Citrus Sinensis ID: 009033

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540------
Protein Sequence
MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHAARAGKR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHcccEEEEccccEEcccccccHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccHccccEEccccEccccccHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHEEccccEEEEccHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEcccccccccHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpwsekrtLVERTIIEMGLQDCADTVignwhlrgisggeRRRVSIALEILmrprllfldeptsgldsAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLlsggktvyfgeTSAAFEFFaqagfpcpalrnpsdhflRCINSDFDKVKATLKgsmklkfetsddplekITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGtvldaggsQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMsiggfpsfVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSgyfrlpndipkpvwrypmsyLSFHYWALQGQYQndlkglwfdnqspdlpkipgeyvlENVFQIdvrrskwiDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMqqkngtqnttvapdrltqspslRNYVANHAARAGKR
Flexible Loop (DISEMBL)
MPWSEKRTLVERTIIEMGLQDCADTVIGnwhlrgisggerrRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAsihqpssevfELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLkgsmklkfetsddpleKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRmqqkngtqnttvapdrltqspslrnyVANHAARAGKR
Low Complexity Region (SEG)
MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHAARAGKR
Disordered region (IsUnstruct)
********LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKF******LEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSI********FVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLAR***************************************
Disordered Region (DISOPRED)
*PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFD********************************************************************SFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIR********************************************
Disordered Region (DISEMBL)
MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRM*********TVAPDRLTQSPSLRNYVA*********
Disordered Region (DISPRO)
MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQH********E************GGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRR*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHAARAGKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	546	2.2.26 [Sep-21-2011]
Q8RXN0	703	ABC transporter G family	yes	no	0.987	0.766	0.861	0.0
Q8RWI9	691	ABC transporter G family	no	no	0.935	0.739	0.563	1e-176
Q9C8K2	687	ABC transporter G family	no	no	0.928	0.737	0.575	1e-169
Q9C8J8	678	ABC transporter G family	no	no	0.972	0.783	0.489	1e-153
Q9ZUU9	730	ABC transporter G family	no	no	0.880	0.658	0.376	3e-93
Q9UNQ0	655	ATP-binding cassette sub-	yes	no	0.675	0.563	0.331	2e-50
Q5MB13	654	ATP-binding cassette sub-	yes	no	0.675	0.564	0.327	2e-50
Q11180	598	ABC transporter ATP-bindi	yes	no	0.855	0.780	0.300	4e-50
Q7TMS5	657	ATP-binding cassette sub-	yes	no	0.728	0.605	0.314	3e-49
Q9M2V7	736	ABC transporter G family	no	no	0.796	0.591	0.288	1e-48

>sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/540 (86%), Positives = 500/540 (92%), Gaps = 1/540 (0%)

Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           SEKR LVERTIIEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTS
Sbjct: 162 SEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTS 221

Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
           GLDSA+AFFVTQTLR LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+
Sbjct: 222 GLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAY 281

Query: 124 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIK 183
           EFFAQAGFPCPALRNPSDHFLRCINSDFDKV+ATLKGSMKL+FE SDDPLEKITTAEAI+
Sbjct: 282 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIR 341

Query: 184 NLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGY 243
            L+D+Y TS + Y AK KVE IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGY
Sbjct: 342 LLVDYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGY 401

Query: 244 YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 303
           YWLRL+IY++VT+CIGTIYLNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 402 YWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 461

Query: 304 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYA 363
           FQRERLNGHYGV AFVI NTLSA PFLIMITFISGTICYFMV LHPGF HYLFFVLCLYA
Sbjct: 462 FQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYA 521

Query: 364 SVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSF 423
           SV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG+FRLPNDIPKP WRYPMSY+SF
Sbjct: 522 SVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISF 581

Query: 424 HYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISY 483
           H+WALQGQYQNDL+GL FD+Q     KIPGEYVLENVFQID+ RSKWI+LSVI SMII Y
Sbjct: 582 HFWALQGQYQNDLRGLTFDSQGSAF-KIPGEYVLENVFQIDLHRSKWINLSVILSMIIIY 640

Query: 484 RIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHAARA 543
           RIIFF+MIK +EDVTPW+RG +ARRRM+QKNGTQNTTVAPD LTQSPSLRNY+A     A
Sbjct: 641 RIIFFIMIKTNEDVTPWVRGYIARRRMKQKNGTQNTTVAPDGLTQSPSLRNYIATRTDGA 700

Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2

 Score =  617 bits (1592), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 290/515 (56%), Positives = 393/515 (76%), Gaps = 4/515 (0%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M   E   +VE TI+E+GLQDC+D VIGNWH RG+SGGER+RVSIALEIL RP++LFLDE
Sbjct: 135 MSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDE 194

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLDSA+AFFV Q LR ++RDGRTVI+S+HQPSSEVF LFD L+LLS G++VYFGE  
Sbjct: 195 PTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAK 254

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPLEKITT 178
           +A EFFA++GFPCP  RNPSDHFLRCINSDFD V ATLKGS +++ ET  + DPL  + T
Sbjct: 255 SAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQ-ETPATSDPLMNLAT 313

Query: 179 AEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLD-AGGSQASFLMQAFTLTKRSFVNM 237
           +     L++ Y+ S+++ +AK ++  +S ++G  ++   GS+A++  Q  TLT RSF+NM
Sbjct: 314 SVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINM 373

Query: 238 SRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSF 297
            RD GYYW R++ Y+VV+I +GTI+ +VG  Y SILAR SC  F+ GF+TFMSIGGFPSF
Sbjct: 374 CRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSF 433

Query: 298 VEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFF 357
           +E+MKVF +ERL+G+YGV+ +++ N +S+ PFL+ I+ I+GTI Y +V+  PGF HY FF
Sbjct: 434 LEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFF 493

Query: 358 VLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYP 417
            L ++ SV+V+ESLMM +AS+VPNFLMG+ITGAG+ GI M+ SG+FRL  D+PK  WRYP
Sbjct: 494 CLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYP 553

Query: 418 MSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIF 477
           +SY+S+  WA+QG Y+ND  GL F+   P  PK+ GE V+E VF + V  SKW DL+ + 
Sbjct: 554 VSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAVV 613

Query: 478 SMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQ 512
           ++++ YR++FFV++K+ E   P ++   A+R M+ 
Sbjct: 614 AILVCYRLLFFVVLKLRERAGPALKAIQAKRTMRN 648

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1

 Score =  593 bits (1530), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 295/513 (57%), Positives = 388/513 (75%), Gaps = 6/513 (1%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           E   +VE TIIE+GLQDCAD VIGNWH RG+SGGER+RVS+ALEIL RP++LFLDEPTSG
Sbjct: 138 EVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSG 197

Query: 65  LDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
           LDSA+AFFV Q LR ++RDG RTV++SIHQPSSEVF LFD L+LLS G+TVYFGE+  A 
Sbjct: 198 LDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAV 257

Query: 124 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPLEKITTAEA 181
           EFFA+AGFPCP  RNPSDHFLRCINSDFD V ATLKGS +++ ET  + DPL  + T+E 
Sbjct: 258 EFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIR-ETPATSDPLMNLATSEI 316

Query: 182 IKNLIDFYQTSQHSYAAKEKVEGISKVKGT--VLDAGGSQASFLMQAFTLTKRSFVNMSR 239
              L++ Y+ S ++ +AK ++  ++ ++G   +    GS+A++  Q  TLTKRSFVNM R
Sbjct: 317 KARLVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCR 376

Query: 240 DFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVE 299
           D GYYW R+VIY+VV+ C+GTI+ +VG  Y SILAR SC  F+ GF+TFMSIGGFPSF+E
Sbjct: 377 DIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIE 436

Query: 300 DMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVL 359
           +MKVF +ERL+G+YGV+ ++I N +S+ PFL+ I  I+G+I Y MV+  PG  H+ FF L
Sbjct: 437 EMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCL 496

Query: 360 CLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMS 419
            ++ SV+V+ESLMM +AS+VPNFLMG+ITGAGI GI M+ SG+FRL  D+PK  WRYP+S
Sbjct: 497 NIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRYPIS 556

Query: 420 YLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSM 479
           ++S+  WA+QG Y+ND  GL FD      PK+ GE V+  +F + V  SKW DLS I  +
Sbjct: 557 FMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAIVLI 616

Query: 480 IISYRIIFFVMIKISEDVTPWIRGCLARRRMQQ 512
           ++ YRI+FF+++K+ E   P ++   A+R M+ 
Sbjct: 617 LVCYRILFFIVLKLKERAEPALKAIQAKRTMKS 649

Involved in the secretion of cuticular wax from epidermal cells to the cuticle.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1

 Score =  543 bits (1400), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 268/548 (48%), Positives = 379/548 (69%), Gaps = 17/548 (3%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           E   +VE TI +MGL++C+D  IGNWHLRGISGGE++R+SIALE+L +P LLFLDEPTSG
Sbjct: 124 EISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSG 183

Query: 65  LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
           LDSA+AFFV Q LR ++  G+TV++SIHQPS EVF LFD L LLSGG+TVYFGE  +A +
Sbjct: 184 LDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATK 243

Query: 125 FFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLK---------FETSD--DPL 173
           FF +AGFPCP+ RNPSDHFLRC+NSDFD V A L  S ++           ET++  DPL
Sbjct: 244 FFGEAGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPL 303

Query: 174 EKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLD-AGGSQASFLMQAFTLTKR 232
           + I TAE    L+  ++ S ++ A++ +++ I+ + G V +   GSQ ++  Q   LT+R
Sbjct: 304 DDIPTAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLRILTQR 363

Query: 233 SFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG 292
           SF+NMSRD GYYW+R+ +Y+V++IC+G+I+ NVG  + ++++  +C  F+ GF+TFMSIG
Sbjct: 364 SFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIG 423

Query: 293 GFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFI 352
           GF SF+E+MKVF RERLNGHYGV  + + N LS++PF+I++   + +I  +MVR   G  
Sbjct: 424 GFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGS 483

Query: 353 HYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKP 412
           H+ +  L L  ++  VES MM IAS+VPNFLMG++ GAG  GI +L +G+FR   D+P  
Sbjct: 484 HFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMV 543

Query: 413 VWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWID 472
            WRYP+SY+++  WALQG Y+N++ G+ +D+  P +PK+ GE +L+ V  I+   SKW+D
Sbjct: 544 FWRYPVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLD 603

Query: 473 LSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSL 532
           L+V+  ++I YRI FF ++K  E V P I     +R +       +      R+T  PS 
Sbjct: 604 LAVVMMILIGYRIAFFAILKFREKVFPVIHMLYTKRTLSHIQKRPSF----RRMTPFPS- 658

Query: 533 RNYVANHA 540
           R Y  +HA
Sbjct: 659 RRYPVHHA 666

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2

 Score =  342 bits (878), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 185/491 (37%), Positives = 302/491 (61%), Gaps = 10/491 (2%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           +KR++VE  I  M L D A+ +IG + +++G+  GERRRVSIA E++MRP +LF+DEP  
Sbjct: 225 QKRSVVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLY 284

Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
            LDS +A  +  TL+ L+  G T++ +I+Q S+EVF LFDR+ LLS G T++FGET A  
Sbjct: 285 HLDSVSALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACL 344

Query: 124 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIK 183
           + F+ AGFPCP +++PSDHFLR IN+DFD++ A  K     + +  D     + TA AI+
Sbjct: 345 QHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCK---NWQDDNGDFSAVNMDTAVAIR 401

Query: 184 NLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGY 243
            L   Y++S  + + +  +  +++ +GT L + G +A    +   LT RS + MSR++ Y
Sbjct: 402 TLEATYKSSADADSVEAMIIKLTEREGTQLKSKG-KAGAATRVAVLTWRSLLVMSREWKY 460

Query: 244 YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF-GFVTFMSIGGFPSFVEDMK 302
           YWLRL++Y+++T+ IGT+Y  +G   +S+  R   A FVF  F + + I G PS ++++K
Sbjct: 461 YWLRLILYMILTLSIGTLYSGLGHSLSSVATR-VAAVFVFVSFASLLGIAGIPSLLKEIK 519

Query: 303 VFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLY 362
           +++ E  N H G   F++G  L ++PFL +++  S  + YFMV L   F   ++FVL  +
Sbjct: 520 IYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFF 579

Query: 363 ASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLS 422
             + V E LM+ IA I  +     +T   +  I ML +G+FR+   +PKPVW YP +Y+S
Sbjct: 580 MCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYIS 639

Query: 423 FHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDV-RRSKWIDLSVIFSMII 481
           FH ++++G  +N+  G  F     ++  I G   ++  +QI     +KW ++ V+ +M  
Sbjct: 640 FHTYSIEGLLENEYLGEVF--AVGEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAF 697

Query: 482 SYRIIFFVMIK 492
            YR++ +V+++
Sbjct: 698 GYRLLVYVLLR 708

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3

 Score =  200 bits (509), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 195/386 (50%), Gaps = 17/386 (4%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M   EK   + R I E+GL   AD+ +G   +RG+SGGER+R SI +E++  P +LFLDE
Sbjct: 152 MTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDE 211

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PT+GLDS+ A  V   L+ +S+ GRT+I SIHQP   +F+LFD L LL+ G+ ++ G   
Sbjct: 212 PTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQ 271

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKV----KATLKGSMKLKFETSDDPLEKI 176
            A  +F  AG+ C A  NP+D FL  IN D   V    +   K +  ++    D PL   
Sbjct: 272 EALGYFESAGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSKQDKPL--- 328

Query: 177 TTAEAIKNLIDFYQTSQHSYAAKEKVEGIS----KVKGTVLDAGGSQASFLMQAFTLTKR 232
                I+ L + Y  S      K ++  +S    K K TV        SF  Q   ++KR
Sbjct: 329 -----IEKLAEIYVNSSFYKETKAELHQLSGGEKKKKITVFKEISYTTSFCHQLRWVSKR 383

Query: 233 SFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG 292
           SF N+  +      ++++ VV+ + IG IY  +      I  R     F+     F S+ 
Sbjct: 384 SFKNLLGNPQASIAQIIVTVVLGLVIGAIYFGLKNDSTGIQNRAGVLFFLTTNQCFSSVS 443

Query: 293 GFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLS-AMPFLIMITFISGTICYFMVRLHPGF 351
               FV + K+F  E ++G+Y V+++ +G  LS  +P  ++ + I   I YFM+ L P  
Sbjct: 444 AVELFVVEKKLFIHEYISGYYRVSSYFLGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPKA 503

Query: 352 IHYLFFVLCLYASVAVVESLMMAIAS 377
             +   +  L        S+ +AIA+
Sbjct: 504 DAFFVMMFTLMMVAYSASSMALAIAA 529

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123.

Homo sapiens (taxid: 9606)

>sp|Q5MB13|ABCG2_MACMU ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 195/385 (50%), Gaps = 16/385 (4%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M   EK   + R I E+GL   AD+ +G   +RG+SGGER+R SI +E++  P +LFLDE
Sbjct: 152 MTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDE 211

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PT+GLDS+ A  V   L+ +S+ GRT+I SIHQP   +F+LFD L LL+ G+ ++ G   
Sbjct: 212 PTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQ 271

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKV----KATLKGSMKLKFETSDDPLEKI 176
            A  +F  AG+ C A  NP+D FL  IN D   V    +   K +  ++    D PL   
Sbjct: 272 EALGYFESAGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSKRDKPL--- 328

Query: 177 TTAEAIKNLIDFYQTS---QHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRS 233
                ++ L + Y  S   + + A   ++ G  K K TV        SF  Q   ++KRS
Sbjct: 329 -----VEKLAEIYVDSSFYKETKAELHQLSGGEKKKITVFKEISYTTSFCHQLRWVSKRS 383

Query: 234 FVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGG 293
           F N+  +      ++++ V++ + IG IY  +      I  R     F+     F S+  
Sbjct: 384 FKNLLGNPQASIAQIIVTVILGLVIGAIYFGLNNDSTGIQNRAGVLFFLTTNQCFSSVSA 443

Query: 294 FPSFVEDMKVFQRERLNGHYGVTAFVIGNTLS-AMPFLIMITFISGTICYFMVRLHPGFI 352
              FV + K+F  E ++G+Y V+++  G  LS  +P  ++ + I   I YFM+ L P   
Sbjct: 444 VELFVVEKKLFIHEYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPTAD 503

Query: 353 HYLFFVLCLYASVAVVESLMMAIAS 377
            +   +  L        S+ +AIA+
Sbjct: 504 AFFIMMFTLMMVAYSASSMALAIAA 528

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). When overexpressed, the transfected cells become resistant to mitoxantrone. Overexpression in bone marrow stem cells does not interfere with hematopoietic stem cell maturation and increases the number of SP cells.

Macaca mulatta (taxid: 9544)

>sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2

 Score =  199 bits (507), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 153/509 (30%), Positives = 248/509 (48%), Gaps = 42/509 (8%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           E++  VE+ + +MGL+ CADTVIG    L+G+S GE++R+S A EIL  P++LF DEPTS
Sbjct: 106 ERQLRVEQVLTQMGLKKCADTVIGIPNQLKGLSCGEKKRLSFASEILTCPKILFCDEPTS 165

Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
           GLD+  A  V Q LR L+ +G TVI +IHQPSS V+ LF+ + L++ G+ +Y G    A 
Sbjct: 166 GLDAFMAGHVVQALRSLADNGMTVIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAV 225

Query: 124 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIK 183
             F + G+PCPA  NP+DH +R + +  D  +AT   SMK    T     +   + +  +
Sbjct: 226 PLFEKCGYPCPAYYNPADHLIRTL-AVIDSDRAT---SMK----TISKIRQGFLSTDLGQ 277

Query: 184 NLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGY 243
           +++     ++   A+       S+   T  +     ASF  Q   L  RS++ + RD   
Sbjct: 278 SVLAIGNANKLRAASFVTGSDTSEKTKTFFNQ-DYNASFWTQFLALFWRSWLTVIRDPNL 336

Query: 244 YWLRLVIYVVVTICIGTIYLNVGTGYNSILA-RGSCASFVFGFVTFMSIGGFPSFVEDMK 302
             +RL+  ++     G ++        +I++  G   + +      +     P    ++ 
Sbjct: 337 LSVRLLQILITAFITGIVFFQTPVTPATIISINGIMFNHIRNMNFMLQFPNVPVITAELP 396

Query: 303 VFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLY 362
           +  RE  NG Y  +A+ +   ++ +P  I++  +  TI Y+M  L+P F +Y F  L   
Sbjct: 397 IVLRENANGVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYCFASLVTI 456

Query: 363 ASVAVVESLMMAIA----------SIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKP 412
               V  S+  A+A          +I+P F++ I+   G    F  +  YF+        
Sbjct: 457 LITNVAISISYAVATIFANTDVAMTILPIFVVPIMAFGGFFITFDAIPSYFK-------- 508

Query: 413 VWRYPMSYLSFHYWALQGQYQNDLKGL--WFDNQSP-----DLPKIPGEYVLENVFQIDV 465
            W   +SY  + Y AL     + +K +   F++          PK  G  VLE+   ID 
Sbjct: 509 -WLSSLSYFKYGYEALAINEWDSIKVIPECFNSSMTAFALDSCPK-NGHQVLES---IDF 563

Query: 466 RRS-KWIDLSVIFSMIISYRIIFFVMIKI 493
             S K  D+S++F M I  RII +V + I
Sbjct: 564 SASHKIFDISILFGMFIGIRIIAYVALLI 592

Caenorhabditis elegans (taxid: 6239)

>sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1

 Score =  196 bits (499), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/432 (31%), Positives = 209/432 (48%), Gaps = 34/432 (7%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M   EK   +   I E+GL+  AD+ +G   +RGISGGER+R SI +E++  P +LFLDE
Sbjct: 151 MKNHEKNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDE 210

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PT+GLDS+ A  V   L+ +S+ GRT+I SIHQP   +F+LFD L LL+ GK V+ G   
Sbjct: 211 PTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQ 270

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 180
            A E+FA AG+ C    NP+D FL  IN D          ++ L  E  D+   K     
Sbjct: 271 KALEYFASAGYHCEPYNNPADFFLDVINGD--------SSAVMLNREEQDNEANKTEEPS 322

Query: 181 -----AIKNLIDFYQTSQ---HSYAAKEKVEGISKVKGT-VLDAGGSQASFLMQAFTLTK 231
                 I+NL +FY  S     + A  +++ G  + KGT          SF  Q   + +
Sbjct: 323 KGEKPVIENLSEFYINSAIYGETKAELDQLPGAQEKKGTSAFKEPVYVTSFCHQLRWIAR 382

Query: 232 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI 291
           RSF N+  +      +L++ V++ + IG IY ++      +  R     F+     F S+
Sbjct: 383 RSFKNLLGNPQASVAQLIVTVILGLIIGAIYFDLKYDAAGMQNRAGVLFFLTTNQCFSSV 442

Query: 292 GGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLS-AMPFLIMITFISGTICYFMVRLHPG 350
                FV + K+F  E ++G+Y V+++  G  +S  +P   + + I   + YFM+ L   
Sbjct: 443 SAVELFVVEKKLFIHEYISGYYRVSSYFFGKVMSDLLPMRFLPSVIFTCVLYFMLGLKKT 502

Query: 351 ----FIHYLFFVLCLYA------------SVAVVESLMMAIASIVPNFLMGIITGAGIQG 394
               FI     ++  Y             SV  V +L+M IA +      G++      G
Sbjct: 503 VDAFFIMMFTLIMVAYTASSMALAIATGQSVVSVATLLMTIAFVFMMLFSGLLVNLRTIG 562

Query: 395 IFMLVSGYFRLP 406
            ++    YF +P
Sbjct: 563 PWLSWLQYFSIP 574

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation.

Mus musculus (taxid: 10090)

>sp|Q9M2V7|AB16G_ARATH ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2

 Score =  194 bits (494), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 229/472 (48%), Gaps = 37/472 (7%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P S+K+  V+  I ++G+++ A T+IG+   RGISGGERRRVSI ++I+  P +LFLDE
Sbjct: 198 LPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRVSIGIDIIHDPIVLFLDE 257

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLDS +AF V + L+ ++  G  +I SIHQPS  V  L DRL  LS G TV+ G  +
Sbjct: 258 PTSGLDSTSAFMVVKVLKRIAESGSIIIMSIHQPSHRVLSLLDRLIFLSRGHTVFSGSPA 317

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINS------------DFDKVKATLKGSMKLKFET 168
           +   FFA  G P P   N ++  L  I              +F+K    +K     +  T
Sbjct: 318 SLPSFFAGFGNPIPENENQTEFALDLIRELEGSAGGTRGLVEFNKKWQEMKKQSNPQTLT 377

Query: 169 SD-DPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQAS------ 221
               P   +T  EAI   I           ++ K+        +V++ GG   +      
Sbjct: 378 PPASPNPNLTLKEAISASI-----------SRGKLVSGGGGGSSVINHGGGTLAVPAFAN 426

Query: 222 -FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCAS 280
            F ++  TLT+RS +N  R      +RL   +V    + T++  +      +  R    +
Sbjct: 427 PFWIEIKTLTRRSILNSRRQPELLGMRLATVIVTGFILATVFWRLDNSPKGVQERLGFFA 486

Query: 281 FVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTI 340
           F    + +      P F+++  +F RE     Y  +++V+ + +   P LI ++      
Sbjct: 487 FAMSTMFYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHAIVTFPSLIFLSLAFAVT 546

Query: 341 CYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVS 400
            ++ V L  G + +LF+ L + AS     S +  ++ +VP+ ++G      I   F+L S
Sbjct: 547 TFWAVGLEGGLMGFLFYCLIILASFWSGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFS 606

Query: 401 GYFRLPNDIPKP-VWRYPMSYLSFHYWA-LQGQYQND----LKGLWFDNQSP 446
           G+F   + IP+  +W + +S + + Y A LQ ++ +     ++G+   + SP
Sbjct: 607 GFFINRDRIPQYWIWFHYLSLVKYPYEAVLQNEFSDPTECFVRGVQLFDNSP 658

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	546
32364696	705	ABC transporter [Gossypium hirsutum]	0.998	0.773	0.895	0.0
255569405	705	ATP-binding cassette transporter, putati	1.0	0.774	0.902	0.0
225454545	705	PREDICTED: ABC transporter G family memb	0.985	0.763	0.894	0.0
147773147	716	hypothetical protein VITISV_006943 [Viti	0.985	0.751	0.894	0.0
356559983	706	PREDICTED: ABC transporter G family memb	0.987	0.763	0.879	0.0
356531001	707	PREDICTED: ABC transporter G family memb	0.987	0.762	0.875	0.0
449469450	696	PREDICTED: ABC transporter G family memb	1.0	0.784	0.866	0.0
224118648	698	white-brown-complex ABC transporter fami	0.970	0.759	0.881	0.0
63054104	687	white-brown complex protein 11 [Arabidop	0.978	0.777	0.867	0.0
22329638	703	ABC transporter G family member 11 [Arab	0.987	0.766	0.861	0.0

>gi|32364696|gb|AAP80385.1| ABC transporter [Gossypium hirsutum]

 Score = 1026 bits (2654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/546 (89%), Positives = 517/546 (94%), Gaps = 1/546 (0%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           MPWS KR LVE TIIEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDE
Sbjct: 161 MPWSAKRDLVEGTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDE 220

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLDSA+AFFVTQTLR LSRDGRTVIAS+HQPSSEVFELFD+LYLLS GKT+YFG+ S
Sbjct: 221 PTSGLDSASAFFVTQTLRGLSRDGRTVIASVHQPSSEVFELFDQLYLLSEGKTIYFGQAS 280

