..+.+.+.+.+++.|++++.+++++++..+++.+.|.++ +.++.++.||-|.|..+..
T Consensus       215 ------------~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          215 ------------D-PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNT  273 (467)
T ss_dssp             ------------C-HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred             ------------C-HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence                        0 123455666777889999999999999887777777775 5589999999999987653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.23  E-value=0.003  Score=66.87  Aligned_cols=96  Identities=18%  Similarity=0.272  Sum_probs=72.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..-..                 .                         
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------~-------------------------  188 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK-----------------Y-------------------------  188 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT-----------------T-------------------------
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh-----------------h-------------------------
Confidence            59999976 6999999999999999999986521000                 0                         


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                                 ++ ..+.+.+.+.+++.|++++.+++++++..+++.+. |.+ +|+++.|+.||-|.|....
T Consensus       189 -----------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          189 -----------FD-KEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEEC
T ss_pred             -----------hh-hhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCCC
Confidence                       00 12345566677788999999999999987666665 444 7789999999999997654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.23  E-value=0.0022  Score=68.68  Aligned_cols=96  Identities=20%  Similarity=0.243  Sum_probs=71.4

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .-+|+||||| .|+-+|..|++.|.+|.|+|+.+....                  .                       
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------~-----------------------  224 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT------------------I-----------------------  224 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS------------------S-----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh------------------c-----------------------
Confidence            3579999976 699999999999999999997642100                  0                       


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEcCEEEEecCCChH
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                                   ++ ..+.+.+.+.+++.|++++.+++++++..+ +.+ .|.+ ++.++.|+.||.|.|..+.
T Consensus       225 -------------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          225 -------------YD-GDMAEYIYKEADKHHIEILTNENVKAFKGN-ERVEAVET-DKGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             -------------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SBEEEEEE-TTEEEECSEEEECSCEEES
T ss_pred             -------------CC-HHHHHHHHHHHHHcCcEEEcCCEEEEEEcC-CcEEEEEE-CCCEEEcCEEEECcCCCcC
Confidence                         00 123455667777889999999999998764 444 3555 4558999999999998653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.22  E-value=0.0024  Score=63.70  Aligned_cols=92  Identities=16%  Similarity=0.134  Sum_probs=67.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                          . 
T Consensus       147 ~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------~-  183 (320)
T 1trb_A          147 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------E-  183 (320)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC------------------------------------------C-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc------------------------------------------C-
Confidence            69999965 699999999999999999997642110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcC----C--cEEEcCEEEEecCCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAE----G--KILSSHLIIDAMGNF  260 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~----g--~~i~ArlVV~ADG~~  260 (546)
                                    ..+.+.+.+.+.+.|++++.+++++++..+++.+. |.+++    |  .++.++.||-|.|..
T Consensus       184 --------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~  246 (320)
T 1trb_A          184 --------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS  246 (320)
T ss_dssp             --------------HHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEE
T ss_pred             --------------HHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCC
Confidence                          11233455667778999999999999987664432 55543    4  479999999998854

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.21  E-value=0.00021  Score=77.17  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=30.8

Q ss_pred             CcccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTLK  144 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~-~G~rVlLlEr~~~~  144 (546)
                      .+||+|||||| +|+.+|..|++ .|++|+|||+...+
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~   53 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP   53 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence            37999999965 69999999997 78999999998653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.21  E-value=0.0023  Score=68.95  Aligned_cols=97  Identities=21%  Similarity=0.299  Sum_probs=74.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhC---CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          112 DVIVCGGT-LGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~---G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .|+||||| .|+-+|..|++.   |.+|.|+|+.+.+-.                               .         
T Consensus       193 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-------------------------------~---------  232 (495)
T 2wpf_A          193 RVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-------------------------------G---------  232 (495)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-------------------------------T---------
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-------------------------------c---------
Confidence            69999976 699999999998   999999997642100                               0         


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCEEEEecCCChHH
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~ArlVV~ADG~~S~v  263 (546)
                                    ++ ..+.+.+.+.+++.|++++.+++++++..+++ .+.|++++|+++.+++||-|.|.....
T Consensus       233 --------------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          233 --------------FD-ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             --------------SC-HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             --------------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence                          00 12334556677788999999999999987654 477888888899999999999987654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.17  E-value=0.0012  Score=70.39  Aligned_cols=96  Identities=21%  Similarity=0.239  Sum_probs=70.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+|+.+.+...                                          
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  209 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------------------------------------------  209 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------------------------------
Confidence            369999975 6999999999999999999987521100                                          


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCCChHH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~i~ArlVV~ADG~~S~v  263 (546)
                                  .+ ..+.+.+.+.+.+.|++++.+++++++..  +.+.++..+|  +++.++.||.|.|.....
T Consensus       210 ------------~~-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          210 ------------YD-SELTAPVAESLKKLGIALHLGHSVEGYEN--GCLLANDGKGGQLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             ------------SC-HHHHHHHHHHHHHHTCEEETTCEEEEEET--TEEEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEe--CCEEEEECCCceEEEECCEEEECcCCCcCC
Confidence                        00 12334455666778999999999999875  3466664356  589999999999987643

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.15  E-value=0.00028  Score=73.90  Aligned_cols=35  Identities=31%  Similarity=0.526  Sum_probs=31.0

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~~~~  144 (546)
                      ++||+||||| .|+++|..|+++ |++|+|+|++..+
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            6999999976 599999999998 9999999998644

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.13  E-value=0.00037  Score=72.89  Aligned_cols=43  Identities=7%  Similarity=0.004  Sum_probs=36.5

Q ss_pred             hcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          217 SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       217 ~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      ..+.+++.+++|++|..++++++|++.+|+ ++||.||-|.+..
T Consensus       215 ~l~~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          215 TLEHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLE  257 (424)
T ss_dssp             HSSSCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHH
T ss_pred             hhcceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHH
Confidence            345688999999999988888998887775 9999999999865

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.13  E-value=0.00037  Score=73.16  Aligned_cols=36  Identities=33%  Similarity=0.501  Sum_probs=31.7

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      .++||+||||| +|+++|..|+++|++|+|+|++...
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            47999999976 5999999999999999999998654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.11  E-value=0.0004  Score=74.26  Aligned_cols=52  Identities=15%  Similarity=0.181  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEcCEEEEecCCC
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNF  260 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g---~~i~ArlVV~ADG~~  260 (546)
                      |-+.|.+++.+  ++|+.+++|++|..++++++|++.+|   ++++||.||.|....
T Consensus       241 l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          241 IYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH  295 (489)
T ss_dssp             HHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred             HHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence            44445544421  68999999999999999999988776   589999999998753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.10  E-value=0.0035  Score=67.37  Aligned_cols=96  Identities=21%  Similarity=0.189  Sum_probs=73.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+....                  .                        
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------~------------------------  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN------------------L------------------------  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT------------------C------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc------------------c------------------------
Confidence            369999975 699999999999999999998753110                  0                        


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEcCEEEEecCCChH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSP  262 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~--~g--~~i~ArlVV~ADG~~S~  262 (546)
                                  .+ ..+.+.+.+.+.+. ++++.+++++++..+++++.|++.  +|  +++.++.||-|.|....
T Consensus       213 ------------~d-~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          213 ------------QD-EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             ------------CC-HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred             ------------CC-HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence                        00 12334455555666 999999999999888888888875  56  58999999999998654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.09  E-value=0.0036  Score=68.30  Aligned_cols=97  Identities=12%  Similarity=0.147  Sum_probs=77.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .++||||| +|+=+|..+++.|.+|+|+++....+                                           . 
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~-------------------------------------------~-  260 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR-------------------------------------------G-  260 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST-------------------------------------------T-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc-------------------------------------------c-
Confidence            59999976 69999999999999999998643110                                           0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr  264 (546)
                                 .| ..+-+.+.+.+++.|++++.++.+..+...++.+.|.+.++.++.++.|+.|.|+.-.+.
T Consensus       261 -----------~D-~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~  322 (542)
T 4b1b_A          261 -----------FD-QQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID  322 (542)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred             -----------cc-hhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence                       01 123345566777889999999999999999999999998888999999999999875543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.06  E-value=0.00045  Score=73.15  Aligned_cols=57  Identities=16%  Similarity=0.127  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      .+-+.|.+.+++.|++++.+++|+++..+++++++...+|++++|+.||.|.|..+.
T Consensus       235 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          235 ELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             HHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence            566778888888899999999999999888887643457889999999999999874

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.05  E-value=0.00034  Score=72.43  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=30.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      +|||+||||| .|+++|..|+++|++|+|+|++..+
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            3799999976 5999999999999999999997654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.03  E-value=0.00043  Score=74.25  Aligned_cols=57  Identities=21%  Similarity=0.247  Sum_probs=43.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-c-------------cc--cCCHHHHHHHHHcCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-Q-------------EW--NISRKELLELVESGIL  166 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~-r-------------~~--~Is~~~l~~L~~lGl~  166 (546)
                      .+||+||||| .|+++|+.|+++|++|+|+|++..++.. .             .|  .-.+...+.++++|+.
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~   86 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLR   86 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCc
Confidence            5899999976 5999999999999999999998765421 0             01  1235677888999974

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.03  E-value=0.0034  Score=66.90  Aligned_cols=97  Identities=16%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+..-.                                           
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  217 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-------------------------------------------  217 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------------------------------------------
Confidence            369999975 699999999999999999998642100                                           


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEcCEEEEecCCChH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSP  262 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g---~~i~ArlVV~ADG~~S~  262 (546)
                       .          .+ ..+.+.+.+.+++.|++++.+++++++..+++.+.|.+.++   +++.++.||-|.|....
T Consensus       218 -~----------~~-~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~  281 (476)
T 3lad_A          218 -A----------VD-EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPV  281 (476)
T ss_dssp             -T----------SC-HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEEC
T ss_pred             -c----------cC-HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCccc
Confidence             0          00 12345556677788999999999999988888888887654   58999999999997654

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.02  E-value=0.00047  Score=75.17  Aligned_cols=35  Identities=34%  Similarity=0.479  Sum_probs=31.2

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      .+||+|||||| +|+++|..|++.|++|+|||+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            36999999965 699999999999999999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.01  E-value=0.0033  Score=67.43  Aligned_cols=96  Identities=18%  Similarity=0.213  Sum_probs=71.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+|+.+..-..                 .                        
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------~------------------------  233 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG-----------------Y------------------------  233 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------T------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh-----------------H------------------------
Confidence            369999976 6999999999999999999987521000                 0                        


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEcCEEEEecCCChH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                                  ++ ..+.+.+.+.+++.|++++.+++++++.. ++.+ .|.+ +|+++.++.||-|.|....
T Consensus       234 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          234 ------------YD-RDLTDLMAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             ------------SC-HHHHHHHHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred             ------------HH-HHHHHHHHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence                        00 12345566777888999999999999875 3433 3555 6778999999999997654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.00  E-value=0.00044  Score=74.51  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=31.6

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +|||+||||| +|+++|..|+++|++|+||||.+..+
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~~GG   44 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGAYGT   44 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSCSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            5999999965 68889999999999999999987555

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.98  E-value=0.0024  Score=65.97  Aligned_cols=97  Identities=22%  Similarity=0.352  Sum_probs=71.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+.+-                  . +                        
T Consensus       145 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------~-~------------------------  181 (367)
T 1xhc_A          145 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL------------------G-L------------------------  181 (367)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT------------------T-C------------------------
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec------------------c-C------------------------
Confidence            68999975 69999999999999999999875210                  0 0                        


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH--HHHHhc
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR  268 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~--vr~ql~  268 (546)
                                  + ..+.+.+.+.+++.|++++.+++++++.  .+.  |++++|+ +.++.||.|.|....  +.+.++
T Consensus       182 ------------~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~~~--v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~g  243 (367)
T 1xhc_A          182 ------------D-EELSNMIKDMLEETGVKFFLNSELLEAN--EEG--VLTNSGF-IEGKVKICAIGIVPNVDLARRSG  243 (367)
T ss_dssp             ------------C-HHHHHHHHHHHHHTTEEEECSCCEEEEC--SSE--EEETTEE-EECSCEEEECCEEECCHHHHHTT
T ss_pred             ------------C-HHHHHHHHHHHHHCCCEEEcCCEEEEEE--eeE--EEECCCE-EEcCEEEECcCCCcCHHHHHhCC
Confidence                        0 1233455666778899999999999886  333  5666777 999999999996644  455555


Q ss_pred             C
Q 009027          269 S  269 (546)
Q Consensus       269 ~  269 (546)
                      +
T Consensus       244 l  244 (367)
T 1xhc_A          244 I  244 (367)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=96.97  E-value=0.00045  Score=74.62  Aligned_cols=41  Identities=12%  Similarity=0.130  Sum_probs=35.8

Q ss_pred             CEEEeCceEEEEEEe-CCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          220 GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       220 ~~v~~~t~v~~i~~~-~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      ++|+.+++|++|..+ ++++.|++.+|++++|+.||.|.+..
T Consensus       215 ~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~  256 (516)
T 1rsg_A          215 NWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQS  256 (516)
T ss_dssp             GGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHH
T ss_pred             CEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHH
Confidence            479999999999886 66799999888899999999998743

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.95  E-value=0.0039  Score=66.34  Aligned_cols=96  Identities=13%  Similarity=0.213  Sum_probs=74.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+..-                     .                     .
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l---------------------~---------------------~  208 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL---------------------S---------------------R  208 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------------------T---------------------T
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------------------c---------------------c
Confidence            369999975 69999999999999999999875210                     0                     0


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EEEE-EcCCcEEEcCEEEEecCCChH
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLL-LAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~V~-~~~g~~i~ArlVV~ADG~~S~  262 (546)
                                  ++ ..+.+.+.+.+++.|++++.+++++++..++++ +.|. +++|+ +.++.||-|.|..+.
T Consensus       209 ------------~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          209 ------------FD-QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPN  269 (463)
T ss_dssp             ------------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred             ------------cC-HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence                        00 123456677778889999999999999887666 6788 77887 999999999998654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.95  E-value=0.00067  Score=70.67  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=30.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC-CCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN-TLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~-~~~  144 (546)
                      .+||+||||| +|+++|..|+++|++|+|+|++ ...
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            5899999976 5999999999999999999998 543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.90  E-value=0.0057  Score=65.40  Aligned_cols=94  Identities=14%  Similarity=0.131  Sum_probs=70.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++......                        +                   
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~------------------------~-------------------  225 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRG------------------------F-------------------  225 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTT------------------------S-------------------
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcc------------------------c-------------------
Confidence            58999975 699999999999999999987421000                        0                   


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCc-----EEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGK-----ILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~-----~i~ArlVV~ADG~~S  261 (546)
                                  + ..+.+.+.+.+.+.|++++.++++.++...++ .+.|++.++.     ++.++.||-|.|...
T Consensus       226 ------------d-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          226 ------------D-QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             ------------C-HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred             ------------C-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccccc
Confidence                        0 12334556677788999999999999987655 4667765543     799999999999754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.89  E-value=0.0045  Score=62.93  Aligned_cols=102  Identities=19%  Similarity=0.139  Sum_probs=70.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|.-+|..|++.|.+|.++++.+.....                              .+.+         
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~------------------------------~~d~---------  208 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP------------------------------DADP---------  208 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECC----------------------------------------C---------
T ss_pred             EEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC------------------------------CCCC---------
Confidence            69999976 6999999999999999999987521100                              0000         


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEE-cCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILS-SHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~-ArlVV~ADG~~S  261 (546)
                      ...        ++ ..+.+.+.+.+.+.| ++++.++++.++..+++.+.|++.+|+++. ++.||-|.|...
T Consensus       209 ~~~--------~~-~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~  272 (369)
T 3d1c_A          209 SVR--------LS-PYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDA  272 (369)
T ss_dssp             TTS--------CC-HHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCG
T ss_pred             Ccc--------CC-HHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCC
Confidence            000        01 233455666667786 999999999999877888888888887665 588888988654

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.86  E-value=0.00062  Score=74.97  Aligned_cols=35  Identities=31%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL  143 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G-~rVlLlEr~~~  143 (546)
                      .+||+|||||| +|+++|..|++.| ++|+|||+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            36999999965 7999999999987 79999999876

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.83  E-value=0.0039  Score=62.35  Aligned_cols=89  Identities=18%  Similarity=0.034  Sum_probs=64.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+....                                           
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------------------------------------------  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------------------------------------------  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------------------------------------------
Confidence            359999965 699999999999999999997652110                                           


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE-EEEcC-----CcEEEcCEEEEecCCC
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAE-----GKILSSHLIIDAMGNF  260 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~~-----g~~i~ArlVV~ADG~~  260 (546)
                                        .+.+.+++.+. |++++.+++++++..+++++. |.+.+     +.++.+++||-|.|..
T Consensus       211 ------------------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~  270 (338)
T 3itj_A          211 ------------------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHT  270 (338)
T ss_dssp             ------------------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEE
T ss_pred             ------------------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCC
Confidence                              01123344444 899999999999987766443 55544     3579999999999854

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=96.82  E-value=0.00086  Score=74.50  Aligned_cols=36  Identities=25%  Similarity=0.486  Sum_probs=32.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +||||||||| +|+++|..|+++|++|+|||+....+
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            6999999965 69999999999999999999987655

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.81  E-value=0.011  Score=62.58  Aligned_cols=132  Identities=11%  Similarity=0.046  Sum_probs=77.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCC--cccc---cCCHHHHHHHHHcCCCCcccchhhhhhccCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGR--EQEW---NISRKELLELVESGILVEDDIDEATATKFNP  181 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~--~r~~---~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~  181 (546)
                      .-.|+||||| .|+=+|..|++.  |.+|.+++|......  ...+   ..++...+.+..+.-    +....+..... 
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~----~~~~~~~~~~~-  301 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREH----AERERLLREYH-  301 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCH----HHHHHHHHHTG-
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCH----HHHHHHHHHhh-
Confidence            3479999976 599999999988  999999998864321  1000   122222222222210    00000000000 


Q ss_pred             CcccccCCccccccccccceeCHH----HHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEEEEEc---CCc--EEEcC
Q 009027          182 NRCGFEGKGEIWVEDILNLGVSPA----KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSH  251 (546)
Q Consensus       182 ~~v~f~~~~~l~~~~~l~~~V~~~----~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~---~g~--~i~Ar  251 (546)
                              ...+      -.++..    ....+..+++.. .|++++.+++|+++..+++++.|++.   +|+  ++.+|
T Consensus       302 --------~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D  367 (463)
T 3s5w_A          302 --------NTNY------SVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYD  367 (463)
T ss_dssp             --------GGTS------SCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEES
T ss_pred             --------ccCC------CcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECC
Confidence                    0000      012222    222333333333 58899999999999998889888886   565  59999


Q ss_pred             EEEEecCCC
Q 009027          252 LIIDAMGNF  260 (546)
Q Consensus       252 lVV~ADG~~  260 (546)
                      +||-|.|..
T Consensus       368 ~Vv~AtG~~  376 (463)
T 3s5w_A          368 AVILATGYE  376 (463)
T ss_dssp             EEEECCCEE
T ss_pred             EEEEeeCCC
Confidence            999999954

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.79  E-value=0.0017  Score=68.49  Aligned_cols=102  Identities=19%  Similarity=0.108  Sum_probs=62.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G--~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .||||||| +|+++|..|++.+  ++|+|||+++.-...      +...+.  -.|..+.             ..+    
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~------p~l~~v--~~g~~~~-------------~~i----   58 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT------PAFPHL--AMGWRKF-------------EDI----   58 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG------GGHHHH--HHTCSCG-------------GGS----
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccC------ccHHHH--hcCCCCH-------------HHh----
Confidence            49999965 6888999999765  899999987632111      100000  1122111             000    


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                          ..+  +             .+.+.+.|++++.+ +|++++.+.  -+|++++|+++..|.||-|.|..
T Consensus        59 ----~~~--~-------------~~~~~~~gv~~i~~-~v~~Id~~~--~~V~~~~g~~i~YD~LViAtG~~  108 (430)
T 3hyw_A           59 ----SVP--L-------------APLLPKFNIEFINE-KAESIDPDA--NTVTTQSGKKIEYDYLVIATGPK  108 (430)
T ss_dssp             ----EEE--S-------------TTTGGGGTEEEECS-CEEEEETTT--TEEEETTCCEEECSEEEECCCCE
T ss_pred             ----hhc--H-------------HHHHHHCCcEEEEe-EEEEEECCC--CEEEECCCCEEECCEEEEeCCCC
Confidence                000  0             00122457888765 688776544  35677889999999999999975

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.75  E-value=0.0006  Score=74.36  Aligned_cols=34  Identities=32%  Similarity=0.580  Sum_probs=30.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      +||+|||||| +|+.+|..|++ |.+|+|||+.+..
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            6999999965 69999999999 9999999998754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=96.74  E-value=0.00096  Score=71.43  Aligned_cols=40  Identities=8%  Similarity=0.033  Sum_probs=34.7

Q ss_pred             EEEeCceEEEEEEeCCeEEEEEcCCc----EEEcCEEEEecCCC
Q 009027          221 VIFEGYSVSSICTYENAAVLLLAEGK----ILSSHLIIDAMGNF  260 (546)
Q Consensus       221 ~v~~~t~v~~i~~~~dgv~V~~~~g~----~i~ArlVV~ADG~~  260 (546)
                      +|+.+++|++|..+++++.|++.+|+    +++||.||.|.+..
T Consensus       254 ~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~  297 (498)
T 2iid_A          254 KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR  297 (498)
T ss_dssp             GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH
T ss_pred             ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChH
Confidence            79999999999998889999887654    58999999999854

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.73  E-value=0.014  Score=57.83  Aligned_cols=89  Identities=18%  Similarity=0.063  Sum_probs=63.7

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+....      +                                    
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------~------------------------------------  181 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRC------A------------------------------------  181 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCS------C------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCC------C------------------------------------
Confidence            469999975 699999999999999999987642110      0                                    


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHH-hcCCEEEeCceEEEEEEeCCeE-EEEEc---CCc--EEEcCEEEEecCCC
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFI-SLGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~-~~G~~v~~~t~v~~i~~~~dgv-~V~~~---~g~--~i~ArlVV~ADG~~  260 (546)
                                    +     .+.+++. +.|++++.+++++++..+++++ .|.+.   +|+  ++.++.||-|.|..
T Consensus       182 --------------~-----~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  240 (311)
T 2q0l_A          182 --------------P-----ITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYD  240 (311)
T ss_dssp             --------------H-----HHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             --------------H-----HHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCc
Confidence                          0     0122333 3688999999999998775654 35544   565  79999999998844

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=96.71  E-value=0.0015  Score=68.29  Aligned_cols=34  Identities=26%  Similarity=0.168  Sum_probs=30.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      +||+||||| +|+.+|..||++|++|+|+|+.+.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~   36 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKR   36 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCc
Confidence            799999976 6999999999999999999987743

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.71  E-value=0.012  Score=62.72  Aligned_cols=96  Identities=14%  Similarity=0.142  Sum_probs=71.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+..-.                               .            
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------  225 (478)
T 3dk9_A          189 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-------------------------------S------------  225 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------------------T------------
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc-------------------------------c------------
Confidence            69999976 699999999999999999997642100                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EEEEEcC---C----cEEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAE---G----KILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~---g----~~i~ArlVV~ADG~~S  261 (546)
                                 .+ ..+.+.+.+.+.+.|++++.+++++++..++++  +.|.+.+   +    +++.++.||-|.|...
T Consensus       226 -----------~d-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p  293 (478)
T 3dk9_A          226 -----------FD-SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVP  293 (478)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEE
T ss_pred             -----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecccc
Confidence                       00 123345566677789999999999999877666  5676654   2    5799999999999764


Q ss_pred             H
Q 009027          262 P  262 (546)
Q Consensus       262 ~  262 (546)
                      .
T Consensus       294 ~  294 (478)
T 3dk9_A          294 N  294 (478)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.70  E-value=0.0071  Score=63.96  Aligned_cols=108  Identities=14%  Similarity=0.090  Sum_probs=66.3

Q ss_pred             EEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          113 VIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G--~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      ||||||| +|+++|..|++.|  .+|+|||+.+.....++ .+     ..+. -+...                     .
T Consensus         3 VvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-~l-----~~~~-~~~~~---------------------~   54 (437)
T 4eqs_A            3 IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC-AL-----PYVI-GEVVE---------------------D   54 (437)
T ss_dssp             EEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG-GH-----HHHH-TTSSC---------------------C
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc-hh-----HHHH-cCCcc---------------------c
Confidence            8999965 6999999999888  57999998764332221 01     0000 00000                     0