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 180
            A+EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDPLEKITT E
Sbjct: 281 EAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEASDDPLEKITTTE 340

Query: 181 AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRD 240
           AI+ LI+FY+TS   YAAKEKV+ ISKV+GTVLD+GGSQASFLMQ++TLTKRSFVNMSRD
Sbjct: 341 AIRTLINFYRTSHQCYAAKEKVDEISKVRGTVLDSGGSQASFLMQSYTLTKRSFVNMSRD 400

Query: 241 FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 300
           FGYYWLRL+IYVVVT+CIGTIYLN+GT YNSILARG+CASFVFGFVTFMSIGGFPSFVED
Sbjct: 401 FGYYWLRLLIYVVVTVCIGTIYLNIGTSYNSILARGACASFVFGFVTFMSIGGFPSFVED 460

Query: 301 MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLC 360
           MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGF HY+FFVLC
Sbjct: 461 MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFEHYMFFVLC 520

Query: 361 LYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 420
           LYASV VVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY
Sbjct: 521 LYASVTVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 580

Query: 421 LSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMI 480
           +SFH+WALQGQYQNDLKGL FDNQ P+LPKIPGEY+LENVFQIDV RSKWIDLSVIFSMI
Sbjct: 581 ISFHFWALQGQYQNDLKGLLFDNQPPELPKIPGEYILENVFQIDVGRSKWIDLSVIFSMI 640

Query: 481 ISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHA 540
           I YRIIFF+MIKISEDVTPWIRG +ARRRMQQKNGTQNT VAP  L+QSPSLRNYVAN A
Sbjct: 641 IIYRIIFFLMIKISEDVTPWIRGLVARRRMQQKNGTQNTMVAPS-LSQSPSLRNYVANRA 699

Query: 541 ARAGKR 546
              GKR
Sbjct: 700 NGRGKR 705

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569405|ref|XP_002525670.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223535106|gb|EEF36788.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score = 1020 bits (2637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/546 (90%), Positives = 523/546 (95%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           MPWSEKR LVE TIIEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDE
Sbjct: 160 MPWSEKRALVESTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDE 219

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLDSA+AFFVTQTLR LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S
Sbjct: 220 PTSGLDSASAFFVTQTLRGLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQAS 279

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 180
            A+EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKL+FE+S+DPLEKITTAE
Sbjct: 280 EAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFESSEDPLEKITTAE 339

Query: 181 AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRD 240
           AI+ L+++Y+TSQ+ YAA+EKVE ISKVKGTVLD+GGSQASFLMQAFTLTKRSFVNMSRD
Sbjct: 340 AIRTLVNYYRTSQYYYAAREKVEEISKVKGTVLDSGGSQASFLMQAFTLTKRSFVNMSRD 399

Query: 241 FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 300
           FGYYWLRLVIY+VVT+CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED
Sbjct: 400 FGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 459

Query: 301 MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLC 360
           MKVFQRERLNGHYGVTAFVI NT+SAMPFLIMITFISGTICYFMVRLHPGF HYLFFVLC
Sbjct: 460 MKVFQRERLNGHYGVTAFVISNTISAMPFLIMITFISGTICYFMVRLHPGFEHYLFFVLC 519

Query: 361 LYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 420
           LYASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY
Sbjct: 520 LYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 579

Query: 421 LSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMI 480
           +SFH+WALQGQYQNDL+GL FDNQ+PDLPKIPGEY+LE +FQIDV RSKW+DLSVIFSMI
Sbjct: 580 ISFHFWALQGQYQNDLRGLLFDNQTPDLPKIPGEYILEYIFQIDVHRSKWVDLSVIFSMI 639

Query: 481 ISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHA 540
           + YRIIFF+MIKISEDVTPWIRG +ARRRMQQKNGTQNTTVAPD LTQSPSLR Y+AN  
Sbjct: 640 VIYRIIFFIMIKISEDVTPWIRGYVARRRMQQKNGTQNTTVAPDGLTQSPSLRAYIANRP 699

Query: 541 ARAGKR 546
           AR  +R
Sbjct: 700 ARTLQR 705

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454545|ref|XP_002262619.1| PREDICTED: ABC transporter G family member 11 [Vitis vinifera] gi|297737190|emb|CBI26391.3| unnamed protein product [Vitis vinifera]

 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/539 (89%), Positives = 516/539 (95%), Gaps = 1/539 (0%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M WSEKR LVE TIIEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDE
Sbjct: 160 MRWSEKRALVESTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDE 219

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLDSA+AFFVTQTLR LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S
Sbjct: 220 PTSGLDSASAFFVTQTLRGLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQAS 279

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 180
            A+EFFAQAGFPCP LRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDPLEK+TTAE
Sbjct: 280 EAYEFFAQAGFPCPTLRNPSDHFLRCINSDFDKVKATLKGSMKLRFEISDDPLEKVTTAE 339

Query: 181 AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRD 240
           AI+ LIDFY+TSQ+SYAAKEKVE ISKVKGTVLD+GGSQASFLMQAFTLTKRSF+NMSRD
Sbjct: 340 AIRTLIDFYRTSQYSYAAKEKVEEISKVKGTVLDSGGSQASFLMQAFTLTKRSFINMSRD 399

Query: 241 FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 300
           FGYYWLRLVIY+VVTICIGTIYL+VGT YNSILARGSCASFVFGFVTFMSIGGFPSFVED
Sbjct: 400 FGYYWLRLVIYIVVTICIGTIYLDVGTSYNSILARGSCASFVFGFVTFMSIGGFPSFVED 459

Query: 301 MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLC 360
           MKVFQRERLNGHYGVTAFVI NT+SAMPFLI+ITFISGT+CYFMV LHPGF+HYLFFVLC
Sbjct: 460 MKVFQRERLNGHYGVTAFVISNTISAMPFLILITFISGTVCYFMVHLHPGFLHYLFFVLC 519

Query: 361 LYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 420
           LYASV VVESLMMAIAS++PNFLMGII GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY
Sbjct: 520 LYASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 579

Query: 421 LSFHYWALQGQYQNDLKGLWFDNQSPD-LPKIPGEYVLENVFQIDVRRSKWIDLSVIFSM 479
           +SFH+WALQGQYQNDLKGL FDNQ+P+ LPKIPG+Y+LENVFQI+V+RSKWIDLSVIFSM
Sbjct: 580 ISFHFWALQGQYQNDLKGLMFDNQTPNGLPKIPGDYILENVFQINVKRSKWIDLSVIFSM 639

Query: 480 IISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVAN 538
           I+ YRIIFF+MIKI+EDVTPW+RG +ARRRMQQKNG Q TT+APD LTQSPSLR+YVA 
Sbjct: 640 IVVYRIIFFIMIKINEDVTPWVRGYIARRRMQQKNGNQTTTIAPDGLTQSPSLRSYVAT 698

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773147|emb|CAN69297.1| hypothetical protein VITISV_006943 [Vitis vinifera]

 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/539 (89%), Positives = 516/539 (95%), Gaps = 1/539 (0%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M WSEKR LVE TIIEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDE
Sbjct: 160 MRWSEKRALVESTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDE 219

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLDSA+AFFVTQTLR LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S
Sbjct: 220 PTSGLDSASAFFVTQTLRGLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQAS 279

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 180
            A+EFFAQAGFPCP LRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDPLEK+TTAE
Sbjct: 280 EAYEFFAQAGFPCPTLRNPSDHFLRCINSDFDKVKATLKGSMKLRFEISDDPLEKVTTAE 339

Query: 181 AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRD 240
           AI+ LIDFY+TSQ+SYAAKEKVE ISKVKGTVLD+GGSQASFLMQAFTLTKRSF+NMSRD
Sbjct: 340 AIRTLIDFYRTSQYSYAAKEKVEEISKVKGTVLDSGGSQASFLMQAFTLTKRSFINMSRD 399

Query: 241 FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 300
           FGYYWLRLVIY+VVTICIGTIYL+VGT YNSILARGSCASFVFGFVTFMSIGGFPSFVED
Sbjct: 400 FGYYWLRLVIYIVVTICIGTIYLDVGTSYNSILARGSCASFVFGFVTFMSIGGFPSFVED 459

Query: 301 MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLC 360
           MKVFQRERLNGHYGVTAFVI NT+SAMPFLI+ITFISGT+CYFMV LHPGF+HYLFFVLC
Sbjct: 460 MKVFQRERLNGHYGVTAFVISNTISAMPFLILITFISGTVCYFMVHLHPGFLHYLFFVLC 519

Query: 361 LYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 420
           LYASV VVESLMMAIAS++PNFLMGII GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY
Sbjct: 520 LYASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 579

Query: 421 LSFHYWALQGQYQNDLKGLWFDNQSPD-LPKIPGEYVLENVFQIDVRRSKWIDLSVIFSM 479
           +SFH+WALQGQYQNDLKGL FDNQ+P+ LPKIPG+Y+LENVFQI+V+RSKWIDLSVIFSM
Sbjct: 580 ISFHFWALQGQYQNDLKGLMFDNQTPNGLPKIPGDYILENVFQINVKRSKWIDLSVIFSM 639

Query: 480 IISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVAN 538
           I+ YRIIFF+MIKI+EDVTPW+RG +ARRRMQQKNG Q TT+APD LTQSPSLR+YVA 
Sbjct: 640 IVVYRIIFFIMIKINEDVTPWVRGYIARRRMQQKNGNQTTTIAPDGLTQSPSLRSYVAT 698

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559983|ref|XP_003548275.1| PREDICTED: ABC transporter G family member 11-like [Glycine max]

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/539 (87%), Positives = 515/539 (95%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           MPW++KR LVE TI+ MGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDE
Sbjct: 166 MPWADKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDE 225

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLDSA+AFFVTQTLR L+RDGRTVIASIHQPSSEVFELFD+LYLLS GKTVYFG+ S
Sbjct: 226 PTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQAS 285

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 180
            A+EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDPL++ITTAE
Sbjct: 286 EAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDRITTAE 345

Query: 181 AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRD 240
           AI+ LIDFY+TSQHSYAA++KV+ ISKVKGTVL+AGGS+ASFLMQ++TLTKRSF+NMSRD
Sbjct: 346 AIRTLIDFYRTSQHSYAARQKVDEISKVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRD 405

Query: 241 FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 300
           FGYYWLRLVIY+VVT+CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED
Sbjct: 406 FGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 465

Query: 301 MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLC 360
           MKVFQRERLNGHYGVT+FVI NTLSAMPFLI+ITF+SGTICYFMVRLHPGF HYLFFVLC
Sbjct: 466 MKVFQRERLNGHYGVTSFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLC 525

Query: 361 LYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 420
           LYASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSGYFRLP+DIPKPVWRYPMSY
Sbjct: 526 LYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSY 585

Query: 421 LSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMI 480
           +SFH+WALQGQYQNDL+GL FDNQ+PDLPKIPGEY+LE VFQIDV RSKWI+LSVIFSMI
Sbjct: 586 ISFHFWALQGQYQNDLRGLIFDNQTPDLPKIPGEYILEKVFQIDVNRSKWINLSVIFSMI 645

Query: 481 ISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANH 539
           + YRIIFF+MIK++EDVTPWIRG LARRRMQQK+G QNTT+APD LTQSPSLR YV+  
Sbjct: 646 VIYRIIFFIMIKVNEDVTPWIRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRTYVSTQ 704

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531001|ref|XP_003534067.1| PREDICTED: ABC transporter G family member 11-like [Glycine max]

 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/539 (87%), Positives = 515/539 (95%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           MPW++KR LVE TI+ MGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDE
Sbjct: 167 MPWADKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDE 226

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLDSA+AFFVTQTLR L+RDGRTVIASIHQPSSEVFELFD+LYLLS GKTVYFG+ S
Sbjct: 227 PTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQAS 286

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 180
            A+EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDPL++ITTAE
Sbjct: 287 EAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDRITTAE 346

Query: 181 AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRD 240
           AI+ LIDFY+TSQHSYAA++KV+ IS+VKGTVL+AGGS+ASFLMQ++TLTKRSF+NMSRD
Sbjct: 347 AIRTLIDFYRTSQHSYAARQKVDEISRVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRD 406

Query: 241 FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 300
           FGYYWLRLVIY+VVT+CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED
Sbjct: 407 FGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 466

Query: 301 MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLC 360
           MKVFQRERLNGHYGVT+FVI NTLSAMPFLI+ITF+SGTICYFMVRLHPGF HYLFFVLC
Sbjct: 467 MKVFQRERLNGHYGVTSFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLC 526

Query: 361 LYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 420
           LYASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSGYFRLP+DIPKPVWRYPMSY
Sbjct: 527 LYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSY 586

Query: 421 LSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMI 480
           +SFH+WALQGQYQNDL+GL FDNQ+PDLPKIPGEY+LE VFQIDV RSKWI+LSVIFSMI
Sbjct: 587 ISFHFWALQGQYQNDLRGLVFDNQTPDLPKIPGEYILEKVFQIDVNRSKWINLSVIFSMI 646

Query: 481 ISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANH 539
           + YRIIFF+MIK++EDVTPW+RG LARRRMQQK+G QNTT+APD LTQSPSLR YV+  
Sbjct: 647 VIYRIIFFIMIKVNEDVTPWVRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRTYVSTQ 705

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469450|ref|XP_004152433.1| PREDICTED: ABC transporter G family member 11-like [Cucumis sativus] gi|449524820|ref|XP_004169419.1| PREDICTED: ABC transporter G family member 11-like [Cucumis sativus]

 Score =  984 bits (2543), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/546 (86%), Positives = 510/546 (93%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           MPW EKR L+E TIIEMGLQDCADTVIGNWHLRGISGGE+RRVSIA+EILMRPRLLFLDE
Sbjct: 151 MPWEEKRALIESTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIAIEILMRPRLLFLDE 210

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLDSA+AFFVTQTLR LSRDGRTVIASIHQPSSEVFELFD+LYLLSGGKTVYFG+ S
Sbjct: 211 PTSGLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQAS 270

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 180
            A+EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKL+FE+SDDPLE+ITTAE
Sbjct: 271 EAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFESSDDPLERITTAE 330

Query: 181 AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRD 240
           A++ LIDFY++SQH YAA EKVE ISK KGTVLD GGSQASF MQAFTLTKRSF+NMSRD
Sbjct: 331 AMRTLIDFYRSSQHCYAALEKVEEISKYKGTVLDLGGSQASFFMQAFTLTKRSFINMSRD 390

Query: 241 FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 300
           FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSF ED
Sbjct: 391 FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFAED 450

Query: 301 MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLC 360
           MKVF RERLNGHYGV +FVI NT+SAMPFL++ITF+SGTICYFMVRLHPGF HYLFFVLC
Sbjct: 451 MKVFHRERLNGHYGVGSFVISNTISAMPFLLLITFLSGTICYFMVRLHPGFEHYLFFVLC 510

Query: 361 LYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 420
           LYASV VVESLMMAIAS+VPNFLMGII GAGIQGIFMLVSGYFRLPNDIPKP WRYPMSY
Sbjct: 511 LYASVTVVESLMMAIASVVPNFLMGIIIGAGIQGIFMLVSGYFRLPNDIPKPFWRYPMSY 570

Query: 421 LSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMI 480
           +SFH+WALQGQYQNDL GL FDNQSP LPK+PGEY+L+ VFQID+ RSKW+DLSV+F MI
Sbjct: 571 ISFHFWALQGQYQNDLLGLSFDNQSPLLPKLPGEYILKVVFQIDLNRSKWVDLSVLFGMI 630

Query: 481 ISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHA 540
           + YR+IF +MIKI+EDVTPWIRG +ARRRMQQKNG  NTTVAPD LTQSPSLR+YVANH+
Sbjct: 631 VIYRLIFIIMIKINEDVTPWIRGYIARRRMQQKNGIVNTTVAPDGLTQSPSLRSYVANHS 690

Query: 541 ARAGKR 546
            R  +R
Sbjct: 691 TRPSRR 696

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118648|ref|XP_002331414.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222873628|gb|EEF10759.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/542 (88%), Positives = 510/542 (94%), Gaps = 12/542 (2%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           MPWSEKR LVE TIIEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDE
Sbjct: 169 MPWSEKRALVESTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDE 228

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLDSA+AFFVTQTLR LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF    
Sbjct: 229 PTSGLDSASAFFVTQTLRGLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF---- 284

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 180
                   AGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKL+FE SDDP+EKITTAE
Sbjct: 285 --------AGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEASDDPIEKITTAE 336

Query: 181 AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRD 240
           AI++LI +Y+TSQ+ YAA+EKVE ISKVKG VL++GGS+ASFLMQAFTLTKRSF+NMSRD
Sbjct: 337 AIRSLIGYYRTSQYCYAAREKVEEISKVKGDVLESGGSRASFLMQAFTLTKRSFINMSRD 396

Query: 241 FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 300
           FGYYWLRLVIY+VVT+CIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVE+
Sbjct: 397 FGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEE 456

Query: 301 MKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLC 360
           MKVFQRERLNGHYGV AFVI NT+SAMPFLIMITFISGT+CYFMVRLHPGF HYLFFVLC
Sbjct: 457 MKVFQRERLNGHYGVIAFVISNTISAMPFLIMITFISGTVCYFMVRLHPGFEHYLFFVLC 516

Query: 361 LYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 420
           L+ASV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY
Sbjct: 517 LFASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSY 576

Query: 421 LSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMI 480
           +SFH+WALQGQYQNDLKGL FDNQSPDLPKIPGEY+LEN+FQIDV RSKW+DLSVIFSMI
Sbjct: 577 ISFHFWALQGQYQNDLKGLLFDNQSPDLPKIPGEYILENIFQIDVHRSKWVDLSVIFSMI 636

Query: 481 ISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHA 540
           + YR+IFF+MIKISEDVTPWIRG +ARRRMQQKNGTQNTTVAPD LT SPSLRNYVA+H 
Sbjct: 637 VIYRVIFFIMIKISEDVTPWIRGYIARRRMQQKNGTQNTTVAPDGLTHSPSLRNYVADHR 696

Query: 541 AR 542
           ++
Sbjct: 697 SK 698

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|63054104|gb|AAY28856.1| white-brown complex protein 11 [Arabidopsis halleri subsp. gemmifera]

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/535 (86%), Positives = 499/535 (93%), Gaps = 1/535 (0%)

Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           SEKR LVERTIIEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTS
Sbjct: 154 SEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTS 213

Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
           GLDSA+AFFVTQTLR LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+
Sbjct: 214 GLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAY 273

Query: 124 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIK 183
           EFFAQAGFPCPALRNPSDHFLRCINSDFDKV+ATLKGSMKL+FE SDDPLEKITTAEAI+
Sbjct: 274 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIR 333

Query: 184 NLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGY 243
            L+D+Y TS + Y AK KVE IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGY
Sbjct: 334 VLVDYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGY 393

Query: 244 YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 303
           YWLRL+IY++VT+CIGTIYLNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 394 YWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 453

Query: 304 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYA 363
           FQRERLNGHYGV AFVI NTLSA PFLIMITFISGTICYFMV LHPGF HYLFFVLCLYA
Sbjct: 454 FQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYA 513

Query: 364 SVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSF 423
           SV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG+FRLPNDIPKP WRYPMSY+SF
Sbjct: 514 SVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISF 573

Query: 424 HYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISY 483
           H+WALQGQYQNDL+GL FD+Q     KIPGEYVLENVFQID+ RSKWI+LSVI SMII Y
Sbjct: 574 HFWALQGQYQNDLRGLMFDSQGSAF-KIPGEYVLENVFQIDLHRSKWINLSVILSMIIIY 632

Query: 484 RIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVAN 538
           RIIFF+MIK +EDVTPW+RG +ARRRM+QKNGTQNTTVAPD LTQSPSLRNY+A 
Sbjct: 633 RIIFFIMIKTNEDVTPWVRGYIARRRMKQKNGTQNTTVAPDGLTQSPSLRNYIAT 687

Source: Arabidopsis halleri subsp. gemmifera

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329638|ref|NP_173226.2| ABC transporter G family member 11 [Arabidopsis thaliana] gi|75330766|sp|Q8RXN0.1|AB11G_ARATH RecName: Full=ABC transporter G family member 11; Short=ABC transporter ABCG.11; Short=AtABCG11; AltName: Full=Protein CUTICULAR DEFECT AND ORGAN FUSION 1; AltName: Full=Protein DESPERADO; AltName: Full=Protein PERMEABLE LEAVES 1; AltName: Full=White-brown complex homolog protein 11; Short=AtWBC11 gi|19423992|gb|AAL87274.1| putative ABC transporter protein [Arabidopsis thaliana] gi|23297574|gb|AAN12898.1| putative ABC transporter protein [Arabidopsis thaliana] gi|332191521|gb|AEE29642.1| ABC transporter G family member 11 [Arabidopsis thaliana]

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/540 (86%), Positives = 500/540 (92%), Gaps = 1/540 (0%)

Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           SEKR LVERTIIEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTS
Sbjct: 162 SEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTS 221

Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
           GLDSA+AFFVTQTLR LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+
Sbjct: 222 GLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAY 281

Query: 124 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIK 183
           EFFAQAGFPCPALRNPSDHFLRCINSDFDKV+ATLKGSMKL+FE SDDPLEKITTAEAI+
Sbjct: 282 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIR 341

Query: 184 NLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGY 243
            L+D+Y TS + Y AK KVE IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGY
Sbjct: 342 LLVDYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGY 401

Query: 244 YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 303
           YWLRL+IY++VT+CIGTIYLNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct: 402 YWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 461

Query: 304 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYA 363
           FQRERLNGHYGV AFVI NTLSA PFLIMITFISGTICYFMV LHPGF HYLFFVLCLYA
Sbjct: 462 FQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYA 521

Query: 364 SVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSF 423
           SV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG+FRLPNDIPKP WRYPMSY+SF
Sbjct: 522 SVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISF 581

Query: 424 HYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISY 483
           H+WALQGQYQNDL+GL FD+Q     KIPGEYVLENVFQID+ RSKWI+LSVI SMII Y
Sbjct: 582 HFWALQGQYQNDLRGLTFDSQGSAF-KIPGEYVLENVFQIDLHRSKWINLSVILSMIIIY 640

Query: 484 RIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVANHAARA 543
           RIIFF+MIK +EDVTPW+RG +ARRRM+QKNGTQNTTVAPD LTQSPSLRNY+A     A
Sbjct: 641 RIIFFIMIKTNEDVTPWVRGYIARRRMKQKNGTQNTTVAPDGLTQSPSLRNYIATRTDGA 700

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	546
TAIR|locus:2030898	703	ABCG11 "ATP-binding cassette G	0.976	0.758	0.868	6e-254
TAIR|locus:2033899	687	ABCG12 "ATP-binding cassette G	0.926	0.736	0.576	1.7e-160
TAIR|locus:2092960	691	ABCG15 "ATP-binding cassette G	0.934	0.738	0.564	3.6e-160
TAIR|locus:2033939	678	ABCG13 "ATP-binding cassette G	0.965	0.777	0.490	9.6e-144
TAIR|locus:2046203	730	ABCG3 "ATP-binding cassette G3	0.880	0.658	0.376	7.5e-89
CGD|CAL0002254	579	orf19.3120 [Candida albicans (	0.575	0.542	0.287	3.7e-61
UNIPROTKB|Q5A0X6	579	CaO19.10632 "Putative uncharac	0.575	0.542	0.287	3.7e-61
DICTYBASE|DDB_G0269214	793	abcG1 "ABC transporter G famil	0.278	0.191	0.467	8e-55
TAIR|locus:2039682	740	ABCG1 "ATP-binding cassette G1	0.794	0.586	0.298	7.3e-53
WB|WBGene00015479	598	wht-1 [Caenorhabditis elegans	0.860	0.785	0.316	1.1e-50

TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)]

 Score = 2445 (865.7 bits), Expect = 6.0e-254, P = 6.0e-254
 Identities = 464/534 (86%), Positives = 499/534 (93%)

Query:     4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
             SEKR LVERTIIEMGLQDCADTVIGNWHLRGISGGE+RRVSIALEILMRPRLLFLDEPTS
Sbjct:   162 SEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTS 221

Query:    64 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
             GLDSA+AFFVTQTLR LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG+ S A+
Sbjct:   222 GLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAY 281

Query:   124 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIK 183
             EFFAQAGFPCPALRNPSDHFLRCINSDFDKV+ATLKGSMKL+FE SDDPLEKITTAEAI+
Sbjct:   282 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIR 341

Query:   184 NLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGY 243
              L+D+Y TS + Y AK KVE IS+ KGT+LD+GGSQASFL+Q +TLTKRSF+NMSRDFGY
Sbjct:   342 LLVDYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGY 401

Query:   244 YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 303
             YWLRL+IY++VT+CIGTIYLNVGT Y++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKV
Sbjct:   402 YWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 461

Query:   304 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYA 363
             FQRERLNGHYGV AFVI NTLSA PFLIMITFISGTICYFMV LHPGF HYLFFVLCLYA
Sbjct:   462 FQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYA 521

Query:   364 SVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSF 423
             SV VVESLMMAIASIVPNFLMGII GAGIQGIFMLVSG+FRLPNDIPKP WRYPMSY+SF
Sbjct:   522 SVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISF 581

Query:   424 HYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISY 483
             H+WALQGQYQNDL+GL FD+Q     KIPGEYVLENVFQID+ RSKWI+LSVI SMII Y
Sbjct:   582 HFWALQGQYQNDLRGLTFDSQGSAF-KIPGEYVLENVFQIDLHRSKWINLSVILSMIIIY 640

Query:   484 RIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYVA 537
             RIIFF+MIK +EDVTPW+RG +ARRRM+QKNGTQNTTVAPD LTQSPSLRNY+A
Sbjct:   641 RIIFFIMIKTNEDVTPWVRGYIARRRMKQKNGTQNTTVAPDGLTQSPSLRNYIA 694

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0015245 "fatty acid transporter activity" evidence=TAS

GO:0015908 "fatty acid transport" evidence=TAS

GO:0080051 "cutin transport" evidence=IMP

TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)]

 Score = 1563 (555.3 bits), Expect = 1.7e-160, P = 1.7e-160
 Identities = 295/512 (57%), Positives = 389/512 (75%)

Query:     5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
             E   +VE TIIE+GLQDCAD VIGNWH RG+SGGER+RVS+ALEIL RP++LFLDEPTSG
Sbjct:   138 EVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSG 197

Query:    65 LDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
             LDSA+AFFV Q LR ++RDG RTV++SIHQPSSEVF LFD L+LLS G+TVYFGE+  A 
Sbjct:   198 LDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAV 257

Query:   124 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPLEKITTAEA 181
             EFFA+AGFPCP  RNPSDHFLRCINSDFD V ATLKGS +++ ET  + DPL  + T+E 
Sbjct:   258 EFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIR-ETPATSDPLMNLATSEI 316

Query:   182 IKNLIDFYQTSQHSYAAKEKVEGISKVKGTV-LDAG-GSQASFLMQAFTLTKRSFVNMSR 239
                L++ Y+ S ++ +AK ++  ++ ++G   ++   GS+A++  Q  TLTKRSFVNM R
Sbjct:   317 KARLVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCR 376

Query:   240 DFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVE 299
             D GYYW R+VIY+VV+ C+GTI+ +VG  Y SILAR SC  F+ GF+TFMSIGGFPSF+E
Sbjct:   377 DIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIE 436

Query:   300 DMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVL 359
             +MKVF +ERL+G+YGV+ ++I N +S+ PFL+ I  I+G+I Y MV+  PG  H+ FF L
Sbjct:   437 EMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCL 496

Query:   360 CLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMS 419
              ++ SV+V+ESLMM +AS+VPNFLMG+ITGAGI GI M+ SG+FRL  D+PK  WRYP+S
Sbjct:   497 NIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRYPIS 556

Query:   420 YLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSM 479
             ++S+  WA+QG Y+ND  GL FD      PK+ GE V+  +F + V  SKW DLS I  +
Sbjct:   557 FMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAIVLI 616

Query:   480 IISYRIIFFVMIKISEDVTPWIRGCLARRRMQ 511
             ++ YRI+FF+++K+ E   P ++   A+R M+
Sbjct:   617 LVCYRILFFIVLKLKERAEPALKAIQAKRTMK 648

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1560 (554.2 bits), Expect = 3.6e-160, P = 3.6e-160
 Identities = 290/514 (56%), Positives = 393/514 (76%)

Query:     1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
             M   E   +VE TI+E+GLQDC+D VIGNWH RG+SGGER+RVSIALEIL RP++LFLDE
Sbjct:   135 MSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDE 194

Query:    61 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
             PTSGLDSA+AFFV Q LR ++RDGRTVI+S+HQPSSEVF LFD L+LLS G++VYFGE  
Sbjct:   195 PTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAK 254

Query:   121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFET--SDDPLEKITT 178
             +A EFFA++GFPCP  RNPSDHFLRCINSDFD V ATLKGS +++ ET  + DPL  + T
Sbjct:   255 SAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQ-ETPATSDPLMNLAT 313

Query:   179 AEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAG-GSQASFLMQAFTLTKRSFVNM 237
             +     L++ Y+ S+++ +AK ++  +S ++G  ++   GS+A++  Q  TLT RSF+NM
Sbjct:   314 SVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINM 373

Query:   238 SRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSF 297
              RD GYYW R++ Y+VV+I +GTI+ +VG  Y SILAR SC  F+ GF+TFMSIGGFPSF
Sbjct:   374 CRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSF 433

Query:   298 VEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFF 357
             +E+MKVF +ERL+G+YGV+ +++ N +S+ PFL+ I+ I+GTI Y +V+  PGF HY FF
Sbjct:   434 LEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFF 493

Query:   358 VLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYP 417
              L ++ SV+V+ESLMM +AS+VPNFLMG+ITGAG+ GI M+ SG+FRL  D+PK  WRYP
Sbjct:   494 CLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYP 553

Query:   418 MSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIF 477
             +SY+S+  WA+QG Y+ND  GL F+   P  PK+ GE V+E VF + V  SKW DL+ + 
Sbjct:   554 VSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAVV 613

Query:   478 SMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQ 511
             ++++ YR++FFV++K+ E   P ++   A+R M+
Sbjct:   614 AILVCYRLLFFVVLKLRERAGPALKAIQAKRTMR 647

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
 Identities = 267/544 (49%), Positives = 378/544 (69%)

Query:     9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 68
             +VE TI +MGL++C+D  IGNWHLRGISGGE++R+SIALE+L +P LLFLDEPTSGLDSA
Sbjct:   128 IVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSA 187

Query:    69 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128
             +AFFV Q LR ++  G+TV++SIHQPS EVF LFD L LLSGG+TVYFGE  +A +FF +
Sbjct:   188 SAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGE 247

Query:   129 AGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLK---------FETSD--DPLEKIT 177
             AGFPCP+ RNPSDHFLRC+NSDFD V A L  S ++           ET++  DPL+ I 
Sbjct:   248 AGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIP 307

Query:   178 TAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAG-GSQASFLMQAFTLTKRSFVN 236
             TAE    L+  ++ S ++ A++ +++ I+ + G V +   GSQ ++  Q   LT+RSF+N
Sbjct:   308 TAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLRILTQRSFIN 367

Query:   237 MSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPS 296
             MSRD GYYW+R+ +Y+V++IC+G+I+ NVG  + ++++  +C  F+ GF+TFMSIGGF S
Sbjct:   368 MSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQS 427

Query:   297 FVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLF 356
             F+E+MKVF RERLNGHYGV  + + N LS++PF+I++   + +I  +MVR   G  H+ +
Sbjct:   428 FIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFY 487

Query:   357 FVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRY 416
               L L  ++  VES MM IAS+VPNFLMG++ GAG  GI +L +G+FR   D+P   WRY
Sbjct:   488 NCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRY 547

Query:   417 PMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVI 476
             P+SY+++  WALQG Y+N++ G+ +D+  P +PK+ GE +L+ V  I+   SKW+DL+V+
Sbjct:   548 PVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLDLAVV 607

Query:   477 FSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDRLTQSPSLRNYV 536
               ++I YRI FF ++K  E V P I     +R +       +      R+T  PS R Y 
Sbjct:   608 MMILIGYRIAFFAILKFREKVFPVIHMLYTKRTLSHIQKRPSFR----RMTPFPS-RRYP 662

Query:   537 ANHA 540
              +HA
Sbjct:   663 VHHA 666

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009651 "response to salt stress" evidence=IDA

GO:0080051 "cutin transport" evidence=IMP

GO:0080172 "petal epidermis patterning" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 185/491 (37%), Positives = 302/491 (61%)

Query:     5 EKRTLVERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
             +KR++VE  I  M L D A+ +IG + +++G+  GERRRVSIA E++MRP +LF+DEP  
Sbjct:   225 QKRSVVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLY 284

Query:    64 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
              LDS +A  +  TL+ L+  G T++ +I+Q S+EVF LFDR+ LLS G T++FGET A  
Sbjct:   285 HLDSVSALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACL 344

Query:   124 EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIK 183
             + F+ AGFPCP +++PSDHFLR IN+DFD++ A  K       +  D     + TA AI+
Sbjct:   345 QHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQD---DNGDFSAVNMDTAVAIR 401

Query:   184 NLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGY 243
              L   Y++S  + + +  +  +++ +GT L + G +A    +   LT RS + MSR++ Y
Sbjct:   402 TLEATYKSSADADSVEAMIIKLTEREGTQLKSKG-KAGAATRVAVLTWRSLLVMSREWKY 460

Query:   244 YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVF-GFVTFMSIGGFPSFVEDMK 302
             YWLRL++Y+++T+ IGT+Y  +G   +S+  R + A FVF  F + + I G PS ++++K
Sbjct:   461 YWLRLILYMILTLSIGTLYSGLGHSLSSVATRVA-AVFVFVSFASLLGIAGIPSLLKEIK 519

Query:   303 VFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLY 362
             +++ E  N H G   F++G  L ++PFL +++  S  + YFMV L   F   ++FVL  +
Sbjct:   520 IYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFF 579

Query:   363 ASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLS 422
               + V E LM+ IA I  +     +T   +  I ML +G+FR+   +PKPVW YP +Y+S
Sbjct:   580 MCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYIS 639

Query:   423 FHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDV-RRSKWIDLSVIFSMII 481
             FH ++++G  +N+  G  F     ++  I G   ++  +QI     +KW ++ V+ +M  
Sbjct:   640 FHTYSIEGLLENEYLGEVF--AVGEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAF 697

Query:   482 SYRIIFFVMIK 492
              YR++ +V+++
Sbjct:   698 GYRLLVYVLLR 708

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)]

 Score = 357 (130.7 bits), Expect = 3.7e-61, Sum P(2) = 3.7e-61
 Identities = 96/334 (28%), Positives = 166/334 (49%)

Query:   176 ITTAEAIKNLI--DFYQTSQ--HSYAAKEKVEGISKVKGT--VLDAGGSQASFLMQAFTL 229
             I  AE + +LI  DF   S       +K     + KV GT  V     +  + +     L
Sbjct:   248 INPAEYVLDLINTDFQGDSSVLDDLVSKWNSGDVHKV-GTESVQLTEATTINEMQNILIL 306

Query:   230 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM 289
               RS     RD   Y++RLV+Y+ + I +GT++L +  G  +I    +   F   F++FM
Sbjct:   307 IARSLTKARRDILTYYVRLVMYLGLAILMGTVWLRLQNGQKNIQPFINAIFFSGAFMSFM 366

Query:   290 SIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHP 349
             S+   PS++ED++ +++ER+NG YG  AF + N L  +PFL +I  +   I +FMV  H 
Sbjct:   367 SVAYIPSYLEDIQSYKKERMNGLYGPLAFSLANFLVGLPFLFLIAAVFSVITFFMVNFHQ 426

Query:   350 GFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI 409
                 + ++++ L+  +   ES+   IAS+ PNF++ +   A   G++M V G F +P++I
Sbjct:   427 TASGFWYYLMWLFLDLVAAESMTTFIASVFPNFVVSLAITAFANGLWMAVGG-FLVPSNI 485

Query:   410 PKPVWRYPMSYLSFHYWALQGQYQNDLKGLWF---DN-----QSP--DLPKIPGEYVLEN 459
                 W Y   ++ +  +  QG   N+     F   D       SP     KI G+ VLE+
Sbjct:   486 LNVFWYYTFYWIDYQRYVFQGMIFNEFTNREFRCGDGCHCMYDSPLASQCKISGKAVLES 545

Query:   460 VFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI 493
             +   +  +  WI   V+ +++  YR   ++++K+
Sbjct:   546 LGYGNYDKGLWI--GVLIALVFVYRFATYIVLKL 577

GO:0005524 "ATP binding" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 357 (130.7 bits), Expect = 3.7e-61, Sum P(2) = 3.7e-61
 Identities = 96/334 (28%), Positives = 166/334 (49%)

Query:   176 ITTAEAIKNLI--DFYQTSQ--HSYAAKEKVEGISKVKGT--VLDAGGSQASFLMQAFTL 229
             I  AE + +LI  DF   S       +K     + KV GT  V     +  + +     L
Sbjct:   248 INPAEYVLDLINTDFQGDSSVLDDLVSKWNSGDVHKV-GTESVQLTEATTINEMQNILIL 306

Query:   230 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM 289
               RS     RD   Y++RLV+Y+ + I +GT++L +  G  +I    +   F   F++FM
Sbjct:   307 IARSLTKARRDILTYYVRLVMYLGLAILMGTVWLRLQNGQKNIQPFINAIFFSGAFMSFM 366

Query:   290 SIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHP 349
             S+   PS++ED++ +++ER+NG YG  AF + N L  +PFL +I  +   I +FMV  H 
Sbjct:   367 SVAYIPSYLEDIQSYKKERMNGLYGPLAFSLANFLVGLPFLFLIAAVFSVITFFMVNFHQ 426

Query:   350 GFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI 409
                 + ++++ L+  +   ES+   IAS+ PNF++ +   A   G++M V G F +P++I
Sbjct:   427 TASGFWYYLMWLFLDLVAAESMTTFIASVFPNFVVSLAITAFANGLWMAVGG-FLVPSNI 485

Query:   410 PKPVWRYPMSYLSFHYWALQGQYQNDLKGLWF---DN-----QSP--DLPKIPGEYVLEN 459
                 W Y   ++ +  +  QG   N+     F   D       SP     KI G+ VLE+
Sbjct:   486 LNVFWYYTFYWIDYQRYVFQGMIFNEFTNREFRCGDGCHCMYDSPLASQCKISGKAVLES 545

Query:   460 VFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI 493
             +   +  +  WI   V+ +++  YR   ++++K+
Sbjct:   546 LGYGNYDKGLWI--GVLIALVFVYRFATYIVLKL 577

GO:0005524 "ATP binding" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 382 (139.5 bits), Expect = 8.0e-55, Sum P(2) = 8.0e-55
 Identities = 72/154 (46%), Positives = 105/154 (68%)

Query:     1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWH--LRGISGGERRRVSIALEILMRPRLLFL 58
             +P  EK   V+  I EMGL  CADT++G     +RGISGGERRRV+I++E+L  P ++ L
Sbjct:   228 VPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGPSVILL 287

Query:    59 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
             DEPTSGLD++ +F+V   L+ L++ GRT+I +IHQP S ++++FD L LL  G T+Y+G+
Sbjct:   288 DEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYGK 347

Query:   119 TSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFD 152
              + A E+F   G+ C    NP+D FL  IN+  +
Sbjct:   348 ANKALEYFNANGYHCSEKTNPADFFLDLINTQVE 381

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2039682 ABCG1 "ATP-binding cassette G1" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 7.3e-53, Sum P(3) = 7.3e-53
 Identities = 135/453 (29%), Positives = 217/453 (47%)

Query:     1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
             +P S+K+  V+  I ++G+++ A T+IG+   RGISGGERRRVSI ++I+  P LLFLDE
Sbjct:   200 LPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDE 259

Query:    61 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
             PTSGLDS +AF V + L+ +++ G  VI SIHQPS  V  L DRL  LS G TVY G  +
Sbjct:   260 PTSGLDSTSAFMVVKVLKRIAQSGSIVIMSIHQPSHRVLGLLDRLIFLSRGHTVYSGSPA 319

Query:   121 AAFEFFAQAGFPCPALRNPSDHFLRCINS------------DFDKVKATLK--GSMKLKF 166
             +   FF + G P P   N ++  L  I              +F+K    +K   + +   
Sbjct:   320 SLPRFFTEFGSPIPENENRTEFALDLIRELEGSAGGTRGLIEFNKKWQEMKKQSNRQPPL 379

Query:   167 ETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQA 226
                  P   +T  EAI   I      +     +    G +    T L          ++ 
Sbjct:   380 TPPSSPYPNLTLKEAIAASIS---RGKLVSGGESVAHGGATTNTTTLAVPAFANPMWIEI 436

Query:   227 FTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFV 286
              TL+KRS +N  R    + +R+   V+    + T++  +      +  R    +F    +
Sbjct:   437 KTLSKRSMLNSRRQPELFGIRIASVVITGFILATVFWRLDNSPKGVQERLGFFAFAMSTM 496

Query:   287 TFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVR 346
              +      P F+++  +F RE     Y  +++V+ + + + P LI ++       Y+ V 
Sbjct:   497 FYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHAIVSFPSLIFLSVAFAATTYWAVG 556

Query:   347 LHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLP 406
             L  G    LF+ L + AS     S +  ++ +VP+ ++G      I   F+L SG+F   
Sbjct:   557 LDGGLTGLLFYCLIILASFWSGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFINR 616

Query:   407 NDIPKP-VWRYPMSYLSFHYWA-LQGQYQNDLK 437
             N IP   +W + MS + + Y A LQ ++ +  K
Sbjct:   617 NRIPDYWIWFHYMSLVKYPYEAVLQNEFSDATK 649

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

WB|WBGene00015479 wht-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 160/506 (31%), Positives = 255/506 (50%)

Query:     5 EKRTLVERTIIEMGLQDCADTVIG--NWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 62
             E++  VE+ + +MGL+ CADTVIG  N  L+G+S GE++R+S A EIL  P++LF DEPT
Sbjct:   106 ERQLRVEQVLTQMGLKKCADTVIGIPN-QLKGLSCGEKKRLSFASEILTCPKILFCDEPT 164

Query:    63 SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122
             SGLD+  A  V Q LR L+ +G TVI +IHQPSS V+ LF+ + L++ G+ +Y G    A
Sbjct:   165 SGLDAFMAGHVVQALRSLADNGMTVIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQA 224

Query:   123 FEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKAT-LKGSMKLK--FETSDDPLEKITTA 179
                F + G+PCPA  NP+DH +R + +  D  +AT +K   K++  F ++D     +   
Sbjct:   225 VPLFEKCGYPCPAYYNPADHLIRTL-AVIDSDRATSMKTISKIRQGFLSTDLGQSVLAIG 283

Query:   180 EAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSR 239
              A K     + T   +    EK +       T  +   + ASF  Q   L  RS++ + R
Sbjct:   284 NANKLRAASFVTGSDT---SEKTK-------TFFNQDYN-ASFWTQFLALFWRSWLTVIR 332

Query:   240 DFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILA-RGSCASFVFGFVTFMSIGGFPSFV 298
             D     +RL+  ++     G ++        +I++  G   + +      +     P   
Sbjct:   333 DPNLLSVRLLQILITAFITGIVFFQTPVTPATIISINGIMFNHIRNMNFMLQFPNVPVIT 392

Query:   299 EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLF-- 356
              ++ +  RE  NG Y  +A+ +   ++ +P  I++  +  TI Y+M  L+P F +Y F  
Sbjct:   393 AELPIVLRENANGVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYCFAS 452

Query:   357 FVLCLYASVAVVESLMMAIASIVPNFLMGI-ITGAGIQGIFMLVSGYFRLPNDIPKPV-W 414
              V  L  +VA+  S+  A+A+I  N  + + I    +  I M   G+F   + IP    W
Sbjct:   453 LVTILITNVAI--SISYAVATIFANTDVAMTILPIFVVPI-MAFGGFFITFDAIPSYFKW 509

Query:   415 RYPMSYLSFHYWALQGQYQNDLKGL--WFDNQSPD--LPKIP--GEYVLENVFQIDVRRS 468
                +SY  + Y AL     + +K +   F++      L   P  G  VLE+   ID   S
Sbjct:   510 LSSLSYFKYGYEALAINEWDSIKVIPECFNSSMTAFALDSCPKNGHQVLES---IDFSAS 566

Query:   469 -KWIDLSVIFSMIISYRIIFFVMIKI 493
              K  D+S++F M I  RII +V + I
Sbjct:   567 HKIFDISILFGMFIGIRIIAYVALLI 592

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RXN0	AB11G_ARATH	No assigned EC number	0.8611	0.9871	0.7667	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	546
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	4e-96
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	5e-52
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-47
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	1e-45
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	7e-41
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	1e-39
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	2e-35
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-32
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	2e-28
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-27
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	8e-25
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	3e-24
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-20
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-20
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	1e-18
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	9e-18
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-17
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-15
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	2e-15
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	7e-15
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	7e-15
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	9e-15
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-14
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-14
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	4e-14
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	8e-14
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	9e-14
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	1e-13
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-13
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	4e-13
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	5e-13
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	5e-13
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	6e-13
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	6e-13
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	7e-13
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	8e-13
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-12
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-12
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	3e-12
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	6e-12
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	7e-12
COG4988	559	COG4988, CydD, ABC-type transport system involved	9e-12
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	1e-11
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	1e-11
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-11
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-11
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-11
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	2e-11
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	2e-11
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	5e-11
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	5e-11
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	6e-11
pfam00005	119	pfam00005, ABC_tran, ABC transporter	6e-11
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	7e-11
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	8e-11
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	9e-11
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	9e-11
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-10
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-10
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	1e-10
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	1e-10
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	1e-10
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	2e-10
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-10
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-10
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	2e-10
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-10
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	3e-10
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	4e-10
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	4e-10
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	5e-10
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	5e-10
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	6e-10
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	6e-10
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	8e-10
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	8e-10
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	8e-10
COG1123	539	COG1123, COG1123, ATPase components of various ABC	8e-10
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	8e-10
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	8e-10
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	8e-10
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	1e-09
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-09
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	2e-09
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-09
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-09
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-09
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	2e-09
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	2e-09
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	2e-09
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-09
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	3e-09
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	5e-09
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	5e-09
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	5e-09
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	5e-09
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	7e-09
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	7e-09
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	7e-09
COG1123	539	COG1123, COG1123, ATPase components of various ABC	8e-09
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	8e-09
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	8e-09
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	9e-09
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	9e-09
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-08
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-08
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	2e-08
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	2e-08
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	2e-08
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-08
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	2e-08
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	2e-08
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	3e-08
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	3e-08
COG4598	256	COG4598, HisP, ABC-type histidine transport system	3e-08
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	3e-08
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-08
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	3e-08
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	3e-08
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	3e-08
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	4e-08
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	4e-08
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	4e-08
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	6e-08
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	6e-08
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	8e-08
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	9e-08
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	9e-08
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	9e-08
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-07
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	1e-07
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	1e-07
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	1e-07
COG5265	497	COG5265, ATM1, ABC-type transport system involved	1e-07
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	1e-07
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	1e-07
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-07
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	1e-07
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-07
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	2e-07
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-07
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-07
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-07
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	2e-07
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	2e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-07
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-07
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	2e-07
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	2e-07
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	2e-07
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	2e-07
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	2e-07
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	2e-07
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	2e-07
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-07
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-07
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	3e-07
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	3e-07
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	3e-07
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	3e-07
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	4e-07
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	4e-07
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	4e-07
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	4e-07
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	4e-07
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	5e-07
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	5e-07
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	5e-07
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	6e-07
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	6e-07
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	7e-07
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	7e-07
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	7e-07
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	7e-07
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	7e-07
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	7e-07
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	8e-07
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	1e-06
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	1e-06
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	1e-06
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	1e-06
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	1e-06
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	1e-06
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-06
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-06
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	2e-06
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	3e-06
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	3e-06
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	3e-06
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	3e-06
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	3e-06
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	4e-06
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	4e-06
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	4e-06
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	4e-06
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	4e-06
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	4e-06
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	5e-06
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	5e-06
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	5e-06
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	5e-06
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	6e-06
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	6e-06
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	6e-06
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	6e-06
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	6e-06
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	6e-06
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	6e-06
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	7e-06
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	7e-06
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	7e-06
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	7e-06
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	8e-06
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	9e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-05
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	1e-05
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	1e-05
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-05
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	1e-05
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	1e-05
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	1e-05
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	2e-05
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	2e-05
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	2e-05
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	2e-05
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-05
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-05
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	2e-05
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	2e-05
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	2e-05
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	2e-05
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	2e-05
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	2e-05
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	2e-05
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-05
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	2e-05
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	2e-05
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-05
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-05
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	3e-05
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	3e-05
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	3e-05
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	4e-05
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	4e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-05
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	4e-05
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	5e-05
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	5e-05
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	5e-05
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	6e-05
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	7e-05
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	7e-05
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	7e-05
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	8e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	8e-05
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	9e-05
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	9e-05
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	9e-05
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	1e-04
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	1e-04
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	1e-04
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	1e-04
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	1e-04
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	1e-04
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	1e-04
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	1e-04
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-04
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	2e-04
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	2e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-04
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-04
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	2e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-04
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	2e-04
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-04
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	2e-04
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	2e-04
pfam13304	256	pfam13304, AAA_21, AAA domain	2e-04
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	2e-04
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	3e-04
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	3e-04
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	3e-04
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	3e-04
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	4e-04
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	4e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	5e-04
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	5e-04
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	5e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	6e-04
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	6e-04
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	6e-04
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	6e-04
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	7e-04
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	7e-04
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	7e-04
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	8e-04
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	8e-04
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	8e-04
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	0.001
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	0.001
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	0.001
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	0.001
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.002
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	0.002
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	0.002
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	0.002
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	0.002
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	0.002
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	0.002
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	0.003
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	0.003
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	0.003
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	0.003
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	0.004
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	0.004
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	0.004

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  304 bits (781), Expect = 4e-96
 Identities = 145/509 (28%), Positives = 244/509 (47%), Gaps = 45/509 (8%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGN-WHLRGISGGERRRVSIALEILMRPRLLFLD 59
           +   EKR  V+  +  +GL+ CA+T IG    ++G+SGGER+R++ A E+L  P LLF D
Sbjct: 132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191

Query: 60  EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           EPTSGLDS  A+ V Q L+ L++ G+T+I +IHQPSSE+FELFD++ L++ G+  Y G  
Sbjct: 192 EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSP 251

Query: 120 SAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTA 179
             A  FF+  G PCP   NP+D +++ +                     +  P  +  + 
Sbjct: 252 DQAVPFFSDLGHPCPENYNPADFYVQVL---------------------AVIPGSENESR 290