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC---CcEEEcCEEEEecCCCh
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GKILSSHLIIDAMGNFS  261 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~---g~~i~ArlVV~ADG~~S  261 (546)
                      ..      ..+...+..+       ..+.+++++.+++|+.++.....+.+....   +.++++|.||-|.|...
T Consensus        55 ~~------~~~~~~~~~~-------~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p  116 (437)
T 4eqs_A           55 RR------YALAYTPEKF-------YDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASA  116 (437)
T ss_dssp             GG------GTBCCCHHHH-------HHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEE
T ss_pred             hh------hhhhcCHHHH-------HHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcc
Confidence            00      0011122221       234589999999999988777776665432   33799999999999753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.67  E-value=0.0075  Score=66.11  Aligned_cols=102  Identities=17%  Similarity=0.246  Sum_probs=75.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                            
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------------------------------  224 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP--------------------------------------------  224 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT--------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc--------------------------------------------
Confidence            59999976 699999999999999999997642110                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh--HHHHHhc
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQIR  268 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S--~vr~ql~  268 (546)
                      .          .+ ..+.+.+.+.+++.|++++.+++++++..++++  |.+++|+++.++.||-|.|...  .+.+.++
T Consensus       225 ~----------~~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g  291 (588)
T 3ics_A          225 P----------ID-YEMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLKSGSVIQTDMLILAIGVQPESSLAKGAG  291 (588)
T ss_dssp             T----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEETTSCEEECSEEEECSCEEECCHHHHHTT
T ss_pred             c----------CC-HHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEECCCCEEEcCEEEEccCCCCChHHHHhcC
Confidence            0          00 123455666777889999999999998765454  5667888999999999999754  3555555


Q ss_pred             CC
Q 009027          269 SG  270 (546)
Q Consensus       269 ~~  270 (546)
                      +.
T Consensus       292 ~~  293 (588)
T 3ics_A          292 LA  293 (588)
T ss_dssp             CC
T ss_pred             ce
Confidence            43

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.65  E-value=0.0054  Score=62.44  Aligned_cols=93  Identities=18%  Similarity=0.159  Sum_probs=66.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+.....                                          .
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~------------------------------------------~  202 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH------------------------------------------G  202 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC------------------------------------------S
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC------------------------------------------H
Confidence            69999975 6999999999999999999987521100                                          0


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEE--cCC--cEEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLL--AEG--KILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~--~~g--~~i~ArlVV~ADG~~S  261 (546)
                                     .+.+.|.+..++.|++++.+++++++..+++.+ .|.+  .+|  .++.++.||-|.|...
T Consensus       203 ---------------~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p  263 (360)
T 3ab1_A          203 ---------------KTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKS  263 (360)
T ss_dssp             ---------------HHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCC
T ss_pred             ---------------HHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCC
Confidence                           011123334456789999999999998876643 3444  366  5799999999999553

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=96.65  E-value=0.0014  Score=68.33  Aligned_cols=36  Identities=25%  Similarity=0.455  Sum_probs=31.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ++||+||||| .|+++|..|+++|++|+|+|++...+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            4799999976 59999999999999999999976543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.61  E-value=0.0071  Score=62.68  Aligned_cols=102  Identities=19%  Similarity=0.124  Sum_probs=61.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G--~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      -||||||| +|+++|..|+++|  .+|+|||+++.-....   .+.   ..+  .|..+.                    
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p---~~~---~v~--~g~~~~--------------------   55 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCY---MSN---EVI--GGDREL--------------------   55 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECST---THH---HHH--HTSSCG--------------------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCcc---CHH---HHh--cCCCCH--------------------
Confidence            49999965 6888888898765  6999999876421110   000   000  011100                    


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                       ..+.        .+..        .+...|++++.+ +|++++.+.  -.|.+.+|+++..+.||.|.|...
T Consensus        56 -~~~~--------~~~~--------~~~~~gv~~i~~-~v~~id~~~--~~v~~~~g~~i~yd~LviAtG~~~  108 (401)
T 3vrd_B           56 -ASLR--------VGYD--------GLRAHGIQVVHD-SALGIDPDK--KLVKTAGGAEFAYDRCVVAPGIDL  108 (401)
T ss_dssp             -GGGE--------ECSH--------HHHHTTCEEECS-CEEEEETTT--TEEEETTSCEEECSEEEECCCEEE
T ss_pred             -HHHh--------hCHH--------HHHHCCCEEEEe-EEEEEEccC--cEEEecccceeecceeeeccCCcc
Confidence             0000        1111        123468888765 677765443  356677888999999999999753

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.60  E-value=0.0012  Score=72.71  Aligned_cols=34  Identities=29%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             CcccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNT  142 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~-~G~rVlLlEr~~  142 (546)
                      ..||+|||||| +|+++|..|++ .|++|+|||+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            37999999965 79999999996 489999999987

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.60  E-value=0.016  Score=58.09  Aligned_cols=93  Identities=13%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|.-+|..|++.|.+|.++++.+....                                          . 
T Consensus       154 ~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~------------------------------------------~-  190 (335)
T 2zbw_A          154 RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA------------------------------------------H-  190 (335)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS------------------------------------------C-
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc------------------------------------------c-
Confidence            69999976 699999999999999999998752110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc---CC--cEEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---~g--~~i~ArlVV~ADG~~S  261 (546)
                                    ..+.+.|.+.+++.|++++.++++.++..++....|.++   +|  +++.++.||-|.|...
T Consensus       191 --------------~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p  252 (335)
T 2zbw_A          191 --------------EASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYIT  252 (335)
T ss_dssp             --------------HHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             --------------HHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCC
Confidence                          001123455566779999999999999874332245554   56  5799999999998553

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.59  E-value=0.0012  Score=70.18  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=30.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      +|||+||||| +|+++|..|++.|++|+|+|+...
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   38 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKEL   38 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCCC
Confidence            6999999965 688899999999999999999854

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.59  E-value=0.012  Score=62.10  Aligned_cols=103  Identities=19%  Similarity=0.240  Sum_probs=73.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++|+.+..-.                               .            
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------  186 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR-------------------------------R------------  186 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-------------------------------T------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch-------------------------------h------------
Confidence            79999976 699999999999999999998652100                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC--hHHHHHhc
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF--SPVVKQIR  268 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~--S~vr~ql~  268 (546)
                      .          ++ ..+.+.+.+.+.+. ++++.++.+.++..++ .+.+...+++++.++.||-|.|..  +.+.+.++
T Consensus       187 ~----------~~-~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~g  253 (449)
T 3kd9_A          187 S----------FD-KEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGIKPNIELAKQLG  253 (449)
T ss_dssp             T----------SC-HHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCEEECCHHHHHTT
T ss_pred             h----------cC-HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCC
Confidence            0          00 12345566666667 9999999999886544 443334477889999999999975  34566665


Q ss_pred             CC
Q 009027          269 SG  270 (546)
Q Consensus       269 ~~  270 (546)
                      +.
T Consensus       254 l~  255 (449)
T 3kd9_A          254 VR  255 (449)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=96.55  E-value=0.0018  Score=69.56  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G-~rVlLlEr~~~~~  145 (546)
                      .+||+||||| .|+++|..|+++| .+|+|+|+...++
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPG   46 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            6899999976 5999999999998 7999999986543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.54  E-value=0.017  Score=61.79  Aligned_cols=95  Identities=19%  Similarity=0.240  Sum_probs=69.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++....+.                                            
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~--------------------------------------------  222 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRG--------------------------------------------  222 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT--------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEcCccccc--------------------------------------------
Confidence            59999975 699999999999999999987531100                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC-CeEEEEEcC---Cc--EEEcCEEEEecCCChH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLLAE---GK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~V~~~~---g~--~i~ArlVV~ADG~~S~  262 (546)
                                 ++ ..+.+.+.+.+.+.|++++.++++.++...+ +.+.|.+.+   |+  ++.++.||-|.|....
T Consensus       223 -----------~d-~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~  288 (488)
T 3dgz_A          223 -----------FD-QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE  288 (488)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred             -----------CC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence                       00 1233455667778899999999999998754 446666643   44  5899999999997643

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.43  E-value=0.0021  Score=68.40  Aligned_cols=55  Identities=5%  Similarity=0.038  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhc--------CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          206 KLIEIVKKRFISL--------GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       206 ~L~~~L~~~a~~~--------G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      .+.+.|.+++.+.        |++|+.+++|++|..++++++|++.+|++++|+.||.|.+..
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  269 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLG  269 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHH
Confidence            3444555555443        678999999999999999999999888899999999999853

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.43  E-value=0.0024  Score=68.17  Aligned_cols=36  Identities=31%  Similarity=0.395  Sum_probs=31.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+||+|||| ++|+++|..|+++|++|+|+|+....+
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~G  158 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMG  158 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            589999996 579999999999999999999986543

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.43  E-value=0.0027  Score=70.47  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeC--CeEE-EEEcCCcEEEcCEEEEecC
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAV-LLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~--dgv~-V~~~~g~~i~ArlVV~ADG  258 (546)
                      .|-+.|.+.++..|++++.+++|.+|..++  +.++ |...+|++++|+.||....
T Consensus       379 ~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~  434 (650)
T 1vg0_A          379 ELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDS  434 (650)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGG
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChh
Confidence            344566677888999999999999998877  4444 3446789999999997444

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.38  E-value=0.024  Score=55.84  Aligned_cols=89  Identities=18%  Similarity=0.121  Sum_probs=63.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+|+||| .|+-+|..|++.|.+|.++++.+....                                          . 
T Consensus       149 ~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------~-  185 (315)
T 3r9u_A          149 EVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA------------------------------------------A-  185 (315)
T ss_dssp             EEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS------------------------------------------C-
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC------------------------------------------C-
Confidence            69999965 699999999999999999987642100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEc--CCc--EEEcCEEEEecCCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~--~g~--~i~ArlVV~ADG~~  260 (546)
                                   +.    .+.+.+++.|++++.++++.++..+++.+. |.+.  +|+  ++.++.||-|.|..
T Consensus       186 -------------~~----~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~  243 (315)
T 3r9u_A          186 -------------PS----TVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLN  243 (315)
T ss_dssp             -------------HH----HHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEE
T ss_pred             -------------HH----HHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCC
Confidence                         00    111122467899999999999988775432 4443  665  79999999998843

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.37  E-value=0.0015  Score=71.68  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~-~G~rVlLlEr~~~~  144 (546)
                      +||+|||||| +|+.+|..|++ .|++|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5999999965 69999999998 79999999998654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.31  E-value=0.023  Score=56.59  Aligned_cols=88  Identities=15%  Similarity=0.089  Sum_probs=62.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                          . 
T Consensus       157 ~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~------------------------------------------~-  193 (319)
T 3cty_A          157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC------------------------------------------E-  193 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS------------------------------------------C-
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC------------------------------------------C-
Confidence            59999965 699999999999999999997642100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEc---CCc--EEEcCEEEEecCCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~---~g~--~i~ArlVV~ADG~~  260 (546)
                                        ..+.+++.+.|++++.+++++++..+++.+ .|.+.   +|+  ++.++.||-|.|..
T Consensus       194 ------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  251 (319)
T 3cty_A          194 ------------------NAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLI  251 (319)
T ss_dssp             ------------------HHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEE
T ss_pred             ------------------HHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCc
Confidence                              012333446799999999999997765422 34443   554  68999999988844

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.29  E-value=0.022  Score=56.39  Aligned_cols=88  Identities=17%  Similarity=0.108  Sum_probs=62.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                          . 
T Consensus       146 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------~-  182 (310)
T 1fl2_A          146 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA------------------------------------------D-  182 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS------------------------------------------C-
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCc------------------------------------------c-
Confidence            69999965 699999999999999999997652100                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeE-EEEEc---CCc--EEEcCEEEEecCCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv-~V~~~---~g~--~i~ArlVV~ADG~~  260 (546)
                                        +.+.+++.+ .|++++.+++++++..+++.+ .|.+.   +|+  ++.++.||-|.|..
T Consensus       183 ------------------~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  241 (310)
T 1fl2_A          183 ------------------QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLL  241 (310)
T ss_dssp             ------------------HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             ------------------HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCc
Confidence                              012233444 588999999999997665543 34443   243  78999999888743

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.13  E-value=0.0048  Score=69.75  Aligned_cols=37  Identities=19%  Similarity=0.183  Sum_probs=32.0

Q ss_pred             CCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       108 ~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      +..+||+|||| ++|+++|..|+++|++|+|+|+....
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            44689999996 56999999999999999999998654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.12  E-value=0.014  Score=61.61  Aligned_cols=91  Identities=15%  Similarity=0.265  Sum_probs=67.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..+++.|.+|.|+|+......                  ..                      ..
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~------------------~~----------------------d~  188 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK------------------LM----------------------DA  188 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCST------------------TS----------------------CG
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeeccccc------------------cc----------------------cc
Confidence            69999975 699999999999999999997752110                  00                      00


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                                     .+.+.+.+.+.+.|++++.+++++++.  ++  .|.+++|+++.+++||-|.|...
T Consensus       189 ---------------~~~~~~~~~l~~~gV~i~~~~~v~~~~--~~--~v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          189 ---------------DMNQPILDELDKREIPYRLNEEINAIN--GN--EITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             ---------------GGGHHHHHHHHHTTCCEEESCCEEEEE--TT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             ---------------hhHHHHHHHhhccceEEEeccEEEEec--CC--eeeecCCeEEeeeeEEEEeceec
Confidence                           011334556667899999999998763  33  35677899999999999999653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.10  E-value=0.035  Score=58.97  Aligned_cols=95  Identities=14%  Similarity=0.218  Sum_probs=68.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+..-..                                      +    
T Consensus       174 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~----  211 (466)
T 3l8k_A          174 DMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT--------------------------------------L----  211 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT--------------------------------------S----
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC--------------------------------------C----
Confidence            59999976 6999999999999999999986521100                                      0    


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC-CeEEEEEc--CCc--EEEcCEEEEecCCChHH
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLLA--EGK--ILSSHLIIDAMGNFSPV  263 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~-dgv~V~~~--~g~--~i~ArlVV~ADG~~S~v  263 (546)
                                 ++ ..+.+.+.+.+.   ++++.+++++++..++ +++.|.++  +|+  ++.++.||-|.|.....
T Consensus       212 -----------~d-~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~  274 (466)
T 3l8k_A          212 -----------ED-QDIVNTLLSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVI  274 (466)
T ss_dssp             -----------CC-HHHHHHHHHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECC
T ss_pred             -----------CC-HHHHHHHHhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCccc
Confidence                       00 012222333332   8999999999998877 78888887  565  89999999999976543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.10  E-value=0.041  Score=54.88  Aligned_cols=88  Identities=16%  Similarity=0.166  Sum_probs=61.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....      +                                     
T Consensus       154 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------~-------------------------------------  190 (325)
T 2q7v_A          154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA------N-------------------------------------  190 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS------C-------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc------c-------------------------------------
Confidence            59999965 699999999999999999997642110      0                                     


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEEEEEc---CCc--EEEcCEEEEecCCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~---~g~--~i~ArlVV~ADG~~  260 (546)
                                        ..+.+++.+ .|++++.+++++++..++....|.+.   +|+  ++.++.||-|.|..
T Consensus       191 ------------------~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  248 (325)
T 2q7v_A          191 ------------------KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHV  248 (325)
T ss_dssp             ------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             ------------------hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCC
Confidence                              011223333 58899999999998764332234443   564  78999999988844

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.07  E-value=0.004  Score=67.21  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      +||+|||||| +|+++|..|++.|++|+|||+..
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   38 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   38 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            6999999965 69999999999999999999876

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.06  E-value=0.0051  Score=68.73  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=32.1

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +..+||+||||| +|+.+|..|+++|++|+|+|+.+..+
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~g  409 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG  409 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            446899999965 68899999999999999999986543

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.06  E-value=0.0047  Score=66.75  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=30.5

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .+||+|||||| +|+++|..|++.|++|+|||+..
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            37999999965 69999999999999999999875

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=95.99  E-value=0.064  Score=57.88  Aligned_cols=95  Identities=14%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++....+.                                            
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~--------------------------------------------  247 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--------------------------------------------  247 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT--------------------------------------------
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccc--------------------------------------------
Confidence            59999975 699999999999999999987421000                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeC----CeEEEEE--cCC-c--EEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAAVLLL--AEG-K--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~----dgv~V~~--~~g-~--~i~ArlVV~ADG~~S  261 (546)
                                 +| ..+.+.+.+.+++.|++++.+++++++...+    +.+.|++  .++ +  ++.+++||-|.|...
T Consensus       248 -----------~d-~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          248 -----------FD-QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEE
T ss_pred             -----------CC-HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcc
Confidence                       00 1233455666778899999999888886543    3455544  344 2  578999999999764


Q ss_pred             H
Q 009027          262 P  262 (546)
Q Consensus       262 ~  262 (546)
                      .
T Consensus       316 ~  316 (519)
T 3qfa_A          316 C  316 (519)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=95.97  E-value=0.04  Score=54.37  Aligned_cols=90  Identities=18%  Similarity=0.090  Sum_probs=64.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+|+||| .|+-+|..|++.|.+|.++++.+....                                           
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA-------------------------------------------  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc-------------------------------------------
Confidence            369999975 699999999999999999997642110                                           


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeEEEEEcC---Cc--EEEcCEEEEecCCCh
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv~V~~~~---g~--~i~ArlVV~ADG~~S  261 (546)
                                   ++     .+.+++.+ .|++++.+++++++..++....|.+.+   |+  ++.+++||-|.|...
T Consensus       192 -------------~~-----~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p  251 (323)
T 3f8d_A          192 -------------QP-----IYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDP  251 (323)
T ss_dssp             -------------CH-----HHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEC
T ss_pred             -------------CH-----HHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCC
Confidence                         00     11223333 488999999999998765544466654   65  799999999998653

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.97  E-value=0.0045  Score=67.51  Aligned_cols=36  Identities=39%  Similarity=0.498  Sum_probs=31.3

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK  144 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~-G~rVlLlEr~~~~  144 (546)
                      .+||+|||||| .|+++|..|++. |.+|+|||+....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            36999999965 699999999998 9999999988643

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=95.94  E-value=0.065  Score=58.73  Aligned_cols=96  Identities=18%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+++....+.                                            
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~--------------------------------------------  323 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRSILLRG--------------------------------------------  323 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT--------------------------------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcCc--------------------------------------------
Confidence            59999976 699999999999999999997621000                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe------C---CeEEEE--EcCCcEEE--cCEEEEec
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY------E---NAAVLL--LAEGKILS--SHLIIDAM  257 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~------~---dgv~V~--~~~g~~i~--ArlVV~AD  257 (546)
                                 ++ ..+.+.+.+.+++.|++++.++.++++...      +   +.+.+.  ..+|+++.  ++.||-|.
T Consensus       324 -----------~d-~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~  391 (598)
T 2x8g_A          324 -----------FD-QQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAV  391 (598)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECS
T ss_pred             -----------CC-HHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEe
Confidence                       00 012233445566789999999988887543      2   445554  35676555  99999999


Q ss_pred             CCChHH
Q 009027          258 GNFSPV  263 (546)
Q Consensus       258 G~~S~v  263 (546)
                      |.....
T Consensus       392 G~~p~~  397 (598)
T 2x8g_A          392 GREPQL  397 (598)
T ss_dssp             CEEECG
T ss_pred             CCcccc
Confidence            976543

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=95.92  E-value=0.005  Score=67.79  Aligned_cols=36  Identities=28%  Similarity=0.564  Sum_probs=31.4

Q ss_pred             CcccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNTLK  144 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~-~G~rVlLlEr~~~~  144 (546)
                      .+||+|||||| +|+++|..|++ .|++|+|||+....
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            36999999965 69999999999 89999999988643

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=95.84  E-value=0.0076  Score=67.32  Aligned_cols=40  Identities=10%  Similarity=0.046  Sum_probs=35.4

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEEcC------CcEEEcCEEEEecC
Q 009027          219 GGVIFEGYSVSSICTYENAAVLLLAE------GKILSSHLIIDAMG  258 (546)
Q Consensus       219 G~~v~~~t~v~~i~~~~dgv~V~~~~------g~~i~ArlVV~ADG  258 (546)
                      +.+|+.+++|++|..++++++|++.+      +++++||.||.|..
T Consensus       410 ~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP  455 (662)
T 2z3y_A          410 GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLP  455 (662)
T ss_dssp             TCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCC
T ss_pred             cCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCC
Confidence            56899999999999999999998765      56899999998876

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=95.78  E-value=0.014  Score=57.14  Aligned_cols=83  Identities=13%  Similarity=0.078  Sum_probs=60.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+|+||| .|+-+|..|++.| +|.++++.+.       .++                                    
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~-------~~~------------------------------------  177 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV-------EPD------------------------------------  177 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC-------CCC------------------------------------
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC-------CCC------------------------------------
Confidence            369999965 6999999999999 9999976532       000                                    


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                                         +.+.+.+.+.|++++. ++++++..  ++ .|.+++|+++.+++||-|.|..
T Consensus       178 -------------------~~~~~~l~~~gv~i~~-~~v~~i~~--~~-~v~~~~g~~~~~D~vi~a~G~~  225 (297)
T 3fbs_A          178 -------------------ADQHALLAARGVRVET-TRIREIAG--HA-DVVLADGRSIALAGLFTQPKLR  225 (297)
T ss_dssp             -------------------HHHHHHHHHTTCEEEC-SCEEEEET--TE-EEEETTSCEEEESEEEECCEEE
T ss_pred             -------------------HHHHHHHHHCCcEEEc-ceeeeeec--CC-eEEeCCCCEEEEEEEEEccCcc
Confidence                               0123344567899885 88887753  33 6777788899999999998853

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.74  E-value=0.056  Score=53.93  Aligned_cols=88  Identities=20%  Similarity=0.137  Sum_probs=62.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                          . 
T Consensus       161 ~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~------------------------------------------~-  197 (333)
T 1vdc_A          161 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA------------------------------------------S-  197 (333)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------C-
T ss_pred             eEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc------------------------------------------c-
Confidence            69999976 699999999999999999998753110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHH-HHhcCCEEEeCceEEEEEEeCC--eE-EEEEc---CC--cEEEcCEEEEecCCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKR-FISLGGVIFEGYSVSSICTYEN--AA-VLLLA---EG--KILSSHLIIDAMGNF  260 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~-a~~~G~~v~~~t~v~~i~~~~d--gv-~V~~~---~g--~~i~ArlVV~ADG~~  260 (546)
                                        +.+.++ +.+.|++++.+++++++..+++  .+ .|.+.   +|  .++.++.||-|.|..
T Consensus       198 ------------------~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  258 (333)
T 1vdc_A          198 ------------------KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHE  258 (333)
T ss_dssp             ------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             ------------------HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCc
Confidence                              001112 2356889999999999987654  33 24443   34  479999999998854

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=95.70  E-value=0.028  Score=55.80  Aligned_cols=88  Identities=17%  Similarity=0.151  Sum_probs=63.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                          ..
T Consensus       156 ~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~------------------------------------------~~  193 (332)
T 3lzw_A          156 RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA------------------------------------------HE  193 (332)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS------------------------------------------CH
T ss_pred             EEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc------------------------------------------cH
Confidence            59999965 699999999999999999987642100                                          00


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC-----CcEEEcCEEEEecCCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-----GKILSSHLIIDAMGNF  260 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-----g~~i~ArlVV~ADG~~  260 (546)
                      .                   ..+++.+.|++++.++++.++..+++...|.+.+     +.++.+++||-|.|..
T Consensus       194 ~-------------------~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~  249 (332)
T 3lzw_A          194 H-------------------SVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFV  249 (332)
T ss_dssp             H-------------------HHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEE
T ss_pred             H-------------------HHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccC
Confidence            0                   0122456799999999999987665544455543     3479999999988843

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.69  E-value=0.015  Score=62.80  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=28.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ...||||||| +|+.+|..|++.+++|+|||+++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            4579999976 68888889999999999999875

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.56  E-value=0.06  Score=58.51  Aligned_cols=50  Identities=16%  Similarity=0.139  Sum_probs=35.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHH
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELV  161 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~  161 (546)
                      .|+||||| .|+-+|..|++.|.+|.|++|.+..-. ...-.++....+.|.
T Consensus       180 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~  231 (540)
T 3gwf_A          180 RVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIK  231 (540)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHH
T ss_pred             eEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHH
Confidence            69999976 599999999999999999999875211 111235655554454

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=95.53  E-value=0.012  Score=67.49  Aligned_cols=40  Identities=10%  Similarity=0.046  Sum_probs=34.5

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEEcC------CcEEEcCEEEEecC
Q 009027          219 GGVIFEGYSVSSICTYENAAVLLLAE------GKILSSHLIIDAMG  258 (546)
Q Consensus       219 G~~v~~~t~v~~i~~~~dgv~V~~~~------g~~i~ArlVV~ADG  258 (546)
                      +.+|+.+++|++|..++++|.|++.+      +.+++||.||.|--
T Consensus       581 ~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvP  626 (852)
T 2xag_A          581 GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLP  626 (852)
T ss_dssp             TCCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCC
T ss_pred             CCCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCC
Confidence            45799999999999999999998754      46899999998865

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.43  E-value=0.099  Score=55.57  Aligned_cols=48  Identities=23%  Similarity=0.227  Sum_probs=35.2

Q ss_pred             ccEEEEcch-HHHHHHHHHH--------------------hCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHH
Q 009027          111 FDVIVCGGT-LGIFIATALS--------------------FKGL-RVAIVERNTLKGREQEWNISRKELLELVE  162 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA--------------------~~G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~  162 (546)
                      -.|+||||| .|+=+|..|+                    +.|. +|.|++|......    ..+..++..|..
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~----~ft~~el~~l~~  215 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQV----AFTIKELREMIQ  215 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGC----CCCHHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhh----ccCHHHHHHhhc
Confidence            369999976 6999999998                    6788 6999998764322    356666665543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.35  E-value=0.011  Score=69.32  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~-rVlLlEr~~~~  144 (546)
                      .+||+|||| ++|+++|..|+++|+ +|+|+|+....
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            689999996 579999999999999 79999998644