Query: 180 EAIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAG------GSQASFLMQAFTLTKRS 233
           E I+ + D +  S             S   G ++         G  AS+  Q + L KRS
Sbjct: 291 ERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRS 350

Query: 234 FVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM---- 289
           ++++ RD     +RL+  ++  I IG IYL  G     +         +F F+T M    
Sbjct: 351 WLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN---GALFLFLTNMTFQN 407

Query: 290 SIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHP 349
                  F  ++ VF RE  +G Y V+A+ +  T++ +P  I++  +  +I Y+M+ L  
Sbjct: 408 VFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRS 467

Query: 350 GFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI 409
           G  H+L F+  +     V  S    I+    +  M +  G      F+L  G+F   + I
Sbjct: 468 GATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSI 527

Query: 410 PKPVWRYPMSYLSFHYWA----LQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDV 465
           P   +++ +SYLS+  +     L  Q+ +          +       GE +LE    +  
Sbjct: 528 PV-YFKW-LSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILE---TLSF 582

Query: 466 RRSK-WIDLSVIFSMIISYRIIFFVMIKI 493
           R +  ++DL  +  +I  +R++ +  ++I
Sbjct: 583 RNADLYLDLIGLVILIFFFRLLAYFALRI 611

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score =  187 bits (477), Expect = 5e-52
 Identities = 142/514 (27%), Positives = 246/514 (47%), Gaps = 61/514 (11%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           EK  + E  I E+GL  C +T+IGN  +RGISGGER+RVSIA E+L+ P LL LDEPTSG
Sbjct: 177 EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236

Query: 65  LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
           LD+ AA+ +  TL  L++ G+T++ S+HQPSS V+++FD + +LS G+ ++FG+ S A  
Sbjct: 237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296

Query: 125 FFAQAGFPCPALRNPSDHFLRCINS--DFDKVKATLKGSMKLKFETSDDPL--EKITTAE 180
           +F   GF      NP+D  L   N     D V    K ++K     S + L   K+  A 
Sbjct: 297 YFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAI 356

Query: 181 AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRD 240
            + +          S + KE            +    +Q S L+Q  +L +R      + 
Sbjct: 357 EMSHFPQANARFVGSASTKEHRSSDR----ISISTWFNQFSILLQR-SLKER------KH 405

Query: 241 FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI--GGFPS-- 296
             +  LR+   +   +  G ++ +  + +  +  R        G + F+SI  G FPS  
Sbjct: 406 ESFNTLRVFQVIAAALLAGLMWWH--SDFRDVQDR-------LGLLFFISIFWGVFPSFN 456

Query: 297 ----FVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFI 352
               F ++  +F +ER +G Y ++++ +   +  +P  +++  I  T+ Y+M  L P   
Sbjct: 457 SVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELG 516

Query: 353 HYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGI----FMLVSGYF--RLP 406
            +L  +L L   V V + L +A+ + +    M     + I  +    F+L  G++  +LP
Sbjct: 517 AFLLTLLVLLGYVLVSQGLGLALGAAI----MDAKKASTIVTVTMLAFVLTGGFYVHKLP 572

Query: 407 NDIPKPVWRYPMSYLSFHYWALQ-------GQYQNDLKGLWFDNQSPDLPKIPGEYVLEN 459
                  W   + Y+S  +++ +       G+ +     L          +   ++V E+
Sbjct: 573 ---SCMAW---IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPH-GSDRASCKFVEED 625

Query: 460 VF-QIDVRRSKWIDLSVIFSMIISYRIIFFVMIK 492
           V  QI    S    +SV+  M + YR++ ++ ++
Sbjct: 626 VAGQI----SPATSVSVLIFMFVGYRLLAYLALR 655

Length = 659

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  177 bits (452), Expect = 2e-47
 Identities = 125/522 (23%), Positives = 206/522 (39%), Gaps = 73/522 (13%)

Query: 18  GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 77
           GL    +T +GN  +RG+SGGER+RVSIA   L   ++   D  T GLDSA A    + +
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATAL---EFI 249

Query: 78  RCLSRDGR----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPC 133
           R L         T + +I+Q S + +ELFD++ +L  G  +YFG    A ++F + GF C
Sbjct: 250 RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKC 309

Query: 134 PALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNL---IDFYQ 190
           P  +  +D FL  + S     +    G  K    T  +       +     L   ID Y 
Sbjct: 310 PDRQTTAD-FLTSLTS--PAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYL 366

Query: 191 TSQHSYAAKEKVE--GISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRL 248
                   KE      ++K       +     SF MQ      R+F+ M  +  +    +
Sbjct: 367 DRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMV 426

Query: 249 VIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRER 308
              +++ + + +++ N+    +   +RG    F   F  F S+    S  E   + ++ R
Sbjct: 427 FGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHR 486

Query: 309 LNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPG----FIHYLFFVLC---- 360
               Y  +A  I + +S +PF I+ + +   I YFMV         F + L   +C    
Sbjct: 487 KYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAM 546

Query: 361 --LYASVAVVE---SLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWR 415
             L+ S+  V    S  M  A+I+    + I TG  I    ML  G+ +         W 
Sbjct: 547 SHLFRSIGAVTKTLSEAMTPAAILL-LALSIYTGFAIPRPSML--GWSK---------WI 594

Query: 416 YPMSYLSFHYWALQGQYQNDLKGLWFDNQ-----SPDLPKIPGEYV-------------- 456
           Y ++ L++ + +L     N+  G  F+             +                   
Sbjct: 595 YYVNPLAYAFESLM---VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYV 651

Query: 457 -----LENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI 493
                L+  FQ      KW +    F +II +  +FF  + I
Sbjct: 652 DGDDYLKLSFQY-YNSHKWRN----FGIIIGF-TVFFFFVYI 687

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  158 bits (402), Expect = 1e-45
 Identities = 59/87 (67%), Positives = 71/87 (81%)

Query: 31  HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 90
            LRG+SGGER+RVSIALE++  P LLFLDEPTSGLDS++A  V   LR L+  GRT+I S
Sbjct: 108 KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167

Query: 91  IHQPSSEVFELFDRLYLLSGGKTVYFG 117
           IHQPSSE+FELFD+L LLS G+ +YFG
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  158 bits (401), Expect = 7e-41
 Identities = 108/446 (24%), Positives = 186/446 (41%), Gaps = 54/446 (12%)

Query: 2    PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-FLDE 60
              SEK   VE  I  + ++  AD V+G     G++  +R+R++I +E++ +P+LL FLDE
Sbjct: 870  SKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDE 928

Query: 61   PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGET 119
            PTSGLDS  A+ + + +R L+  G+ ++ +IHQPS+ +FE FDRL LL  GG+TVYFG+ 
Sbjct: 929  PTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988

Query: 120  SAAF----EFFAQAGFP-CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLE 174
                     +F + G P CP   NP++  L  I +                         
Sbjct: 989  GENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAA------------------------ 1024

Query: 175  KITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQ---ASFLMQAFT 228
                A A ++  + ++ S    A K +++ +           D        AS   Q   
Sbjct: 1025 --PGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKL 1082

Query: 229  LTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSIL-ARGSCASFVFGFVT 287
            +  R+F    R   Y + +  + +   + IG  +  VGT    +     +       F  
Sbjct: 1083 VLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNP 1142

Query: 288  FMSIGGFPSFVEDMKVFQ-RERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVR 346
             +     P FV    +++ RER +  +   AF+       +P+ ++   I   I Y+ V 
Sbjct: 1143 LIQ-QYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVG 1201

Query: 347  L-----HPGFIHYLFFVLCLY--ASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLV 399
                    G +H    +  L          +L   + S  PN     +  + +  + +  
Sbjct: 1202 FYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSF 1261

Query: 400  SGYFRLPNDIPKP-VWRY---PMSYL 421
             G    P+ +P   ++ Y   P +YL
Sbjct: 1262 CGVLAPPSRMPGFWIFMYRCSPFTYL 1287

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score =  143 bits (363), Expect = 1e-39
 Identities = 57/101 (56%), Positives = 73/101 (72%)

Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
           + L+D A T IG   ++GISGGERRRVSIA+++L  P++L LDEPTSGLDS  A  +  T
Sbjct: 126 VLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185

Query: 77  LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           L  L+R  R VI +IHQP S++F LFDR+ LLS G+ VY G
Sbjct: 186 LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score =  130 bits (330), Expect = 2e-35
 Identities = 47/87 (54%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 32  LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 91
           LRG+S  +R+R++I +E+  +P +LFLDEPTSGLDS AA+ + + L+ L+  G+ ++ +I
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165

Query: 92  HQPSSEVFELFDRLYLL-SGGKTVYFG 117
           HQPS+ +FE FDRL LL  GGKTVYFG
Sbjct: 166 HQPSASIFEKFDRLLLLKRGGKTVYFG 192

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  132 bits (333), Expect = 3e-32
 Identities = 120/434 (27%), Positives = 189/434 (43%), Gaps = 55/434 (12%)

Query: 5    EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
            EK   V+  +  + L +  D ++G   + G+S  +R+R++IA+E++  P ++F+DEPTSG
Sbjct: 990  EKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1049

Query: 65   LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSAAF 123
            LD+ AA  V +T+R     GRTV+ +IHQPS ++FE FD L L+  GG+ +Y G      
Sbjct: 1050 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG------ 1103

Query: 124  EFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIK 183
                      P  RN        I   F+ +    K  +K K+  +   LE  + A  +K
Sbjct: 1104 ----------PLGRNSHK-----IIEYFEAIPGVPK--IKEKYNPATWMLEVSSLAAEVK 1146

Query: 184  NLIDF---YQTSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVN-MSR 239
              IDF   Y++S      K  V+ +S         G S   F  Q    T   F + + +
Sbjct: 1147 LGIDFAEHYKSSSLYQRNKALVKELS-----TPPPGASDLYFATQYSQSTWGQFKSCLWK 1201

Query: 240  DFGYYW-------LRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG 292
             +  YW       +R    +   + +GTI+  VGT  ++          ++  V F+ I 
Sbjct: 1202 QWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGIN 1261

Query: 293  GF----PSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLH 348
                  P    +  VF RER  G Y    + I   +  +P++++ T     I Y MV   
Sbjct: 1262 NCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFE 1321

Query: 349  PGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPND 408
                 + +F    + S        M   S+ PN  +  I  A   G+F L SG+F     
Sbjct: 1322 WTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFF----- 1376

Query: 409  IPKP------VWRY 416
            IP+P      VW Y
Sbjct: 1377 IPRPKIPKWWVWYY 1390

Length = 1470

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score =  112 bits (282), Expect = 2e-28
 Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 5/208 (2%)

Query: 224 MQAFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFV 282
            Q   L KR F+   RD       RL+  +++ +  GT++ N+ T    +   G     +
Sbjct: 1   TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPGLLFFSI 60

Query: 283 FGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICY 342
                    G  P F+ +  V +RE  +  Y  +A+V+   L  +P  ++   I   I Y
Sbjct: 61  LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120

Query: 343 FMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGY 402
           FMV L      +  F+L L  +      L + IA++ P+F      G  +    +L+SG+
Sbjct: 121 FMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178

Query: 403 FRLPNDIPKPVWRYPMSYLSFHYWALQG 430
           F   + +  P W   + YL+   +A++ 
Sbjct: 179 FIPVDSM--PGWLQWIYYLNPLTYAIEA 204

Length = 210

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  111 bits (280), Expect = 2e-27
 Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 7/132 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +   E    +E  +   GL+D A+  +     R +SGG ++R+SIAL +L  P LL LDE
Sbjct: 108 LSKEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDE 162

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           PTSGLD  +   + + LR L+++G  T++ S H    E  EL DR+ +L+ GK +  G  
Sbjct: 163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHI-LEEAEELCDRVIILNDGKIIAEGTP 221

Query: 120 SAAFEFFAQAGF 131
               E F   G 
Sbjct: 222 EELKEKFGGKGV 233

Length = 293

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  109 bits (273), Expect = 8e-25
 Identities = 116/493 (23%), Positives = 211/493 (42%), Gaps = 52/493 (10%)

Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
           +GL  C DT++G+  +RGISGG+++RV+    I+   + LF+DE ++GLDS+  +   Q 
Sbjct: 319 LGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTY---QI 375

Query: 77  LRCLSRDGR----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFP 132
           ++CL +       TV+ S+ QP+ E F+LFD + LLS G+ VY G      EFF   GF 
Sbjct: 376 VKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFK 435

Query: 133 CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTS 192
           CP  +  +D FL+ + S  D+ +          +   + P   I+ +E  +    F+   
Sbjct: 436 CPERKGTAD-FLQEVTSKKDQEQY---------WADRNKPYRYISVSEFAERFKSFHVGM 485

Query: 193 QHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTK---------RSFVNMSRDFGY 243
           Q      E      K +         +A+ +   +++ K         + ++ M R+   
Sbjct: 486 QLE---NELSVPFDKSQ-------SHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFV 535

Query: 244 YWLRLVIYVVVTICIGTIYLNVGTGY-NSILARGSCASFVFGFVTFMSIGGFPSF---VE 299
           Y  + V  ++V     T++L       N         + +F  +  M   GF      ++
Sbjct: 536 YVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINM-FNGFAELALMIQ 594

Query: 300 DMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVL 359
            + VF ++R    +    F +   L  +P  I+ + +   I Y+ +   P    +   +L
Sbjct: 595 RLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLL 654

Query: 360 CLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKP-VWRYPM 418
            ++    +   +   IAS+    ++    GA +  +  L+ G+     +IP    W Y +
Sbjct: 655 LVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWV 714

Query: 419 SYLSFHYWALQGQYQNDLKG-LWFDNQSPDLPKIPGEYVLENVFQIDVRRSK---WIDLS 474
           S LS+ + AL     N++    W +  + D     G  VL      DV   K   WI + 
Sbjct: 715 SPLSYGFNALA---VNEMFAPRWMNKMASDNSTRLGTAVLNI---FDVFTDKNWYWIGVG 768

Query: 475 VIFSMIISYRIIF 487
            +    I + ++F
Sbjct: 769 ALLGFTILFNVLF 781

Length = 1470

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score =  100 bits (250), Expect = 3e-24
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 28  GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRT 86
           GN  +RGISGGER+RVSIA  ++ R  +L  D  T GLDS+ A  + + +R ++     T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171

Query: 87  VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
              S++Q S E+++LFD++ +L  G+ +Y+G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 89.8 bits (224), Expect = 1e-20
 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 10  VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 69
           VE  +  +GL+   D       L   SGG+++RV+IA  + M P +L LDEPT+GLD A 
Sbjct: 115 VEEALELVGLEGLRDRSPF--TL---SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG 169

Query: 70  AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112
              + + L+ L  +G+T+I   H     + EL DR+ +L  GK
Sbjct: 170 RRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+R+RV++A  +L+ P LL LDEPTSGLD A+   + + LR L+ +GRTVI   H P
Sbjct: 81  LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140

Query: 95  SSEVFELFDRLYLLSGGK 112
                   DR+ +L  GK
Sbjct: 141 -ELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 7/125 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P  E    V   +  +GL++  D          +SGG+++RV+IA  + M P +L LDE
Sbjct: 110 LPREEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLAMGPEILLLDE 164

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           PT+GLD      + + L+ L  + G+T+I   H     V E  DR+ +L  GK +  G+ 
Sbjct: 165 PTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDP 223

Query: 120 SAAFE 124
           +  F 
Sbjct: 224 AEIFN 228

Length = 235

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 80.9 bits (201), Expect = 9e-18
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 3   WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 62
            + K   V + +  +GL   AD          +SGGER+RV +A  +   P +L LDEPT
Sbjct: 71  LARKIAYVPQALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPT 125

Query: 63  SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           S LD A    + + LR L+R+ G+TV+  +H  +       DR+ LL  G+ V  G
Sbjct: 126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 79.7 bits (198), Expect = 2e-17
 Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG ++R+++A  +L  P LL LDEPTSGLD  +     + LR L ++G+T++ S H   
Sbjct: 97  SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL- 155

Query: 96  SEVFELFDRLYLLSGGK 112
            E   L DR+ +L+ G+
Sbjct: 156 EEAERLCDRVAILNNGR 172

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 75.2 bits (186), Expect = 2e-15
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)

Query: 2   PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
           P SE +  VE  +  +GL D A+          +SGG +R++S+A+ ++  P +L LDEP
Sbjct: 106 PKSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEP 160

Query: 62  TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           TSGLD A+   +   +  + R GR++I + H    E   L DR+ ++S GK    G
Sbjct: 161 TSGLDPASRRAIWDLILEV-RKGRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIG 214

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
             +  V+  +  +GL + AD  IG      +SGG+++RV +A  ++  P LL LDEP +G
Sbjct: 108 ADKAKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAG 162

Query: 65  LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           +D      + + LR L R+G T++   H     V E FDR+ LL+    V  G
Sbjct: 163 VDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLLNRTV-VASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 75.1 bits (185), Expect = 7e-15
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P  E     E  +    L + AD  +G       SGG RRR+ IA  ++ +P +LFLDE
Sbjct: 96  LPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDE 150

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           PT+GLD      +   +R L  +G T++ + H    E  +L DR+ ++  G+ +  G
Sbjct: 151 PTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY-MEEADKLCDRIAIIDHGRIIAEG 206

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 74.1 bits (183), Expect = 7e-15
 Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 11/150 (7%)

Query: 3   WSEK-RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
            S++   +VE  +  +GL+  AD  +       +SGGER+RV IA  +     +L LDEP
Sbjct: 111 PSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEP 165

Query: 62  TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           TS LD A    V + LR L+R+ G TV+  +H   +      D L LL  GK V  G   
Sbjct: 166 TSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPE 224

Query: 121 AAF--EFFAQA-GFPCPALRNPSDHFLRCI 147
                E   +  G     + +P       I
Sbjct: 225 EVLTEENLREVYGVDADVIEDPDSGKPVVI 254

Length = 258

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 72.2 bits (178), Expect = 9e-15
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 3/89 (3%)

Query: 25  TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRD 83
           TV+ N  L G+SGG+++RV++A  + M P +L LDEPTS LD      V   L+ L ++ 
Sbjct: 92  TVLENIAL-GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQL 150

Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGK 112
           G TV+   H    E   L DR+ +L  GK
Sbjct: 151 GITVVLVTHDL-DEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 71.6 bits (177), Expect = 1e-14
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+R+R++IA  +L  P +L LDE TS LD      + + LR L   G+TVI   H+ 
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRL 155

Query: 95  SSEVFELFDRLYLLSGGK 112
           S+      DR+ +L  G+
Sbjct: 156 ST--IRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 71.8 bits (177), Expect = 3e-14
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 15/126 (11%)

Query: 1   MPWSEKRTLVERTI-------IEM-GLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 52
            P  E   L E  I       +E  GL+   D          +SGG ++RV++A  + + 
Sbjct: 100 FPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALD 154

Query: 53  PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 111
           P LL  DEPT+GLD  A+  +   +R L ++ G T I   H      F + DR+ +L  G
Sbjct: 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD-LDTAFAIADRIAVLYDG 213

Query: 112 KTVYFG 117
           K V  G
Sbjct: 214 KIVAEG 219

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P  E +  V+  +  + L D A   IG      +SGG RRRV IA  ++  P +L +DE
Sbjct: 102 IPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDE 156

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           PT+GLD          L  L  D R VI S H    +V  L +++ +L+ GK V+ G
Sbjct: 157 PTAGLDPEERIRFRNLLSELGED-RIVILSTHI-VEDVESLCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 70.9 bits (174), Expect = 8e-14
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           + R         + L +  D  +G       S G +++V+IA  ++  P +L LDEPTSG
Sbjct: 111 KARI--AELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSG 163

Query: 65  LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           LD          ++ L  +GR VI S H    EV  L DR+ +L  G+ V  G
Sbjct: 164 LDIRTRRKFHDFIKQLKNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEG 215

Length = 245

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 69.9 bits (172), Expect = 9e-14
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 6/106 (5%)

Query: 10  VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 69
           ++  +  +GL+D A   +  + L     G ++R+ IAL +L  P LL LDEPT+GLD   
Sbjct: 107 IDEVLDVVGLKDSAKKKVKGFSL-----GMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161

Query: 70  AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 115
              + + +  L   G TV+ S H   SE+ ++ DR+ +++ GK + 
Sbjct: 162 IKELRELILSLRDQGITVLISSHL-LSEIQKVADRIGIINKGKLIE 206

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 7/117 (5%)

Query: 2   PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
           P +E+R  ++  +  +GL + AD ++  +     SGG RRR+ IA  ++ RP +LFLDEP
Sbjct: 104 PGAERRERIDELLDFVGLLEAADRLVKTY-----SGGMRRRLEIARSLVHRPEVLFLDEP 158

Query: 62  TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           T GLD      V + +  L  + G T++ + H    E  +L DR+ ++  G+ +  G
Sbjct: 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY-MEEAEQLCDRVAIIDHGRIIAEG 214

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 69.4 bits (171), Expect = 2e-13
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 94
           SGG+++RV+IA  +   P+++  DEPT  LDS     V + LR L+++ G T++   H P
Sbjct: 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201

Query: 95  SSEVFELFDRLYLLSGGK 112
             E+ E  DR+  L  GK
Sbjct: 202 --ELAEYADRIIELRDGK 217

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 71.2 bits (175), Expect = 4e-13
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 6   KRTLVERTIIEMGLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 58
               +   +   GL +         DT IG     G+SGG+ +R+++A   L    LL L
Sbjct: 424 SDAEIREALERAGLDEFVAALPQGLDTPIGE-GGAGLSGGQAQRLALARAFLRDAPLLLL 482

Query: 59  DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 108
           DEPT+ LD+     V + LR L++ GRTV+   H+    +  L DR+ +L
Sbjct: 483 DEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRL--ALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 69.1 bits (169), Expect = 5e-13
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 9   LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 68
           +V+R +    L   AD  +       +SGGER+RV +A  +   P+LL LDEPT+ LD  
Sbjct: 117 VVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171

Query: 69  AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           A       +R L+  G TV+A++H  +       D + +L GG+ V  G
Sbjct: 172 AQLETLALVRELAATGVTVVAALHDLNLAA-SYCDHVVVLDGGRVVAAG 219

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +   E R  ++  +  + L + A+  +       +S G +++V     ++  P LL LDE
Sbjct: 100 LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDE 154

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           P SGLD      +   +R L+R G+TVI S HQ    V EL DR+ LL+ G+ V +G
Sbjct: 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 67.4 bits (165), Expect = 6e-13
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           E    V   +  +G     +      H   +SGGE++RV+IA  + MRP +L LDEPT+G
Sbjct: 103 EVERRVREALTAVGASGLRERPT---HC--LSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157

Query: 65  LDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           LD A    +   LR L  +G TV+ S H
Sbjct: 158 LDPAGREQMLAILRRLRAEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.4 bits (168), Expect = 6e-13
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 10  VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 69
           V+  +  +G++D  D  IG   L   SGG+++RV +A  +   P LL LDEP +G+D A 
Sbjct: 120 VDEALERVGMEDLRDRQIG--EL---SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174

Query: 70  AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
              +   L+ L ++G+TV+   H     V   FDR+  L+    +  G       
Sbjct: 175 QKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLNRHL-IASGPPEEVLT 227

Length = 254

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 68.0 bits (167), Expect = 7e-13
 Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP 94
           SGG+++RV+IA  ++ +P+L+  DEP + LD A++  V   L+ ++R +G TVI S+HQ 
Sbjct: 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSA 121
                E  DR+  L  G+ V+ G  + 
Sbjct: 206 DL-AREYADRIVGLKDGRIVFDGPPAE 231

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 67.6 bits (166), Expect = 8e-13
 Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           RG+SGG+R+ V++A  +L  P +L LDEPTS +D  +   + + LR L  D +T+I   H
Sbjct: 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITH 197

Query: 93  QPSSEVFELFDRLYLLSGGKTV 114
           +PS  + +L DR+ ++  G+ V
Sbjct: 198 RPS--LLDLVDRIIVMDSGRIV 217

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 66.7 bits (164), Expect = 2e-12
 Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 2   PWSEKRTLVERT--IIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 58
              E+R   ER   ++E +GL D AD   G      +S G++RR+ IA  +   P+LL L
Sbjct: 113 ARREEREARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLL 167

Query: 59  DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112
           DEP +GL+      + + +R L   G TV+   H     V  L DR+ +L  G+
Sbjct: 168 DEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQGR 220

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 94
           SGG+++RV+IA  ++  P+++  DEPT  LDS  A  V + LR L+++ G+T+I   H P
Sbjct: 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203

Query: 95  SSEVFELFDRLYLLSGGK 112
             E+ +  DR+  L  GK
Sbjct: 204 --ELAKYADRVIELKDGK 219

Length = 226

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 6/94 (6%)

Query: 31  HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 90
           HL   SGG+++RV+IA  + M+P ++ LDEPTSGLD   A  + + L  L+++G T+I S
Sbjct: 137 HL---SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIIS 193

Query: 91  IHQPSSEVFELF-DRLYLLSGGKTVYFGETSAAF 123
            H    ++  ++ D++Y++S GK +  G     F
Sbjct: 194 THD--VDLVPVYADKVYVMSDGKIIKEGTPKEVF 225

Length = 275

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 65.3 bits (160), Expect = 6e-12
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 5   EKRTLVER--TIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
           E+R   ER   ++E +GL + AD   GN     +S G++RR+ IA  +  +P+LL LDEP
Sbjct: 122 EEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEP 176