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.25  E-value=0.049  Score=58.68  Aligned_cols=53  Identities=19%  Similarity=0.159  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE--cCCc----EEEcCEEEEecCCC
Q 009027          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEGK----ILSSHLIIDAMGNF  260 (546)
Q Consensus       206 ~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~~g~----~i~ArlVV~ADG~~  260 (546)
                      .+.+.+.+.+++.|++++.+++|+++  +++++.+..  .+|+    +|.|++||-|.|..
T Consensus       273 ~~~~~~~~~L~~~GV~v~~~~~v~~v--~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          273 KLSSYAQSHLENTSIKVHLRTAVAKV--EEKQLLAKTKHEDGKITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEE--CSSEEEEEEECTTSCEEEEEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHhcceeeecCceEEEE--eCCceEEEEEecCcccceeeeccCEEEEccCCc
Confidence            45566777888899999999999887  456665543  4553    69999999999953

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.19  E-value=0.014  Score=62.17  Aligned_cols=36  Identities=25%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCC--CeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKG--LRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G--~rVlLlEr~~~~~  145 (546)
                      .+||+|||| ++|+.+|..|+++|  ++|+|+|+.+.+.
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g   44 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   44 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC
Confidence            589999996 56999999999988  9999999987543

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=95.15  E-value=0.058  Score=54.13  Aligned_cols=89  Identities=19%  Similarity=0.083  Sum_probs=60.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.|+||||| .|+-+|..|++.|.+|.++++.+....                                          .
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~------------------------------------------~  193 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA------------------------------------------S  193 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS------------------------------------------C
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc------------------------------------------c
Confidence            369999965 699999999999999999997642100                                          0


Q ss_pred             ccccccccccceeCHHHHHHHHHHH-HHhcCCEEEeCceEEEEEEeCC--eEEEEE-cCC--cEEEcCEEEEecCCC
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKR-FISLGGVIFEGYSVSSICTYEN--AAVLLL-AEG--KILSSHLIIDAMGNF  260 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~-a~~~G~~v~~~t~v~~i~~~~d--gv~V~~-~~g--~~i~ArlVV~ADG~~  260 (546)
                      .                   .+.++ ..+.|++++.+++++++..+++  ++.+.. .+|  +++.++.||-|.|..
T Consensus       194 ~-------------------~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~  251 (335)
T 2a87_A          194 K-------------------IMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHE  251 (335)
T ss_dssp             T-------------------THHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEE
T ss_pred             H-------------------HHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCc
Confidence            0                   00111 2357889999999998875543  244432 134  478999999888843

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.14  E-value=0.012  Score=64.04  Aligned_cols=32  Identities=19%  Similarity=0.161  Sum_probs=28.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      .|+||||| .|.-+|..|++.|.+|.|++|.+.
T Consensus       187 rV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          187 RVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             eEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            59999976 599999999999999999999874

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.12  E-value=0.013  Score=62.45  Aligned_cols=36  Identities=17%  Similarity=0.239  Sum_probs=30.7

Q ss_pred             cccEEEEcc-hHHHHHHHHHHh-C------CCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSF-K------GLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~-~------G~rVlLlEr~~~~~  145 (546)
                      .+||+|||| ++|+.+|..|++ +      |++|+|||+.+.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~g   46 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   46 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCC
Confidence            589999996 568899999999 7      99999999986543

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.93  E-value=0.016  Score=60.29  Aligned_cols=83  Identities=22%  Similarity=0.264  Sum_probs=60.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+.+-..                                           
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~-------------------------------------------  184 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER-------------------------------------------  184 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT-------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh-------------------------------------------
Confidence            59999976 6999999999999999999987531100                                           


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      .          ++ ..+.+.+.+.+++.|++++.+++++++             |+++.+++||-|.|...
T Consensus       185 ~----------~~-~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------g~~~~~D~vv~a~G~~p  231 (385)
T 3klj_A          185 Q----------LD-RDGGLFLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKP  231 (385)
T ss_dssp             T----------SC-HHHHHHHHHHHHTTTCEEECSCCGGGC-------------HHHHHHSEEEECCCEEE
T ss_pred             h----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEc-------------CeEEecCeEEECcCccc
Confidence            0          00 123344556666788888888877665             55688999999999764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=94.24  E-value=0.18  Score=54.27  Aligned_cols=87  Identities=17%  Similarity=0.098  Sum_probs=61.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.++++.+....                                            
T Consensus       357 ~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~--------------------------------------------  392 (521)
T 1hyu_A          357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--------------------------------------------  392 (521)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS--------------------------------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc--------------------------------------------
Confidence            69999976 699999999999999999987642110                                            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHh-cCCEEEeCceEEEEEEeCCeE-EEEEc---CCc--EEEcCEEEEecCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGN  259 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~-~G~~v~~~t~v~~i~~~~dgv-~V~~~---~g~--~i~ArlVV~ADG~  259 (546)
                                  +     ..+.+++.+ .|++++.+++++++..+++.+ .|.+.   +|+  ++.++.||-|.|.
T Consensus       393 ------------~-----~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  451 (521)
T 1hyu_A          393 ------------D-----QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGL  451 (521)
T ss_dssp             ------------C-----HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             ------------C-----HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence                        0     112334444 488999999999987665544 34443   243  6889999988773

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.10  E-value=0.094  Score=57.10  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=28.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      .|+||||| .|.-+|..|++.|.+|.|++|.+.
T Consensus       193 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          193 RVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             EEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            59999976 599999999999999999999874

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=93.93  E-value=0.11  Score=55.19  Aligned_cols=130  Identities=21%  Similarity=0.151  Sum_probs=69.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhC--------------------CC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCc
Q 009027          111 FDVIVCGGT-LGIFIATALSFK--------------------GL-RVAIVERNTLKGREQEWNISRKELLELVESGILVE  168 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~--------------------G~-rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~  168 (546)
                      -.|+||||| .|+-+|..|++.                    |. +|.|++|......    ..+..++..|..+.   .
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~----~f~~~elrel~~lp---~  220 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQA----AFTTLELRELADLD---G  220 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGC----CCCHHHHHHGGGCT---T
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhh----ccChHHHHHhhcCC---C
Confidence            369999975 699999999874                    65 9999998763221    24455544332221   0


Q ss_pred             ccchhhhhhccCCCcccccCCccccccccccceeC--HHHHHHHHHHHHHh------cCCEEEeCceEEEEEEeCC--eE
Q 009027          169 DDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVS--PAKLIEIVKKRFIS------LGGVIFEGYSVSSICTYEN--AA  238 (546)
Q Consensus       169 ~~ie~~i~~~~~~~~v~f~~~~~l~~~~~l~~~V~--~~~L~~~L~~~a~~------~G~~v~~~t~v~~i~~~~d--gv  238 (546)
                      .++      .+.+..+. .......      ...+  ..++.+.|.+.+.+      .|+++++++++.++..++.  ++
T Consensus       221 ~~~------~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v  287 (456)
T 1lqt_A          221 VDV------VIDPAELD-GITDEDA------AAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERI  287 (456)
T ss_dssp             EEE------ECCGGGGT-TCCHHHH------HHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEE
T ss_pred             cee------eeChHHhc-cchhhhh------hhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEE
Confidence            000      00000000 0000000      0011  12334566666655      6889999999998864422  23


Q ss_pred             EEEE--------------cCC--cEEEcCEEEEecCCC
Q 009027          239 VLLL--------------AEG--KILSSHLIIDAMGNF  260 (546)
Q Consensus       239 ~V~~--------------~~g--~~i~ArlVV~ADG~~  260 (546)
                      ++..              .+|  +++.|++||-|-|..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~  325 (456)
T 1lqt_A          288 VLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYR  325 (456)
T ss_dssp             EEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEE
T ss_pred             EEEEEEecCCCcccccccCCCceEEEEcCEEEEccccc
Confidence            3331              123  357888888777754

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=93.58  E-value=0.034  Score=62.46  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=29.5

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCC--------CeEEEEcCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKG--------LRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G--------~rVlLlEr~~  142 (546)
                      ..+|+||||| +|+++|..|+++|        ++|+|+|+..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence            4799999976 5999999999999        9999999886

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=93.38  E-value=0.32  Score=54.15  Aligned_cols=50  Identities=18%  Similarity=0.282  Sum_probs=39.6

Q ss_pred             HHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEcCEEEEecCCCh
Q 009027          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS  261 (546)
Q Consensus       209 ~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g--~~i~ArlVV~ADG~~S  261 (546)
                      ..+.+.+++.|++++.+++++++.  +++++++ .+|  +++.++.||-|.|...
T Consensus       577 ~~~~~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          577 WIHRTTLLSRGVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             HHHHHHHHHTTCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCEEE
T ss_pred             HHHHHHHHhcCCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCccc
Confidence            455667778899999999999875  5676665 566  5799999999999764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=93.19  E-value=0.3  Score=50.42  Aligned_cols=50  Identities=14%  Similarity=0.196  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                      +.+.+.+.+++.|++++.++++++++  +++  |.+++|+++.+|+||-|.|..
T Consensus       220 ~~~~~~~~l~~~gV~~~~~~~v~~i~--~~~--v~~~~g~~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          220 SRKAVASIYNQLGIKLVHNFKIKEIR--EHE--IVDEKGNTIPADITILLPPYT  269 (409)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEC--SSE--EEETTSCEEECSEEEEECCEE
T ss_pred             HHHHHHHHHHHCCCEEEcCCceEEEC--CCe--EEECCCCEEeeeEEEECCCCC
Confidence            34555666677899999999998874  344  566788899999999998854

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=92.62  E-value=0.62  Score=54.50  Aligned_cols=31  Identities=35%  Similarity=0.262  Sum_probs=27.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      .|+||||| .|+=+|..+++.|. +|.|+++..
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            79999977 69999999999997 899999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=92.51  E-value=0.44  Score=53.64  Aligned_cols=93  Identities=17%  Similarity=0.135  Sum_probs=63.5

Q ss_pred             cEEEEc--ch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          112 DVIVCG--GT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       112 DVIIVG--Gg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      .|+|||  || .|+-+|..|++.|.+|.|+++.+ ....            .                 .       +  
T Consensus       530 ~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~------------~-----------------~-------~--  570 (729)
T 1o94_A          530 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANY------------M-----------------H-------F--  570 (729)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHH------------H-----------------H-------H--
T ss_pred             eEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccc------------c-----------------c-------c--
Confidence            699997  55 69999999999999999999875 2100            0                 0       0  


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE--cCC-cE------------------
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEG-KI------------------  247 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~~g-~~------------------  247 (546)
                      ..            +.    ..+.+.+.+.|++++.+++++++.  +++++++.  .++ ++                  
T Consensus       571 ~~------------~~----~~~~~~l~~~GV~i~~~~~v~~i~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  632 (729)
T 1o94_A          571 TL------------EY----PNMMRRLHELHVEELGDHFCSRIE--PGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRW  632 (729)
T ss_dssp             TT------------CH----HHHHHHHHHTTCEEECSEEEEEEE--TTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEE
T ss_pred             cc------------cH----HHHHHHHHhCCCEEEcCcEEEEEE--CCeEEEEEecCCceEEecccccccccccCCccee
Confidence            00            01    223445567899999999999875  45666653  232 22                  


Q ss_pred             EEcCEEEEecCCCh
Q 009027          248 LSSHLIIDAMGNFS  261 (546)
Q Consensus       248 i~ArlVV~ADG~~S  261 (546)
                      +.|+.||-|.|..+
T Consensus       633 i~aD~Vv~a~G~~p  646 (729)
T 1o94_A          633 IEFDSLVLVTGRHS  646 (729)
T ss_dssp             EECSEEEEESCEEE
T ss_pred             eeCCEEEECCCCCC
Confidence            88999999988654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.29  E-value=0.15  Score=44.53  Aligned_cols=32  Identities=16%  Similarity=0.421  Sum_probs=28.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -.|+|+| |..|..+|..|.+.|++|+++|+.+
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3599999 5589999999999999999999875

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.10  E-value=0.14  Score=45.59  Aligned_cols=32  Identities=31%  Similarity=0.472  Sum_probs=28.4

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -.|+|+|+ ..|..+|..|.+.|++|.++|+.+
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            36999994 579999999999999999999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=92.00  E-value=0.16  Score=53.35  Aligned_cols=31  Identities=16%  Similarity=0.090  Sum_probs=27.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~r-VlLlEr~~  142 (546)
                      .|+||||| .|+=+|..|++.|.+ |.|++|..
T Consensus       214 ~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          214 SVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             CEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             EEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            69999976 699999999999999 99999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=91.82  E-value=0.3  Score=56.84  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=66.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+...        .                                    
T Consensus       286 ~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~--------~------------------------------------  321 (965)
T 2gag_A          286 RIAVATTNDSAYELVRELAATGGVVAVIDARSSIS--------A------------------------------------  321 (965)
T ss_dssp             SEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC--------H------------------------------------
T ss_pred             eEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc--------h------------------------------------
Confidence            59999965 69999999999999999999764210        0                                    


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe-CCeE-EEEEcC-------C--cEEEcCEEEEecCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAE-------G--KILSSHLIIDAMGN  259 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~-~dgv-~V~~~~-------g--~~i~ArlVV~ADG~  259 (546)
                                    .      .+++++.|++++.+++++++..+ ++.+ .|.+.+       |  +++.++.||-|.|.
T Consensus       322 --------------~------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~  381 (965)
T 2gag_A          322 --------------A------AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGF  381 (965)
T ss_dssp             --------------H------HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE
T ss_pred             --------------h------HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCc
Confidence                          0      13345679999999999998763 3432 344432       4  58999999999996


Q ss_pred             Ch--HHHHHhc
Q 009027          260 FS--PVVKQIR  268 (546)
Q Consensus       260 ~S--~vr~ql~  268 (546)
                      ..  .+.++.+
T Consensus       382 ~P~~~l~~~~~  392 (965)
T 2gag_A          382 NPVVHLHSQRQ  392 (965)
T ss_dssp             EECCHHHHHTT
T ss_pred             CcChHHHHhCC
Confidence            43  3455543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.55  E-value=0.15  Score=44.35  Aligned_cols=31  Identities=26%  Similarity=0.460  Sum_probs=27.7

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+|+|+ ..|..+|..|+++|++|.++|+.+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            5999995 589999999999999999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.10  E-value=0.19  Score=43.16  Aligned_cols=32  Identities=25%  Similarity=0.469  Sum_probs=28.0

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ..|+|+|+ ..|..+|..|++.|++|.++|+.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            46999995 579999999999999999999753

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=90.74  E-value=0.54  Score=49.78  Aligned_cols=31  Identities=19%  Similarity=0.119  Sum_probs=27.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+||||| .|+=+|..|++.|.+|.++++.+
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~  230 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT  230 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred             EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence            59999976 69999999999999999999765

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=90.38  E-value=0.26  Score=51.65  Aligned_cols=36  Identities=31%  Similarity=0.498  Sum_probs=31.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +|||+||||| .|+++|+.|+++|++|+|+|++..++
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG   42 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            6999999976 58899999999999999999987554

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=90.30  E-value=0.37  Score=51.45  Aligned_cols=37  Identities=27%  Similarity=0.492  Sum_probs=32.7

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+|||||||+| .|+++|+.|+++|++|+|+||+...+
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~G   56 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYG   56 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            46999999976 58899999999999999999997654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=89.95  E-value=1.6  Score=45.52  Aligned_cols=55  Identities=13%  Similarity=0.110  Sum_probs=39.3

Q ss_pred             HHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE--cC-----CcEEEcCEEEEecCC--ChHHHH
Q 009027          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AE-----GKILSSHLIIDAMGN--FSPVVK  265 (546)
Q Consensus       209 ~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~--~~-----g~~i~ArlVV~ADG~--~S~vr~  265 (546)
                      +.+.+.+++.|++++.++++++++  +++++++.  .+     ++++.+++||-|.|.  ..++..
T Consensus       212 ~~~~~~l~~~gI~~~~~~~v~~v~--~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~  275 (437)
T 3sx6_A          212 GILTKGLKEEGIEAYTNCKVTKVE--DNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAG  275 (437)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEE--TTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHT
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEE--CCeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhc
Confidence            445566677899999999998874  56666653  22     457999999999873  345553

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.51  E-value=0.26  Score=40.77  Aligned_cols=32  Identities=25%  Similarity=0.553  Sum_probs=28.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCC-CeEEEEcCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKG-LRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G-~rVlLlEr~~  142 (546)
                      -.|+|+| |++|..+|..|.+.| ++|.+++|.+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            4699999 468999999999999 9999999864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=89.48  E-value=0.36  Score=50.94  Aligned_cols=35  Identities=34%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~~~  144 (546)
                      .+||+||||| +|+++|..|+++|+ +|+|+|+...+
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~   40 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   40 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence            6899999976 59999999999999 89999997654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=89.37  E-value=0.24  Score=49.32  Aligned_cols=31  Identities=19%  Similarity=0.302  Sum_probs=26.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -.|+||||| .|+-+|..|++.| +|.++.+..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            369999976 6999999999998 799999774

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=88.98  E-value=0.32  Score=41.72  Aligned_cols=31  Identities=32%  Similarity=0.368  Sum_probs=27.5

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+|+| |..|..+|..|++.|++|.++|+.+
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            499999 5689999999999999999999763

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=88.96  E-value=0.3  Score=47.44  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      ..|+|+| ||+|..+|..|++.|. ++.|+|+...
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            4699999 7899999999999998 8999998753

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=88.95  E-value=0.4  Score=42.33  Aligned_cols=31  Identities=29%  Similarity=0.480  Sum_probs=27.6

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+|+|+ ..|...|..|.+.|++|+++|+.+
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            5899995 579999999999999999999863

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=88.73  E-value=0.64  Score=48.96  Aligned_cols=37  Identities=27%  Similarity=0.430  Sum_probs=32.9

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+||||||||| .|+++|+.|+++|++|+|+|++..++
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~G   47 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   47 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            36999999976 58899999999999999999998765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.36  E-value=0.29  Score=44.60  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=27.8

Q ss_pred             cEEEEc-chHHHHHHHHHHhC-CCeEEEEcCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFK-GLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~-G~rVlLlEr~~  142 (546)
                      .|+|+| |.+|..+|..|.+. |++|.++|+.+
T Consensus        41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           41 QVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            599999 56899999999999 99999999864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=87.90  E-value=0.39  Score=45.12  Aligned_cols=31  Identities=23%  Similarity=0.510  Sum_probs=27.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+|+|+| .|..+|..|.++|++|+++|+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            38999965 79999999999999999999764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=87.28  E-value=0.44  Score=48.15  Aligned_cols=31  Identities=26%  Similarity=0.435  Sum_probs=27.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|||+| +|.-.|..+|++|++|.|+|..+
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999965 79999999999999999999765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=87.10  E-value=0.55  Score=46.60  Aligned_cols=31  Identities=32%  Similarity=0.472  Sum_probs=27.8

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|.|||+ .+|..+|..|+++|++|.++|+.+
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            5999995 579999999999999999999875

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=86.82  E-value=0.93  Score=45.62  Aligned_cols=44  Identities=18%  Similarity=0.167  Sum_probs=33.6

Q ss_pred             cEEEEc-chHHHH-HHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCC
Q 009027          112 DVIVCG-GTLGIF-IATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGI  165 (546)
Q Consensus       112 DVIIVG-Gg~G~~-~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl  165 (546)
                      -|.|+| ||.|++ +|..|+++|++|.+.|+...+.          ..+.|++.|+
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~----------~~~~L~~~gi   51 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPP----------MSTQLEALGI   51 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTT----------HHHHHHHTTC
T ss_pred             EEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcH----------HHHHHHhCCC
Confidence            589999 789997 6778889999999999875422          2345666675

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=86.82  E-value=0.59  Score=46.85  Aligned_cols=31  Identities=29%  Similarity=0.554  Sum_probs=27.7

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|+|+ ..|++.|..|+++|++|.+++|.+
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            5899995 579999999999999999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=86.77  E-value=0.45  Score=46.90  Aligned_cols=32  Identities=28%  Similarity=0.258  Sum_probs=28.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+|+.+.
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            59999976 699999999999999999998753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=86.53  E-value=0.53  Score=46.36  Aligned_cols=31  Identities=39%  Similarity=0.503  Sum_probs=27.7

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|.|||+ .+|..+|..|+++|++|.++|+.+
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4899995 579999999999999999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=86.39  E-value=0.54  Score=46.08  Aligned_cols=33  Identities=27%  Similarity=0.294  Sum_probs=28.8

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      -.|+||||| .|+-+|..|++.|.+|.|+||...
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            369999976 699999999999999999998654

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=85.33  E-value=0.76  Score=44.58  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|-||  |+|..+|..|++.|.+|++.++..
T Consensus         5 vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~   36 (247)
T 3ged_A            5 VIVTGGGHGIGKQICLDFLEAGDKVCFIDIDE   36 (247)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEecCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788885  799999999999999999999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=85.30  E-value=0.8  Score=44.56  Aligned_cols=30  Identities=33%  Similarity=0.285  Sum_probs=27.2

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |.|+|+ .+|...|..|+++|++|.+++|.+
T Consensus         3 i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            889995 479999999999999999999875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=85.23  E-value=0.67  Score=46.26  Aligned_cols=31  Identities=23%  Similarity=0.442  Sum_probs=27.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|+|+| .|++.|..|+++|++|.+++|.+
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            58999955 69999999999999999999864

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=84.92  E-value=0.78  Score=44.10  Aligned_cols=30  Identities=33%  Similarity=0.402  Sum_probs=27.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|++++|..
T Consensus        10 vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (252)
T 3h7a_A           10 VAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG   41 (252)
T ss_dssp             EEEECCSSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            888894  789999999999999999999865

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=84.71  E-value=0.63  Score=49.42  Aligned_cols=54  Identities=19%  Similarity=0.170  Sum_probs=38.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCc
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVE  168 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~  168 (546)
                      --|.|||+| +|..+|..|+++|++|.++|+.+.    +..+.....++.+.+.|.++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e----~a~~~i~~~l~~~~~~G~l~~  109 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ----RCKQELEVMYAREKSFKRLND  109 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHHHHHHHHTTSCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH----HHHHHHHHHHHHHHHcCCCCH
Confidence            359999965 699999999999999999998864    111111234555666776654

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=84.69  E-value=0.48  Score=47.67  Aligned_cols=31  Identities=29%  Similarity=0.416  Sum_probs=24.8

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++|.| ||+|=+     +|++||+.|.||+|||-.+.
T Consensus        51 IAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq   87 (314)
T 3fwy_A           51 FAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK   87 (314)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred             EEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            56668 887654     67788999999999997753

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=84.63  E-value=0.85  Score=42.94  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=27.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus         4 vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   35 (230)
T 3guy_A            4 IVITGASSGLGAELAKLYDAEGKATYLTGRSE   35 (230)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEecCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788894  789999999999999999999864

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=84.48  E-value=0.89  Score=43.21  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus         6 vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~   37 (235)
T 3l6e_A            6 IIVTGAGSGLGRALTIGLVERGHQVSMMGRRY   37 (235)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788894  789999999999999999999864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=84.39  E-value=2.1  Score=41.55  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=28.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      -|+|.||  |+|..+|..|+++|.+|+++++....
T Consensus        12 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~   46 (287)
T 3pxx_A           12 VVLVTGGARGQGRSHAVKLAEEGADIILFDICHDI   46 (287)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCC
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccc
Confidence            3888895  78999999999999999999987543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=84.28  E-value=0.86  Score=44.20  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      ..|+|+| ||+|+.+|..|++.|+ ++.|+|....
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV   63 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            4699999 7899999999999998 7789987653

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=83.78  E-value=1  Score=43.62  Aligned_cols=31  Identities=29%  Similarity=0.392  Sum_probs=27.5

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++|-||  |+|..+|..|++.|.+|++.+|...
T Consensus        14 alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~   46 (242)
T 4b79_A           14 VLVTGGSSGIGAAIAMQFAELGAEVVALGLDAD   46 (242)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            677785  7999999999999999999998764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=83.77  E-value=0.85  Score=44.87  Aligned_cols=31  Identities=16%  Similarity=0.354  Sum_probs=27.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|+|+| +|..+|..|+++|++|.+++|.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            58999954 79999999999999999999764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=83.76  E-value=2.2  Score=41.96  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=27.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++|.||  |+|..+|..|+++|.+|+++++.+.
T Consensus        31 ~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~   63 (299)
T 3t7c_A           31 AFITGAARGQGRSHAITLAREGADIIAIDVCKQ   63 (299)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEecccc
Confidence            888894  7899999999999999999998754

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=83.76  E-value=1.5  Score=42.57  Aligned_cols=30  Identities=27%  Similarity=0.455  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        30 ~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4fc7_A           30 AFITGGGSGIGFRIAEIFMRHGCHTVIASRSL   61 (277)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            888894  789999999999999999999874

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=83.74  E-value=1  Score=43.28  Aligned_cols=31  Identities=26%  Similarity=0.333  Sum_probs=27.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++|.||  |+|..+|..|+++|.+|++++|...
T Consensus        10 ~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   42 (257)
T 3tpc_A           10 FIVTGASSGLGAAVTRMLAQEGATVLGLDLKPP   42 (257)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            788894  7899999999999999999998764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=83.68  E-value=1.1  Score=41.95  Aligned_cols=32  Identities=16%  Similarity=0.340  Sum_probs=28.3

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ..|.|+|.| +|.++|..|+++|++|.+++|.+
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            469999955 79999999999999999999875