Query: 62  TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112
            +GL+      + + +R L   G   I  I      V  L DR+ +L+ G+
Sbjct: 177 AAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227

Length = 250

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 65.3 bits (160), Expect = 7e-12
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQ 93
           +SGG R+RV++A  I + P LLFLDEPTSGLD  +A              G TVI   H 
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205

Query: 94  PSSEVFELFDRLYLLSGGKTVYFG 117
             S +  + DR+ +L+ GK +  G
Sbjct: 206 LDS-LLTIADRVAVLADGKVIAEG 228

Length = 263

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 67.3 bits (165), Expect = 9e-12
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
           DTVIG     G+SGG+ +R+++A  +L    LL LDEPT+ LD+     + Q L+ L++ 
Sbjct: 447 DTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505

Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
            +TV+   H+   E     DR+ +L  G+ V
Sbjct: 506 -KTVLVITHRL--EDAADADRIVVLDNGRLV 533

Length = 559

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +  SE+R +VE  I  +GL + AD   G      +SGG ++RV+IA  + +RP++L LDE
Sbjct: 86  LSKSERRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDE 140

Query: 61  PTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
           P   LD+        + ++       TV+   H     +  L DR+ +L+ G     G+
Sbjct: 141 PFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALL-LSDRVVMLTNGPAANIGQ 198

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           G S G R++V+IA  ++  P +L LDEPT+GLD  A   + + +R L   G+ ++ S H 
Sbjct: 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI 195

Query: 94  PSSEVFELFDRLYLLSGGKTVYFG 117
              EV  L DR+ +L  G+ VY G
Sbjct: 196 -MQEVERLCDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
            E R  V+  +  +GL       + N +   +SGGE++RV++A  +  +P LL LDEP S
Sbjct: 106 REDRISVDELLDLLGLDH-----LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160

Query: 64  GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
            LD A    +   L+ + ++    VI   H   SE   L DR+ ++  G+  Y G
Sbjct: 161 ALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 94
           SGG+R+RV+IA  + + P+LL  DEPTS LD +    +   L+ L  + G T++   H  
Sbjct: 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206

Query: 95  SSEVFELFDRLYLLSGGKTVYFG 117
              V ++ DR+ ++  GK V  G
Sbjct: 207 GV-VAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 18/123 (14%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +  +E R  +   +  +GL + AD  +     R ++GG RRRV IA  +L RP LL LDE
Sbjct: 104 LSRAEARARIAELLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDE 158

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIH-----QPSSEVFELFDRLYLLSGGKTV 114
           PT GLD A+   +T  +R L+RD G +V+ + H     +         DRL +L  G+ +
Sbjct: 159 PTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGRVL 211

Query: 115 YFG 117
             G
Sbjct: 212 ADG 214

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 66.4 bits (163), Expect = 2e-11
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           R +SGG+R+ V++A  +L  P +L LDEPTS +D+ +       L+     G+T++   H
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTH 658

Query: 93  QPSSEVFELFDRLYLLSGGKTV 114
           + S  + +L DR+ ++  G+ V
Sbjct: 659 RTS--LLDLVDRIIVMDNGRIV 678

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 62.4 bits (153), Expect = 2e-11
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG +++V +A  +   PR+L LDEPT G+D  A   + + +R L+  G+ V+      S
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI----S 161

Query: 96  S---EVFELFDRLYLLSGGK 112
           S   E+  L DR+ ++  G+
Sbjct: 162 SELDELLGLCDRILVMYEGR 181

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF----FVTQTLRCLSRDG 84
            W +R +S G+R R  +A  +L  P++LFLDEPT GLD  A      F+ +         
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE---ERQ 207

Query: 85  RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 127
            TV+ + H    ++  L DR+ L+  G+ V+ G  +   E F 
Sbjct: 208 ATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249

Length = 325

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           E R  VE  +  + L+  AD      +   +SGG+R+RV++A  + + P++L LDEP   
Sbjct: 113 EIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGA 167

Query: 65  LDSAAAFFVTQTLR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
           LD+     + + LR    R G T +   H    E  EL DR+ +L+ G+    G     +
Sbjct: 168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVY 226

Query: 124 EF 125
           + 
Sbjct: 227 DH 228

Length = 345

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 64.9 bits (159), Expect = 6e-11
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
           DT +G      +SGG+R+R+++A  +L +P++L LDE TS LD      + Q L  +   
Sbjct: 600 DTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQ 657

Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
           GRTVI   H+ S       DR+ +L  GK V
Sbjct: 658 GRTVIIIAHRLS--TIRSADRIIVLDQGKIV 686

Length = 709

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +   E     E  +  +GL D  D          +SGG+++RV+IA  +L +P+LL LDE
Sbjct: 61  LRDKEADARAEEALERVGLPDFLDREPV----GTLSGGQKQRVAIARALLKKPKLLLLDE 116

Query: 61  PTS 63
           PT+
Sbjct: 117 PTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 17  MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
           M L +  DTVIG    RG+  SGG+R+R++IA  +L  P +L LDE TS LD+ +   V 
Sbjct: 122 MELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178

Query: 75  QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
             L  L ++ RT     H+ S+   E  DR+ +L  GK V
Sbjct: 179 AALERLMKN-RTTFVIAHRLST--IENADRIVVLEDGKIV 215

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.5 bits (152), Expect = 8e-11
 Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 10/131 (7%)

Query: 10  VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 69
           V   +  +GL++  D V    HL   SGGE++RV+IA  I M P++L LDEPT+GLD   
Sbjct: 118 VSSALHMLGLEELRDRV--PHHL---SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172

Query: 70  AFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF---EF 125
              +   L  L    G TVI S HQ    V E+ D +Y++  G+ V +G     F   + 
Sbjct: 173 VKELIDFLNDLPETYGMTVIFSTHQ-LDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDL 231

Query: 126 FAQAGFPCPAL 136
            A+     P+L
Sbjct: 232 LARVHLDLPSL 242

Length = 277

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 62.6 bits (152), Expect = 9e-11
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 25/151 (16%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG +RR+++A  ++  P+LL LDEPT+GLD  A   + + LR L   G+T++ + H  
Sbjct: 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF- 194

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALR----NP----------- 139
             E   L DRL +L  G+ +  G   A  +   Q G  C  +     +P           
Sbjct: 195 MEEAERLCDRLCVLESGRKIAEGRPHALID--EQIG--CNVIEIYGGDPDELRELIRPYA 250

Query: 140 -----SDHFLRCINSDFDKVKATLKGSMKLK 165
                S   L C   D ++V+  L+G   L+
Sbjct: 251 RRIEVSGETLFCYARDPEQVRVQLRGRTDLR 281

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 30  WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 89
            H   +SGG+++R++IA  +L    LL  DEPTSGLD      V + +R L+  G+ VI 
Sbjct: 122 RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV 181

Query: 90  SIHQPSSEVFELF----DRLYLLSGGKTV 114
             H      +E      DR+ LL+ G  V
Sbjct: 182 ITHD-----YEFLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 17  MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
           M   D  DT++G    RG  +SGGE++RV+IA  IL  P +L LDE TS LD+     + 
Sbjct: 121 MRFPDGYDTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177

Query: 75  QTLRCLSRDGRTVIASIHQPSS 96
             LR +S+ GRT I   H+ S+
Sbjct: 178 AALRDVSK-GRTTIVIAHRLST 198

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 8/120 (6%)

Query: 5   EKRTLVERTIIEMGLQDCA--DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 62
            K        +E  L+  A  D V    H  G+SGG+++R+ +A  +   P +L LDEPT
Sbjct: 110 IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPT 169

Query: 63  SGLDSAAAFFVTQTLRCLSRDGRTVIAS--IHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           S LD  +   + + +  L ++   VI +  + Q       + DR   L  G+ V FG T 
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQ----AARVADRTAFLLNGRLVEFGPTE 225

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 25/152 (16%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG +RR+++A  ++  P+LL LDEPT+GLD  A   + + LR L   G+T++ + H  
Sbjct: 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF- 231

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALR----NP----------- 139
             E   L DRL +L  G+ +  G   A  +     G  C  +     +P           
Sbjct: 232 MEEAERLCDRLCVLEAGRKIAEGRPHALID--EHIG--CQVIEIYGGDPHELSSLVKPYA 287

Query: 140 -----SDHFLRCINSDFDKVKATLKGSMKLKF 166
                S   L C   D ++V+  L+G   L+ 
Sbjct: 288 RRIEVSGETLFCYAPDPEQVRVQLRGRAGLRL 319

Length = 340

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 21  DCADTVIGNWHLRG-----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 75
           D A T++   H R      +S G+++RV+IA  ++++ R L LDEPT+GLD A    +  
Sbjct: 118 DEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177

Query: 76  TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFP 132
            +R +   G  VI S H     ++E+ D +Y+L  G+ +  G     F   E   QAG  
Sbjct: 178 IIRRIVAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLT 236

Query: 133 CPAL 136
            P L
Sbjct: 237 QPWL 240

Length = 271

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           R +SGG+++RV+IA  + MRP ++  DEPTS LD      V  T+R L+++ RT++   H
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202

Query: 93  QPSSEVF--ELFDRLYLLSGGKTVYFGETSAAF 123
           + S   F  ++ DR   +  G+ V  G   A F
Sbjct: 203 EMS---FARDVADRAIFMDQGRIVEQGPAKALF 232

Length = 250

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
            EKR   +  + ++GL       I       +SGGE++RV++A  IL  P L+  DEPT 
Sbjct: 109 KEKREKKKEALEKVGLNLKLKQKIYE-----LSGGEQQRVALARAILKPPPLILADEPTG 163

Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 104
            LD      V   L  L+ +G+T+I   H P  EV +  DR
Sbjct: 164 SLDPKNRDEVLDLLLELNDEGKTIIIVTHDP--EVAKQADR 202

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 62.9 bits (154), Expect = 2e-10
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 3   WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 62
               R      I E  ++  +         R +SGG ++++ +A E+  RP LL   +PT
Sbjct: 376 RRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPT 431

Query: 63  SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122
            GLD  A  F+ + L  L   G+ V+  I +   E+ EL DR+ ++  G+ V       A
Sbjct: 432 RGLDVGAIEFIHERLLELRDAGKAVLL-ISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490

Length = 501

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR-LLFLDEPTS 63
           E+R  VE    ++GL      + G      +SGG+R+RV++A   L+R + +L LDEP S
Sbjct: 105 EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALA-RCLVREQPILLLDEPFS 158

Query: 64  GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122
            LD A    +   +  L  +   T++   H P  +   + DR+  L  G+    G T   
Sbjct: 159 ALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQ-- 215

Query: 123 FEFFAQAG 130
            E  +   
Sbjct: 216 -ELLSGKA 222

Length = 231

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 94
           SGG R+RV IA+ + + P+LL  DEPT+ LD      +   L+ L R+ G  +I   H  
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL 214

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
              V E+ DR+ ++  G+ V  G     F+
Sbjct: 215 GV-VAEIADRVAVMYAGRIVEEGPVEEIFK 243

Length = 316

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQP 94
           SGG+++RV+IA  ++ +P+++  DEP + LD  +A  V   L+ ++  DG TVI ++HQ 
Sbjct: 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV 208

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETS 120
                +  DR+  L  G+ V+ G  S
Sbjct: 209 DL-AKKYADRIIGLKAGRIVFDGPAS 233

Length = 258

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 59.8 bits (146), Expect = 3e-10
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P +E R  V   +  +GL+   +          +SGG+++RV++A  +   P LL LDE
Sbjct: 102 VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDE 156

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           P S LD+     + + L+ L R+ G T I   H    E   L DR+ +++ G+ V  G
Sbjct: 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 59.8 bits (146), Expect = 4e-10
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ---TLRCLSRDGRTVIASIH 92
           SGGE++ ++IA  ++ RP+LL LDEP+ GL   A   V +    ++ L ++G   I  + 
Sbjct: 138 SGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRKEGGMTILLVE 194

Query: 93  QPSSEVFELFDRLYLLSGGKTVYFGETSA 121
           Q +    E+ DR Y+L  G+ V  G  + 
Sbjct: 195 QNARFALEIADRGYVLENGRIVLSGTAAE 223

Length = 237

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
            +SGG++RRV++A  + M P  L  DEPT+GLD      + +    L++ G+T+I   H 
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGET 119
             + V E   R      GK +  G+T
Sbjct: 225 LDN-VLEWTKRTIFFKDGKIIKDGDT 249

Length = 305

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 61.9 bits (151), Expect = 5e-10
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
           + L    DT IG      +SGG+R+R+++A  +   P L+ LDEP S LDS     +   
Sbjct: 456 LRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514

Query: 77  LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           +      G TV+   H+PS       D++ +L  G+   FG   
Sbjct: 515 ILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPRE 556

Length = 580

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           G SGGE++R  I   +L+ P L  LDEP SGLD  A   V + +  L  +G++V+   H 
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163

Query: 94  PSSEVFELF--DRLYLLSGGKTV 114
               + +    DR+++L  G+ V
Sbjct: 164 Q--RLLDYIKPDRVHVLYDGRIV 184

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 28/92 (30%), Positives = 46/92 (50%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG+R+R++IA  ++  P+LL LDEPTS LD +    +   L  L ++       I    
Sbjct: 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL 202

Query: 96  SEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 127
           + V  + DR+ ++  G+ V  G T       +
Sbjct: 203 ALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS 234

Length = 252

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 57.8 bits (141), Expect = 6e-10
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +S GER+ V IA  +    RLL LDEPT+ L  A    + + +R L   G  VI   H+ 
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142

Query: 95  SSEVFELFDRLYLLSGGKTV 114
             EVFE+ DR+ +L  G+ V
Sbjct: 143 -DEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.7 bits (144), Expect = 8e-10
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+ RRV+IA  + M P +L LDEPT+GLD  A   + Q    + + G+TV+   H  
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL- 203

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
             +V +  D +YLL  G  +  G  S  F+
Sbjct: 204 MDDVADYADYVYLLEKGHIISCGTPSDVFQ 233

Length = 288

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 10  VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 69
           V   + ++GL+  AD          +SGGE++RV+IA  I+  P LL  DEPT  LD   
Sbjct: 118 VGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172

Query: 70  AFFVTQTLRCLSRDGRTVIASIHQPS 95
           +  +   L+ L++ G TVI + H  S
Sbjct: 173 SERILDLLKRLNKRGTTVIVATHDLS 198

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 59.0 bits (143), Expect = 8e-10
 Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
           DT++G     G+SGG+R+R++IA  ++  PR+L  DE TS LD  +   + + +  +   
Sbjct: 129 DTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A 186

Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
           GRTVI   H+ S+   +  DR+ ++  G+ V
Sbjct: 187 GRTVIIIAHRLST--VKNADRIIVMEKGRIV 215

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 61.1 bits (149), Expect = 8e-10
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 94
           SGG R+RV IA+ + ++P+LL  DEPT+ LD      +   L+ L R+ G  V+   H  
Sbjct: 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL 215

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
              V EL DR+ ++  G+ V  G T     
Sbjct: 216 GV-VAELADRVVVMYKGEIVETGPTEEILS 244

Length = 539

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 57.6 bits (140), Expect = 8e-10
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG+R+R+ +A  +   PR+L LDEP S LD      + Q +  L   G T I   H+P 
Sbjct: 98  SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP- 156

Query: 96  SEVFELFDRLYLLSGGK 112
            E     DR+ +L  G+
Sbjct: 157 -ETLASADRILVLEDGR 172

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 59.1 bits (144), Expect = 8e-10
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 17  MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
           M L D  DT++G    RG  +SGG+++R++IA  +L  P++L LDE TS LD+ +   V 
Sbjct: 123 MSLPDGYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179

Query: 75  QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
           + L    + GRT I   H+ S+      D + +L  G+ V
Sbjct: 180 EALDRAMK-GRTTIVIAHRLST--IRNADLIAVLQNGQVV 216

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 58.6 bits (143), Expect = 8e-10
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGGE++ ++IA  ++ RP+LL LDEP+ GL       + + +R L  +G T++  + Q +
Sbjct: 134 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL-VEQNA 192

Query: 96  SEVFELFDRLYLLSGGKTVYFGETSA 121
               E+ DR Y+L  G+ V  G  + 
Sbjct: 193 RFALEIADRAYVLERGRVVLEGTAAE 218

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 17/117 (14%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
              +E R   +  +  +GL    D      +   +SGG R+RV+IA  +  RP+LL LDE
Sbjct: 102 KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALATRPKLLLLDE 156

Query: 61  PTSGLDSAAAFFVT------QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111
           P   LD+     +T      + LR      +TV+   H    E   L DR+ +LS  
Sbjct: 157 PFGALDA-----LTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207

Length = 248

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M  +E        + ++GL D AD          +SGG+++RV+IA  + M P+++  DE
Sbjct: 107 MSKAEAEERALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARALAMNPKVMLFDE 161

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF--ELFDRLYLLSGGK 112
           PTS LD      V   ++ L+ +G T++   H+     F  E+ DR+  +  G+
Sbjct: 162 PTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG---FAREVADRVIFMDDGR 212

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           E+   +E  + E  +     +         +SGGERRRV IA  +   P+ L LDEP +G
Sbjct: 109 EREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAG 163

Query: 65  LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           +D  A   + + ++ L   G  V+ + H    E   + DR Y++  GK +  G
Sbjct: 164 VDPIAVQDIQKIIKILKDRGIGVLITDHN-VRETLSITDRAYIIYEGKVLAEG 215

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG+++RV+IA  + M P+++  DEPTS LD      V   ++ L+ +G T+I   H+  
Sbjct: 138 SGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197

Query: 96  SEVF--ELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFP 132
              F  E+ DR+  +  GK +   E     EFF      
Sbjct: 198 ---FAREVADRVIFMDQGKII---EEGPPEEFFDNPKSE 230

Length = 240

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 18  GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 77
           GL + AD  +G      +SGG+R+RV +A  +  RP +L LDEP +GLD      +T+  
Sbjct: 102 GLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF 156

Query: 78  RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110
             L+  G  ++ + H  +  +    DR+ LL+G
Sbjct: 157 IELAGAGTAILMTTHDLAQAM-ATCDRVVLLNG 188

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGGE++R++ A  +L +P+ +FLDE TS LD  +   + Q L+     G TVI+  H+PS
Sbjct: 93  SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRPS 149

Query: 96  SEVFELFDRLYLLSG 110
              F   DR+  L G
Sbjct: 150 LWKF--HDRVLDLDG 162

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 25/90 (27%), Positives = 50/90 (55%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE++RV+IA  +++ P++L LDEP S LD      + + L+ + ++    +  +   
Sbjct: 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
             E + L D++ ++  GK +  G+    F+
Sbjct: 190 FEEAWALADKVAIMLNGKLIQVGKPEEVFK 219

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           G+SGG++RRV+IA  + ++P +L  DEPT+GLD      + Q +     + +TV    H 
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235

Query: 94  PSSEVFELFDRLYLLSGGKTVYFG 117
               V E+ D + ++  GK +  G
Sbjct: 236 -MEHVLEVADEVIVMDKGKILKTG 258

Length = 320

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+ RRV+IA  + M P++L LDEPT+GLD      +    + L + G T++   H  
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL- 204

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
             +V    D +Y+L  GK V  G+    F+
Sbjct: 205 MDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234

Length = 280

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQ 93
           +SGG+++RV+IA  +  +P L+  DEP + LD   +  V   L+ +++ DG TVI ++HQ
Sbjct: 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSA 121
                 +  DR+  L  G+ V+ G  S 
Sbjct: 206 -VDLAKKYADRIVGLKAGEIVFDGAPSE 232

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +  +++R +  + +  +GL+      I  W L   SGG R+RV IA  + + P+LL LDE
Sbjct: 104 IEKAQRREIAHQMLALVGLEGAEHKYI--WQL---SGGMRQRVGIARALAVEPQLLLLDE 158

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 111
           P   LD+     + + L  L ++ G+ V+   H     +F L  RL +LS G
Sbjct: 159 PFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF-LATRLVVLSPG 209

Length = 259

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
             L D  DT++G      +SGG+R+R++IA  +L  P +L LDE TS LD+     +   
Sbjct: 449 ANLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDA 507

Query: 77  LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           L+ L   GRT +   H+ S+   +  DR+ +L  G+ V  G
Sbjct: 508 LKKL-LKGRTTLIIAHRLSTI--KNADRIIVLDNGRIVERG 545

Length = 567

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 58.4 bits (142), Expect = 5e-09
 Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 8/73 (10%)

Query: 21  DCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           D  DTV+G    RG  +SGGER+R++IA  +L  P +L LDE TS LD      V   L 
Sbjct: 459 DGYDTVVGE---RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515

Query: 79  CLSRDGRT--VIA 89
            L + GRT  +IA
Sbjct: 516 ELMK-GRTTFIIA 527

Length = 588

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 22/128 (17%)

Query: 1   MPWSEKRTLVE-RTIIE--MGLQDCADTVIGNWHLRG-----ISGGERRRVSIA------ 46
           +P    R   E   I    +   D +        L G     +SGGE++RV +A      
Sbjct: 101 IPHRSGREPEEDERIAAQALAATDLS-------GLAGRDYRTLSGGEQQRVQLARVLAQL 153

Query: 47  LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 106
              +   R LFLDEPTS LD A      +  R L+R+G  V+A +H  +    +  DR+ 
Sbjct: 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAA-QYADRIV 212

Query: 107 LLSGGKTV 114
           LL  G+ +
Sbjct: 213 LLHQGRVI 220

Length = 259

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 8/113 (7%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           + + E R      +  +GL D  D     ++   +SGG+++RV+IA  ++ RP+L+  DE
Sbjct: 113 LSYQEARERARAMLEAVGLGDHLD-----YYPHNLSGGQKQRVAIARALVHRPKLVLADE 167

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 112
           PT+ LDS +   V + ++ L+R+ G T++   H     + ++ DR+  +  GK
Sbjct: 168 PTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN--RILDVADRIVHMEDGK 218

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 15/129 (11%)

Query: 2   PW--------SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 53
           PW        +  R  VE  I  +GL+  A  ++ +     +SGGER+R  IA+ +    
Sbjct: 112 PWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166

Query: 54  RLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 112
           R L LDEPTS LD A    V   +  LS++ G TVIA +H  +       D L  L GG+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA-RYCDYLVALRGGE 225

Query: 113 TVYFGETSA 121
            +  G  + 
Sbjct: 226 MIAQGTPAE 234

Length = 265

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 93
           +SGG++RRV+IA  + M P++L LDEPT+GLD      +   ++ L ++   T+I   H 
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH- 203

Query: 94  PSSE-VFELFDRLYLLSGGKTVYFGETSAAF 123
            S E V +L DR+ +++ GK    G     F
Sbjct: 204 -SMEDVAKLADRIIVMNKGKCELQGTPREVF 233

Length = 287

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 28/90 (31%), Positives = 41/90 (45%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE++RV+I   +L  P LL +DEP + LD      +   L  L  +    I  +   
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS 188

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
             EV  L DR+ +L  GK    G     + 
Sbjct: 189 LDEVLRLADRVVVLENGKVKASGPLEEVWG 218

Length = 352

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 57.6 bits (140), Expect = 8e-09
 Identities = 31/90 (34%), Positives = 46/90 (51%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG+R+RV+IA  + + P+LL LDEP S LD +    V   L+ L  +       I    
Sbjct: 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL 490

Query: 96  SEVFELFDRLYLLSGGKTVYFGETSAAFEF 125
           + V  + DR+ ++  G+ V  G T   FE 
Sbjct: 491 AVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520

Length = 539

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 58.5 bits (141), Expect = 8e-09
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 13/183 (7%)

Query: 1    MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
            +P  E   +   +I  +GL   AD + G +     SGG +R++S A+ ++  P L+ LDE
Sbjct: 2042 VPAEEIEKVANWSIQSLGLSLYADRLAGTY-----SGGNKRKLSTAIALIGCPPLVLLDE 2096

Query: 61   PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
            PT+G+D  A   +  T+  + R+GR V+ + H    E   L  RL ++  G     G   
Sbjct: 2097 PTTGMDPQARRMLWNTIVSIIREGRAVVLTSHS-MEECEALCTRLAIMVKGAFQCLGTIQ 2155

Query: 121  AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMK-------LKFETSDDPL 173
                 F         +++P D  L  +N      +    GS++       L+F+ S   L
Sbjct: 2156 HLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSSSL 2215

Query: 174  EKI 176
             +I
Sbjct: 2216 ARI 2218

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 18  GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 77
            L D  DTV+G      +SGGER+R+++A  +L    +L LDEPT  LD+  A  + + L
Sbjct: 456 ALPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL 514

Query: 78  RCLSRDGRTVIASIHQP 94
                 GRTV+   H  
Sbjct: 515 LAAL-SGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 56.7 bits (137), Expect = 9e-09
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 15/110 (13%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 93
           +SGG+++RV++A  ++ +P++L LDEP S LD      +   L+ +    G T +   H 
Sbjct: 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHF 143
              E   + DR+ ++  GK              AQ G P      P++ F
Sbjct: 161 -QEEAMTMSDRIAIMRKGK-------------IAQIGTPEEIYEEPANLF 196

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 56.7 bits (137), Expect = 9e-09
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 32  LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 91
           +  +SGG +RR+++A  ++  P +L LDEPT+GLD  A   + + LR L   G+T++ + 
Sbjct: 136 VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTT 195

Query: 92  HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
           H    E   L DRL ++  G+ +  G   A  E
Sbjct: 196 HF-MEEAERLCDRLCVIEEGRKIAEGAPHALIE 227