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=83.62  E-value=1  Score=43.15  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=28.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      -|+|.||  |+|..+|..|+++|++|++++|....
T Consensus        24 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           24 NILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP   58 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            3888894  68999999999999999999988754

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=83.53  E-value=1  Score=43.19  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=27.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      =|+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        14 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   46 (252)
T 3f1l_A           14 IILVTGASDGIGREAAMTYARYGATVILLGRNE   46 (252)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3788884  789999999999999999999864

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=83.37  E-value=0.94  Score=45.64  Aligned_cols=30  Identities=17%  Similarity=0.529  Sum_probs=26.9

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      .|.|+|+ ..|++.|..|+++|++|.+++|.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            5899995 57999999999999999999974

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=83.29  E-value=1  Score=43.79  Aligned_cols=30  Identities=37%  Similarity=0.490  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|++++|..
T Consensus        33 vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           33 AIVSGGAGGLGEATVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            888895  789999999999999999999864

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=83.08  E-value=1.1  Score=43.54  Aligned_cols=31  Identities=23%  Similarity=0.405  Sum_probs=27.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|...
T Consensus        14 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   46 (271)
T 3tzq_B           14 AIITGACGGIGLETSRVLARAGARVVLADLPET   46 (271)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            788894  7899999999999999999998753

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=82.78  E-value=0.97  Score=45.03  Aligned_cols=33  Identities=24%  Similarity=0.529  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      .-|+||| ||+|+.+|..||+.|+ ++.|+|....
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            5699999 7899999999999997 7889997754

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=82.76  E-value=1.1  Score=42.49  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=28.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      -|+|.||  |+|..+|..|+++|++|.+++|...
T Consensus         9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            9 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            3888894  7899999999999999999998764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=82.74  E-value=0.99  Score=48.14  Aligned_cols=33  Identities=15%  Similarity=0.374  Sum_probs=28.9

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ...|.|||. -+|+.+|..||++|++|.++|+.+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            357999995 579999999999999999999764

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=82.74  E-value=1.2  Score=42.61  Aligned_cols=31  Identities=29%  Similarity=0.443  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|.+|++++|..
T Consensus         8 ~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   40 (247)
T 3rwb_A            8 TALVTGAAQGIGKAIAARLAADGATVIVSDINA   40 (247)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3888894  789999999999999999999864

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=82.68  E-value=0.98  Score=43.91  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=27.8

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      -|+|.||  |+|..+|..|+++|.+|++++|....
T Consensus        16 ~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   50 (269)
T 3vtz_A           16 VAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKS   50 (269)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            4888894  78999999999999999999987643

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=82.64  E-value=0.98  Score=44.10  Aligned_cols=31  Identities=16%  Similarity=0.194  Sum_probs=27.3

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++|-||  |+|.++|..|++.|.+|++.+|...
T Consensus        14 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (261)
T 4h15_A           14 ALITAGTKGAGAATVSLFLELGAQVLTTARARP   46 (261)
T ss_dssp             EEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEeccCcHHHHHHHHHHHHcCCEEEEEECCch
Confidence            677784  7999999999999999999998754

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=82.55  E-value=1.2  Score=42.76  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        11 ~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   43 (261)
T 3n74_A           11 VALITGAGSGFGEGMAKRFAKGGAKVVIVDRDK   43 (261)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3888894  689999999999999999999874

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=82.45  E-value=1.2  Score=42.90  Aligned_cols=30  Identities=33%  Similarity=0.484  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        11 ~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   42 (255)
T 4eso_A           11 AIVIGGTHGMGLATVRRLVEGGAEVLLTGRNE   42 (255)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            888894  789999999999999999999864

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=82.43  E-value=1  Score=42.78  Aligned_cols=30  Identities=27%  Similarity=0.467  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|++++|..
T Consensus        17 vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~   48 (247)
T 3i1j_A           17 ILVTGAARGIGAAAARAYAAHGASVVLLGRTE   48 (247)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCChHHHHHHHHHHHCCCEEEEEecCH
Confidence            888894  789999999999999999999874

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=82.41  E-value=1.2  Score=43.28  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=28.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      -|+|.||  |+|..+|..|+++|.+|++++|....
T Consensus         8 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   42 (274)
T 3e03_A            8 TLFITGASRGIGLAIALRAARDGANVAIAAKSAVA   42 (274)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSC
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeccchh
Confidence            3888894  78999999999999999999988643

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=82.41  E-value=1.2  Score=41.86  Aligned_cols=30  Identities=30%  Similarity=0.473  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|++++|..
T Consensus         5 vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (235)
T 3l77_A            5 AVITGASRGIGEAIARALARDGYALALGARSV   36 (235)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788894  789999999999999999999864

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=82.40  E-value=1.2  Score=42.35  Aligned_cols=31  Identities=13%  Similarity=0.293  Sum_probs=27.5

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  |+|..+|..|+++|++|.+++|...
T Consensus         4 vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~   36 (257)
T 1fjh_A            4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            788894  7899999999999999999998753

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=82.39  E-value=0.98  Score=43.71  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=27.6

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        29 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   61 (260)
T 3gem_A           29 PILITGASQRVGLHCALRLLEHGHRVIISYRTE   61 (260)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3888894  789999999999999999999875

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=82.32  E-value=0.97  Score=43.39  Aligned_cols=30  Identities=33%  Similarity=0.653  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|+++|.+|++++|..
T Consensus        10 ~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (250)
T 3nyw_A           10 AIITGASQGIGAVIAAGLATDGYRVVLIARSK   41 (250)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788894  789999999999999999999864

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=82.32  E-value=0.75  Score=45.49  Aligned_cols=31  Identities=23%  Similarity=0.291  Sum_probs=27.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|+|+| .|++.|..|+++|++|.+++|.+
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            58999954 79999999999999999999874

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=82.24  E-value=1.2  Score=43.23  Aligned_cols=32  Identities=19%  Similarity=0.180  Sum_probs=28.0

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      =|+|.||  |+|..+|..|+++|++|+++++...
T Consensus        15 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   48 (278)
T 3sx2_A           15 VAFITGAARGQGRAHAVRLAADGADIIAVDLCDQ   48 (278)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCeEEEEecccc
Confidence            3888894  7899999999999999999998753

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.21  E-value=1.1  Score=42.39  Aligned_cols=32  Identities=31%  Similarity=0.407  Sum_probs=28.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      |+|.||  |+|..+|..|+++|++|++++|....
T Consensus         6 vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~   39 (236)
T 1ooe_A            6 VIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   39 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            788894  68999999999999999999987643

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=82.17  E-value=1.2  Score=43.81  Aligned_cols=30  Identities=27%  Similarity=0.470  Sum_probs=26.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|-||  |+|.++|..|++.|.+|++.+|..
T Consensus        32 alVTGas~GIG~aiA~~la~~Ga~V~i~~r~~   63 (273)
T 4fgs_A           32 AVITGATSGIGLAAAKRFVAEGARVFITGRRK   63 (273)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677785  799999999999999999999864

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=82.11  E-value=1.2  Score=43.44  Aligned_cols=31  Identities=23%  Similarity=0.211  Sum_probs=27.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  |+|..+|..|+++|.+|+++++...
T Consensus        14 ~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~   46 (286)
T 3uve_A           14 AFVTGAARGQGRSHAVRLAQEGADIIAVDICKP   46 (286)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             EEEeCCCchHHHHHHHHHHHCCCeEEEEecccc
Confidence            888894  7899999999999999999998753

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=81.98  E-value=1  Score=44.02  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=27.3

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|...
T Consensus        36 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   68 (275)
T 4imr_A           36 ALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPG   68 (275)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            778884  7899999999999999999998653

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=81.96  E-value=1.3  Score=41.92  Aligned_cols=30  Identities=50%  Similarity=0.719  Sum_probs=27.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|.+++|..
T Consensus         5 vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~   36 (239)
T 2ekp_A            5 ALVTGGSRGIGRAIAEALVARGYRVAIASRNP   36 (239)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788894  789999999999999999999875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=81.89  E-value=1.3  Score=43.30  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=27.7

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|+| ||+|.++|..|++.|.+|.+++|..
T Consensus       121 ~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          121 RILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            599999 6789999999999999999998763

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=81.86  E-value=1.2  Score=43.43  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        30 vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4dqx_A           30 CIVTGGGSGIGRATAELFAKNGAYVVVADVNE   61 (277)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788894  789999999999999999999764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=81.83  E-value=1.2  Score=43.43  Aligned_cols=31  Identities=26%  Similarity=0.452  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        34 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   66 (276)
T 3r1i_A           34 RALITGASTGIGKKVALAYAEAGAQVAVAARHS   66 (276)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3788894  789999999999999999999864

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=81.82  E-value=1  Score=43.72  Aligned_cols=30  Identities=23%  Similarity=0.454  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus         7 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   38 (264)
T 3tfo_A            7 ILITGASGGIGEGIARELGVAGAKILLGARRQ   38 (264)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEeCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788884  789999999999999999999874

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=81.82  E-value=1.3  Score=43.31  Aligned_cols=30  Identities=27%  Similarity=0.451  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        27 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   58 (279)
T 3sju_A           27 AFVTGVSSGIGLAVARTLAARGIAVYGCARDA   58 (279)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            888894  789999999999999999999864

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=81.82  E-value=1.3  Score=43.37  Aligned_cols=30  Identities=27%  Similarity=0.594  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus         8 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   39 (281)
T 3zv4_A            8 ALITGGASGLGRALVDRFVAEGARVAVLDKSA   39 (281)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            788884  799999999999999999999864

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=81.81  E-value=1.3  Score=42.23  Aligned_cols=30  Identities=27%  Similarity=0.510  Sum_probs=27.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|.+++|.+
T Consensus        10 vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A           10 AVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            888894  789999999999999999999875

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=81.71  E-value=1.3  Score=42.79  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        11 ~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   42 (265)
T 3lf2_A           11 AVVTGGSSGIGLATVELLLEAGAAVAFCARDG   42 (265)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788884  789999999999999999999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=81.65  E-value=1.4  Score=44.86  Aligned_cols=33  Identities=33%  Similarity=0.655  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      .-|+||| ||+|+.+|..|++.|+ ++.|+|....
T Consensus        35 ~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            4699999 7899999999999998 6778897754

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=81.53  E-value=1.4  Score=41.59  Aligned_cols=31  Identities=19%  Similarity=0.345  Sum_probs=27.5

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  ++|..+|..|+++|++|.+++|.+.
T Consensus         4 vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            4 IAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            788994  6899999999999999999998753

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=81.50  E-value=1.4  Score=42.07  Aligned_cols=31  Identities=32%  Similarity=0.379  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        11 ~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~   43 (253)
T 3qiv_A           11 VGIVTGSGGGIGQAYAEALAREGAAVVVADINA   43 (253)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3888894  789999999999999999999864

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=81.48  E-value=1.1  Score=43.19  Aligned_cols=30  Identities=40%  Similarity=0.602  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus         9 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (257)
T 3imf_A            9 VIITGGSSGMGKGMATRFAKEGARVVITGRTK   40 (257)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788884  789999999999999999999864

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=81.48  E-value=1.3  Score=43.06  Aligned_cols=32  Identities=31%  Similarity=0.443  Sum_probs=28.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|....
T Consensus        13 ~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~   46 (281)
T 3s55_A           13 ALITGGARGMGRSHAVALAEAGADIAICDRCENS   46 (281)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCC
T ss_pred             EEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence            888894  78999999999999999999987543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=81.47  E-value=1.1  Score=47.31  Aligned_cols=46  Identities=26%  Similarity=0.327  Sum_probs=35.1

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGI  165 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl  165 (546)
                      -|.|+| |+.|.++|..|+++|++|.+.|++....       + ...+.|++.|+
T Consensus        11 ~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~-------~-~~~~~L~~~gi   57 (451)
T 3lk7_A           11 KVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE-------N-PTAQSLLEEGI   57 (451)
T ss_dssp             EEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG-------C-HHHHHHHHTTC
T ss_pred             EEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC-------C-hHHHHHHhCCC
Confidence            599999 7789999999999999999999875310       1 23346777775

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=81.43  E-value=1.1  Score=43.63  Aligned_cols=31  Identities=35%  Similarity=0.523  Sum_probs=27.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|...
T Consensus        31 vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~   63 (266)
T 3uxy_A           31 ALVTGAAGGIGGAVVTALRAAGARVAVADRAVA   63 (266)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEECSSCCT
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            788884  7899999999999999999998754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=81.41  E-value=0.53  Score=49.99  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=28.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|||||+| .|..+|..|...|++|+|||+.+
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            49999965 79999999999999999999875

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=81.35  E-value=1.3  Score=43.09  Aligned_cols=30  Identities=17%  Similarity=0.238  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|+++|.+|++++|..
T Consensus        14 ~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~   45 (277)
T 3tsc_A           14 AFITGAARGQGRAHAVRMAAEGADIIAVDIAG   45 (277)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             EEEECCccHHHHHHHHHHHHcCCEEEEEeccc
Confidence            788894  789999999999999999999864

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=81.32  E-value=1.4  Score=43.42  Aligned_cols=31  Identities=26%  Similarity=0.509  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        49 ~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           49 NVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3888894  789999999999999999999874

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=81.31  E-value=1.1  Score=43.75  Aligned_cols=30  Identities=33%  Similarity=0.570  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|+++.|..
T Consensus        15 vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~   46 (311)
T 3o26_A           15 AVVTGGNKGIGFEICKQLSSNGIMVVLTCRDV   46 (311)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEecCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788894  799999999999999999999874

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=81.31  E-value=1.3  Score=43.33  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        31 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (283)
T 3v8b_A           31 ALITGAGSGIGRATALALAADGVTVGALGRTR   62 (283)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788884  789999999999999999999764

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=81.28  E-value=1.2  Score=44.47  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=27.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      --|.|||.| +|...|..|+ +|++|.++|+.+
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            469999954 7999999999 999999999764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=81.25  E-value=1.3  Score=42.66  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=27.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (264)
T 3ucx_A           13 VVVISGVGPALGTTLARRCAEQGADLVLAARTV   45 (264)
T ss_dssp             EEEEESCCTTHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            3888894  789999999999999999999864

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=81.13  E-value=1.4  Score=42.95  Aligned_cols=30  Identities=40%  Similarity=0.543  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        14 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (281)
T 3svt_A           14 YLVTGGGSGIGKGVAAGLVAAGASVMIVGRNP   45 (281)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            888894  789999999999999999999864

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=81.10  E-value=1.4  Score=42.08  Aligned_cols=31  Identities=35%  Similarity=0.489  Sum_probs=27.4

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|++|.+++|..
T Consensus        21 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           21 GVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3888894  789999999999999999999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=81.10  E-value=1  Score=47.37  Aligned_cols=33  Identities=15%  Similarity=0.362  Sum_probs=28.3

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      -|.|+| |+.|+++|..|+++|++|.+.|....+
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             EEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            489999 678999998999999999999976543

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=81.08  E-value=1.2  Score=42.68  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=26.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        12 ~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   43 (248)
T 3op4_A           12 ALVTGASRGIGKAIAELLAERGAKVIGTATSE   43 (248)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788884  789999999999999999999764

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=81.06  E-value=1.4  Score=42.80  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=27.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        18 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   50 (266)
T 3p19_A           18 LVVITGASSGIGEAIARRFSEEGHPLLLLARRV   50 (266)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3788884  789999999999999999999863

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=81.00  E-value=1.5  Score=41.93  Aligned_cols=31  Identities=32%  Similarity=0.439  Sum_probs=27.2

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -++|.||  |+|..+|..|+++|++|++++|..
T Consensus         9 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   41 (247)
T 2jah_A            9 VALITGASSGIGEATARALAAEGAAVAIAARRV   41 (247)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3888894  789999999999999999999763

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=81.00  E-value=1.4  Score=41.89  Aligned_cols=30  Identities=40%  Similarity=0.608  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  ++|..+|..|+++|++|.+++|..
T Consensus        16 vlItGasggiG~~la~~l~~~G~~V~~~~r~~   47 (260)
T 3awd_A           16 AIVTGGAQNIGLACVTALAEAGARVIIADLDE   47 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            888894  689999999999999999999764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=80.98  E-value=1.4  Score=42.80  Aligned_cols=30  Identities=33%  Similarity=0.368  Sum_probs=26.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|-||  |+|..+|..||+.|.+|++.+|..
T Consensus        10 alVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~   41 (254)
T 4fn4_A           10 VIVTGAGSGIGRAIAKKFALNDSIVVAVELLE   41 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            677785  799999999999999999999864

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=80.98  E-value=1.4  Score=41.70  Aligned_cols=30  Identities=27%  Similarity=0.556  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  ++|..+|..|+++|++|.+++|..
T Consensus        14 vlITGasggiG~~la~~l~~~G~~V~~~~r~~   45 (254)
T 2wsb_A           14 AAVTGAGSGIGLEICRAFAASGARLILIDREA   45 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            888894  689999999999999999999864

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=80.92  E-value=1.4  Score=42.23  Aligned_cols=30  Identities=27%  Similarity=0.399  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|++++|..
T Consensus        11 vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   42 (259)
T 4e6p_A           11 ALITGSARGIGRAFAEAYVREGATVAIADIDI   42 (259)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            888894  789999999999999999999764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=80.81  E-value=1.4  Score=43.72  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=28.0

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCC--eEEEEcCCC
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGL--RVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~--rVlLlEr~~  142 (546)
                      .-|+|+|+ .+|..+|..|++.|+  +|.++|+..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            36999995 479999999999999  999999864

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=80.72  E-value=1.4  Score=43.05  Aligned_cols=33  Identities=27%  Similarity=0.539  Sum_probs=28.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      -|+|.||  |+|..+|..|+++|++|++++|....
T Consensus        11 ~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   45 (285)
T 3sc4_A           11 TMFISGGSRGIGLAIAKRVAADGANVALVAKSAEP   45 (285)
T ss_dssp             EEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            3788894  78999999999999999999988653

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=80.72  E-value=1.5  Score=42.36  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=28.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      |+|.||  |+|..+|..|+++|++|++++|....
T Consensus        11 vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   44 (264)
T 2dtx_A           11 VIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG   44 (264)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            888894  78999999999999999999987643

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=80.68  E-value=1.4  Score=42.90  Aligned_cols=31  Identities=16%  Similarity=0.179  Sum_probs=27.5

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|...
T Consensus        18 ~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~   50 (280)
T 3pgx_A           18 AFITGAARGQGRSHAVRLAAEGADIIACDICAP   50 (280)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEecccc
Confidence            888894  7899999999999999999998643

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=80.66  E-value=1.2  Score=41.71  Aligned_cols=31  Identities=35%  Similarity=0.522  Sum_probs=27.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  ++|..+|..|+++|++|.+++|...
T Consensus         5 vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~   37 (242)
T 1uay_A            5 ALVTGGASGLGRAAALALKARGYRVVVLDLRRE   37 (242)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc
Confidence            788994  6899999999999999999998764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=80.65  E-value=1.5  Score=42.70  Aligned_cols=30  Identities=27%  Similarity=0.336  Sum_probs=26.5

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      -|+|.||  |+|..+|..|+++|.+|++++|.
T Consensus        33 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   64 (273)
T 3uf0_A           33 TAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT   64 (273)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH
Confidence            3888894  78999999999999999999954

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=80.65  E-value=1.2  Score=42.77  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (262)
T 3rkr_A           31 VAVVTGASRGIGAAIARKLGSLGARVVLTARDV   63 (262)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            3888894  789999999999999999999864

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=80.62  E-value=1.6  Score=41.71  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=28.0

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      -|+|.||  |+|..+|..|+++|++|++++|...
T Consensus         9 ~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   42 (250)
T 2fwm_X            9 NVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT   42 (250)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchh
Confidence            3788894  7899999999999999999998754

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=80.58  E-value=1.5  Score=41.42  Aligned_cols=30  Identities=37%  Similarity=0.465  Sum_probs=26.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  ++|..+|..|+++|++|++++|..
T Consensus         5 vlItGasggiG~~~a~~l~~~G~~V~~~~r~~   36 (250)
T 2cfc_A            5 AIVTGASSGNGLAIATRFLARGDRVAALDLSA   36 (250)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788894  689999999999999999999764

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=80.53  E-value=1.6  Score=41.92  Aligned_cols=31  Identities=35%  Similarity=0.492  Sum_probs=27.5

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  |+|..+|..|+++|++|.+++|...
T Consensus         9 vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (256)
T 2d1y_A            9 VLVTGGARGIGRAIAQAFAREGALVALCDLRPE   41 (256)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            788894  7899999999999999999998753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=80.51  E-value=1.9  Score=45.86  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=28.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      -.|+||||| .|+-+|..|++.|.+|.++|+.+.
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  216 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDH  216 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            369999976 699999999999999999998864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=80.49  E-value=1.5  Score=41.18  Aligned_cols=31  Identities=26%  Similarity=0.426  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  ++|..+|..|+++|++|.++.|.+
T Consensus        23 ~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           23 RVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             eEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            4899994  589999999999999999999875

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=80.47  E-value=1.1  Score=47.03  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |.|||. -+|+.+|..|+++|++|.++|+.+
T Consensus         3 I~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            789995 579999999999999999999764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=80.47  E-value=1.2  Score=42.98  Aligned_cols=30  Identities=43%  Similarity=0.598  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|++++|..
T Consensus        13 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   44 (262)
T 3pk0_A           13 VVVTGGTKGIGRGIATVFARAGANVAVAGRST   44 (262)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788884  789999999999999999999874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=80.47  E-value=1.6  Score=46.05  Aligned_cols=34  Identities=18%  Similarity=0.324  Sum_probs=30.0

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ...+.|||.| .|+.+|..||++|++|+++|+.+.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4679999955 799999999999999999998864

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=80.42  E-value=1.4  Score=42.60  Aligned_cols=30  Identities=17%  Similarity=0.346  Sum_probs=26.7

Q ss_pred             EEEEc--c--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCG--G--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVG--G--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|-|  |  |+|..+|..||+.|.+|++.+|..
T Consensus         9 alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~   42 (256)
T 4fs3_A            9 YVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE   42 (256)
T ss_dssp             EEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            77778  4  799999999999999999999874

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=80.41  E-value=1.5  Score=42.90  Aligned_cols=31  Identities=32%  Similarity=0.529  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        18 ~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~   50 (291)
T 3rd5_A           18 TVVITGANSGLGAVTARELARRGATVIMAVRDT   50 (291)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            3888884  789999999999999999999864

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=80.41  E-value=1.1  Score=44.16  Aligned_cols=30  Identities=40%  Similarity=0.577  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        44 vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   75 (293)
T 3rih_A           44 VLVTGGTKGIGRGIATVFARAGANVAVAARSP   75 (293)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            778884  789999999999999999999875

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=80.40  E-value=1.6  Score=41.72  Aligned_cols=31  Identities=23%  Similarity=0.395  Sum_probs=27.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  ++|..+|..|+++|++|++++|..
T Consensus        14 ~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   46 (265)
T 2o23_A           14 VAVITGGASGLGLATAERLVGQGASAVLLDLPN   46 (265)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3888994  689999999999999999999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=80.39  E-value=1.7  Score=39.98  Aligned_cols=30  Identities=23%  Similarity=0.309  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  ++|..++..|+++|++|.++.|.+
T Consensus         3 vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             EEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            889994  589999999999999999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=80.36  E-value=0.64  Score=40.57  Aligned_cols=31  Identities=29%  Similarity=0.523  Sum_probs=27.3

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+|+| |++|..+|..|++.|++|.+++|.+
T Consensus        23 ~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           23 KILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             EEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            599999 6689999999999999999999764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=80.36  E-value=1.5  Score=42.90  Aligned_cols=32  Identities=28%  Similarity=0.325  Sum_probs=28.2

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      .|.||| |-+|..+|..|+++|++|.+.||.+.
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            488999 55899999999999999999998753

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=80.35  E-value=1.2  Score=43.74  Aligned_cols=30  Identities=30%  Similarity=0.445  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        11 vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   42 (280)
T 3tox_A           11 AIVTGASSGIGRAAALLFAREGAKVVVTARNG   42 (280)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEECCSCH
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788884  789999999999999999999874

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=80.35  E-value=1.6  Score=42.44  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=27.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ++|-||  |+|.++|..|++.|.+|++++|...
T Consensus        10 alVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~   42 (258)
T 4gkb_A           10 VIVTGGASGIGGAISMRLAEERAIPVVFARHAP   42 (258)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcc
Confidence            677785  7999999999999999999998753

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=80.30  E-value=1.2  Score=42.20  Aligned_cols=31  Identities=29%  Similarity=0.373  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|++|++++|..
T Consensus        16 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   48 (249)
T 3f9i_A           16 TSLITGASSGIGSAIARLLHKLGSKVIISGSNE   48 (249)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4888894  689999999999999999999763

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=80.27  E-value=1.2  Score=47.25  Aligned_cols=31  Identities=32%  Similarity=0.327  Sum_probs=27.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|.|||+| +|..+|..|+++|++|.++|+.+
T Consensus        39 kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999955 79999999999999999999875

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=80.24  E-value=1.2  Score=43.65  Aligned_cols=30  Identities=27%  Similarity=0.420  Sum_probs=26.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        32 vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   63 (277)
T 3gvc_A           32 AIVTGAGAGIGLAVARRLADEGCHVLCADIDG   63 (277)
T ss_dssp             EEETTTTSTHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788884  789999999999999999999764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=80.21  E-value=1.2  Score=43.29  Aligned_cols=30  Identities=30%  Similarity=0.328  Sum_probs=26.5

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        31 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (270)
T 3ftp_A           31 AIVTGASRGIGRAIALELARRGAMVIGTATTE   62 (270)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            777784  789999999999999999999864

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=80.16  E-value=1.1  Score=43.53  Aligned_cols=30  Identities=30%  Similarity=0.445  Sum_probs=26.3

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|-||  |+|.++|..|++.|.+|++.+|+.
T Consensus        12 alVTGas~GIG~aia~~la~~Ga~Vvi~~~~~   43 (255)
T 4g81_D           12 ALVTGSARGLGFAYAEGLAAAGARVILNDIRA   43 (255)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEECCSCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            666684  799999999999999999999864

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=80.15  E-value=3  Score=41.50  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|+++++..
T Consensus        49 ~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~   80 (317)
T 3oec_A           49 AFITGAARGQGRTHAVRLAQDGADIVAIDLCR   80 (317)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCeEEEEeccc
Confidence            778884  799999999999999999999764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=80.11  E-value=2.9  Score=44.05  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=27.9

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      -.|+||||| .|+=+|..+.+.|. +|.+++|...
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            369999976 58889999999998 4999998764

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=80.11  E-value=1.5  Score=42.77  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=26.7

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      -|+|.||  |+|..+|..|+++|.+|++++|.
T Consensus        27 ~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~   58 (281)
T 3v2h_A           27 TAVITGSTSGIGLAIARTLAKAGANIVLNGFG   58 (281)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3788894  78999999999999999999985

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=80.11  E-value=1.6  Score=42.29  Aligned_cols=30  Identities=40%  Similarity=0.567  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|++++|..
T Consensus        24 ~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   55 (267)
T 1vl8_A           24 ALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   55 (267)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788894  789999999999999999999864

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=80.06  E-value=1.6  Score=41.02  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=27.3

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  ++|..+|..|+++|++|.+++|..
T Consensus         9 ~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 1cyd_A            9 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   41 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3889994  689999999999999999999864

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=80.04  E-value=1.6  Score=42.07  Aligned_cols=30  Identities=30%  Similarity=0.582  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|++|.+++|..
T Consensus        16 vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   47 (267)
T 1iy8_A           16 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   47 (267)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            888884  789999999999999999999864

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=80.03  E-value=1.3  Score=43.27  Aligned_cols=30  Identities=37%  Similarity=0.460  Sum_probs=26.5

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus        31 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (272)
T 4dyv_A           31 AIVTGAGSGVGRAVAVALAGAGYGVALAGRRL   62 (272)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677784  789999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	546
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	7e-04
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	9e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	0.001
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	0.001
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.002
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.003
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.003
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.003
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	0.004
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	0.004
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.004

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL----ELVE 162
           V ++D +V G G+ G+  A   +  G R A+VE + L G         K+++       E
Sbjct: 1   VASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSE 60

Query: 163 SGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKR 214
                 D    +   KFN      +    +   + +         IEI++  
Sbjct: 61  FMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH 112

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 14/153 (9%)

Query: 113 VIVCGGTLGIFIATALSFKGLRVAIVERNT--LKGREQEWNISRKELLELVESGILVEDD 170
            +V G   G+  A  L   G+ V + ER+   L G      +  + +  L+E G+ ++  
Sbjct: 8   AVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSI 67

Query: 171 IDEATATKFNPNRCGFE---GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYS 227
              +++ ++     G        +       ++     +L    +               
Sbjct: 68  SVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHT---------SKC 118

Query: 228 VSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260
           +  +        +  ++G    ++ +I A G  
Sbjct: 119 LVGLSQDSETVQMRFSDGTKAEANWVIGADGGA 151

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 100 QSDLSDKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
           Q+ L+     T DV+V G G  G   A + +  G +V ++E+  + G
Sbjct: 6   QAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG 52

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 23/181 (12%), Positives = 45/181 (24%), Gaps = 9/181 (4%)

Query: 113 VIVCGGTLGIFIATALSFKGLRVAIVERNTL-----KGREQEWNISRKELLELVESGILV 167
            I+  G  G+ +   L   G+   I+ER T      + R         +LL        +
Sbjct: 6   AIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRM 65

Query: 168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGY 226
             D       +            +              ++   + +   + G   +++  
Sbjct: 66  ARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAA 125

Query: 227 SVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSC 283
            V           +          L    I    G      + I + R   G   + G  
Sbjct: 126 EVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERMQHGRLFLAGDA 185

Query: 284 A 284
           A
Sbjct: 186 A 186

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
           +DVIV G G     ++  LS  G +V  +++    G
Sbjct: 6   YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 41

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG--------REQEWNISRKELLEL 160
           T DV++ G    G+  A +    G +V ++E+  + G                 +  L +
Sbjct: 23  TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGI 82

Query: 161 VESGILVEDDIDEATATKFNPNRCGF 186
            +   ++ DD  +      +P     
Sbjct: 83  EDKKQIMIDDTMKGGRNINDPELVKV 108

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 13/165 (7%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN---------TLKGREQEWNISRKELLE 159
             + I+ G G  G+F A  L+  G  V + +           +  G     N+       
Sbjct: 4   YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHY 63

Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
           L ++   V+  +   T   F                  L       +++E++K      G
Sbjct: 64  LSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYG 123

Query: 220 GVIFEGYSVSSICTYENAAVL---LLAEGKILSSHLIIDAMGNFS 261
             I     VS +   +N   +   L           +I A G  S
Sbjct: 124 AKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
           T  V+V G G+ G   + A    G  V +V++    G
Sbjct: 19  TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG 55

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
            +DVIV G G     ++  +S  G +V  ++RN   G
Sbjct: 6   EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG 42

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 14/165 (8%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN------TLKGREQEWNISRKELLELVES 163
           +DVIV G G  G+  A   + +G  V ++++                N++ +  L+ +  
Sbjct: 3   YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK 62

Query: 164 GILVEDDIDEATATKFNPN--RCGFEGKGEIWVED----ILNLGVSPAKLIEIVKKRFIS 217
            I        +  + FN       FE  G    E+    +  +      +++ +  R   
Sbjct: 63  HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKD 122

Query: 218 LGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFS 261
           LG  I     V +I         ++L  G++L ++ ++ A+G  S
Sbjct: 123 LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 167

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVE 162
           +D+IV G G+ G+  A   +    +VA+VE++ L G       + +K +     
Sbjct: 2   YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAAS 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	546
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.81
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.77
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.7
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.62
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.52
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.52
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.45
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.41
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.28
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.23
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.1
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.05
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.97
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.95
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.93
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.8
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.77
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.72
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.65
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.61
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.59
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.58
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.54
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.53
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.53
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.51
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.44
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.43
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.43
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.35
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.34
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.29
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.28
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.28
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.24
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.24
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.19
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.14
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.13
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.12
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.1
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.1
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.09
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.09
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.09
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.08
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.07
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.07
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.04
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.03
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.01
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.99
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.97
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.96
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.9
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.89
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.84
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.83
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.82
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.79
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.73
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.68
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.68
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.65
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.62
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.59
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.58
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.56
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.48
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.43
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.43
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.42
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.3
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.29
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.28
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.21
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.18
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.13
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.13
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.03
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.03
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.94
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.9
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.6
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.3
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.08
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.63
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	95.39
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.9
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.58
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.5
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.32
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.88
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	93.86
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.68
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.62
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.14
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.99
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	92.22
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.69
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.35
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	91.28
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.84
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	90.21
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.7
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	88.99
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.89
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	88.58
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.42
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	88.36
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	87.97
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.87
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	87.52
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	87.33
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	87.23
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	87.08
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.99
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	86.87
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	86.85
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	86.81
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	86.62
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.54
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.19
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	86.11
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.0
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.99
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.92
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	85.81
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	85.64
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.48
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	85.38
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.26
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.18
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.07
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.05
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	84.99
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.94
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	84.94
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	84.93
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.87
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	84.86
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	84.82
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	84.72
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	84.57
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	84.48
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	84.47
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	84.42
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.35
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	84.33
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	84.31
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	84.17
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	84.05
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	83.92
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	83.84
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	83.75
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	83.7
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	83.55
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.54
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	83.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	83.23
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	83.19
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	83.17
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	83.04
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	82.96
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	82.94
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	82.88
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	82.8
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.79
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	82.48
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	82.26
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	82.21
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	82.15
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	81.8
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	81.74
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	81.42
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	81.41
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	81.16
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	81.03
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	80.82
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	80.65
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	80.62
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	80.49
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.38
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.3

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.81  E-value=9.3e-21  Score=191.92  Aligned_cols=140  Identities=13%  Similarity=0.103  Sum_probs=89.0

Q ss_pred             CCcccEEEEcc-hHHHHHHHHHH-----hCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhccC
Q 009027          108 VGTFDVIVCGG-TLGIFIATALS-----FKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFN  180 (546)
Q Consensus       108 ~~~yDVIIVGG-g~G~~~Aa~LA-----~~G~rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~  180 (546)
                      +..|||+|||| ++|+++|..||     ++|++|+||||++.+.. .+...|++++++.|+++|++++.  .   .....
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i--~---~~~~~   79 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKI--L---SEAND   79 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHH--H---TTCBC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChHHH--H---hhcCC
Confidence            34799999996 57999999997     57999999999987764 45678999999999999997531  1   11111


Q ss_pred             CCccccc-----------CCcc--cc-ccccccceeCHHHHHHHHHHHHHhcC-CEEEeCceEEEEEEeCCeEEEEEcCC
Q 009027          181 PNRCGFE-----------GKGE--IW-VEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEG  245 (546)
Q Consensus       181 ~~~v~f~-----------~~~~--l~-~~~~l~~~V~~~~L~~~L~~~a~~~G-~~v~~~t~v~~i~~~~dgv~V~~~~g  245 (546)
                      .....+.           ....  .. ........+.+..+...|.+.+.+.+ ......+.+               .+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------~~  144 (360)
T d1pn0a1          80 MSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPL---------------IP  144 (360)
T ss_dssp             CCEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSE---------------EE
T ss_pred             cceeEEEecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEec---------------cc
Confidence            1111110           0000  00 00111245788888888888776542 221111111               12


Q ss_pred             cEEEcCEEEEecCCChHHHHHh
Q 009027          246 KILSSHLIIDAMGNFSPVVKQI  267 (546)
Q Consensus       246 ~~i~ArlVV~ADG~~S~vr~ql  267 (546)
                      ..+.++++++|||.+|+++...
T Consensus       145 ~~~~~d~~~~~dg~~s~v~~~~  166 (360)
T d1pn0a1         145 EKMEIDSSKAEDPEAYPVTMTL  166 (360)
T ss_dssp             EEEEECGGGTTCTTCCCEEEEE
T ss_pred             ceEEeeEEEEeecCCcceEEEE
Confidence            3577889999999999887543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=8.8e-18  Score=163.85  Aligned_cols=154  Identities=17%  Similarity=0.201  Sum_probs=103.7

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCCcccchhhhhhc-----cC-C
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATK-----FN-P  181 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~-rVlLlEr~~~~~~-~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~-----~~-~  181 (546)
                      .||+|||| ++|+++|+.|+++|+ +|+|+||++.++. .+...+++++++.|.++|+++.  ++......     +. .
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~   79 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA--LAATAIPTHELRYIDQS   79 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHH--HHHHSEEECEEEEECTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhh--hHhhhcccccceeEcCC
Confidence            69999996 579999999999996 9999999987764 3456789999999999998643  21110000     00 0


Q ss_pred             Cc-c-cccCCccccccccccceeCHHHHHHHHHHHHH--hcCCEEEeCceEEEEEEeCCeEEEEEcCC----cEEEcCEE
Q 009027          182 NR-C-GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFI--SLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLI  253 (546)
Q Consensus       182 ~~-v-~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~--~~G~~v~~~t~v~~i~~~~dgv~V~~~~g----~~i~ArlV  253 (546)
                      +. + .+.. .....................+.+.+.  ..++++..+++++.+...+++++|.+.++    ++++|++|
T Consensus        80 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~v  158 (288)
T d3c96a1          80 GATVWSEPR-GVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVL  158 (288)
T ss_dssp             SCEEEEEEC-GGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEE
T ss_pred             CCEEEeccc-cccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeecee
Confidence            00 0 0000 000000001122334444444444433  34779999999999999999999988764    38999999


Q ss_pred             EEecCCChHHHHHh
Q 009027          254 IDAMGNFSPVVKQI  267 (546)
Q Consensus       254 V~ADG~~S~vr~ql  267 (546)
                      |+|||.+|.+++..
T Consensus       159 i~ADG~~S~vr~~~  172 (288)
T d3c96a1         159 VGADGIHSAVRAHL  172 (288)
T ss_dssp             EECCCTTCHHHHHH
T ss_pred             eccCCccceeeeee
Confidence            99999999998765

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.70  E-value=3.4e-17  Score=169.75  Aligned_cols=256  Identities=17%  Similarity=0.191  Sum_probs=143.9

Q ss_pred             CCcccEEEEcc-hHHHHHHHHHHh------CCCeEEEEcCCCCCCCccc-c-cCCHHHHHHHHHcCCCCcccchhhhhhc
Q 009027          108 VGTFDVIVCGG-TLGIFIATALSF------KGLRVAIVERNTLKGREQE-W-NISRKELLELVESGILVEDDIDEATATK  178 (546)
Q Consensus       108 ~~~yDVIIVGG-g~G~~~Aa~LA~------~G~rVlLlEr~~~~~~~r~-~-~Is~~~l~~L~~lGl~~~~~ie~~i~~~  178 (546)
                      +.+|||||||| |+|+++|+.||+      +|++|+||||+.+|+.+-+ . -+++..++.|...........+.....+
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~  109 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTED  109 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEE
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecc
Confidence            33799999995 679999999998      8999999999999987642 2 2566665554211000000000000000


Q ss_pred             ---c--CCCcccccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEE
Q 009027          179 ---F--NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (546)
Q Consensus       179 ---~--~~~~v~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlV  253 (546)
                         +  ......+............++.+.+..++.++.+++.+.|+++..+..+.++..+++++......+     ...
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~-----~~~  184 (380)
T d2gmha1         110 RFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATN-----DVG  184 (380)
T ss_dssp             EEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEEC-----CEE
T ss_pred             eEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccc-----ccc
Confidence               0  000000000001111122346788999999999999999999999999999888777654433111     112


Q ss_pred             EEecCCChHHHHHhcCCCCCCeeeeEEEEEeeccCCCceeeeeccCCcccccCCCCcceEEEEecCCCCCccceEEEEEc
Q 009027          254 IDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY  333 (546)
Q Consensus       254 V~ADG~~S~vr~ql~~~~~~~~~~~~vg~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~W~~fp~~~g~~~~~~~l~~~  333 (546)
                      ++.++.               ..     ....  +.            ...     ....| +|..+.            
T Consensus       185 ~~~~~~---------------~~-----~~~~--~~------------~~~-----~~~~~-v~~~G~------------  212 (380)
T d2gmha1         185 IQKDGA---------------PK-----TTFE--RG------------LEL-----HAKVT-IFAEGC------------  212 (380)
T ss_dssp             ECTTSC---------------EE-----EEEE--CC------------CEE-----ECSEE-EECCCT------------
T ss_pred             cccccc---------------cc-----cccc--cc------------ccc-----cccEE-EEeeeC------------
Confidence            211110               00     0000  00            000     01112 333321            


Q ss_pred             cCCCCCCccH-HHHHHHHHHhCccccccccCcceEeeeeeeeeccccCCCCCccCCcEEEeCCCCCCCCCCCCCcchhhH
Q 009027          334 IDPQAGSPKL-EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT  412 (546)
Q Consensus       334 ~~~~~~~~~l-~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLVGDAA~~v~Plsg~G~g~~l  412 (546)
                            +..+ +++++.+..    ....        .+..| ++    ...+...++++||||||++++|+++.|+..++
T Consensus       213 ------~G~l~k~li~~~~l----~~~~--------~~~~G-~~----sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am  269 (380)
T d2gmha1         213 ------HGHLAKQLYKKFDL----RANC--------EPQGG-FQ----SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAM  269 (380)
T ss_dssp             ------TCHHHHHHHHHTTT----TTTS--------CCCCG-GG----GCCCCEETTEEECTTTTCCCBTTTTBCHHHHH
T ss_pred             ------CCcchHHHHhhhhh----cccc--------ccccc-cc----cccccccCCeeEEeccccccchhhcCCeeeee
Confidence                  0112 233332211    0000        00001 11    12255789999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCChhhHH-HHhhhh
Q 009027          413 RHLGRLSTGVYEAVRGDFVDSYSLS-LLNPYM  443 (546)
Q Consensus       413 rd~~~Lae~I~~Al~~g~l~~~~l~-~L~~Ye  443 (546)
                      ......|+.|.+|+..++.+.+.+. .+..|+
T Consensus       270 ~SG~lAAeai~~al~~~~~~~~~~~~~~~~y~  301 (380)
T d2gmha1         270 KSGTLAAESIFNQLTSENLQSKTIGLHVTEYE  301 (380)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHH
T ss_pred             ccHHHHHHHHHHHHHcCCcccchhhhhhhhHH
Confidence            9888888999999999887665543 245566

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.62  E-value=1.5e-16  Score=157.18  Aligned_cols=153  Identities=13%  Similarity=0.077  Sum_probs=107.9

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC---CCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~---~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~  185 (546)
                      .+||+|||| ++|+++|+.|+++|++|+||||++.+   +..+...+++++++.|+++|+++.  +..... ...  .+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~--l~~~~~-~~~--~~~   76 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRR--MARDGL-VHE--GVE   76 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHH--HHHHCE-EES--CEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHH--HHhhcc-ccc--ceE
Confidence            579999996 56999999999999999999998743   233556799999999999999864  221110 111  111


Q ss_pred             ccCC-c------cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEE-EEEEeCCeEEEEEc-CCc--EEEcCEEE
Q 009027          186 FEGK-G------EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVS-SICTYENAAVLLLA-EGK--ILSSHLII  254 (546)
Q Consensus       186 f~~~-~------~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~-~i~~~~dgv~V~~~-~g~--~i~ArlVV  254 (546)
                      +... .      .........+.+++..+.+.|.+.+.+.++.+......+ .+..+++++.|++. +|+  +++||+||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vV  156 (292)
T d1k0ia1          77 IAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIA  156 (292)
T ss_dssp             EEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEE
T ss_pred             EEecccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEE
Confidence            1110 0      001112234578899999999999999988777666555 44456667777664 443  68999999


Q ss_pred             EecCCChHHHHHh
Q 009027          255 DAMGNFSPVVKQI  267 (546)
Q Consensus       255 ~ADG~~S~vr~ql  267 (546)
                      +|||.+|.+|+++
T Consensus       157 gADG~~S~vR~~i  169 (292)
T d1k0ia1         157 GCDGFHGISRQSI  169 (292)
T ss_dssp             ECCCTTCSTGGGS
T ss_pred             ECCCCCCccccee
Confidence            9999999999764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.52  E-value=1.2e-13  Score=133.41  Aligned_cols=152  Identities=14%  Similarity=0.081  Sum_probs=102.6

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC--cccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR--EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~--~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      -.|+|||| ++|+++|..|+++|++|+|+||++.+..  .....++++..+.|.++|+..+..  ......+  ....+.
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~--~~~~~~~--~~~~~~   80 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSI--SVPSSSM--EYVDAL   80 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGT--CBCCCEE--EEEETT
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhh--ccCCCcc--eeEecc
Confidence            46999995 5799999999999999999999876543  234568999999999999864311  0000000  001111


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChHHHHHh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQI  267 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~vr~ql  267 (546)
                      ...................+...+..  ...+..++.+++++++..++++++|+++||.+++++++|+|||.+|.++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~~r~~~  158 (265)
T d2voua1          81 TGERVGSVPADWRFTSYDSIYGGLYE--LFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRL  158 (265)
T ss_dssp             TCCEEEEEECCCCEEEHHHHHHHHHH--HHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHHHHHH
T ss_pred             CCceecccccccccchhHHHHHHHHH--hcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccccccccc
Confidence            11111110101111222222222222  2346789999999999999999999999999999999999999999999876


Q ss_pred             c
Q 009027          268 R  268 (546)
Q Consensus       268 ~  268 (546)
                      .
T Consensus       159 ~  159 (265)
T d2voua1         159 L  159 (265)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.52  E-value=3.3e-14  Score=136.96  Aligned_cols=151  Identities=23%  Similarity=0.283  Sum_probs=91.5

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc----c--ccCC-HHHHHHHHHcCCCCcccchhhhhhccCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ----E--WNIS-RKELLELVESGILVEDDIDEATATKFNP  181 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r----~--~~Is-~~~l~~L~~lGl~~~~~ie~~i~~~~~~  181 (546)
                      +|||||||| ++|+++|+.|+++|++|+||||++.++...    .  .++. ......+................ .+..
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   80 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFS-IFNN   80 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHH-HSCH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhh-hhhh
Confidence            699999995 579999999999999999999988665210    0  0100 00011111110000000000000 0000


Q ss_pred             C----cccccCCcccccc---ccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEE
Q 009027          182 N----RCGFEGKGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLI  253 (546)
Q Consensus       182 ~----~v~f~~~~~l~~~---~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlV  253 (546)
                      .    .+...+ ......   ..+........+.+.|.+++++.|++++++++|+++..+++.+. |.++++++++||.|
T Consensus        81 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~v  159 (251)
T d2i0za1          81 EDIITFFENLG-VKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHV  159 (251)
T ss_dssp             HHHHHHHHHTT-CCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCE
T ss_pred             HHHHHHHHhcC-CccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeE
Confidence            0    000000 000000   01112234567888999999999999999999999999888765 77788999999999


Q ss_pred             EEecCCChH
Q 009027          254 IDAMGNFSP  262 (546)
Q Consensus       254 V~ADG~~S~  262 (546)
                      |.|+|..|.
T Consensus       160 I~AtGg~S~  168 (251)
T d2i0za1         160 VIAVGGKSV  168 (251)
T ss_dssp             EECCCCSSS
T ss_pred             EEccCCccc
Confidence            999999984

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.45  E-value=2.9e-13  Score=132.53  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=60.5

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH-HHHHhcC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRS  269 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~~  269 (546)
                      ..+++..+...|.+.+++.|++++++++|+++..+++++.|.+++| +++|+.||.|.|..|+ +.+.+++
T Consensus       145 g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~l~~~lg~  214 (281)
T d2gf3a1         145 GVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLNL  214 (281)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGTE
T ss_pred             ccccccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchhhHHhcCC
Confidence            3578999999999999999999999999999999999999998766 6999999999999887 4455543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.41  E-value=6.6e-13  Score=129.33  Aligned_cols=71  Identities=23%  Similarity=0.202  Sum_probs=62.8

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH-HHHHhcCCC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSGR  271 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~~~~  271 (546)
                      ..+++..+.+.|.+.+.+.|++++++++|+++..+++.+.|++++| +|+|+.||.|.|.+|+ +.+.+|+..
T Consensus       146 g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~  217 (276)
T d1ryia1         146 VHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNN  217 (276)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCC
T ss_pred             eeeecccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCc
Confidence            3589999999999999999999999999999998888899998666 6999999999999997 777887643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.28  E-value=1.9e-12  Score=125.38  Aligned_cols=151  Identities=19%  Similarity=0.172  Sum_probs=85.4

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc------ccccCCHHHHHHHHHcCCCCcccchhhhhhccCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRKELLELVESGILVEDDIDEATATKFNPN  182 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~------r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~  182 (546)
                      .|||||||| ++|+++|+.|+++|++|+||||.+.++.+      ...+++............ ....+++.+.......
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~-~~~~~~~~l~~~~~~~   82 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ-NPHFVKSALARYTNWD   82 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECS-CTTSTHHHHHHSCHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhcc-ChHHHHHHhhhhcccc
Confidence            699999995 57999999999999999999999876531      001111000000000000 0000000000000000


Q ss_pred             ccccc-C-Ccccccccc--ccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE---EEEcCCcEEEcCEEEE
Q 009027          183 RCGFE-G-KGEIWVEDI--LNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIID  255 (546)
Q Consensus       183 ~v~f~-~-~~~l~~~~~--l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~---V~~~~g~~i~ArlVV~  255 (546)
                      .+.+. . ...+..++.  +...-....+.+.|.+.+.+.|++++.+++|+++...+++..   +...++.+++|+.||.
T Consensus        83 ~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIi  162 (253)
T d2gqfa1          83 FISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIV  162 (253)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEE
T ss_pred             hhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEE
Confidence            00000 0 000011000  001123456888999999999999999999999988766422   2233677899999999


Q ss_pred             ecCCCh
Q 009027          256 AMGNFS  261 (546)
Q Consensus       256 ADG~~S  261 (546)
                      |+|..|
T Consensus       163 AtGG~S  168 (253)
T d2gqfa1         163 ATGGLS  168 (253)
T ss_dssp             CCCCSS
T ss_pred             cCCccc
Confidence            999887

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.23  E-value=7.7e-11  Score=116.25  Aligned_cols=71  Identities=17%  Similarity=0.214  Sum_probs=61.0

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCChH-HHHHhcCCC
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIRSGR  271 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S~-vr~ql~~~~  271 (546)
                      ..+++..+...|.+.+.+.|++++++++|+++..+++.++ |.+++| +|+|+.||.|.|.+|+ +.+.++...
T Consensus       143 g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~l  215 (305)
T d1pj5a2         143 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAV  215 (305)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCC
T ss_pred             cccchhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCcc
Confidence            3589999999999999999999999999999999999875 676555 7999999999999998 666665543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.10  E-value=7e-10  Score=109.59  Aligned_cols=156  Identities=14%  Similarity=0.149  Sum_probs=86.4