Length = 306

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGER+RV IA+ +L RP LL  DEPT+ LD +    + Q LR L ++    +  I   
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFP 132
            S V +L DR+ ++  G+ V   E + A   F+    P
Sbjct: 217 LSIVRKLADRVAVMQNGRCV---EQNRAATLFSAPTHP 251

Length = 529

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           +SGGE++RV+IA  I+ +P +L  DEPT  LD   ++ + +    ++R G TV+ + H
Sbjct: 138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195

Length = 223

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 2   PWSEK-RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
            W+E  R  VER +   G+   AD  + +     +SGGER+RV +A  +     +L LDE
Sbjct: 111 TWTETDRAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQATPVLLLDE 165

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           PT+ LD        + +R L  DG+T +A+IH
Sbjct: 166 PTASLDINHQVRTLELVRRLVDDGKTAVAAIH 197

Length = 402

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 3   WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 62
           + E  T  +    +  L+      + +     +S GE+RRV IA  ++  P LL LDEP 
Sbjct: 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199

Query: 63  SGLDSAAAFFVTQTLRCL--SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
            GLD  A   +   L  L  S     ++   H    E+   F    LL  G+ V  G+ 
Sbjct: 200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGKL 257

Length = 257

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           G SGGE++R  I   +L+ P+L  LDEP SGLD  A   V + +  L  +GR V+   H 
Sbjct: 144 GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY 203

Query: 94  PSSEVFELF--DRLYLLSGGKTVYFGETSAAFEFFAQAGFPC 133
               + +    D++++L  G+ V  G+   A E   + G+  
Sbjct: 204 Q--RLLDYIKPDKVHVLYDGRIVKSGDPELA-EELEEKGYDW 242

Length = 251

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE++RV+I   +L  PRLL +DEP + LD    + +   L  L  +    I  +   
Sbjct: 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191

Query: 95  SSEVFELFDRLYLLSGGKTVYFG 117
             EV  L DR+ +L  G+    G
Sbjct: 192 LQEVLRLADRVVVLEDGRVAAAG 214

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 23/119 (19%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHL-RGISGGERRRVSIALEILMRPRLLFLD 59
           +P +E R   E  +  +GL    +           +SGG R+RV++A  + + P +L LD
Sbjct: 103 VPKAEARERAEELLELVGLSGFEN------AYPHQLSGGMRQRVALARALAVDPDVLLLD 156

Query: 60  EPTSGLDSAAAFFVTQT--------LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110
           EP S LD+        T        L      G+TV+   H    E   L DR+ +LS 
Sbjct: 157 EPFSALDA-------LTREQLQEELLDIWRETGKTVLLVTHD-IDEAVFLADRVVVLSA 207

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIH 92
           +SGG ++R++IA  I + P +L LDEP S LD+     + + +  L  +    T++   H
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197

Query: 93  QPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
               +   L D+  ++  G+    GE  A ++
Sbjct: 198 D-QDDALTLADKAGIMKDGRLAAHGEPQALYD 228

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 12/117 (10%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR-PRLLFLD 59
           +   + R  ++      GL    D  + +     +S GE++RV I L+ L R  RLL LD
Sbjct: 112 IDRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEI-LKALYRGARLLILD 165

Query: 60  EPTSGL--DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
           EPT+ L    A   F  + LR L+ +G+T+I   H+   EV  + DR+ +L  GK V
Sbjct: 166 EPTAVLTPQEADELF--EILRRLAAEGKTIIFITHK-LKEVMAIADRVTVLRRGKVV 219

Length = 501

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 54.8 bits (133), Expect = 3e-08
 Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 29/131 (22%)

Query: 1   MPWSEKRTLVERTIIE-MGLQDCADTVIGNWHLRG-----ISGGERRRVSIA------LE 48
            P    R   +  +   +   D A       HL G     +SGGE++RV +A       E
Sbjct: 102 APHGLSRAEDDALVAAALAQVDLA-------HLAGRDYPQLSGGEQQRVQLARVLAQLWE 154

Query: 49  ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIH---QPSSEVFELF-D 103
               PR L LDEPTS LD A    V +  R L+ + G  VI  +H     +      + D
Sbjct: 155 PDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAA-----RYAD 209

Query: 104 RLYLLSGGKTV 114
           R+ LL  G+ V
Sbjct: 210 RIVLLHQGRLV 220

Length = 258

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           +SGG+++RV+IA  + M P ++  DEPTS LD      V + ++ L+ +GRT++   H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211

Length = 256

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 56.0 bits (136), Expect = 3e-08
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 7/82 (8%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG +++V +A  +   P++L LDEPT G+D  A   + + +R L+ +G+ ++      S
Sbjct: 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMI----S 458

Query: 96  SEVFELF---DRLYLLSGGKTV 114
           SE+ EL    DR+ ++  G+ V
Sbjct: 459 SELPELLGLSDRILVMREGRIV 480

Length = 500

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 7/104 (6%)

Query: 17  MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
           + L D  DTVIG     G   SGG+R+R+++A  +   P+L+ LDEP S LD      + 
Sbjct: 438 LRLPDGYDTVIGP---GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494

Query: 75  QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
             ++ L   G TV+   H+PS  +    D++ +L  G+   FGE
Sbjct: 495 NAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGE 536

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 5   EKRTLVERTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           E+  LV   + ++GL ++  D +  N     +SGG+++R+ IA  + ++P+LL LDEPTS
Sbjct: 114 EEEALVVDCLQKVGLFEEVKDKLKQN--ALALSGGQQQRLCIARALAIKPKLLLLDEPTS 171

Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
            LD  ++  + + L+ LS +   ++ + +    +    +   + L  G+ + FGE+   F
Sbjct: 172 ALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHL--GELIEFGESKEFF 229

Query: 124 E 124
           E
Sbjct: 230 E 230

Length = 246

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query: 7   RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-LEILMRPRLLFLDEPTSGL 65
              +   +  +GL   A    G      +S G++RRV++A L +  RP +  LDEPT+ L
Sbjct: 105 ELDIAAALEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRP-IWILDEPTAAL 158

Query: 66  DSAA-AFFVTQTLRCLSRDGRTVIASIHQP 94
           D+AA A F       L++ G  VIA+ H P
Sbjct: 159 DAAAVALFAELIRAHLAQGG-IVIAATHIP 187

Length = 207

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 31  HLR-----GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85
           HLR      +SGGERRRV IA  +   P+ + LDEP +G+D  +   + + +  L   G 
Sbjct: 129 HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188

Query: 86  TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
            V+ + H    E   + +R Y++S G  +  G
Sbjct: 189 GVLITDHN-VRETLAVCERAYIVSQGHLIAHG 219

Length = 241

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           S G ++R+ IA+ +L  P+LL LDEPT+GLD      + + +R     G TVI S H   
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH-IL 184

Query: 96  SEVFELFDRLYLLSGGKTVYFGE 118
           SEV +L D + ++S G   Y G+
Sbjct: 185 SEVQQLADHIGIISEGVLGYQGK 207

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 30  WHL--RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87
           WHL     SGGE++RV+IA   +    +L LDEPT+ LD+A    V + +      G  +
Sbjct: 143 WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAAL 202

Query: 88  IASIHQP 94
           I   H  
Sbjct: 203 IGIFHDE 209

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 31  HLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 88
           H    +SGGE++RV++A     RP +LF DEPT  LD A    +   L  L+R+ G T++
Sbjct: 142 HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201

Query: 89  ASIHQPS 95
              H P 
Sbjct: 202 LVTHDPQ 208

Length = 228

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++R+ IA  I ++P +L +DEP S LD  A   +   ++ L ++  T+I   H  
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN-FTIIVVTHS- 207

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
             +  ++ DR+     G+ V +  T   F+
Sbjct: 208 MKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237

Length = 251

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 32/89 (35%), Positives = 47/89 (52%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG+R+R++IA  ++++P L+ LDEPTS LD +    V   LR L +        I    
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487

Query: 96  SEVFELFDRLYLLSGGKTVYFGETSAAFE 124
           + V  L  R+ ++  GK V  G T A F 
Sbjct: 488 AVVRALCHRVIVMRDGKIVEQGPTEAVFA 516

Length = 534

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           +SGG+++RVSIA  + M P +L  DEPTS LD      V + ++ L+ +G+T++   H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211

Length = 257

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASI 91
           R  SGG ++R+ IA  ++ RPRL+F+DEPT GLD +    +   LR L R+ G  V+   
Sbjct: 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209

Query: 92  HQPSSEVFELFDRLYLLSGGKTVYFGET 119
           H  +     L DRL ++  G+ V  G T
Sbjct: 210 HDLAV-ARLLADRLMVMKQGQVVESGLT 236

Length = 258

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 12/130 (9%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P +E +  V   +  +GL D AD          +SGG+++RV+IA  +   P++L  DE
Sbjct: 113 VPKAEIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALANNPKILLCDE 167

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELF-DRLYLLSGGKTVYFGE 118
            TS LD      + + L+ ++R+ G T++   H+   EV +   DR+ +L  G+ V   E
Sbjct: 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEM--EVVKRICDRVAVLDQGRLV---E 222

Query: 119 TSAAFEFFAQ 128
                E FA 
Sbjct: 223 EGTVSEVFAN 232

Length = 339

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 52.9 bits (127), Expect = 9e-08
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 8/98 (8%)

Query: 17  MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
             L    DT +G    +G  +SGG+++RV+IA  ++  P++L LDE TS LD+ +   V 
Sbjct: 134 SELASGYDTEVGE---KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190

Query: 75  QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112
           Q L       RTV+   H+ S+   E  D++ +L GG+
Sbjct: 191 QALYDWPER-RTVLVIAHRLST--VERADQILVLDGGR 225

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           R +SGGERRR+++A  +L    L  LDEPT GLD      V   L   +  G+T++   H
Sbjct: 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTH 531

Query: 93  QPSSEVFELFDRLYLLSGGKTV 114
           +      E  DR+ +L  GK +
Sbjct: 532 RLRG--LERMDRIIVLDNGKII 551

Length = 573

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASI 91
           R  SGG ++R+ IA  ++ RPRL+F+DEPT GLD +    +   LR L RD G  VI   
Sbjct: 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVT 206

Query: 92  HQPSSEVFELFDRLYLLSGGKTVYFGET 119
           H        L  RL ++  G+ V  G T
Sbjct: 207 HDLGV-ARLLAQRLLVMQQGRVVESGLT 233

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR--TVIASI 91
           G+SGG+++RV IA  +   P+++ LDEPTS LD  +A  + +TL  L  D     V  S+
Sbjct: 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSM 207

Query: 92  HQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
            Q S     + DR      G  + + +T   F
Sbjct: 208 QQAS----RISDRTGFFLDGDLIEYNDTKQMF 235

Length = 252

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 8/98 (8%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
            +SGG+R+R+ IA  ++ +PR+L  DE TS LD+     V+++L  L +  R VIA  H+
Sbjct: 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL-KVTRIVIA--HR 644

Query: 94  PSSEVFELFDRLYLLSGGKTVY---FGETSAAFEFFAQ 128
            S+ +    DR+Y+L  G+ V    + E  A    FAQ
Sbjct: 645 LST-IRNA-DRIYVLDAGRVVQQGTYDELMAREGLFAQ 680

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE++RV+IA  IL  P +L LDE TS LD+     +   LR +S  GRT +   H+ 
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRL 458

Query: 95  SS 96
           S+
Sbjct: 459 ST 460

Length = 497

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 31/88 (35%), Positives = 46/88 (52%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG R+RV IA+ +L RP+LL  DEPT+ LD      +   L  L R+  T I  I    
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222

Query: 96  SEVFELFDRLYLLSGGKTVYFGETSAAF 123
             V  + D++ ++  G+T+ +G     F
Sbjct: 223 GVVAGICDKVLVMYAGRTMEYGNARDVF 250

Length = 330

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 20/126 (15%)

Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
             H  G+SGG+++R+ IA  I M P ++ +DEPTS LD  A   + + +  L ++   VI
Sbjct: 140 KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVI 199

Query: 89  A--SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR- 145
              S+ Q       + DR      G+ V   +T   F              NP D   + 
Sbjct: 200 VTHSMQQAR----RISDRTAFFLMGELVEHDDTQVIFS-------------NPKDDRTQG 242

Query: 146 CINSDF 151
            +N DF
Sbjct: 243 YVNGDF 248

Length = 249

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 32  LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIAS 90
           +R +S G+R R  IA  +L  P +LFLDEPT GLD  A   +   L+  +R+ G TV+ +
Sbjct: 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210

Query: 91  IHQPSSEVFELFDRLYLLSGGKTVYFG 117
            H    ++  L  R+ ++  G+ +Y G
Sbjct: 211 SHY-MKDIEALARRVLVIDKGRLLYDG 236

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
            +SGGE++RV+IA  I+  P +L  DEPT  LD    + +   L+ +++ G TV+ + H
Sbjct: 136 ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 10/101 (9%)

Query: 16  EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS--AAAFFV 73
            +GL    DT++G+     +S  +R+ V IA  +    R+L LDEPT+ L        F 
Sbjct: 132 RLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF- 185

Query: 74  TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
              +R L   G  +I   H+   EVFE+ DR+ +L  G+ V
Sbjct: 186 -DLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVV 224

Length = 500

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 93
           +SGG+++RV+IA  + MRP+++ LDE TS LD      + +T++ +  D   TVI SI  
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVI-SITH 199

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128
              EV  L DR+ ++  G+      TS   E F++
Sbjct: 200 DLDEV-ALSDRVLVMKNGQV---ESTSTPRELFSR 230

Length = 279

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +S G ++++     ++  P LL LDEP SGLD      +   +  L  +G T+I S H+ 
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR- 189

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAA 122
              V EL DRL +L  G+TV +G     
Sbjct: 190 MEHVEELCDRLLMLKKGQTVLYGTVEDI 217

Length = 300

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P +E    V   +  +GL+D AD          +SGG+++RV IA  +   P++L  DE
Sbjct: 112 VPKAEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDE 166

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
            TS LD      +   LR ++R+ G T++   H+    V  + DR+ ++  G+ V  G  
Sbjct: 167 ATSALDPETTQSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEEGTV 225

Query: 120 SAAF 123
              F
Sbjct: 226 EEVF 229

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 31  HLRG-----ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 85
           HLR      +SGGERRRV IA  +   P+ + LDEP +G+D  A   + + ++ L   G 
Sbjct: 131 HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGI 190

Query: 86  TVIASIHQPSSEVFELFDRLYLLSGGK 112
            V+ + H    E  ++ DR Y++S GK
Sbjct: 191 GVLITDHN-VRETLDICDRAYIISDGK 216

Length = 243

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQ 93
           +SGG+++RV+IA  ++ + +++  DEP + LD  +A  V  TLR +++ DG TV+ ++HQ
Sbjct: 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCIN 148
                    +R+  L  G   Y G +S  F+                DH  R IN
Sbjct: 213 -VDYALRYCERIVALRQGHVFYDG-SSQQFD------------NERFDHLYRSIN 253

Length = 262

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           R +SGGE+RR+ IA  +L    LL LDEPT GLD+     + + L   +++ +TV+   H
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN-KTVLMITH 532

Query: 93  QPSSEVFELFDRLYLLSGGK 112
           + +    E FDR+ ++  G+
Sbjct: 533 RLTG--LEQFDRICVMDNGQ 550

Length = 574

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASI 91
           R +SGGE++RV +A ++   P L   DEPT  LD   A  V   L    +  G +++ + 
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226

Query: 92  HQPSSEVFE-LFDRLYLLSGGKTVYFGETSAAFEFFAQ 128
           H P  EV E L D+   L  G+    G        F +
Sbjct: 227 HWP--EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME 262

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 2   PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
              E R ++   I  + L+D +D      +L  +SGG+R+R  IA+ +      + LDEP
Sbjct: 108 LTKEDRRIINEAIEYLHLEDLSDR-----YLDELSGGQRQRAFIAMVLAQDTDYVLLDEP 162

Query: 62  TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIH 92
            + LD   +  + + LR L+ + G+T++  +H
Sbjct: 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVLH 194

Length = 252

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 6/121 (4%)

Query: 6   KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 65
           +  LVER++ +  L D  +  + +  L G+SGG+++R+ IA  + + P ++ +DEP S L
Sbjct: 173 EDELVERSLRQAALWDEVNDRLDDNAL-GLSGGQQQRLCIARCLAVDPEVILMDEPASAL 231

Query: 66  DSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
           D  A   +   +  L+ +  TV+   H  Q ++ + +       L+GG+ V + +T   F
Sbjct: 232 DPIATSKIEDLIEELAEE-YTVVVVTHNMQQAARISD--QTAVFLTGGELVEYDDTDKIF 288

Query: 124 E 124
           E
Sbjct: 289 E 289

Length = 305

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P  E R + +  + E+GL D     + +   R +SGG+++ + +A  + + P +L LDE
Sbjct: 131 VPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDE 189

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTS LD      + + +R L+ D  TVI   H   ++   + DR  L   G+ V  G T 
Sbjct: 190 PTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHN-LAQAARISDRAALFFDGRLVEEGPTE 247

Query: 121 AAF 123
             F
Sbjct: 248 QLF 250

Length = 276

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
            +SGG+R+R++IA  ++  PR+L  DE TS LD  +   + + +R + R GRTVI   H+
Sbjct: 593 NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAHR 651

Query: 94  PSSEVFELFDRLYLLSGGKTV 114
            S+      DR+ +L  G+  
Sbjct: 652 LST--VRACDRIIVLEKGQIA 670

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 12/126 (9%)

Query: 5   EKRTLVERTIIEMGLQDCA--DTVIGNWH--LRGISGGERRRVSIALEILMRPRLLFLDE 60
            K+TL   TI+E  L+  A  D V    H     +SGG+++R+ IA  + + P ++ +DE
Sbjct: 118 NKKTL--DTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDE 175

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGE 118
           P S LD  A   +   +  L ++  TVI   H  Q ++ V +    +YL   GK + F +
Sbjct: 176 PCSALDPIATAKIEDLIEDLKKE-YTVIIVTHNMQQAARVSDYTGFMYL---GKLIEFDK 231

Query: 119 TSAAFE 124
           T+  FE
Sbjct: 232 TTQIFE 237

Length = 253

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+R+R+ IA  + M+P++L +DEPT+ +D      + + L  L ++  T++   H P
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSP 208

Query: 95  --SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
             ++ V +    LYL   GK +  G T   FE
Sbjct: 209 AQAARVSDYVAFLYL---GKLIEVGPTRKVFE 237

Length = 253

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 30  WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 89
           +HL   S G+++RV+IA  + M P ++ LDEP + LD      + + L  L   G+TVI 
Sbjct: 137 YHL---SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIV 193

Query: 90  SIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           + H       E  D++ +L  G+ +  G+ S
Sbjct: 194 ATHD-VDLAAEWADQVIVLKEGRVLAEGDKS 223

Length = 274

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 13  TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 72
             + +GL++     IG      +SGG+R+ +S+ +  L  P++L LDE T+ LD   A F
Sbjct: 132 ARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186

Query: 73  VTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 115
           V + T + +     T +   H     + +  +RL +L  GK V 
Sbjct: 187 VMELTAKIVEEHKLTTLMVTHNMEDAL-DYGNRLIMLHSGKIVL 229

Length = 263

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 10  VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 69
           VE  +  +GL    D  +       +S G++RRV++A  +L    L  LDEPT+ LD A 
Sbjct: 106 VEEALARVGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG 160

Query: 70  AFFVTQTLRCLSRDGRTVIASIHQP 94
                + +      G  V+ + HQ 
Sbjct: 161 VARFAEAMAGHCARGGMVVLTTHQD 185

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 7/114 (6%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M     +  VE  I  +GL+      IG      +S G R+RV +A  ++  P++L LDE
Sbjct: 105 MKGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDE 159

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
           PT+GLD      +   ++ + +D +T+I S H    EV  + DR+ +++ GK V
Sbjct: 160 PTTGLDPNQLVEIRNVIKNIGKD-KTIILSTHI-MQEVEAICDRVIIINKGKIV 211

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 13/126 (10%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG---ISGGERRRVSIALEILMRPRLLF 57
           +P  E R  V+R + E+GL          +  R    +SGG+ + V++A  + M P  L 
Sbjct: 108 LPPIEIRKRVDRALAEIGL--------EKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159

Query: 58  LDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
            DE TS LD  +   V + ++ L   G+T++   H  + E     DR+ ++  GK V  G
Sbjct: 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH--NLEELHDADRIIVMDRGKIVLEG 217

Query: 118 ETSAAF 123
           E     
Sbjct: 218 EPENVL 223

Length = 274

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 36  SGGERRRVSIALEIL-----MRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           SGGE +RV +A  +L     + P  +LL LDEP + LD A    + + L  L + G  V+
Sbjct: 128 SGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVV 187

Query: 89  ASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
            S H   +      DR++LL  GK +  G  
Sbjct: 188 MSSHD-LNHTLRHADRVWLLKQGKLLASGRR 217

Length = 248

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 35  ISGGERRRVSIALEILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIH 92
           +SGGER+RV++A  +L+R + +L LDEP + LD A    +   +  L  +   TV+   H
Sbjct: 129 LSGGERQRVALA-RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187

Query: 93  QPSSEVFELFDRLYLLSGGKTVYFG 117
           QP  +   L  R+  L  G+    G
Sbjct: 188 QP-EDAKRLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG  +RV IAL +L+ P  L  DEPT+ LD      V + LR L +   T I  I   
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 126
              V  + D + ++  G+ V   E     E F
Sbjct: 186 LGVVARIADEVAVMDDGRIV---ERGTVKEIF 214

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P  E   +V   + ++G+ D  D+   N     +SGG+++RV+IA  + + P+++ LDE
Sbjct: 115 VPRPEMIKIVRDVLADVGMLDYIDSEPAN-----LSGGQKQRVAIAGILAVEPKIIILDE 169

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
            TS LD A    + + +R L +     + SI     E   + D++ +L  GK +  G   
Sbjct: 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPV 228

Query: 121 AAF---EFFAQAGFPCP 134
             F   E   + G   P
Sbjct: 229 EIFSKVEMLKEIGLDIP 245

Length = 282

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 10/102 (9%)

Query: 20  QDCADTVIGNWHLR---------GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 70
                + I    ++          +SGG +++  +A  +L  PR+L LDEPT G+D  A 
Sbjct: 380 LQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAK 439

Query: 71  FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112
           + + + +  L+++G  +I  +    +EV  L DR+ ++  GK
Sbjct: 440 YEIYKLINQLAQEGVAIIV-VSSELAEVLGLSDRVLVIGEGK 480

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE++ ++I   ++ +PRLL LDEP+ GL       +  T+  L   G T+   + Q 
Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL-VEQN 196

Query: 95  SSEVFELFDRLYLLSGGKTV 114
           +++  +L DR Y+L  G  V
Sbjct: 197 ANQALKLADRGYVLENGHVV 216

Length = 237

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 31  HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 90
            +  +SGG +++V I   +L +P +L LDEPT G+D  A F + Q +  L++  + +I  
Sbjct: 388 QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIII 447

Query: 91  IHQPSSEVFELF---DRLYLLSGGKTVYFGETS 120
               SSE+ EL    DR+ ++S G      +T 
Sbjct: 448 ----SSEMPELLGITDRILVMSNGLVAGIVDTK 476

Length = 491

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +   +     E+ +  + L+  AD     + L  +SGG+++RV+IA  ++M P++L  DE
Sbjct: 113 LSKDQALARAEKLLKRLRLKPYAD----RYPLH-LSGGQQQRVAIARALMMEPQVLLFDE 167

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           PT+ LD      +   ++ L+  G T +   H+
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHE 200

Length = 242

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86
           +SGGER+RV+IA  ++ +P L+  DEPT  LD+  A  +   +  L+R+  T
Sbjct: 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 21/59 (35%), Positives = 39/59 (66%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           +SGG+++RV+IA  + ++P+L+  DEPTS LD      V + ++ L+ +G T++   H+
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195

Length = 240

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 52.3 bits (125), Expect = 5e-07
 Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 19  LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           L D  +T++G+ +   +SGG+++R+SIA  I+  P++L LDE TS LD+ + + V +T+ 
Sbjct: 565 LPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623

Query: 79  CLS-RDGRTVIASIHQPSS 96
            L   + R  I   H+ S+
Sbjct: 624 NLKGNENRITIIIAHRLST 642

Length = 1466

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 51.9 bits (125), Expect = 6e-07
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           SGG RRRV++A  +L  P LL LDEPT+ LD
Sbjct: 155 SGGWRRRVALARALLEEPDLLLLDEPTNHLD 185

Length = 530

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 24/108 (22%)

Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTV 87
           N     +SGG+R+RV++A  ++ +P++  LDEP S LD               R   R+ 
Sbjct: 128 NRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD------------AKLRVLMRSE 175

Query: 88  IASIHQ--------PSSEVFE---LFDRLYLLSGGKTVYFGETSAAFE 124
           I  +H+         + +  E   L DR+ +++ G+    G     +E
Sbjct: 176 IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223

Length = 338

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 35  ISGGERRRVSIALEIL-----MRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV 87
           +SGGE +RV +A  +L       P  +LL LDEP + LD A    + + L  L + G  +
Sbjct: 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAI 185

Query: 88  IASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           + S H   +       R +LL  GK +  G  
Sbjct: 186 VMSSHD-LNHTLRHAHRAWLLKRGKLLASGRR 216

Length = 248

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 19/130 (14%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG-----ISGGERRRVSIALEILMRPRL 55
           +P  E R  V+  +   G++          HL+      +S G+++RV+IA  ++M P++
Sbjct: 113 LPEDEVRKRVDNALKRTGIE----------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162