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcc-----ccc--CCH-----------HHH-HHHHHcC--CC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQ-----EWN--ISR-----------KEL-LELVESG--IL  166 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r-----~~~--Is~-----------~~l-~~L~~lG--l~  166 (546)
                      .+||||||||| +|+++|+.|+++|++|+||||.+..+...     ...  .+.           ... +.....+  +.
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~   94 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN   94 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhcc
Confidence            37999999965 69999999999999999999998765211     011  111           100 0000011  11


Q ss_pred             Ccccchh-------hhh--hcc--CCCcccccCCcccc-ccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEe
Q 009027          167 VEDDIDE-------ATA--TKF--NPNRCGFEGKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY  234 (546)
Q Consensus       167 ~~~~ie~-------~i~--~~~--~~~~v~f~~~~~l~-~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~  234 (546)
                      ++.-+..       .+.  .++  .............. .....+.......+.+.+.+++.+.|++++++++++++..+
T Consensus        95 d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~  174 (308)
T d1y0pa2          95 DPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKD  174 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC
T ss_pred             chHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhh
Confidence            1000000       000  000  00000000000000 00001122234567888899999999999999999999887


Q ss_pred             CCe-E---EEEEcCC--cEEEcCEEEEecCCChHHH
Q 009027          235 ENA-A---VLLLAEG--KILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       235 ~dg-v---~V~~~~g--~~i~ArlVV~ADG~~S~vr  264 (546)
                      +++ +   .+.-.++  .+|+||-||.|+|..+...
T Consensus       175 ~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~  210 (308)
T d1y0pa2         175 DKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNN  210 (308)
T ss_dssp             TTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCH
T ss_pred             cccccccccccccccceeEeecCeEEEccCcccccH
Confidence            764 2   2332233  2799999999999877544

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.05  E-value=1.6e-09  Score=107.93  Aligned_cols=157  Identities=15%  Similarity=0.148  Sum_probs=87.2

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccc-----ccC-------------CHHH-HHHHHHc--CC
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQE-----WNI-------------SRKE-LLELVES--GI  165 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~-----~~I-------------s~~~-l~~L~~l--Gl  165 (546)
                      ++.+|||||||| +|+++|+.||++|++|+||||.+..+..-.     ++.             ++.. .+.....  ++
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~  100 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNI  100 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccc
Confidence            346999999965 699999999999999999999887653211     110             1111 0001111  11


Q ss_pred             CCcccchhh-----------hhhccCCCcccccCCccccc-cccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEE
Q 009027          166 LVEDDIDEA-----------TATKFNPNRCGFEGKGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT  233 (546)
Q Consensus       166 ~~~~~ie~~-----------i~~~~~~~~v~f~~~~~l~~-~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~  233 (546)
                      .++..++..           .............+...... ............+.+.|.+++.+.|++|+.+++++++..
T Consensus       101 ~d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~  180 (322)
T d1d4ca2         101 NDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILE  180 (322)
T ss_dssp             SCHHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEEC
T ss_pred             cCHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccc
Confidence            111000000           00000000000000000000 000112233556788899999999999999999999987


Q ss_pred             eCCe----EEEEEcCCc--EEEcCEEEEecCCChHHH
Q 009027          234 YENA----AVLLLAEGK--ILSSHLIIDAMGNFSPVV  264 (546)
Q Consensus       234 ~~dg----v~V~~~~g~--~i~ArlVV~ADG~~S~vr  264 (546)
                      ++++    +.+.-.++.  .|+||-||.|+|..+...
T Consensus       181 d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~  217 (322)
T d1d4ca2         181 DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNN  217 (322)
T ss_dssp             CSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCH
T ss_pred             cccccccceEEEeecccEEEEeCCeEEEcCCCcccCH
Confidence            6653    334333332  699999999999876533

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.97  E-value=1e-09  Score=108.93  Aligned_cols=133  Identities=19%  Similarity=0.190  Sum_probs=86.9

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++|||||||| .|+++|..|.++|++|+|+||++.++.  .|...+       .-|+.    .+. ....+     .+..
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGG--tW~~n~-------ypg~~----~d~-~~~~~-----~~s~   67 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG--VWYWNR-------YPGAR----CDI-ESIEY-----CYSF   67 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHCC-------CTTCB----CSS-CTTTS-----SCCS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccc--ccccCC-------CCCce----ecc-ccccc-----cccc
Confidence            7999999965 699999999999999999999876552  231100       00110    000 00000     0000


Q ss_pred             Cccccc-cccccceeCHHHHHHHHHHHHHhcCC--EEEeCceEEEEEEeC--CeEEEEEcCCcEEEcCEEEEecCCCh
Q 009027          189 KGEIWV-EDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       189 ~~~l~~-~~~l~~~V~~~~L~~~L~~~a~~~G~--~v~~~t~v~~i~~~~--dgv~V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      ...... .+....-..+..+.+.|.+.+.+.+.  .|+++|+|+++..++  +.+.|++.++.+++||+||-|+|..|
T Consensus        68 ~~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          68 SEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  145 (298)
T ss_dssp             CHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             cccccCCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccc
Confidence            000000 00001113466788888888888887  699999999998654  47999998999999999999999765

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.93  E-value=6.9e-09  Score=103.19  Aligned_cols=58  Identities=14%  Similarity=0.169  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe----EEEEEcCCc--EEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg----v~V~~~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ..+.+.|.+++++.|++++.+++++++..++++    +++...++.  .+.||-||-|+|..+.
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  211 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  211 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecccccc
Confidence            457788999999999999999999999887664    233333443  6899999999997664

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.80  E-value=3.8e-08  Score=97.76  Aligned_cols=57  Identities=12%  Similarity=0.194  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EEE---cCCc--EEEcCEEEEecCCCh
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEGK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~~---~~g~--~i~ArlVV~ADG~~S  261 (546)
                      ..+...|.+++.+.|++++.++.++++..+++.+. +.+   .+|+  +++|+-||-|+|..+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~  220 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccc
Confidence            46778888999999999999999999998888654 222   3454  699999999999876

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.77  E-value=2.9e-08  Score=99.12  Aligned_cols=60  Identities=12%  Similarity=-0.057  Sum_probs=51.4

Q ss_pred             eCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC---c---EEEcCEEEEecCCCh
Q 009027          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---K---ILSSHLIIDAMGNFS  261 (546)
Q Consensus       202 V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g---~---~i~ArlVV~ADG~~S  261 (546)
                      +.+..+.+.|...+...+..|+.+++|++++.+++.+.|++.++   .   +..+|.||.|+|..|
T Consensus       110 ~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         110 PHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             CBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             CchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            55788889998888888889999999999999999999887542   1   567999999999887

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.72  E-value=1.4e-08  Score=99.03  Aligned_cols=134  Identities=15%  Similarity=0.263  Sum_probs=80.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHh-CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhh---hhhccCCCcc
Q 009027          110 TFDVIVCGG-TLGIFIATALSF-KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEA---TATKFNPNRC  184 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~-~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~---i~~~~~~~~v  184 (546)
                      ++||||||| ++|+++|+.||+ .|++|+||||++.++.. .|+-          -.+++...+...   +..++   .+
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~-~~~~----------g~~~~~~~~~~~~~~~~~~~---g~   98 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG-AWLG----------GQLFSAMIVRKPAHLFLDEI---GV   98 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT-TTCC----------STTCCCEEEETTTHHHHHHH---TC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCc-eeec----------CEEcCHHHHhhhHHHHHHHc---CC
Confidence            699999995 569999999997 59999999999866532 1110          001111000000   00000   01


Q ss_pred             cccCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE-EE--Ec------------CCcEEE
Q 009027          185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL--LA------------EGKILS  249 (546)
Q Consensus       185 ~f~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~-V~--~~------------~g~~i~  249 (546)
                      .|....     ...........++.++.+.+...+..++.++.+.++...++.+. +.  ..            ++.+++
T Consensus        99 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~  173 (278)
T d1rp0a1          99 AYDEQD-----TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVME  173 (278)
T ss_dssp             CCEECS-----SEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEE
T ss_pred             ceecCC-----ccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeec
Confidence            111000     01111233456777777778777889999999999888877653 11  10            134799


Q ss_pred             cCEEEEecCCChH
Q 009027          250 SHLIIDAMGNFSP  262 (546)
Q Consensus       250 ArlVV~ADG~~S~  262 (546)
                      |+++|+|+|...+
T Consensus       174 a~~vv~a~G~~~~  186 (278)
T d1rp0a1         174 AKIVVSSCGHDGP  186 (278)
T ss_dssp             EEEEEECCCSSST
T ss_pred             cceEEECcCCCcc
Confidence            9999999997643

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.65  E-value=1.5e-07  Score=89.15  Aligned_cols=119  Identities=18%  Similarity=0.151  Sum_probs=70.6

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC-CCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK-GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~-~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .|||||||| ++|+.+|+++||.|.||+||+++... +...+ |-+         .|..    ....+..+..       
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~c-np~---------~gg~----~kg~l~reid-------   60 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFL-PPK---------PPFP----PGSLLERAYD-------   60 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS-CCC---------SCCC----TTCHHHHHCC-------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccccc-CCc---------cccC----CCcceeeeee-------
Confidence            599999995 57999999999999999999976321 10000 000         0000    0000111110       


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhc-CCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEcCEEEEecCCCh
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFS  261 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~-G~~v~~~t~v~~i~~~~dgv~-V~~~~g~~i~ArlVV~ADG~~S  261 (546)
                      ..         +..+  ..+.....+.+... +.+++++ +|+++..+++.+. |.+.+|.+|+|+-||-|.|.+.
T Consensus        61 ~k---------G~av--~a~raQ~k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          61 PK---------DERV--WAFHARAKYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             TT---------CCCH--HHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             cc---------chhh--hhHHHHHHHHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence            00         0000  11222223333333 4577655 6788888888765 8888898999999999999874

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=1.2e-07  Score=94.00  Aligned_cols=55  Identities=15%  Similarity=0.137  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEE--EE--EcCCc--EEEcCEEEEecCCCh
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LL--LAEGK--ILSSHLIIDAMGNFS  261 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~--V~--~~~g~--~i~ArlVV~ADG~~S  261 (546)
                      +...+.+.++..++++++++.++++..+++.+.  +.  ..+|+  .++|+-||-|+|..+
T Consensus       137 ~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g  197 (311)
T d1kf6a2         137 LHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (311)
T ss_dssp             HHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHhHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCcc
Confidence            334444444445789999999999998887654  22  23564  679999999999876

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=1.7e-08  Score=93.50  Aligned_cols=49  Identities=10%  Similarity=0.059  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEcCEEEE
Q 009027          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIID  255 (546)
Q Consensus       207 L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v~V~~~~g~~i~ArlVV~  255 (546)
                      +-+.|.+.+++.|++|+.+++|++|..++++  +++.+.+|++++||.||.
T Consensus       238 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~  288 (297)
T d2bcgg1         238 LPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIA  288 (297)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEE
T ss_pred             HHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEE
Confidence            5566778888889999999999999876543  544456788999999884

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=3.3e-07  Score=77.50  Aligned_cols=92  Identities=15%  Similarity=0.189  Sum_probs=73.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      -|+||||| +|+-+|..|++.|.+|.|+|+.+..-.                                          . 
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~------------------------------------------~-   59 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP------------------------------------------S-   59 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------T-
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecchhhh------------------------------------------h-
Confidence            38999965 699999999999999999998752110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCEEEEecC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~ArlVV~ADG  258 (546)
                                 .| ..+.+.+.+.+++.|++++.++.++.+..+++ .++|++++|+++.+++||-|.|
T Consensus        60 -----------~d-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          60 -----------FD-PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             -----------SC-HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             -----------cc-hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence                       01 12446667777788999999999999987765 4788899999999999999987

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=3.7e-07  Score=90.91  Aligned_cols=58  Identities=14%  Similarity=0.245  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe-EE----EEEcCCc--EEEcCEEEEecCCChH
Q 009027          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV----LLLAEGK--ILSSHLIIDAMGNFSP  262 (546)
Q Consensus       205 ~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg-v~----V~~~~g~--~i~ArlVV~ADG~~S~  262 (546)
                      ..+...|.+++.+.+++++..+.++.+..++++ +.    ....+|+  .+.|+.||-|+|....
T Consensus       143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~  207 (330)
T d1neka2         143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccc
Confidence            357788888998999999999999998775553 21    1223454  7899999999998753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.53  E-value=2.7e-07  Score=80.09  Aligned_cols=93  Identities=17%  Similarity=0.285  Sum_probs=71.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| +|+-+|..|++.|.+|.|+|+++.+-..                 .                         
T Consensus        37 ~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~-----------------~-------------------------   74 (133)
T d1q1ra2          37 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER-----------------V-------------------------   74 (133)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----------------T-------------------------
T ss_pred             EEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc-----------------c-------------------------
Confidence            59999975 6999999999999999999987631100                 0                         


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCe--E-EEEEcCCcEEEcCEEEEecC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--A-VLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dg--v-~V~~~~g~~i~ArlVV~ADG  258 (546)
                                 . ...+.+.+.+.+++.|++++.+++++.+....+.  + .|.+++|+++.|++||-|-|
T Consensus        75 -----------~-~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          75 -----------T-APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             -----------S-CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             -----------c-chhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence                       0 0123455666777889999999999999876543  3 36788999999999999987

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5.2e-07  Score=78.51  Aligned_cols=94  Identities=20%  Similarity=0.228  Sum_probs=74.8

Q ss_pred             cEEEEcch-HHHHHHHHHHh----CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          112 DVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~----~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      .++||||| +|+-+|..|++    .|.+|.++|+.+.+-                     .                   
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l---------------------~-------------------   78 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM---------------------G-------------------   78 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT---------------------T-------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC---------------------c-------------------
Confidence            48999975 68888888863    599999999765211                     0                   


Q ss_pred             cCCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       187 ~~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                               ..    ++ ..+.+.+.+.+.+.|++++.++.+.++..+++.+.|++++|+++.||+||-|.|.
T Consensus        79 ---------~~----~~-~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          79 ---------KI----LP-EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             ---------TT----SC-HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             ---------cc----CC-HHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence                     00    01 2345677788889999999999999999999999999999999999999999984

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.8e-07  Score=91.67  Aligned_cols=44  Identities=14%  Similarity=0.102  Sum_probs=39.2

Q ss_pred             HHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       215 a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                      +.+.|++++.+++|++|..++++|.|++.+|++++||.||.|..
T Consensus       217 ~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p  260 (383)
T d2v5za1         217 MDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIP  260 (383)
T ss_dssp             HHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSC
T ss_pred             HHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCC
Confidence            34568899999999999999999999999999999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.44  E-value=8.3e-07  Score=75.60  Aligned_cols=89  Identities=21%  Similarity=0.391  Sum_probs=68.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| +|+-+|..|+++|.+|.|+|+.+.+-                     .                     . 
T Consensus        32 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l---------------------~---------------------~-   68 (121)
T d1d7ya2          32 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM---------------------S---------------------R-   68 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT---------------------T---------------------T-
T ss_pred             eEEEECcchhHHHHHHHhhcccceEEEEeeccccc---------------------c---------------------c-
Confidence            59999975 69999999999999999999876310                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                                .++ ..+.+.+.+.+++.|++++.+++++++.  ++  .|.++||+++.|++||-|.|
T Consensus        69 ----------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~~~--~~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          69 ----------AAP-ATLADFVARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             ----------TSC-HHHHHHHHHHHHTTTCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSC
T ss_pred             ----------cCC-HHHHHHHHHHHHHCCcEEEeCCEEEEEe--CC--EEEECCCCEEECCEEEEeeC
Confidence                      001 2345666777888999999999998753  33  35678999999999999987

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=3.3e-07  Score=89.98  Aligned_cols=36  Identities=19%  Similarity=0.397  Sum_probs=31.0

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+|||||||+ ++|+++|+.+++.| +|+||||.+..+
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~g   42 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTE   42 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCC
Confidence            4699999996 56999999988888 999999998665

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.43  E-value=1.4e-06  Score=73.92  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=74.5

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      -.++|+||| +|+=+|..|++.|.+|.++|+....-.                                           
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~-------------------------------------------   59 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-------------------------------------------   59 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------------------------------
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC-------------------------------------------
Confidence            359999976 699999999999999999997753110                                           


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEcCEEEEecC
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMG  258 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g---~~i~ArlVV~ADG  258 (546)
                            .     .| ..+.+.+.+.+++.|++++.+++++++..++++++|++.++   +++.++.||-|-|
T Consensus        60 ------~-----~d-~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          60 ------A-----VD-EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ------T-----SC-HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             ------c-----cc-chhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence                  0     11 12456667777888999999999999999999999888653   4899999999987

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=9.8e-07  Score=80.74  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=76.8

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++||+|||| ++|+.+|..|+|+|++|+|+|+.........              +.         +...   .+.  . 
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~--------------~~---------~~~~---~~~--~-   55 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPG--------------GQ---------LTTT---TDV--E-   55 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT--------------CG---------GGGC---SEE--C-
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccc--------------cc---------cccc---hhh--h-
Confidence            699999996 5799999999999999999997764332110              00         0000   000  0 


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                       ..+.    ....+....|...+.+++.+.|+++..+ .|.+++..++...+.+ +..++.++.++.|.|..
T Consensus        56 -~~~~----~~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~-~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          56 -NFPG----FPEGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFT-DSKAILADAVILAIGAV  120 (192)
T ss_dssp             -CSTT----CTTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred             -cccc----ccccccchHHHHHHHHHHHhhcceeeee-eEEecccccCcEEecc-cceeeeeeeEEEEeeee
Confidence             0000    0112445677778888888899998765 5778877777777765 45578999999888853

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.34  E-value=3.4e-06  Score=71.00  Aligned_cols=89  Identities=21%  Similarity=0.299  Sum_probs=69.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| +|+-+|..|++.|.+|.|+|+.+..-                     .                     . 
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il---------------------~---------------------~-   60 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL---------------------S---------------------G-   60 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------------------T---------------------T-
T ss_pred             eEEEECCCccceeeeeeecccccEEEEEEecceec---------------------c---------------------c-
Confidence            69999976 69999999999999999999875310                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc-CC--cEEEcCEEEE
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EG--KILSSHLIID  255 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~-~g--~~i~ArlVV~  255 (546)
                                 +|+ .+.+.+.+.+++.|++++.+++++++...++++.|.+. +|  +++.|+.||-
T Consensus        61 -----------~d~-~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlv  116 (117)
T d1ebda2          61 -----------FEK-QMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV  116 (117)
T ss_dssp             -----------SCH-HHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEE
T ss_pred             -----------ccc-hhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEE
Confidence                       111 24566677778899999999999999999999888764 44  4799999873

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.29  E-value=1.6e-06  Score=81.42  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=31.1

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      +.+||||||| +|+++|+.|+++|++|+||||...+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~   41 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            5689999965 6999999999999999999997654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.28  E-value=2.4e-06  Score=72.78  Aligned_cols=90  Identities=16%  Similarity=0.188  Sum_probs=67.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| +|+-+|..|++.|.+|.|+|+.+.+-                     .                       
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l---------------------~-----------------------   67 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL---------------------G-----------------------   67 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT---------------------T-----------------------
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecCccc---------------------c-----------------------
Confidence            58999965 69999999999999999999875210                     0                       


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEe
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~A  256 (546)
                           .    .++ ..+-+.+.+.+++.|++++.+++++++..+ +.+.+.+.+|+++.|++||-|
T Consensus        68 -----~----~~d-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          68 -----V----YLD-KEFTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             -----T----TCC-HHHHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEESSCEEECSEEEEC
T ss_pred             -----c----ccc-hhhHHHHHHHhhcCCeEEEeCceEEEEEcC-CCEEEEEeCCCEEECCEEEEE
Confidence                 0    001 124456677778889999999999998654 344434568889999999976

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.6e-06  Score=77.42  Aligned_cols=109  Identities=12%  Similarity=0.108  Sum_probs=75.1

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~  188 (546)
                      ++||+|||| ++|+.+|..|+|.|++|+||||....+..            +     .. ..++     .+    ..|  
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~------------~-----~~-~~i~-----~~----~~~--   55 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL------------T-----TT-TEVE-----NW----PGD--   55 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGG------------G-----GC-SBCC-----CS----TTC--
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccc------------c-----cc-chhh-----hh----hcc--
Confidence            689999996 57999999999999999999987643310            0     00 0000     00    000  


Q ss_pred             CccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       189 ~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                            +    -.+....+.+.+...+.+.++++..+ +|+.+...++..+|+.. ..++.++.+|.|.|.
T Consensus        56 ------~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~-~~~~~~~~viva~G~  114 (190)
T d1trba1          56 ------P----NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGD-NGEYTCDALIIATGA  114 (190)
T ss_dssp             ------C----SSCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEES-SCEEEEEEEEECCCE
T ss_pred             ------c----cccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEEe-eeeEeeeeeeeecce
Confidence                  0    11335667777888888889888765 68888877777777764 457889999988884

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.24  E-value=3.8e-06  Score=70.62  Aligned_cols=93  Identities=14%  Similarity=0.225  Sum_probs=71.5

Q ss_pred             cEEEEcch-HHHHHHHHHH---hCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          112 DVIVCGGT-LGIFIATALS---FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA---~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .|+||||| +|+-+|..|+   +.|.+|.++|+.+..-.                                         
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~-----------------------------------------   58 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-----------------------------------------   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-----------------------------------------
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceecccccccc-----------------------------------------
Confidence            59999976 6998887655   45999999998642100                                         


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEcCEEEEecCC
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv-~V~~~~g~~i~ArlVV~ADG~  259 (546)
                              .     +|+ .+.+.+.+.+++.|++++.+++++++..+++++ .+.+++|+++.|++||-|.|+
T Consensus        59 --------~-----~d~-~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          59 --------G-----FDS-ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             --------T-----SCH-HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             --------c-----ccc-hhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence                    0     111 345667777888999999999999998876654 578889999999999999984

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.24  E-value=6.7e-06  Score=69.33  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=70.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+||...+-.                               .            
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-------------------------------~------------   60 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-------------------------------K------------   60 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-------------------------------T------------
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhccccc-------------------------------c------------
Confidence            49999976 699999999999999999998752100                               0            


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEE-cCEEEEe
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILS-SHLIIDA  256 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~-ArlVV~A  256 (546)
                                 .| ..+.+.+.+.+.+.|++++.+++++++...++ .++|++++|+++. ++.||-|
T Consensus        61 -----------~d-~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          61 -----------FD-ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             -----------cc-HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence                       01 24556777788888999999999999986655 5778999998775 5998866

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.19  E-value=4.7e-06  Score=71.19  Aligned_cols=93  Identities=16%  Similarity=0.173  Sum_probs=74.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .++|+||| +|+=+|..+++.|.+|.++|+.+..-                     .                       
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il---------------------~-----------------------   63 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM---------------------Q-----------------------   63 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS---------------------T-----------------------
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc---------------------c-----------------------
Confidence            59999976 69999999999999999999875210                     0                       


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC--C--cEEEcCEEEEecCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGN  259 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~--g--~~i~ArlVV~ADG~  259 (546)
                      .          .| ..+.+.+.+.+.+.|++++.++++.++..+++++.|++.+  |  +++.|++|+.|.|+
T Consensus        64 ~----------~d-~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          64 G----------AD-RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             T----------SC-HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             c----------ch-hhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            0          01 1345677778888999999999999999999998888753  2  37999999999984

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.14  E-value=1.1e-06  Score=84.19  Aligned_cols=35  Identities=37%  Similarity=0.581  Sum_probs=31.1

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ||||||||| +|.++|..+|++|+||+|||+....+
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GG   37 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGG   37 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            999999964 68899999999999999999987654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=2e-05  Score=66.80  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=68.2

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      -++||||| +|+=+|..|++.|.+|.|+|+.+.+-                     +                       
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l---------------------~-----------------------   60 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG---------------------A-----------------------   60 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------------------S-----------------------
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccccc---------------------h-----------------------
Confidence            59999976 69999999999999999999875210                     0                       


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEE--EEcCC-----cEEEcCEEEEe
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL--LLAEG-----KILSSHLIIDA  256 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V--~~~~g-----~~i~ArlVV~A  256 (546)
                      .          .| ..+.+.+.+.+++.|++++.+++++++...+++..+  ++.++     +++.|++|+-|
T Consensus        61 ~----------~d-~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          61 S----------MD-GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             S----------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             h----------hh-hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            0          11 234566777788889999999999999988776444  44332     37999999865

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.12  E-value=9.4e-07  Score=81.86  Aligned_cols=37  Identities=35%  Similarity=0.441  Sum_probs=32.7

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+|||||||| |+|+++|..++++|++|+|||+...+.
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~   39 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            4799999995 679999999999999999999887554

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=4e-06  Score=76.20  Aligned_cols=94  Identities=17%  Similarity=0.216  Sum_probs=63.1

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      ....|+|||| |+|+++|..|+++|++|+|+|+.+.++-.            |.         +    .... +.     
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~------------l~---------~----~~~~-p~-----   90 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ------------FN---------I----AKQI-PG-----   90 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT------------HH---------H----HTTS-TT-----
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCce------------EE---------E----EEeC-cc-----
Confidence            3578999995 67999999999999999999999866521            10         0    0000 00     


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCC
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~  260 (546)
                       ..            +...+.+.+.+.++..|++++.++.|+.             + .....+-||-|.|..
T Consensus        91 -~~------------~~~~~~~~~~~~~~~~gV~i~l~~~Vt~-------------~-~~~~~d~vilAtG~~  136 (179)
T d1ps9a3          91 -KE------------EFYETLRYYRRMIEVTGVTLKLNHTVTA-------------D-QLQAFDETILASGIP  136 (179)
T ss_dssp             -CT------------THHHHHHHHHHHHHHHTCEEEESCCCCS-------------S-SSCCSSEEEECCCEE
T ss_pred             -cc------------hHHHHHHHHHHhhhcCCeEEEeCCEEcc-------------c-ccccceeEEEeecCC
Confidence             00            1134556677777788999999987742             1 123567788899853

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.10  E-value=8.1e-07  Score=83.36  Aligned_cols=38  Identities=45%  Similarity=0.552  Sum_probs=33.1

Q ss_pred             CCcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       108 ~~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +.+|||||||| |+|+++|..++++|++|+|||+.+..+
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~G   42 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLG   42 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            34799999995 679999999999999999999987544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.7e-05  Score=66.12  Aligned_cols=92  Identities=13%  Similarity=0.165  Sum_probs=70.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| .|+-+|..|++.|.+|.|+||....-                     .                     . 
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l---------------------~---------------------~-   60 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL---------------------R---------------------S-   60 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC---------------------T---------------------T-
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc---------------------c---------------------c-
Confidence            59999976 69999999999999999999875210                     0                     0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc---CCc------EEEcCEEEEecC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGK------ILSSHLIIDAMG  258 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---~g~------~i~ArlVV~ADG  258 (546)
                                 +| ..+.+.+.+.+++.|++++.+++++++..+++++.+++.   .|+      .+.+|+||-|.|
T Consensus        61 -----------~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          61 -----------FD-SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             -----------hh-hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence                       01 124566677778889999999999999999998876642   232      577999998877

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1.1e-05  Score=72.25  Aligned_cols=108  Identities=23%  Similarity=0.247  Sum_probs=67.6

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      |||||||| ++|+.+|..+++.|++|+|||+..- +.  .          +      ...++     ..       +.  
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~g-g~--~----------~------~~~~~-----~~-------~~--   48 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG-GQ--I----------L------DTVDI-----EN-------YI--   48 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTT-GG--G----------G------GCCEE-----CC-------BT--
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEecC-Cc--c----------c------ccccc-----ee-------cc--
Confidence            99999996 5799999999999999999997521 10  0          0      00000     00       00  


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC---eEEEEEcCCcEEEcCEEEEecCC
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN---AAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d---gv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                         ..     ..++...+...+...+.+.+.+......+..+.....   .......++.+++++.++.+.|.
T Consensus        49 ---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  113 (184)
T d1fl2a1          49 ---SV-----PKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA  113 (184)
T ss_dssp             ---TB-----SSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE
T ss_pred             ---cc-----chhhhHHHHHHHHHHhhheeceeeccceeeeecccccccceeeeeeecceeeecccccccccc
Confidence               00     1133345666677777778888888877777654333   22333445567888888877774

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=1.7e-06  Score=81.06  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+|||||||| |+|+++|..+|+.|++|+|||+.+.++
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~   39 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP   39 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            4899999995 579999999999999999999887654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.08  E-value=4.6e-06  Score=70.01  Aligned_cols=90  Identities=21%  Similarity=0.244  Sum_probs=66.1

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .++||||| +|+-+|..|++.|.+|.|+|+.+..-                     +                       
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il---------------------~-----------------------   58 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL---------------------P-----------------------   58 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS---------------------T-----------------------
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeecccc---------------------c-----------------------
Confidence            69999975 69999999999999999999875210                     0                       


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcC--CcEEEcCEEEEecC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--GKILSSHLIIDAMG  258 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~--g~~i~ArlVV~ADG  258 (546)
                           .     +|+ .+.+.+.+.+.+.|++++.+++|+++.  ++...+...+  ++++.|+.||-|.|
T Consensus        59 -----~-----~d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          59 -----T-----YDS-ELTAPVAESLKKLGIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             -----T-----SCH-HHHHHHHHHHHHHTCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             -----c-----ccc-hhHHHHHHHHHhhcceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence                 0     011 244566777778899999999998873  4444444333  35899999999987

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.07  E-value=3.2e-05  Score=76.51  Aligned_cols=36  Identities=28%  Similarity=0.512  Sum_probs=30.7

Q ss_pred             cccEEEEcc-hHHHHHHHHHHh----CCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSF----KGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~----~G~rVlLlEr~~~~~  145 (546)
                      ++||||||+ ++|+++|+.+|+    +|++|+||||.+..+
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            589999995 569999988875    699999999987764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.07  E-value=1.9e-05  Score=66.32  Aligned_cols=90  Identities=18%  Similarity=0.205  Sum_probs=68.3

Q ss_pred             cEEEEcch-HHHHHHHHHH---hCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCccccc
Q 009027          112 DVIVCGGT-LGIFIATALS---FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA---~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~  187 (546)
                      .|+||||| .|+-+|..|+   ++|.+|.|+|+.+.+-                     +          .         
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL---------------------~----------~---------   61 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL---------------------R----------G---------   61 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS---------------------T----------T---------
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh---------------------c----------c---------
Confidence            59999975 6999997665   4567899999764210                     0          0         


Q ss_pred             CCccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEcCEEEEe
Q 009027          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDA  256 (546)
Q Consensus       188 ~~~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d-gv~V~~~~g~~i~ArlVV~A  256 (546)
                                    .| ..+.+.+.+.+++.|++++.++++++++..++ .+.|++++|+++.|+.||-|
T Consensus        62 --------------~d-~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          62 --------------FD-HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             --------------SC-HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             --------------cc-hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence                          01 23456777788889999999999999987655 57789999999999999876

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.04  E-value=1.4e-05  Score=67.76  Aligned_cols=87  Identities=22%  Similarity=0.374  Sum_probs=65.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      +|+||||| +|+-+|..|+++|.+|.|+|+.+...                  +                          
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~------------------~--------------------------   69 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL------------------G--------------------------   69 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT------------------T--------------------------
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEecccccc------------------C--------------------------
Confidence            58999975 69999999999999999999875210                  0                          


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                                 +| ..+.+.+.+.+.+.|++++.+++++++  +++++   +.+++++.|++||-|.|.
T Consensus        70 -----------~d-~~~~~~~~~~l~~~GV~~~~~~~v~~~--~~~~v---~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          70 -----------LD-EELSNMIKDMLEETGVKFFLNSELLEA--NEEGV---LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             -----------CC-HHHHHHHHHHHHHTTEEEECSCCEEEE--CSSEE---EETTEEEECSCEEEECCE
T ss_pred             -----------CC-HHHHHHHHHHHHHCCcEEEeCCEEEEE--eCCEE---EeCCCEEECCEEEEEEEe
Confidence                       00 123445566777889999999999876  34453   347788999999999984

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.03  E-value=1.6e-06  Score=80.34  Aligned_cols=37  Identities=24%  Similarity=0.393  Sum_probs=32.3

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+|||||||| |+|+++|..+++.|.||+|||+....+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~G   39 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG   39 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            3799999995 579999999999999999999876543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.01  E-value=2.5e-05  Score=65.63  Aligned_cols=92  Identities=18%  Similarity=0.218  Sum_probs=68.6

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .|+||||| +|+-+|..|++.|.+|.++|+.+....                                          . 
T Consensus        24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~------------------------------------------~-   60 (121)
T d1mo9a2          24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL------------------------------------------I-   60 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT------------------------------------------C-
T ss_pred             EEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc------------------------------------------c-
Confidence            59999976 699999999999999999998752110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-----cCCcEEEcCEEEEecC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-----AEGKILSSHLIIDAMG  258 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-----~~g~~i~ArlVV~ADG  258 (546)
                                 .| ..+.+.+.+.+++.|++++.+++++++..++++....+     .+++++.|++||-|.|
T Consensus        61 -----------~d-~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          61 -----------KD-NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             -----------CS-HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             -----------cc-cchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence                       01 12345666677788999999999999998876533221     2346899999999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.99  E-value=1.7e-05  Score=67.27  Aligned_cols=90  Identities=16%  Similarity=0.217  Sum_probs=69.9

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .++||||| .|+=+|..|++.|.+|.|+|+.+.+-.                                          . 
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~------------------------------------------~-   63 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP------------------------------------------T-   63 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------T-
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc------------------------------------------h-
Confidence            59999977 699999999999999999998753110                                          0 


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEc---CC--cEEEcCEEEEe
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDA  256 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~---~g--~~i~ArlVV~A  256 (546)
                                 .| ..+.+.|.+.+++.|++++.++++.++..++++++|++.   +|  +++.|++|+.|
T Consensus        64 -----------~d-~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          64 -----------MD-AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             -----------SC-HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             -----------hh-hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence                       11 134566777888899999999999999988888877653   33  36999988765

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=1.8e-06  Score=80.48  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      .+|||+|||| |+|+++|..+++.|+||+|||++...
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            4799999995 67999999999999999999987543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.96  E-value=2.4e-06  Score=84.94  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=31.1

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      .+|||||||+ +.|+++|..||++|+||+|||+...
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~   38 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI   38 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence            4799999995 4699999999999999999998754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=2.8e-06  Score=78.66  Aligned_cols=36  Identities=31%  Similarity=0.518  Sum_probs=31.7

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +|||||||| ++|+++|..+++.|++|+|||+....+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~GG   38 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGG   38 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcCC
Confidence            699999995 579999999999999999999976544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.5e-06  Score=79.88  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=32.3

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+.+||||||| +|+++|..|+++|++|+|+|++..++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG   41 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            46789999976 59999999999999999999887553

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.84  E-value=4.1e-06  Score=77.32  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=32.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +|||||||| |+|+++|..+++.|.+|+||||....+
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG   39 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGG   39 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence            799999995 579999999999999999999987654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.83  E-value=6.4e-06  Score=75.72  Aligned_cols=35  Identities=37%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLKG  145 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~-rVlLlEr~~~~~  145 (546)
                      .||+||||| +|+++|..|+++|+ +|+|+||+..++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            389999965 69999999999997 699999987553

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=5.2e-06  Score=76.80  Aligned_cols=36  Identities=36%  Similarity=0.553  Sum_probs=32.3

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +|||||||| ++|+++|..+++.|.+|+|||+...++
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG   39 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGG   39 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCC
Confidence            699999995 579999999999999999999987655

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.79  E-value=7.2e-06  Score=77.51  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=33.4

Q ss_pred             HhcCCEEEeCceEEEEEEeCCeEEEEEcC-C--cEEEcCEEEEecCCC
Q 009027          216 ISLGGVIFEGYSVSSICTYENAAVLLLAE-G--KILSSHLIIDAMGNF  260 (546)
Q Consensus       216 ~~~G~~v~~~t~v~~i~~~~dgv~V~~~~-g--~~i~ArlVV~ADG~~  260 (546)
                      ++.|++|+.+++|++|..++++++|.+.+ +  ++++||.||-|.|..
T Consensus       230 ~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~  277 (347)
T d2ivda1         230 ASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  277 (347)
T ss_dssp             HHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHH
Confidence            33478999999999998888887776643 3  379999999998753

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=0.00018  Score=60.59  Aligned_cols=91  Identities=16%  Similarity=0.196  Sum_probs=66.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCc
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~  190 (546)
                      .++||||| +|+=+|..|++.|.+|.|+++.+..+                                       .     
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~---------------------------------------~-----   57 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR---------------------------------------G-----   57 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST---------------------------------------T-----
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc---------------------------------------c-----
Confidence            49999975 69999999999999999998653100                                       0     


Q ss_pred             cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCC----eEEEEEcC---Cc--EEEcCEEEEecC
Q 009027          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAE---GK--ILSSHLIIDAMG  258 (546)
Q Consensus       191 ~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~d----gv~V~~~~---g~--~i~ArlVV~ADG  258 (546)
                                 +| ..+-+.+.+.+++.|++++.++.++++...++    .+.+++.+   ++  .+.++.|+-|-|
T Consensus        58 -----------~D-~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          58 -----------FD-QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             -----------SC-HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             -----------CC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence                       01 13456777788889999999999999976443    34555543   22  466899998876

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=6.4e-06  Score=76.63  Aligned_cols=128  Identities=19%  Similarity=0.277  Sum_probs=70.7

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccc
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~--rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f  186 (546)
                      ++++|||||| +|+.+|..|.++|.  +|++|++.+.+...|. .+|..         ++............+.    .+
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~-~Ls~~---------~~~~~~~~~~~~~~~~----~~   69 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP-PLSKE---------LWFSDDPNVTKTLRFK----QW   69 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG-GGGTG---------GGCC--CTHHHHCEEE----CT
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCcccc-cccee---------cccccCchhhhhhhhh----hc
Confidence            7999999975 69999999987765  6999998765543332 12110         0000000000000000    00


Q ss_pred             cCCc-cccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          187 EGKG-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       187 ~~~~-~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                      .+.. .+.... ..+.+...     ....+.+.|++++.+++|++++.++.  +|++++|+++.++.||-|.|.
T Consensus        70 ~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          70 NGKERSIYFQP-PSFYVSAQ-----DLPHIENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             TSCEEESBSSC-GGGSBCTT-----TTTTSTTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCE
T ss_pred             ccchhhhhcCC-hhhhhhhh-----hHHHHHHCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeee
Confidence            0000 000000 00001100     01233467899999999999865554  567889999999999999994

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.1e-05  Score=78.79  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=32.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +||||||||| +|+++|..|+++|++|+|+|+...++
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            4899999965 69999999999999999999988765

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.65  E-value=1e-05  Score=75.03  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=32.5

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+|||||||| ++|+.+|..+++.|.+|+|||+....+
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG   41 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGG   41 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            3799999996 579999999999999999999987654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.62  E-value=1.6e-05  Score=79.35  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      +|||||||+| .|+.+|..|+++|++|+|||+.
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            7999999965 6888999999999999999986

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.59  E-value=2.1e-05  Score=75.64  Aligned_cols=44  Identities=9%  Similarity=0.134  Sum_probs=36.5

Q ss_pred             HHhcCCEEEeCceEEEEEEeCCeEEEEEc----CCcEEEcCEEEEecC
Q 009027          215 FISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMG  258 (546)
Q Consensus       215 a~~~G~~v~~~t~v~~i~~~~dgv~V~~~----~g~~i~ArlVV~ADG  258 (546)
                      +++.|++++.+++|++|..++++++|.+.    ++++++||.||.|.+
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p  292 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT  292 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSC
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCC
Confidence            34568899999999999999999888763    245899999999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.58  E-value=2.4e-05  Score=73.60  Aligned_cols=34  Identities=32%  Similarity=0.448  Sum_probs=29.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .||||||| +|+++|..|+++|++|+|+|+++.++
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G   37 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   37 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            49999965 79999999999999999999987654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.56  E-value=2.3e-05  Score=78.58  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=30.1

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      +||+||||+| +|+.+|..||+.|.+|+|||+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            6999999965 68889999999999999999984

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.48  E-value=3.2e-05  Score=72.45  Aligned_cols=37  Identities=22%  Similarity=0.335  Sum_probs=30.8

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~-rVlLlEr~~~~~  145 (546)
                      .+|||||||| |+|+++|..+|+.|. +|+|+|+.....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            4799999995 578899999999986 599999877543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.43  E-value=8.1e-05  Score=70.81  Aligned_cols=37  Identities=35%  Similarity=0.460  Sum_probs=32.4

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .+||||||||| +|+.+|..+++.|.+|+|||+.+..+
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG   78 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG   78 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence            47999999965 68889999999999999999987654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.43  E-value=7.1e-05  Score=69.26  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             CcccEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          109 GTFDVIVCGG-TLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       109 ~~yDVIIVGG-g~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      .+|||||||| |+|+++|..+|+.|. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            4799999995 679999999999987 5889987654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.42  E-value=4.2e-05  Score=76.11  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -.||||||+| .|+.+|..||++|+||+|||+..
T Consensus         2 ~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           2 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            3699999965 68889999999999999999963

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.30  E-value=7e-05  Score=75.86  Aligned_cols=34  Identities=29%  Similarity=0.605  Sum_probs=30.3

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL  143 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G-~rVlLlEr~~~  143 (546)
                      .||+|||||| +|+.+|..|++.| ++|+|||+.+.
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            6999999965 6999999999988 89999999864

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.29  E-value=6.3e-05  Score=75.91  Aligned_cols=35  Identities=29%  Similarity=0.474  Sum_probs=30.3

Q ss_pred             CcccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 009027          109 GTFDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL  143 (546)
Q Consensus       109 ~~yDVIIVGGg-~G~~~Aa~LA~~G-~rVlLlEr~~~  143 (546)
                      .+||+|||||| +|+.+|..|++.| ++|+|||+.+.
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            36999999976 6999999999875 89999999863

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=7.3e-05  Score=73.03  Aligned_cols=43  Identities=12%  Similarity=0.109  Sum_probs=35.6

Q ss_pred             ccCCcEEEeCCCCCCCCCCCCCc--chhhHhhHHHHHHHHHHHHh
Q 009027          385 AAFNRILQFGDASGIQSPVSFGG--FGSLTRHLGRLSTGVYEAVR  427 (546)
Q Consensus       385 ~~~~rvlLVGDAA~~v~Plsg~G--~g~~lrd~~~Lae~I~~Al~  427 (546)
                      ...++++++|||+..++++...|  +|.|+.+..+.|+.|.+.|+
T Consensus       266 ~~~pgl~~~Gdaa~~v~g~~r~G~t~g~m~~sG~~aA~~i~~~l~  310 (311)
T d2gjca1         266 AGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  310 (311)
T ss_dssp             TTSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EccCCEEEEeeecCcccCcCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            34588999999999888876666  88888888889999888775

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.21  E-value=5.9e-05  Score=75.26  Aligned_cols=34  Identities=35%  Similarity=0.622  Sum_probs=30.1

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      .||+|||||| +|+.+|..||++ +||+|||+...+
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~   60 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP   60 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence            6999999965 689999999987 999999999754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.18  E-value=0.00098  Score=60.08  Aligned_cols=106  Identities=15%  Similarity=0.122  Sum_probs=67.2

Q ss_pred             EEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCC
Q 009027          113 VIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~--G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~  189 (546)
                      |+||||| +|+.+|..|++.  +.+|.++||...+....+      .+..+              +...     +     
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~------~~~~~--------------l~~~-----~-----   52 (198)
T d1nhpa1           3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSA------GMQLY--------------LEGK-----V-----   52 (198)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGG------GHHHH--------------HTTS-----S-----
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccccccc------Ccchh--------------hccc-----c-----
Confidence            8999976 699999999876  668999998875542111      01111              0000     0     


Q ss_pred             ccccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEcCEEEEecCCC
Q 009027          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF  260 (546)
Q Consensus       190 ~~l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~-~~g~--~i~ArlVV~ADG~~  260 (546)
                         ..++.+..         ...+.+.+.|++++.+++|++++.+++.+++.. .+|+  ++.++.+|-|.|..
T Consensus        53 ---~~~~~~~~---------~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~  114 (198)
T d1nhpa1          53 ---KDVNSVRY---------MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAV  114 (198)
T ss_dssp             ---CCGGGSBS---------CCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             ---cchHHHHH---------hhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecce
Confidence               00000000         012334457999999999999988888877764 3443  68899999999953

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.13  E-value=0.00018  Score=64.53  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCe-EEEEcCCCCCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLR-VAIVERNTLKG  145 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~r-VlLlEr~~~~~  145 (546)
                      -|+|||| ++|+++|..|+++|++ |.|+||.+..+
T Consensus         6 kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           6 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVG   41 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             EEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence            4999995 5799999999999995 99999987544

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.13  E-value=0.00014  Score=71.27  Aligned_cols=34  Identities=26%  Similarity=0.499  Sum_probs=30.5

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      -|+||||| .|+++|..|+++|++|+|+|++..++
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            59999965 69999999999999999999998765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.03  E-value=0.00031  Score=65.43  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=31.8

Q ss_pred             cccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      .-+|+|||| ++|+++|..|+++|++|+|+|+....+
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            579999996 579999999999999999999987654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.00043  Score=64.40  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=27.4

Q ss_pred             ccEEEEcc-hHHHHHHHHHHhC---CCeEEEEcCCCCCC
Q 009027          111 FDVIVCGG-TLGIFIATALSFK---GLRVAIVERNTLKG  145 (546)
Q Consensus       111 yDVIIVGG-g~G~~~Aa~LA~~---G~rVlLlEr~~~~~  145 (546)
                      .+|||||| |+|+++|..+|+.   |++|+|+|+..+.+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG   40 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGG   40 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCc
Confidence            47999995 5688888777754   57899999977654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.94  E-value=0.00019  Score=66.26  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=31.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCC-------CeEEEEcCCCCCC
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKG-------LRVAIVERNTLKG  145 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G-------~rVlLlEr~~~~~  145 (546)
                      .+.|+||| ||+|+++|..|+++|       ++|.|+||.+.++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            37899999 567999999999988       5899999998766

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.90  E-value=0.00046  Score=60.26  Aligned_cols=100  Identities=19%  Similarity=0.226  Sum_probs=59.1

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCCcccchhhhhhccCCCcccccCCcc
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE  191 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl~~~~~ie~~i~~~~~~~~v~f~~~~~  191 (546)
                      |+||||| +|+-+|..|++ +.+|.|+|+.+.+...+..         +           ..... ...+       ...
T Consensus         3 VvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~---------~-----------~~~~~-~~~~-------~~~   53 (167)
T d1xhca1           3 VVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPM---------L-----------SHYIA-GFIP-------RNR   53 (167)
T ss_dssp             EEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTT---------H-----------HHHHT-TSSC-------GGG
T ss_pred             EEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccc---------h-----------hhhhh-hhhh-------hhh
Confidence            8999975 69999988865 7899999988765432110         0           00000 0000       000


Q ss_pred             ccccccccceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCC
Q 009027          192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (546)
Q Consensus       192 l~~~~~l~~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~  259 (546)
                      +. ..      .        .+...+.+++++.+++++.++.  +..++ ..++.++.++.+|-|.|.
T Consensus        54 ~~-~~------~--------~~~~~~~~v~~~~~~~v~~i~~--~~~~~-~~~~~~i~~D~li~a~G~  103 (167)
T d1xhca1          54 LF-PY------S--------LDWYRKRGIEIRLAEEAKLIDR--GRKVV-ITEKGEVPYDTLVLATGA  103 (167)
T ss_dssp             GC-SS------C--------HHHHHHHTEEEECSCCEEEEET--TTTEE-EESSCEEECSEEEECCCE
T ss_pred             hh-HH------H--------HHHHHhccceeeeecccccccc--ccccc-cccccccccceeEEEEEe
Confidence            00 00      0        1122345789999999987742  22233 346678999999999884

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.60  E-value=0.00072  Score=62.31  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             cEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCC
Q 009027          112 DVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKG  145 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~--G~rVlLlEr~~~~~  145 (546)
                      -|+|||| ++|+++|..|+++  |++|+|+|+.+.++
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g   39 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   39 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            5999995 6799999999765  88999999998765

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.30  E-value=0.0065  Score=53.56  Aligned_cols=39  Identities=21%  Similarity=0.203  Sum_probs=31.3

Q ss_pred             cCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       218 ~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                      .+++++.+++++++..+  ...+.+++|+++.+++||-|.|
T Consensus        68 ~~i~~~~~~~v~~i~~~--~~~~~~~~g~~~~~D~vi~a~G  106 (183)
T d1d7ya1          68 PEVEWLLGVTAQSFDPQ--AHTVALSDGRTLPYGTLVLATG  106 (183)
T ss_dssp             TTCEEEETCCEEEEETT--TTEEEETTSCEEECSEEEECCC
T ss_pred             CCeEEEEeccccccccc--cceeEecCCcEeeeeeEEEEEE
Confidence            46889999999886543  3456678899999999999988

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.08  E-value=0.00037  Score=64.10  Aligned_cols=51  Identities=22%  Similarity=0.240  Sum_probs=38.1

Q ss_pred             ceeCHHHHHHHHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecCCChH
Q 009027          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (546)
Q Consensus       200 ~~V~~~~L~~~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG~~S~  262 (546)
                      ..+|+..+..+|.+++.+.|++++.. +|+++.           +-....+++||.|.|..|.
T Consensus       137 ~~id~~~~~~~L~~~~~~~G~~~~~~-~v~~l~-----------~~~~~~~d~vVnctG~~a~  187 (246)
T d1kifa1         137 LILEGRKYLQWLTERLTERGVKFFLR-KVESFE-----------EVARGGADVIINCTGVWAG  187 (246)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEEC-CCCCHH-----------HHHHTTCSEEEECCGGGHH
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEEe-EeCCHH-----------HhccCCCCEEEECCccccc
Confidence            45899999999999999999988654 343321           1113457899999999884

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.63  E-value=0.0058  Score=62.90  Aligned_cols=37  Identities=43%  Similarity=0.517  Sum_probs=33.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~~  146 (546)
                      +|||||+| |-.=+.+|++|++.|.||+-|||+..-+.
T Consensus         6 e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg   43 (491)
T d1vg0a1           6 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG   43 (491)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             ccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCC
Confidence            79999999 55699999999999999999999997653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.014  Score=50.38  Aligned_cols=48  Identities=17%  Similarity=0.310  Sum_probs=37.5