Query: 56  LFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELF-DRLYLLSGGKT 113
           L LDEPT+GLD      + + L  + ++ G T+I + H    ++  L+ D ++++  G+ 
Sbjct: 163 LVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATH--DIDIVPLYCDNVFVMKEGRV 220

Query: 114 VYFGETSAAF 123
           +  G     F
Sbjct: 221 ILQGNPKEVF 230

Length = 283

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++RV+IA  + ++P ++ LDE TS LD      V +T+R L       + SI   
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
             E  +  DR+ +++ G+ +  G     F+
Sbjct: 201 LDEAAQA-DRVIVMNKGEILEEGTPEEIFK 229

Length = 279

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 31  HLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
             RG  +SGG++++++IA  ++ RP+LL LDEPT G+  +    + + +R L  +G   I
Sbjct: 126 GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAI 185

Query: 89  ASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121
             + Q      EL DR Y++  G+ V  G    
Sbjct: 186 LLVEQYLDFARELADRYYVMERGRVVASGAGDE 218

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 10  VERTIIEMGLQDCADT--VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 67
           +   + ++GL D A+       W  R +SGGE++R++ A  +L +P+ +FLDE TS LD 
Sbjct: 490 LVAVLHKVGLGDLAERLDEEDRWD-RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548

Query: 68  AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 99
                + Q L+    D  TVI+  H+P+   F
Sbjct: 549 ETEDRLYQLLKEELPDA-TVISVGHRPTLWNF 579

Length = 604

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQ 93
           +SGGE +RVSIA  +   P +L LDEPTS LD  +   + + +  L ++   TVI   H 
Sbjct: 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 126
              +   + D    L+ G  V + +T   ++FF
Sbjct: 192 -MEQAKRIGDYTAFLNKGILVEYAKT---YDFF 220

Length = 241

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 49.9 bits (120), Expect = 8e-07
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 8/100 (8%)

Query: 17  MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
           M L +  DTV+G     G  +S GER+ ++IA  +L  P++L LDE TS +D+     + 
Sbjct: 123 MKLPNGYDTVLGE---NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179

Query: 75  QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
           + L  L   GRT I   H+ S+      D++ +L  GK +
Sbjct: 180 EALEKL-MKGRTSIIIAHRLSTIKNA--DKILVLDDGKII 216

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++R+ IA  I   P ++ +DEP S LD  A   +   +  L+ +  TV+   H  
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHN- 238

Query: 95  SSEVFELFDRL-YLLSGGKTVYFGETSAAFE 124
             +   + D+    L+GG+ V F +T   FE
Sbjct: 239 MQQAARISDKTAVFLTGGELVEFDDTDKIFE 269

Length = 285

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           +  SGG+++R+ IA  + +RP+++ LDEPTS LD  ++  + +TL  L     T I   H
Sbjct: 146 QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ-YTFIMVTH 204

Query: 93  QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
               +   + D+   L  G  +  G T   F
Sbjct: 205 N-LQQAGRISDQTAFLMNGDLIEAGPTEEMF 234

Length = 251

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 10/125 (8%)

Query: 4   SEKRTLVERTIIEMGLQDCA--DTVIGNWHLR--GISGGERRRVSIALEILMRPRLLFLD 59
            +K+ L +  I+E  L+  A  D V  +       +SGG+++R+ IA  I ++P ++ +D
Sbjct: 115 KDKKELDK--IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD 172

Query: 60  EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH-QPSSEVFELFDRLYLLSGGKTVYFGE 118
           EPTS LD  +   +   +  L ++   VI + + Q +S V + +   +L+  G  + F +
Sbjct: 173 EPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSD-YTAFFLM--GDLIEFNK 229

Query: 119 TSAAF 123
           T   F
Sbjct: 230 TEKIF 234

Length = 251

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
           DT + N   R  SGGER+R+++A  +L    ++ LDEPT GLD      +   +  + +D
Sbjct: 88  DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD 147

Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
            +T+I   H  +    E  D++  L  GK +  G
Sbjct: 148 -KTLIWITHHLTG--IEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 5   EKRTLVERTIIEMGLQDCA--DTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDE 60
           E+R  V   I+E  L   A  D V    H   +S  GG+++R+ IA  + M+P +L LDE
Sbjct: 131 ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDE 190

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           P S LD  +   + + +  L  +   +I +      +   + DR      G  V + +T 
Sbjct: 191 PASALDPISNAKIEELITELKEEYSIIIVT--HNMQQALRVSDRTAFFLNGDLVEYDQTE 248

Query: 121 AAF 123
             F
Sbjct: 249 QIF 251

Length = 268

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH- 92
           G+SGG+++R+ IA  + + P +L LDEPTS LD  A   + + ++ L +   T++   H 
Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHN 202

Query: 93  -QPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
            Q ++ +    DR      G+ V +G T   F 
Sbjct: 203 MQQAARI---SDRTAFFYDGELVEYGPTEQIFT 232

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 13/115 (11%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +   ++  +  + + ++GL+      I  W L   SGG+R+RV IA  +   P+LL LDE
Sbjct: 100 VEKMQRLEIAHQMLKKVGLEGAEKRYI--WQL---SGGQRQRVGIARALAANPQLLLLDE 154

Query: 61  PTSGLDSAAAFFVTQT----LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 111
           P   LD   AF   Q     L+     G+ V+   H     VF +   L LLS G
Sbjct: 155 PFGALD---AFTREQMQTLLLKLWQETGKQVLLITHDIEEAVF-MATELVLLSPG 205

Length = 255

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 93
           +SGG ++RV +A  +   P +L +DE  S LD      +   L+ L     +T++   H 
Sbjct: 130 LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 145
              E   + DR+ ++  G+ V             Q G P   LRNP++ ++ 
Sbjct: 190 -LDEAIRIGDRIVIMKAGEIV-------------QVGTPDEILRNPANEYVE 227

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
              SGG ++R+ IA  ++  PRL+F+DEPT GLD
Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183

Length = 258

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 5   EKRTLVERTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           E + +VE  + ++GL ++  D +  N     +SGG+++R++IA  + ++P++L +DEPTS
Sbjct: 125 EIKKIVEECLRKVGLWKEVYDRL--NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182

Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
            +D   +  + + +  L  +   VI S H P  +V  + D +  L  G+ V +G ++  F
Sbjct: 183 MIDIVNSQAIEKLITELKNEIAIVIVS-HNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240

Length = 257

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 3/112 (2%)

Query: 9   LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 68
           +VE ++ +  L D   + + N     +SGG+++R+ IA  + + P ++ LDEPTS LD  
Sbjct: 122 IVEESLKKAALWDEVKSEL-NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPI 180

Query: 69  AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           A   + + L  LS +   VI +      +   + D +  +  G+ + +G T 
Sbjct: 181 ATQRIEKLLEELSENYTIVIVT--HNIGQAIRIADYIAFMYRGELIEYGPTR 230

Length = 250

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 31  HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 89
           HL  +SGG+++RV+IA  + MRP  +  DEPT+ LD +    V  T++ L++  G T+I 
Sbjct: 143 HL--LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIIL 200

Query: 90  SIHQPSSEVFELFDRLYLLSGGKTVYFG 117
             H    E  E  DR+ ++  GK V  G
Sbjct: 201 ITHY-MEEAVEA-DRIIVMDSGKVVMEG 226

Length = 280

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           +SGG++RRV++A  I M    L LDEPT GLD      F+    R      + +I   H 
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA 127
              +V  + D + ++  GK +  G   + FE F+
Sbjct: 211 -MDQVLRIADEVIVMHEGKVISIG---SPFEIFS 240

Length = 289

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 24  DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
           DT++G    RG  +SGGER+R++IA  IL    +L LDE TS LD      V   +  L 
Sbjct: 462 DTLVGE---RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR 518

Query: 82  RDGRTVI 88
           ++  T I
Sbjct: 519 KNRTTFI 525

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 30/89 (33%), Positives = 43/89 (48%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG+R+RV IA+ +   P LL  DEPT+ LD      +   L+ L  +    I  I    
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218

Query: 96  SEVFELFDRLYLLSGGKTVYFGETSAAFE 124
             V +  DR+Y++  G+ V  G T   F 
Sbjct: 219 GIVRKFADRVYVMQHGEIVETGTTETLFA 247

Length = 534

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 19/78 (24%), Positives = 37/78 (47%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE++R+++   +   P++L LDE TS LD +    + + +    R+    +  I   
Sbjct: 134 LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHD 193

Query: 95  SSEVFELFDRLYLLSGGK 112
             +     D++  L  G 
Sbjct: 194 KDQAIRHADKVITLQPGH 211

Length = 223

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 93
           +SGG+++RV+IA  ++  P++L LDEP   LD      +   L+ L ++ G T +   H 
Sbjct: 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD 190

Query: 94  PSSEVFELFDRLYLLSGGKTVYFG 117
              E   + DR+ +++ GK    G
Sbjct: 191 -QEEALTMSDRIAVMNKGKIQQIG 213

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 7   RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           +  +E  +  +GL    D          +S G++RR+++A   L R  L  LDEPT+ LD
Sbjct: 105 QRTIEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALD 159

Query: 67  SAAAFFVTQTLRCLSRDGRTVIASIHQ--PSSEVFEL 101
            A    +   LR     G  V+ + HQ     E  EL
Sbjct: 160 KAGVALLAGLLRAHLARGGIVLLTTHQDLGLVEAREL 196

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 25  TVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-AAFFVTQTLRCLS 81
           T IG    +GI  SGG+++R+S+A  +     +  LD+P S +D+          +  L 
Sbjct: 119 TEIGE---KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL 175

Query: 82  RDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112
            + +T I   HQ   ++    D++ +L  G+
Sbjct: 176 LNNKTRILVTHQL--QLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           +SGG+ RRV+IA  + M P +L LDEPT+GLD
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177

Length = 290

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 93
           +SGGE++RV++A     RP +LF DEPT  LD      +   L  L+R+ G T+I   H 
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206

Query: 94  P 94
            
Sbjct: 207 L 207

Length = 228

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE +RV+IA  +L        DEP++ LD        + +R LS +G+     +   
Sbjct: 72  LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCP--ALRNPSDHFLRCINSDF 151
            + +  L DR+++  G   VY              G        R   + FLR     F
Sbjct: 132 LAVLDYLSDRIHVFEGEPGVY--------------GIASQPKGTREGINRFLRGYLITF 176

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 18/99 (18%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---------CLSRDGR 85
           +SGG+R+RV++A  +  RP+LL LDEP   LD        + LR          L R G 
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALD--------KKLRDRMQLEVVDILERVGV 201

Query: 86  TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
           T +   H    E   +  R+ +++ GK V  GE    +E
Sbjct: 202 TCVMVTHD-QEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239

Length = 377

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 45.9 bits (110), Expect = 5e-06
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           SGGE+ R+++A  +L  P LL LDEPT+ LD
Sbjct: 72  SGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 17/31 (54%), Positives = 26/31 (83%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           SGG+R+R++IA  ++++P L+ LDEPTS LD
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLD 457

Length = 529

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           R +SGG +++V IA  +   P+LL +DEPT G+D +A   + Q +R ++     V+  I 
Sbjct: 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF-IS 460

Query: 93  QPSSEVFELFDRLYLLSGGK 112
               E+ ++ DR+ ++  G+
Sbjct: 461 SDLEEIEQMADRVLVMHQGE 480

Length = 510

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+R+RV++A  + + P++L LDEP   LD+     +   LR L  +       +   
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFL 144
             E  E+ DR+ ++S GK               Q G P     +P++ F+
Sbjct: 191 QEEAMEVADRIVVMSNGKIE-------------QIGSPDEVYDHPANPFV 227

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 48.7 bits (117), Expect = 6e-06
 Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
           DT IG+    G+S G+ +R+++A  +L   +LL LDEPT+ LD+ +   V Q L   SR 
Sbjct: 476 DTPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR- 533

Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGKTV---YFGETSAAFEFFAQ 128
            +T +   HQ   E    +D+++++  G+ V    + E S A   FA 
Sbjct: 534 RQTTLMVTHQ--LEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFAT 579

Length = 588

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           +SGGERRRV++   +L +P +L LDEPT+ LD+ +  ++ Q L+       TV+A  H
Sbjct: 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ---EYPGTVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
           M   +  DT +G      +SGG+++R++IA  ++ +PR+L LDE TS LD+     + Q 
Sbjct: 601 MEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL-QE 658

Query: 77  LRCLSRDGRTVIASIHQPS 95
            R   R  RTV+   H+ S
Sbjct: 659 SRS--RASRTVLLIAHRLS 675

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 18  GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 77
            L    DT IG   +  +SGG+R+R++IA  +L    +L LDE TS LD+ +   V   L
Sbjct: 454 KLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512

Query: 78  RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
             L + GRT +   H+ S+   E  DR+ ++  G+ V
Sbjct: 513 ERLMQ-GRTTLVIAHRLST--IEKADRIVVMDDGRIV 546

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 15/111 (13%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 94
           SGG+++RV +A  +   P +L +DEP   LD      + + ++ L ++ G+T++   H  
Sbjct: 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD- 195

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 145
             E  +L DR+ ++  G+ V +               P   L NP++ F+ 
Sbjct: 196 IDEALKLADRIAVMDAGEIVQYDT-------------PDEILANPANDFVE 233

Length = 309

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
            E+R  V   + ++GL           +   +SGG+R+R+ IA  + + P+L+  DEP S
Sbjct: 83  EERRERVLELLEKVGL----PEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS 138

Query: 64  GLD 66
            LD
Sbjct: 139 ALD 141

Length = 268

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 93
           +SGG+++RV++A  ++ RP LL LDEP   LD+     +   +  L +  G TV+   H 
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193

Query: 94  PSSEVFELFDRLYLLSGGK 112
             SE   + DR+ L+  GK
Sbjct: 194 -VSEAVAMADRVLLIEEGK 211

Length = 257

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 8/70 (11%)

Query: 24  DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
           DT +G    RG+  SGG+R+R++IA  IL    +L LDE TS LD+ +   V Q L  L 
Sbjct: 467 DTYLGE---RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM 523

Query: 82  RDGRT--VIA 89
           + GRT  +IA
Sbjct: 524 K-GRTTLIIA 532

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.1 bits (113), Expect = 8e-06
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 70
            G+SGG+++R+ IA  + ++P +L +DEPTS LD  + 
Sbjct: 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185

Length = 253

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 15/112 (13%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 93
           +SGG+++RV +A  +   P LL +DEP   LD      + +  + L ++ G+T++   H 
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR 145
              E F L DR+ ++  G+ V             Q G P   LR+P++ F+ 
Sbjct: 196 -IDEAFRLADRIAIMKNGEIV-------------QVGTPDEILRSPANDFVA 233

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)

Query: 3    WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 62
            W E +  +E  + + GL         N   + +SGG +R++S+A+  +   +++ LDEPT
Sbjct: 1035 WEEAQLEMEAMLEDTGLHHKR-----NEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089

Query: 63   SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112
            SG+D  +   +   L    R GRT+I S H    E   L DR+ ++S G+
Sbjct: 1090 SGVDPYSRRSIWDLL-LKYRSGRTIIMSTHH-MDEADLLGDRIAIISQGR 1137

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 48.5 bits (115), Expect = 1e-05
 Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 24   DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-R 82
            DT +G +  + +SGG+++R++IA  +L  P++L LDE TS LDS +   + +T+  +  +
Sbjct: 1349 DTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407

Query: 83   DGRTVIASIHQPSS 96
              +T+I   H+ +S
Sbjct: 1408 ADKTIITIAHRIAS 1421

Length = 1466

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++R+ IA  + ++P+++  DEPTS LD  +   +   +  L +D   VI + +  
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQ 214

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
            +     +   +L+  G+ + FG+T   F 
Sbjct: 215 QAARISDYTGFFLM--GELIEFGQTRQIFH 242

Length = 258

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 9/122 (7%)

Query: 4   SEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 62
           +EKR +    +++M GL D AD +        +SGG+++RV+IA  + MRP+++  DE T
Sbjct: 123 AEKRAM---ELLDMVGLADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVT 174

Query: 63  SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122
           S LD      V   +R L+ +    +  +        E  DR+     G+ V  G+    
Sbjct: 175 SALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234

Query: 123 FE 124
           F 
Sbjct: 235 FR 236

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           G SGGE++R  I    L+ P+L  LDE  SGLD  A   V + +  L    R+ +   H 
Sbjct: 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY 203

Query: 94  PSSEVFELF--DRLYLLSGGKTVYFGETSAAFE 124
               +      D +++L  G+ V  G+   A E
Sbjct: 204 Q--RLLNYIKPDYVHVLLDGRIVKSGDVELAKE 234

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 2   PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
                R +V   +  + + +     IG      +SGG+++RV +A  I  + +++ LDEP
Sbjct: 115 AKKRDRQIVTAALARVDMVEFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEP 169

Query: 62  TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 110
            +G+D      +   LR L  +G+T++ S H   S V E  D   ++ G
Sbjct: 170 FTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS-VTEFCDYTVMVKG 217

Length = 272

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 47.4 bits (114), Expect = 1e-05
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 5/44 (11%)

Query: 23  ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
            D  +       +SGGERRRV++   +L +P +L LDEPT+ LD
Sbjct: 157 WDAKVTK-----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195

Length = 556

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           +E    V + + +  +   AD  + +     +SGG+R+R  +A+ +     ++ LDEPT+
Sbjct: 113 AEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTT 167

Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIH---QPSSEVFELFDRLYLLSGGKTV 114
            LD      + + +R L+  G+TV+  +H   Q S       D L +L+ G  +
Sbjct: 168 YLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC----DHLVVLANGHVM 217

Length = 255

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
           +GL + A+   GN     ++ G++RR+ IA  ++ +P +L LDEP +GL+      + + 
Sbjct: 141 VGLLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL 195

Query: 77  LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 112
           +  L  +    +  I      V  + DR+Y+++ G 
Sbjct: 196 IAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231

Length = 255

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++RVSIA  ++   +++  DEPT  LDS +   V   L  L   G TVI   H P
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204

Length = 648

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+ RRV+IA  +   P +L LDEP +GLD      + Q  +   + G TVI   H  
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN- 204

Query: 95  SSEVFELFDRLYLLSGGKTV 114
             +V E  D + +L  GK +
Sbjct: 205 MDDVAEYADDVLVLEHGKLI 224

Length = 287

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++RV IA  + ++P ++ LDEPTS LD  ++  +   L  L RD  T+I   H  
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTHS- 206

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAF 123
             +   + D+      G  + F +T   F
Sbjct: 207 MHQASRISDKTAFFLTGNLIEFADTKQMF 235

Length = 252

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 45/89 (50%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG R+RV IA+ +  RP +L  DEPT+ LD      + Q ++ L ++    +  I   
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAF 123
              V E+ DR+ ++  G+ V  G     F
Sbjct: 229 MGVVAEIADRVLVMYQGEAVETGSVEQIF 257

Length = 623

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 18  GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 77
           GL    D  +G      +S G++RRV++A   L    L  LDEP + LD      +T  +
Sbjct: 119 GLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALM 173

Query: 78  RCLSRDGRTVIASIHQPSS 96
              +  G  V+ + HQP  
Sbjct: 174 AAHAAQGGIVLLTTHQPLP 192

Length = 209

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 29/82 (35%), Positives = 42/82 (51%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGGE++RV+I   +L  P LL +DEP + LD      +   L  L+R+    I  +    
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL 189

Query: 96  SEVFELFDRLYLLSGGKTVYFG 117
            E+  L DR+ +L  GK   FG
Sbjct: 190 DEILRLADRVVVLEQGKVKAFG 211

Length = 352

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 13/94 (13%)

Query: 35  ISGGERRRVSIALEILMR----------PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84
           +SGGE  RV  A  +L +          PR L LDEPT+ LD A    +  T+R L+RD 
Sbjct: 146 LSGGELARVQFA-RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW 204

Query: 85  RT-VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
              V+A +H P+       DR+ +L+ G  V  G
Sbjct: 205 NLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHG 237

Length = 272

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 12/125 (9%)

Query: 5   EKRTLVERTIIEMGLQDCA--DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDE 60
           +K+ L E  I+E  L+  A  D V  + H     +SGG+++R+ IA  I ++P +L +DE
Sbjct: 132 DKKVLDE--IVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDE 189

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGE 118
           P S LD  +   + +T+  L +   T+I   H  Q ++   +     YL   G  + + +
Sbjct: 190 PASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAARASDYTAFFYL---GDLIEYDK 245

Query: 119 TSAAF 123
           T   F
Sbjct: 246 TRNIF 250

Length = 267

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 93
           +SGG+++RV++A  ++  P++L LDEP S LD+     + + L+ L R+ G T +   H 
Sbjct: 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH- 195

Query: 94  PSSEVFELFDRLYLLSGGK 112
              E   + DR+ +++ G+
Sbjct: 196 DQEEALAMSDRIAVMNDGR 214

Length = 352

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 9/126 (7%)

Query: 1   MPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 59
           +  SE   +VE ++  + L D   D +  N     +SGG+++R+ IA  I ++P ++ +D
Sbjct: 116 VNRSEADEIVESSLKRVALWDEVKDRLKSNAME--LSGGQQQRLCIARTIAVKPEVILMD 173

Query: 60  EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFG 117
           EP S LD  +   + + +  L ++  T+I   H  Q ++ V +     Y+   G  V  G
Sbjct: 174 EPASALDPISTLKIEELIEEL-KEKYTIIIVTHNMQQAARVSDYTAFFYM---GDLVECG 229

Query: 118 ETSAAF 123
           ET   F
Sbjct: 230 ETKKIF 235

Length = 252

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           +SGGE++RV IA  ++ +P +L  DEPT  LD A +  + +     +R G TV+ + H
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195

Length = 222

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 31  HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 90
           ++  +SGGE +RV+IA  +       F DEP+S LD        + +R L+ D   V+  
Sbjct: 136 NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVV 195

Query: 91  IH 92
            H
Sbjct: 196 EH 197

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH- 92
            +SGG+++R+ IA  I +RP +L LDEP S LD  +   + + +  L +D  TV+   H 
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD-YTVVIVTHN 214

Query: 93  -QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
            Q ++   +    +YL   G+ + FG T   F
Sbjct: 215 MQQAARCSDYTAFMYL---GELIEFGNTDTIF 243

Length = 260

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82
           +SGGER+RV+IA  ++  PRL+  DEPT  LD+  A  + Q L  L+R
Sbjct: 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193

Length = 233

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 9/118 (7%)

Query: 10  VERTIIEM----GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 65
           ++R + E+    GL D  D+   N     +SGG+++RV+IA  +   P++L  DE TS L
Sbjct: 117 IKRKVTELLALVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSAL 171

Query: 66  DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
           D A    + + L+ ++R     I  I      V  + D + ++S G+ +  G  S  F
Sbjct: 172 DPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASI 91
           + +SGG+R+RV++   I+  P++  +DEP S LD+     +   L+ L +  G T I   
Sbjct: 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188

Query: 92  HQPSSEVFELFDRLYLLSGGKTVYFG 117
           H    E   + DR+ +++ G+    G
Sbjct: 189 HD-QVEAMTMADRIAVMNDGQIQQIG 213

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
             +SGGE+ R+ +A  +L  P LL LDEPT+ LD
Sbjct: 438 GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471

Length = 530

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 8/90 (8%)

Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
           +  IG      +SGG +++V+IA  ++ RP++L LDEPT G+D  A   + Q +     +
Sbjct: 390 EQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444

Query: 84  GRTVI-ASIHQPSSEVFELFDRLYLLSGGK 112
           G ++I  S   P  EV  + DR+ ++  G+
Sbjct: 445 GLSIILVSSEMP--EVLGMSDRILVMHEGR 472

Length = 501

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++R+ IA  + ++P++L +DEP  GLD  A+  V   ++ L       +  +   
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210

Query: 95  SSEVFELFDRLYLLSG-----GKTVYFGETSAAF 123
             +V  L D      G     G+ V FG T   F
Sbjct: 211 LHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244

Length = 261

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           +SGG+++RV+IA  ++M P++L  DEPT+ LD      +   +R L+  G T +   H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200

Length = 242

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-----GRTVIA 89
           +SGG+R+RV++A  + + P++L LDEP   LD+     V + LR   R        T + 
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAK----VRKELRRWLRRLHDELHVTTVF 192

Query: 90  SIHQPSSEVFELFDRLYLLSGGKTVYFG 117
             H    E  E+ DR+ +++ G+    G
Sbjct: 193 VTHD-QEEALEVADRVVVMNKGRIEQVG 219

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 12/125 (9%)

Query: 5   EKRTLVERTIIEMGLQDCA--DTVIGNWHLR--GISGGERRRVSIALEILMRPRLLFLDE 60
           +K+ L E  I+E  L+  A  D V         G+SGG+++R+ IA  + + P +L +DE
Sbjct: 115 DKKKLDE--IVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGE 118
           PTS LD  +   + + ++ L +D  T++   H  Q +S +    D+      G+ V FG+
Sbjct: 173 PTSALDPISTLKIEELIQELKKD-YTIVIVTHNMQQASRI---SDKTAFFLNGEIVEFGD 228

Query: 119 TSAAF 123
           T   F
Sbjct: 229 TVDLF 233

Length = 250

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 31  HLRGISGGERRRVSIAL-----EILM---RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 82
            ++ +SGGER   S+AL     ++L    R  LLFLDEP   LD      + + L  L  
Sbjct: 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS 871