Q ss_pred             HHHHHHHhcCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEcCEEEEecCC
Q 009027          210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGN  259 (546)
Q Consensus       210 ~L~~~a~~~G~~v~~~t~v~~i~~~~dgv~V~~~~g-~~i~ArlVV~ADG~  259 (546)
                      .....++..|++++.++++..+  +++++.+...+. +++.||.||-|.|.
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i--~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKI--DDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEE--ETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             HHHHHHhhCCeEEEeeeEEEEE--cCCCCEEecCCeEEEEECCEEEECCCC
Confidence            3455667789999999999876  578888776433 36999999999984

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.90  E-value=0.014  Score=50.09  Aligned_cols=55  Identities=18%  Similarity=0.065  Sum_probs=36.2

Q ss_pred             ccEEEE--cch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCC
Q 009027          111 FDVIVC--GGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGI  165 (546)
Q Consensus       111 yDVIIV--GGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl  165 (546)
                      -.|+|+  ||+ .|+-+|..|+++|.+|.|+|+.+.+...-.-.......+.|.+.|+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV   97 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHV   97 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTC
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchhHHHHHHHHHhhccc
Confidence            356666  666 7999999999999999999988754321111222333445555553

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.58  E-value=0.013  Score=51.37  Aligned_cols=30  Identities=27%  Similarity=0.197  Sum_probs=27.2

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      +.|+|+| .|+.+|+.|+++|++|.++||.+
T Consensus         4 iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7899965 79999999999999999999864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.50  E-value=0.012  Score=50.62  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=27.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G--~rVlLlEr~~~  143 (546)
                      -||||||| +|+.+|..|.+.|  .+|+|||+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            48999975 6999999999877  58999998763

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.02  Score=49.27  Aligned_cols=31  Identities=32%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|+|+| +|+++|..|++.|++|.+++|.+.
T Consensus         3 I~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            7899955 799999999999999999998764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.88  E-value=0.018  Score=50.09  Aligned_cols=35  Identities=20%  Similarity=0.170  Sum_probs=29.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      =||+||||| +|+-+|..|++.|.+|.|+++.+.+.
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~   39 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   39 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccc
Confidence            379999965 69999999999999999888776543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.86  E-value=0.021  Score=49.42  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=28.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      -|+|+|+| +|..+|..|+++|++|.|+||...
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            38999954 799999999999999999998853

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.041  Score=48.73  Aligned_cols=38  Identities=26%  Similarity=0.393  Sum_probs=33.7

Q ss_pred             CCcccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       108 ~~~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      +.+|||||||+| .|+++|+.||++|+||+||||+..++
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            458999999976 59999999999999999999998664

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.033  Score=43.66  Aligned_cols=34  Identities=15%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      -|+|+| |..|.++|..|+++|.+|.+.|.+..+.
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~   41 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCT
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCch
Confidence            499999 6789999999999999999999876543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.14  E-value=0.036  Score=46.21  Aligned_cols=30  Identities=27%  Similarity=0.513  Sum_probs=27.5

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|+|+ ..|..+|..|.++|++|+++|+.+
T Consensus         3 IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            899995 589999999999999999999875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.99  E-value=0.035  Score=49.39  Aligned_cols=31  Identities=26%  Similarity=0.245  Sum_probs=27.7

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|.|||+| +|...|+.++++|++|.++|+.+
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            49999976 69999999999999999999764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.053  Score=48.45  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=27.8

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|.|+|+| +|...|..+|++|++|.++|+.+
T Consensus         6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            48999965 79999999999999999999775

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.69  E-value=0.06  Score=46.46  Aligned_cols=30  Identities=30%  Similarity=0.414  Sum_probs=26.6

Q ss_pred             EEEEc--chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCG--GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVG--Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |.|+|  |+.|.++|..|+++|++|+|..|++
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            67885  4689999999999999999999875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.35  E-value=1.5  Score=35.69  Aligned_cols=32  Identities=28%  Similarity=0.243  Sum_probs=27.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -+|+||||| .++=.|..|++.+-+|.++-|..
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            489999987 57778889999999999997664

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.28  E-value=0.075  Score=47.63  Aligned_cols=30  Identities=27%  Similarity=0.328  Sum_probs=27.0

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |.|+|.| +|+.+|+.||++|++|..+|..+
T Consensus         3 I~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            7899965 89999999999999999999653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.84  E-value=0.077  Score=43.89  Aligned_cols=31  Identities=29%  Similarity=0.250  Sum_probs=27.6

Q ss_pred             cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .+||||. -.|..+|..|.+.|++|+++|+.+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            3789995 589999999999999999999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=90.21  E-value=0.07  Score=47.51  Aligned_cols=32  Identities=28%  Similarity=0.266  Sum_probs=28.3

Q ss_pred             ccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGGTL-GIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGGg~-G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ..|.|+|+|. |.++|..|++.|++|.+..|.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            4699999775 9999999999999999998763

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.70  E-value=0.3  Score=41.67  Aligned_cols=34  Identities=32%  Similarity=0.246  Sum_probs=28.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKG  145 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~r-VlLlEr~~~~~  145 (546)
                      .|+||||| .|+=+|..+.+.|.+ |.++.|.....
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~   82 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVN   82 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhh
Confidence            59999987 688899999999875 78998876543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=88.99  E-value=0.21  Score=43.48  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=29.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       110 ~yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      +-+|-||| |-+|..+|..|+++|++|.+.||.+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            35799999 7789999999999999999999875

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.89  E-value=0.15  Score=46.52  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  |+|.++|..|+++|++|++++|...
T Consensus         5 VlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           5 VIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            789995  7999999999999999999998764

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.58  E-value=0.19  Score=46.00  Aligned_cols=31  Identities=13%  Similarity=0.293  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |||.||  |+|.++|..|++.|.+|++++++..
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            567784  7999999999999999999998753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.42  E-value=0.22  Score=42.56  Aligned_cols=30  Identities=27%  Similarity=0.270  Sum_probs=26.6

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |.|||. -+|.+.|..|+++|++|.++||.+
T Consensus         3 I~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            789995 579999999999999999999864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.2  Score=45.89  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=27.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..||++|++|++++|..
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            678884  799999999999999999999875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.97  E-value=0.22  Score=46.39  Aligned_cols=30  Identities=33%  Similarity=0.449  Sum_probs=27.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|+++|.+|++++|..
T Consensus        17 alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          17 VIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            888895  799999999999999999999864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.87  E-value=3.3  Score=33.45  Aligned_cols=32  Identities=28%  Similarity=0.199  Sum_probs=27.2

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -+|+||||| .++=.|..|++..-+|.|+-|.+
T Consensus        31 k~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          31 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             ceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            489999987 57778889999989999998765

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.52  E-value=0.19  Score=45.38  Aligned_cols=32  Identities=34%  Similarity=0.495  Sum_probs=28.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      ++|.||  |+|..+|..|+++|.+|++.+++...
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            677785  79999999999999999999987654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.33  E-value=0.19  Score=44.01  Aligned_cols=30  Identities=23%  Similarity=0.249  Sum_probs=26.3

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      .|.|+|+| .|.++|..|+++|++|.+..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            38899976 5999999999999999999764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=87.23  E-value=0.27  Score=41.35  Aligned_cols=32  Identities=28%  Similarity=0.589  Sum_probs=28.4

Q ss_pred             ccEEEEcc-h-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGG-T-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGG-g-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      --|.|||| | +|..+|..|.++|+.|.++|+.+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            35999994 6 69999999999999999999865

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=87.08  E-value=0.24  Score=42.43  Aligned_cols=31  Identities=29%  Similarity=0.413  Sum_probs=26.0

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+|+| |++|++++..+...|.+|+++|+++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            488889 6789998877778899999999764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.99  E-value=0.13  Score=47.55  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=25.0

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      |+|.| ||+|-+     +|+.||++|+||+|||-.+..
T Consensus         4 Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~   41 (269)
T d1cp2a_           4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            67889 876554     566889999999999977643

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=0.23  Score=37.55  Aligned_cols=31  Identities=29%  Similarity=0.225  Sum_probs=27.7

Q ss_pred             EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |.|+||| +|-+++.+..+.|++|.++|..+.
T Consensus         4 vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           4 VCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             EEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            7899987 899999999999999999996653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.85  E-value=0.3  Score=39.41  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=29.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      +-|.|+||| +|-++|.+..+.|++|.++|..+.
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            469999987 899999999999999999998764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.81  E-value=0.26  Score=44.83  Aligned_cols=32  Identities=28%  Similarity=0.355  Sum_probs=28.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      |+|.||  |+|..+|..|+++|++|.++|+....
T Consensus         5 vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           5 VLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            789994  79999999999999999999976543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.62  E-value=0.15  Score=47.83  Aligned_cols=31  Identities=29%  Similarity=0.416  Sum_probs=24.7

Q ss_pred             EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVG-Gg~G~~-----~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.| ||+|-+     +|++||++|.||+|||-.+.
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            66778 887665     47778999999999997654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.54  E-value=0.3  Score=42.98  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=27.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -|+|.||  |+|..+|..|+++|.+|.+++|+.
T Consensus        25 ~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            4888884  789999999999999999999885

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.19  E-value=0.26  Score=45.62  Aligned_cols=31  Identities=32%  Similarity=0.603  Sum_probs=27.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      |+|.||  |+|..+|..|+++|.+|++.+|...
T Consensus        12 alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_          12 IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            778885  7999999999999999999998753

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=0.31  Score=44.70  Aligned_cols=30  Identities=37%  Similarity=0.468  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|++.|.+|++.+|+.
T Consensus        10 ~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_          10 VLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            778894  799999999999999999999864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.00  E-value=0.31  Score=45.27  Aligned_cols=30  Identities=27%  Similarity=0.395  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++++|..
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           9 AIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            777785  799999999999999999999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.99  E-value=0.31  Score=44.91  Aligned_cols=30  Identities=40%  Similarity=0.567  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|++.|.+|++.+|..
T Consensus         8 ~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           8 ALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            778884  799999999999999999999864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.92  E-value=0.32  Score=44.73  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=26.3

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|+++|.+|++.+|+.
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            666685  789999999999999999999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.81  E-value=0.32  Score=44.80  Aligned_cols=30  Identities=40%  Similarity=0.589  Sum_probs=26.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|+++|.+|++.+|+.
T Consensus         6 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677784  799999999999999999999864

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=85.64  E-value=0.33  Score=44.92  Aligned_cols=30  Identities=30%  Similarity=0.582  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|++.|.+|++.+|..
T Consensus         7 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           7 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677795  799999999999999999999874

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.48  E-value=0.33  Score=45.47  Aligned_cols=30  Identities=33%  Similarity=0.457  Sum_probs=27.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|+++|.+|++++|+.
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            788884  799999999999999999999874

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.38  E-value=0.35  Score=44.59  Aligned_cols=30  Identities=37%  Similarity=0.491  Sum_probs=26.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|++.|.+|++.+|+.
T Consensus         4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467784  799999999999999999999864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.26  E-value=0.4  Score=41.32  Aligned_cols=32  Identities=19%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      -.|+|+| ||++-+++.+|++.|.+|.|+.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4699999 7899999999999999999998764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.18  E-value=0.37  Score=44.15  Aligned_cols=30  Identities=30%  Similarity=0.420  Sum_probs=26.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|+++|.+|++.+|..
T Consensus         8 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           8 ALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            778884  799999999999999999999763

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.07  E-value=0.26  Score=45.63  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=25.2

Q ss_pred             ccEEEE-c-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 009027          111 FDVIVC-G-GTLGIFI-----ATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       111 yDVIIV-G-Gg~G~~~-----Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      +-|||+ | ||+|-++     |..||++|.||++||-.+.+
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~   60 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA   60 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            456666 6 7776653     67888999999999987643

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.05  E-value=0.31  Score=45.07  Aligned_cols=30  Identities=30%  Similarity=0.444  Sum_probs=26.4

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|+++|.+|++.+|..
T Consensus         7 alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            566684  799999999999999999999874

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.99  E-value=0.29  Score=45.11  Aligned_cols=30  Identities=27%  Similarity=0.310  Sum_probs=26.3

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|+++|.+|++.+|+.
T Consensus        13 alITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            667685  799999999999999999999864

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.94  E-value=0.33  Score=44.39  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=28.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 009027          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~~  143 (546)
                      .-|+|+| ||+|+.+|..|++.|+ +..|+|....
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            4599999 7899999999999999 6778886543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.94  E-value=0.38  Score=44.46  Aligned_cols=30  Identities=33%  Similarity=0.503  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|.++|..|+++|++|.+.+|..
T Consensus        13 ~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          13 ALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            888895  789999999999999999999864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=84.93  E-value=0.39  Score=44.10  Aligned_cols=30  Identities=27%  Similarity=0.510  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|++.|.+|++.++.+
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           8 AVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            677785  799999999999999999999865

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.87  E-value=0.38  Score=44.50  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=26.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|++.|.+|++.+|..
T Consensus         8 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           8 CLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677785  799999999999999999999864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.86  E-value=0.33  Score=44.88  Aligned_cols=30  Identities=33%  Similarity=0.463  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|+++|.+|++.+|+.
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           8 ALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788895  799999999999999999999864

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.82  E-value=0.4  Score=43.59  Aligned_cols=30  Identities=37%  Similarity=0.504  Sum_probs=27.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|++.|++|++.+|+.
T Consensus         7 ~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           7 VLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788894  799999999999999999999874

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=84.72  E-value=0.38  Score=44.88  Aligned_cols=30  Identities=27%  Similarity=0.608  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|++.|.+|++++|+.
T Consensus         8 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           8 VLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            778895  799999999999999999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.57  E-value=0.38  Score=41.27  Aligned_cols=31  Identities=26%  Similarity=0.588  Sum_probs=25.2

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      .|+|+| ||+|++++..+...|. +|.++|+++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            488999 5678888877778898 799999764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.48  E-value=0.32  Score=45.07  Aligned_cols=30  Identities=27%  Similarity=0.454  Sum_probs=26.5

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|+++|.+|++.+|+.
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           8 AIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            667784  799999999999999999999874

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.47  E-value=0.39  Score=45.42  Aligned_cols=30  Identities=37%  Similarity=0.457  Sum_probs=27.0

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|++.|.+|++.+|+.
T Consensus        15 alITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          15 AIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788885  799999999999999999999874

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=84.42  E-value=0.42  Score=43.92  Aligned_cols=30  Identities=37%  Similarity=0.540  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|++.|.+|++.+|..
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           8 VLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677784  799999999999999999999875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.35  E-value=0.42  Score=43.72  Aligned_cols=30  Identities=17%  Similarity=0.331  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|++.|.+|++.+|+.
T Consensus         8 ~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           8 VLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            777785  799999999999999999999864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.33  E-value=0.36  Score=41.14  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=27.1

Q ss_pred             EEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |-||| |-+|..+|..|+++|++|.+.||.+
T Consensus         3 IgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            77999 6789999999999999999998764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=84.31  E-value=0.42  Score=44.18  Aligned_cols=30  Identities=33%  Similarity=0.447  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|++.|.+|++.+|+.
T Consensus        11 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_          11 ALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            778885  799999999999999999999864

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.17  E-value=0.36  Score=44.27  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=26.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|+++|++|++.+|++
T Consensus         9 alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           9 IILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            677784  799999999999999999999864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.05  E-value=0.44  Score=43.89  Aligned_cols=30  Identities=37%  Similarity=0.604  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|++.|.+|++.+|+.
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           9 VVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            778884  799999999999999999999864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=83.92  E-value=0.45  Score=43.98  Aligned_cols=30  Identities=33%  Similarity=0.429  Sum_probs=26.9

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|+++|.+|++.+|..
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           8 VIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            788885  799999999999999999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.84  E-value=0.43  Score=40.59  Aligned_cols=31  Identities=29%  Similarity=0.378  Sum_probs=25.2

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|+|+| |++|++++..+...|.+|.++|+++
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            488899 5789887777777899999998764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.75  E-value=0.36  Score=44.97  Aligned_cols=30  Identities=30%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|+++|.+|++.+|+.
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           8 VIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677784  799999999999999999999874

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.70  E-value=0.38  Score=44.36  Aligned_cols=30  Identities=30%  Similarity=0.480  Sum_probs=26.4

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|+++|.+|++.+|..
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           9 ALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            667785  799999999999999999999764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=83.55  E-value=0.47  Score=43.65  Aligned_cols=30  Identities=37%  Similarity=0.584  Sum_probs=26.1

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|-||  |+|.++|..||+.|.+|++.+|..
T Consensus         5 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           5 ALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            366685  799999999999999999999864

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.54  E-value=0.48  Score=43.49  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=26.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|+++|.+|++.+|.+
T Consensus         9 alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           9 ALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677784  799999999999999999999864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=83.35  E-value=0.39  Score=44.23  Aligned_cols=30  Identities=37%  Similarity=0.633  Sum_probs=26.4

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|++.|.+|++.+|+.
T Consensus         9 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           9 AIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677784  799999999999999999999864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.23  E-value=0.39  Score=44.45  Aligned_cols=30  Identities=30%  Similarity=0.426  Sum_probs=26.8

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|++.|.+|++.+|+.
T Consensus        11 alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_          11 VLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            777784  799999999999999999999874

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.19  E-value=0.41  Score=43.69  Aligned_cols=32  Identities=38%  Similarity=0.612  Sum_probs=28.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      ++|.||  |+|..+|..|++.|.+|.+.+|....
T Consensus        10 ~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1          10 VLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            778885  79999999999999999999987643

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.17  E-value=0.39  Score=44.78  Aligned_cols=30  Identities=33%  Similarity=0.494  Sum_probs=26.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|++.|.+|++.+|..
T Consensus         7 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           7 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677784  799999999999999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.04  E-value=0.46  Score=40.67  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=24.7

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      -|+|+| |++|++++..+...|.+|.++|+++.
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            388899 56788866655567999999998753

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.96  E-value=0.48  Score=37.83  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=27.4

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      --|+||||| +|..-|..|.+.|.+|+|++...
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            359999975 79999999999999999997543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=82.94  E-value=0.41  Score=43.17  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=30.4

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG  145 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~~  145 (546)
                      ||+||||| +|+++|+.|+++|++|+|+|+++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            79999965 69999999999999999999987653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=82.88  E-value=0.43  Score=43.67  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=26.3

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|++.|++|++.+|+.
T Consensus         7 alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           7 ALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            566684  799999999999999999999864

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=82.80  E-value=0.6  Score=39.17  Aligned_cols=30  Identities=30%  Similarity=0.492  Sum_probs=27.2

Q ss_pred             EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG-g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      +||||. ..|..++..|.+.|.+|+++|..+
T Consensus         6 iII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           6 FIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            999994 689999999999999999999765

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.79  E-value=0.43  Score=44.26  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=26.6

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|+++|.+|++.+|..
T Consensus        10 alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_          10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            677784  799999999999999999999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=82.48  E-value=0.55  Score=43.32  Aligned_cols=30  Identities=37%  Similarity=0.505  Sum_probs=27.3

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|++.+|+.
T Consensus         9 alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           9 ALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            888894  799999999999999999999874

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.26  E-value=0.43  Score=44.06  Aligned_cols=30  Identities=27%  Similarity=0.429  Sum_probs=26.4

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|.++|..|++.|.+|++.+|+.
T Consensus        14 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          14 AIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             EEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            667784  799999999999999999999864

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.21  E-value=0.46  Score=43.36  Aligned_cols=30  Identities=33%  Similarity=0.604  Sum_probs=26.2

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      +||-||  |+|.++|..|+++|.+|++.+|..
T Consensus         4 AlVTGas~GIG~aia~~la~~G~~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            466684  799999999999999999999875

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=82.15  E-value=0.52  Score=43.43  Aligned_cols=30  Identities=17%  Similarity=0.266  Sum_probs=26.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |+|.||  |+|..+|..|+++|.+|+++.|..
T Consensus         8 vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             EEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            788895  799999999999999999997664

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=81.80  E-value=0.61  Score=42.50  Aligned_cols=30  Identities=20%  Similarity=0.393  Sum_probs=26.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.||  |+|..+|..|+++|++|.+.+|+.
T Consensus         8 alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           8 ILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            678785  789999999999999999999764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=81.74  E-value=0.31  Score=42.72  Aligned_cols=41  Identities=7%  Similarity=0.053  Sum_probs=34.0

Q ss_pred             cCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEcCEEEEecC
Q 009027          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (546)
Q Consensus       218 ~G~~v~~~t~v~~i~~~~dgv~V~~~~g~~i~ArlVV~ADG  258 (546)
                      .+..+..++.+..+...++.+.|++.+|+.+.++.+|.+..
T Consensus       223 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~  263 (347)
T d1b5qa1         223 VDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSAS  263 (347)
T ss_dssp             CCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSC
T ss_pred             cccccccccccccccccCccEEEEECCCCEEEcCEEEeecC
Confidence            35688889999999998889999998888888888886543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.42  E-value=0.63  Score=39.59  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=27.1

Q ss_pred             EEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      |-||| |-+|...|..|+++|+.|.+.||.+
T Consensus         4 Ig~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           4 IAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            88999 6689999999999999999999764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.41  E-value=0.42  Score=40.21  Aligned_cols=30  Identities=20%  Similarity=0.427  Sum_probs=26.0

Q ss_pred             cEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 009027          112 DVIVCGGT-LGIFIATALSFKGLRVAIVERN  141 (546)
Q Consensus       112 DVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~  141 (546)
                      -|+||||| +|..-|..|.+.|.+|.|+...
T Consensus        15 rvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          15 RILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            59999965 7999999999999999999644

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.16  E-value=0.52  Score=43.65  Aligned_cols=31  Identities=26%  Similarity=0.361  Sum_probs=26.9

Q ss_pred             cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      =|+|.||  |+|.++|..|+++|.+|++.+++.
T Consensus        20 ~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          20 VALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            3777784  789999999999999999999764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=81.03  E-value=0.6  Score=42.96  Aligned_cols=30  Identities=20%  Similarity=0.216  Sum_probs=26.8

Q ss_pred             EEEEc--c--hHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          113 VIVCG--G--TLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       113 VIIVG--G--g~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      ++|.|  |  |+|.++|..|+++|.+|++.+|+.
T Consensus         8 alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           8 GLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             EEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             EEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            78888  4  699999999999999999999874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=80.82  E-value=0.9  Score=41.65  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             cccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       110 ~yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      ..+|+||||| +|+++|..|+++|++|+|+|++..+
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~   65 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   65 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3589999965 6999999999999999999998754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.65  E-value=0.65  Score=39.95  Aligned_cols=31  Identities=39%  Similarity=0.613  Sum_probs=27.7

Q ss_pred             cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 009027          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (546)
Q Consensus       112 DVIIVG-Gg~G~~~Aa~LA~~G~rVlLlEr~~  142 (546)
                      .|-||| |-.|..+|..|+++|++|.+.||.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            478999 7789999999999999999998764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=80.62  E-value=0.8  Score=40.15  Aligned_cols=33  Identities=18%  Similarity=0.132  Sum_probs=26.6

Q ss_pred             ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 009027          111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL  143 (546)
Q Consensus       111 yDVIIVGGg-~G~~~Aa~LA~~G~rVlLlEr~~~  143 (546)
                      ..|+|+|+| +|..+|....+.|.+|.++|.+..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            579999977 566666666788999999997753

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.49  E-value=0.58  Score=44.35  Aligned_cols=32  Identities=28%  Similarity=0.270  Sum_probs=27.7

Q ss_pred             EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 009027          113 VIVCGG--TLGIFIATALSFKGLRVAIVERNTLK  144 (546)
Q Consensus       113 VIIVGG--g~G~~~Aa~LA~~G~rVlLlEr~~~~  144 (546)
                      ++|-||  |+|..+|..||++|.+|++.|+....
T Consensus        10 alITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~   43 (302)
T d1gz6a_          10 VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDF   43 (302)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCT
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence            677784  79999999999999999999987643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.38  E-value=1.9  Score=32.90  Aligned_cols=42  Identities=21%  Similarity=0.185  Sum_probs=32.2

Q ss_pred             EEEEc-chHHHH-HHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCC
Q 009027          113 VIVCG-GTLGIF-IATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGI  165 (546)
Q Consensus       113 VIIVG-Gg~G~~-~Aa~LA~~G~rVlLlEr~~~~~~~r~~~Is~~~l~~L~~lGl  165 (546)
                      |=++| ||+|++ +|..|.++|++|.--|+...           ...+.|+.+|+
T Consensus         4 ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~-----------~~t~~L~~~Gi   47 (89)
T d1j6ua1           4 IHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET-----------ERTAYLRKLGI   47 (89)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC-----------HHHHHHHHTTC
T ss_pred             EEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC-----------hhHHHHHHCCC
Confidence            55789 888886 57788899999999997631           23446888886

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.30  E-value=0.81  Score=39.55  Aligned_cols=30  Identities=23%  Similarity=0.437  Sum_probs=25.5

Q ss_pred             EEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 009027          113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (546)
Q Consensus       113 VIIVG-Gg~G~~~Aa~LA~~G~-rVlLlEr~~  142 (546)
                      |+|+| ||+|+++...+...|. +|.++|..+
T Consensus        33 VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          33 CVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            88999 6789988888888885 799999775