Query: 83  DGRTVI 88
           DGR +I
Sbjct: 872 DGRQII 877

Length = 908

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 19/35 (54%), Positives = 27/35 (77%)

Query: 32  LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           ++ +SGGE +RV +A  +L RP+LL LDEPT G+D
Sbjct: 118 MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152

Length = 251

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQ 93
           +S GER RV++A  ++  PR++ LDEPT  +D      VT + L+      +T I   H 
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGET 119
               V ++ DR  L+  GK V  G+ 
Sbjct: 488 -MDFVLDVCDRAALMRDGKIVKIGDP 512

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           SGG+R+R++IA  +++ P ++  DEP S LD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186

Length = 327

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 12/124 (9%)

Query: 6   KRTLVERTIIEMGLQDCA--DTVIGNWHLR--GISGGERRRVSIALEILMRPRLLFLDEP 61
           K+ L E  I+E  L+D A  D V    H +   +SGG+++R+ IA  +   P +L +DEP
Sbjct: 125 KKKLQE--IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEP 182

Query: 62  TSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVYFGET 119
           TS LD  +   + + +  L ++  T++   H  Q ++ V    D+      G+ V   +T
Sbjct: 183 TSALDPVSTRKIEELILKL-KEKYTIVIVTHNMQQAARV---SDQTAFFYMGELVECNDT 238

Query: 120 SAAF 123
           +  F
Sbjct: 239 NKMF 242

Length = 259

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           G+SGG+++R+ IA  + ++P++L +DEP S LD  A   V + +  L  +    IA +  
Sbjct: 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE--LTIAIVTH 207

Query: 94  PSSEVFELFDRLYLLSG-----GKTVYFGETSAAF 123
              +   + D     S      G+ V FG T+  F
Sbjct: 208 NMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242

Length = 259

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH-- 92
           +SGG+++R+ IA  +   P +L  DEPTS LD  A   + + +  L ++  T++   H  
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHNM 220

Query: 93  QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
           Q ++ V +    +Y+   G+ + FG T   F
Sbjct: 221 QQAARVSDYTAYMYM---GELIEFGATDTIF 248

Length = 265

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS--I 91
           G+SGG+++R+ IA  + + P +L +DEPTS LD A+   +   +  L +    +I +  +
Sbjct: 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNM 207

Query: 92  HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
           HQ +     + D       G  V  G T   F 
Sbjct: 208 HQAA----RVSDTTSFFLVGDLVEHGPTDQLFT 236

Length = 252

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS--IHQ 93
           SGGE+ R+ +AL +  RP LL LDEPT+ LD      +T+ L  +  +G  V+ S   H 
Sbjct: 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGALVVVSHDRHL 489

Query: 94  PSSEVFELFDRLYLLSGGKTVYF 116
             S      D LYL+  GK   F
Sbjct: 490 LRSTT----DDLYLVHDGKVEPF 508

Length = 638

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 18/145 (12%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +   E+R      + ++GL++ A     + +   +SGG R+RV +A  + + P +L +DE
Sbjct: 136 INAEERREKALDALRQVGLENYA-----HSYPDELSGGMRQRVGLARALAINPDILLMDE 190

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
             S LD      +   L  L    +  I  I     E   + DR+ ++  G+ V      
Sbjct: 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV------ 244

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLR 145
                  Q G P   L NP++ ++R
Sbjct: 245 -------QVGTPDEILNNPANDYVR 262

Length = 400

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++RV+IA  + + P ++  DE TS LD      + + +  L +  +  + SI   
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202

Query: 95  SSEVFELFDRLYLLSGGKTVYFGE 118
             E   L D++ + S GK +  G+
Sbjct: 203 MDEAI-LADKVIVFSEGKLIAQGK 225

Length = 271

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 44.4 bits (106), Expect = 9e-05
 Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 12/113 (10%)

Query: 18  GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 77
           GL D AD          +SGG+++RV+IA  +   P++L  DE TS LD A    + + L
Sbjct: 129 GLSDKADRYPAQ-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183

Query: 78  RCLSRD-GRTVIASIHQPSSEVF-ELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128
           + ++R+ G T++   H+   +V   + DR+ ++  G+ V   E     E F+ 
Sbjct: 184 KDINRELGLTIVLITHE--MDVVKRICDRVAVIDAGRLV---EQGTVSEVFSH 231

Length = 343

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG  +RV IA+ I  RP+LL  DEPT+ LD      + + L  L +     +  I   
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 126
            + V E   ++ ++  G+ V   ET  A + F
Sbjct: 214 LALVAEAAHKIIVMYAGQVV---ETGKAHDIF 242

Length = 326

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 24/82 (29%), Positives = 41/82 (50%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           R +SGG+ +R++IA  + ++P+L+ LDE  S LD      + + LR L +   T    I 
Sbjct: 149 RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFIT 208

Query: 93  QPSSEVFELFDRLYLLSGGKTV 114
                V     R+ ++  G+ V
Sbjct: 209 HDLRLVQSFCQRVAVMDKGQIV 230

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 19/112 (16%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV---TQTLRCLSRDGRTVIASI 91
           +SGG+R+RV+I   ++  P +  LDEP S LD  AA  V    +  R   R GRT+I   
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD--AALRVQMRIEISRLHKRLGRTMIYVT 191

Query: 92  HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHF 143
           H    E   L D++ +L  G               AQ G P      P++ F
Sbjct: 192 HD-QVEAMTLADKIVVLDAG-------------RVAQVGKPLELYHYPANRF 229

Length = 369

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 3   WSEKRTLVERTIIEM----GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 58
           W ++    +R  IE+    G++D  D  I   +   ++ GE ++V IA+ +  +PRLL  
Sbjct: 125 WWQRFGWRKRRAIELLHRVGIKDHKD--IMRSYPYELTEGECQKVMIAIALANQPRLLIA 182

Query: 59  DEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 115
           DEPT+ ++        Q  R LSR   +  T I  I      + +  D++ +L  G+TV 
Sbjct: 183 DEPTNSMEPTTQ---AQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239

Query: 116 FGET 119
              +
Sbjct: 240 SAPS 243

Length = 330

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 34  GISGGERRRVSIAL-----EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
            +SGGE+   ++AL      +  RP L  LDE   GLD      + + +      G  VI
Sbjct: 77  QLSGGEKELSALALILALASLKPRP-LYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135

Query: 89  ASIHQPSSEVFELFDRLY 106
              H P  E+ EL D+L 
Sbjct: 136 VITHLP--ELAELADKLI 151

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH- 92
           G+SGG+++R+ IA  I + P +L LDEPTS LD  +   + + +  L      VI + H 
Sbjct: 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVT-HN 226

Query: 93  -QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
            Q ++ V +    +Y+   GK V +G+T   F
Sbjct: 227 MQQAARVSDYTAFMYM---GKLVEYGDTDTLF 255

Length = 272

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           SGG+++RV+IA  ++ +P++L LDE  S LD
Sbjct: 146 SGGQQQRVAIARAVVNKPKVLLLDESLSALD 176

Length = 375

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
             +SGG+R+R+ IA  ++  P +L LDE TS LD      +   LR   R G T I   H
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR---RRGCTCIIVAH 670

Query: 93  QPS 95
           + S
Sbjct: 671 RLS 673

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 4   SEKRTLVERTIIEMGLQDCA--DTVIG--NWHLRGISGGERRRVSIALEILMRPRLLFLD 59
           ++K+ L E  I+E  L+  A  D V    + +  G+SGG+++R+ +A  + + P +L LD
Sbjct: 150 NDKKQLEE--IVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD 207

Query: 60  EPTSGLDSAA 69
           EPTS LD  A
Sbjct: 208 EPTSALDPKA 217

Length = 286

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 14  IIEMGLQDCA--DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 69
           ++E  L+  A  D V  N H  G  +SGG+++R+ IA  + + P ++ +DEP S LD  +
Sbjct: 123 VVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVS 182

Query: 70  AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
              + + ++ L ++    IA +     +     D    L  G  V +G T   F
Sbjct: 183 TMRIEELMQELKQN--YTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234

Length = 251

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 13/120 (10%)

Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR-LLFLDEPT 62
           +E++  V     ++G+ D  D +        +SGG+R+RV++A   L+RP  +L LDEP 
Sbjct: 103 AEQQEKVVDAAQQVGIADYLDRLPEQ-----LSGGQRQRVALA-RCLVRPNPILLLDEPF 156

Query: 63  SGLDSA---AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           S LD         + + L C  R  RT++   H   S+   +  ++ ++S GK     + 
Sbjct: 157 SALDPLLREEMLALVKQL-CSERQ-RTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSDC 213

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 68
           +SGG+R RV++   +L +P+ L LDEP S LD A
Sbjct: 135 LSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168

Length = 213

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)

Query: 7   RTLVERTIIEMGLQDCA--DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPT 62
           R ++E+ I+E  L+  A  D V  +    G  +SGG+++R+ IA  I + P +L +DEPT
Sbjct: 195 RKILEK-IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPT 253

Query: 63  SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122
           S LD  A   + + +  L +    +I +     ++   + D       G     GET   
Sbjct: 254 SALDPIATAKIEELILELKKKYSIIIVT--HSMAQAQRISDETVFFYQGWIEEAGETKTI 311

Query: 123 F 123
           F
Sbjct: 312 F 312

Length = 329

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 3   WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 62
           W E R      ++ +GL+   D  + N     +S   ++ + IA  +++  +++ +DEPT
Sbjct: 119 WREMRVRAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAKVIIMDEPT 173

Query: 63  SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           S L +    ++   +  L ++G  ++   H+  +E+  + DR  ++  G +V  G  S
Sbjct: 174 SSLTNKEVDYLFLIMNQLRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVS 230

Length = 510

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 20/156 (12%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P +E+       +  +GL+              +SGG ++RV +A  + + P +L +DE
Sbjct: 132 VPRAEREERAAEALELVGLEGWEHKYPDE-----LSGGMQQRVGLARALAVDPDILLMDE 186

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
             S LD      +   L  L  +  +T++   H    E   L DR+ ++  G+ V     
Sbjct: 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLV----- 240

Query: 120 SAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVK 155
                   Q G P   L NP++ ++R      D+ K
Sbjct: 241 --------QVGTPEEILTNPANDYVREFFRGVDRAK 268

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 4   SEKRTLVERTIIEMGLQDCA--DTVIGNWHLR--GISGGERRRVSIALEILMRPRLLFLD 59
            +K+TL E  I+E  L+  A  D +    H    G+SGG+++R+ IA  + + P ++ +D
Sbjct: 135 KDKKTLDE--IVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMD 192

Query: 60  EPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 90
           EPTS LD  +   V + ++ L +D   +I +
Sbjct: 193 EPTSALDPISTLKVEELVQELKKDYSIIIVT 223

Length = 271

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           SGGE +RV+IA  +L    + F DEP+S LD        + +R L+ DG+ VI
Sbjct: 215 SGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI 267

Length = 591

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 33  RGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT--LRCLSRDGRTVI 88
           RGI  SGG+R+R+ +A  +     ++FLD+P S LD   +  + Q   L+ L  D RT++
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLV 196

Query: 89  ASIHQ 93
              H+
Sbjct: 197 LVTHK 201

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 24  DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
           DT +G    RG+  SGG+++R+SIA  +L+   +L LD+  S +D      +   LR   
Sbjct: 442 DTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR-QW 497

Query: 82  RDGRTVIASIHQPSS 96
            +GRTVI S H+ S+
Sbjct: 498 GEGRTVIISAHRLSA 512

Length = 569

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 24  DTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
           DTVIG     G+  SGG+R+R++IA  +L    +L LDE TS LD+ +   +   L  L 
Sbjct: 471 DTVIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527

Query: 82  RDGRTVIASIHQPSS 96
           ++ RT +   H+ S+
Sbjct: 528 KN-RTSLVIAHRLST 541

Length = 582

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++R+ IA  I   P +L LDEP S LD  A   V + +  L +D    IA +   
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD--YTIALVTHN 207

Query: 95  SSEVFELFDRLYLLS-----GGKTVYFGETSAAFEFF 126
             +   + D     S     G +T Y  E     + F
Sbjct: 208 MQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244

Length = 261

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 32  LRGISGGERRRVSIA---LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           ++GIS G +R +++    L  L +  LL +DEP +GL       + + L+ LS  G  +I
Sbjct: 187 IKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLI 246

Query: 89  ASIHQPS 95
            + H P 
Sbjct: 247 FTTHSPL 253

Length = 256

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 12/99 (12%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH- 92
           G+SGG+++R+ IA  I + P +L +DEP S LD  +   +   +  L +D   VI + H 
Sbjct: 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT-HN 206

Query: 93  -QPSSEVFELFDR--LYLLSG----GKTVYFGETSAAFE 124
            Q ++ V    D+   + L      G+ V   +T   F 
Sbjct: 207 MQQAARV---SDQTAFFNLEATGKPGRLVEIDDTEKIFS 242

Length = 258

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 7/114 (6%)

Query: 2   PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
           P+ E    V   + ++ + + AD     +    +SGG+++RV+IA  + + P ++ LDE 
Sbjct: 115 PYDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169

Query: 62  TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 115
           TS LD  A   +   +R +  +    I SI    SE  E  D + +++ G TVY
Sbjct: 170 TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEA-DHVIVMNKG-TVY 221

Length = 269

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIH 92
           +SGG+ R+++I   + M P ++ LDEPT+GLD  +   V + L+ L   + +T+I   H
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204

Length = 286

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +S G+R+ + +A  +L + ++L LDE T+ +D      + +T+R  +    TV+   H+ 
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR-EAFKDCTVLTIAHRL 198

Query: 95  SSEVFELFDRLYLLSGGKTVYFG 117
            + + +  DR+ +L  G+ V F 
Sbjct: 199 DT-IID-SDRILVLDKGRVVEFD 219

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 11/98 (11%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIH- 92
           +SGG+++R+ IA  I M+P +L +DEP S LD  +   V +   CL  ++  T+I   H 
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEEL--CLELKEQYTIIMVTHN 219

Query: 93  -QPSSEVFE---LFDRLYLLSG---GKTVYFGETSAAF 123
            Q +S V +    F+      G   GK V F  T   F
Sbjct: 220 MQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257

Length = 274

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 26/91 (28%), Positives = 41/91 (45%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           G SGGE++R  I    L+   L  LDE  SGLD  A   + + +  L     ++I   H 
Sbjct: 151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
                +   D ++++  GK +  G+   A E
Sbjct: 211 QRLLDYIKPDYVHVMQNGKIIKTGDAELAKE 241

Length = 252

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 9   LVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 67
           LVER++ +  + D C D +  N     +SGG+++R+ IA  I + P ++ +DEP S LD 
Sbjct: 130 LVERSLRKAAVWDECKDKL--NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDP 187

Query: 68  AAAFFVTQTLRCLSRDGRTVI 88
            +   + +T+  L ++   VI
Sbjct: 188 ISTLKIEETMHELKKNFTIVI 208

Length = 269

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 32  LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           +  +SGGE +RV+IA  +     L  LDEP++ LD      V + +R
Sbjct: 453 VDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499

Length = 591

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH- 92
           G+SGG+++R+ IA  + + P +L +DEP S LD  A   + + +  L     T+I   H 
Sbjct: 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR-YTIIIVTHN 207

Query: 93  -QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
            Q ++ V ++    Y+   GK +  G T   F
Sbjct: 208 MQQAARVSDVTAFFYM---GKLIEVGPTEQIF 236

Length = 253

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           + +R  +     +MG++D    + G      +SGG+R+RV++A  ++    +L LDEP S
Sbjct: 104 AAQREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEPFS 158

Query: 64  GLDSA 68
            LD A
Sbjct: 159 ALDPA 163

Length = 232

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 7/81 (8%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG +++V I+  +   P ++  DEPT G+D  A   + + +R L+ DG+ ++      
Sbjct: 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMV---- 465

Query: 95  SSEVFELF---DRLYLLSGGK 112
           SSE+ E+    DR+ +   G+
Sbjct: 466 SSELPEIITVCDRIAVFCEGR 486

Length = 510

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 20/146 (13%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P +E+       +  +GL+  AD          +SGG ++RV +A  +   P +L +DE
Sbjct: 136 VPKAEREERALEALELVGLEGYADKYPNE-----LSGGMQQRVGLARALANDPDILLMDE 190

Query: 61  PTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
             S LD         + L   ++  +T++   H    E   + DR+ ++  G+ V     
Sbjct: 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHD-LDEALRIGDRIAIMKDGEIV----- 244

Query: 120 SAAFEFFAQAGFPCPALRNPSDHFLR 145
                   Q G P   L NP++ ++R
Sbjct: 245 --------QVGTPEEILLNPANDYVR 262

Length = 386

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 20/146 (13%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           MP +E+R  V+  +  +GL   AD   G      +SGG ++RV +A        +L +DE
Sbjct: 136 MPKAERRKRVDEQLELVGLAQWADRKPGE-----LSGGMQQRVGLARAFATEAPILLMDE 190

Query: 61  PTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           P S LD         + L   S+  +T++   H    E  ++ +R+ ++ GG+ +     
Sbjct: 191 PFSALDPLIRTQLQDELLELQSKLKKTIVFVSHD-LDEALKIGNRIAIMEGGRII----- 244

Query: 120 SAAFEFFAQAGFPCPALRNPSDHFLR 145
                   Q G P   + NP++ ++ 
Sbjct: 245 --------QHGTPEEIVLNPANDYVA 262

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++R+ IA  +  +P +L  DEPT+ LD      +      L +D  T++   H P
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFP 205

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAF 123
             +   + D +  L  G+ V +G T   F
Sbjct: 206 -QQAARISDYVAFLYKGQIVEWGPTREVF 233

Length = 250

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++RV++A  I +RP ++ LDE TS LD      + + +  +    +  + SI   
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 129
             E     DR+ ++  G+ +   + +A  E FA +
Sbjct: 201 LDEAAS-SDRILVMKAGEII---KEAAPSELFATS 231

Length = 277

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 90
           G+SGG+++R+ IA  I + P ++ +DEP S LD  +   +   +  L  D   VI +
Sbjct: 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVT 202

Length = 250

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQ 93
           +SGG+++RV++A  +   P LL LDEP S LD+     +   +R L R  G T I   H 
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194

Query: 94  PSSEVFELFDRLYLLSGGKTVYFG 117
              E   + DR+ +++ G     G
Sbjct: 195 -QEEALSMADRIVVMNHGVIEQVG 217

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           +E+R  ++  +  +GL D  D +        +S G+++ + I + +   P+LL LDEP +
Sbjct: 122 AEERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVA 176

Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           G+  A      + L+ L+    +++   H
Sbjct: 177 GMTDAETEKTAELLKSLAG-KHSILVVEH 204

Length = 249

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 15/33 (45%), Positives = 27/33 (81%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 67
           ISGG+++RV++A  ++++P++L  DEP S LD+
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169

Length = 351

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 30  WHL--RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 68
           W L     SGGE++RV+IA   ++   +L LDEPT+ LD+ 
Sbjct: 146 WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAT 186

Length = 235

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +S G+R+ + +A  +L RPR+L LDE T+ +D A    + +T+R    +  T++   H+ 
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNS-TILTIAHRL 184

Query: 95  SSEVFELFDRLYLLSGGKTVYFG 117
            + +   +D++ ++  G+   + 
Sbjct: 185 RTII--DYDKILVMDAGEVKEYD 205

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH-Q 93
           +SGG+++R+ IA  + + P +L +DEP S LD  +   V + +  L +D   VI + + Q
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQ 206

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
            ++ V +     Y+   G+ V + +T   F
Sbjct: 207 QAARVSDKTAFFYM---GEMVEYDDTKKIF 233

Length = 250

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG +++  +A  +L+ P++L LDEPT G+D  A + + + +  L + G  +I  I   
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIV-ISSE 464

Query: 95  SSEVFELFDRLYLLSGGK 112
             EV  L DR+ ++  GK
Sbjct: 465 LPEVLGLSDRVLVMHEGK 482

Length = 506

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           +SGGE++R+S+   +   P++L LDE TS LD
Sbjct: 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169

Length = 225

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 7/46 (15%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80
           +SGGER RV +A  +     +L LDEPT+ LD        +TLR L
Sbjct: 444 LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD-------VETLRAL 482

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 38  GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQP 94
           GE ++V IA+ +  +PRLL  DEPT+ ++        Q  R L+R   +  T I  I   
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQ---AQIFRLLTRLNQNNNTTILLISHD 218

Query: 95  SSEVFELFDRLYLLSGGKTV 114
              + +  D++ +L  G+TV
Sbjct: 219 LQMLSQWADKINVLYCGQTV 238

Length = 330

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 32  LRGISGGERRRVSIALEILM---RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           L  +SGGE +R+ +A E+L    +P L  LDEPT+GL +     +   L+ L+  G TV+
Sbjct: 807 LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV 866

Query: 89  ASIH 92
              H
Sbjct: 867 IIEH 870

Length = 1809

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH- 92
           G+SGG+++R+ IA  I + P ++ +DEP S LD  A   V + +  L R   T++   H 
Sbjct: 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHS 221

Query: 93  -QPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
            Q ++ V +   R      G  V  G+T   F
Sbjct: 222 MQQAARVSQ---RTAFFHLGNLVEVGDTEKMF 250

Length = 267

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           ISGG+++R+++A  +L   ++L LDE TS LD+     +   L  L+   +T+I   H+ 
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL--LNLQDKTIIFVAHRL 669

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 131
           S  V +  D++ +L  GK +   E  +  E   + GF
Sbjct: 670 S--VAKQSDKIIVLDHGKII---EQGSHDELLDRNGF 701

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           E++  +E  +  +GL D AD + G      +S G+++ + I + ++  P+LL LDEP +G
Sbjct: 119 EEKDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173

Query: 65  LDSAAAFFVTQTLRCLSRDGRTVI 88
           +         + L+ L+    +V+
Sbjct: 174 MTDEETEKTAELLKSLAGK-HSVV 196

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 13/127 (10%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+++RV++A  + + P++L LDEP   LD+     + + LR L  + +     +   
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKV 154
             E  E+ DR+ ++S G                QAG P    R P+  F+     + +++
Sbjct: 197 QEEAMEVADRVVVMSQGN-------------IEQAGTPDQVWREPATRFVLEFMGEVNRL 243

Query: 155 KATLKGS 161
           + T++G 
Sbjct: 244 QGTIRGG 250

Length = 353

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           +S GE R+  +   ++  P LL LDEP  GLD A+   + + L  L + G T++
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189

Length = 490

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           E    V + +   G+   AD  +       +SGG+R+R  IA+ +     ++ LDEPT+ 
Sbjct: 119 EDEEAVTKAMQATGITHLADQSVDT-----LSGGQRQRAWIAMVLAQETAIMLLDEPTTW 173

Query: 65  LDSAAAFFVTQTLRCLSRD-GRTVIASIH 92
           LD +    + + L  L+R+ G T+ A +H
Sbjct: 174 LDISHQIDLLELLSELNREKGYTLAAVLH 202

Length = 265

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 9   LVERTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           +VE+++ +  L  +  D +  N +   +SGG+++R+ IA  + + P ++ +DEPTS LD
Sbjct: 126 IVEQSLKKSALWNEVKDKL--NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182

Length = 254

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-AAFFVTQTLRCLSRDGRTVIASIHQ 93
           +S G+++R+++    L    +L  DE  +  D A   FF  + L  L R G+T+I   H 
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH- 529

Query: 94  PSSEVFELFDRLYLLSGGKTV 114
              + FEL D++  L+ G  V
Sbjct: 530 -DDQYFELADQIIKLAAGCIV 549

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 39.7 bits (94), Expect = 0.004
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 7/45 (15%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 80
           SGGER R+ +A  +     +L LDEPT+ LD        +TLR L
Sbjct: 447 SGGERNRLHLAKTLKQGGNVLLLDEPTNDLD-------VETLRAL 484

Length = 556

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 33  RGISGGERRRVSIALEILMRP-RLLFLDEPTSGLD 66
           + +SGGER R+ +A  + ++P  LL LDEPT+ LD
Sbjct: 439 KALSGGERNRLLLA-RLFLKPSNLLILDEPTNDLD 472

Length = 635

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 27/89 (30%), Positives = 40/89 (44%)

Query: 34  GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           G SGGE++R  I    ++ P L  LDE  SGLD  A   V   +  L    R+ I   H 
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHY 204

Query: 94  PSSEVFELFDRLYLLSGGKTVYFGETSAA 122
                +   D +++L  G+ V  G+ +  
Sbjct: 205 QRILDYIKPDYVHVLYQGRIVKSGDFTLV 233

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	546
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.94
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.94
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.93
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.92
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.92
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.92
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.92
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.92
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.92
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.9
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.9
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.9
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.9
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.89
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.89
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.89
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.89
COG1123	539	ATPase components of various ABC-type transport sy	99.89
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.89
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.89
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.89
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.89
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.89
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.88
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.88
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.88
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.88
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.88
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.88
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.88
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.88
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.88
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.88
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.88
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.88
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.88
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.88
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.88
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.88
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.88
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.88
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.88
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.88
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.88
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.88
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.87
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.87
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.87
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.87
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.87
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.87
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.87
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.87
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.87
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.87
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.87
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.87
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.87
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.87
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.87
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.87
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.87
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.87
COG4172	534	ABC-type uncharacterized transport system, duplica	99.87
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.87
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.87
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.87
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.87
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.87
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.86
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.86
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.86
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.86
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.86
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.86
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.86
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.86
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.86
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.86
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.86
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.86
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.86
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.86
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.86
COG1123	539	ATPase components of various ABC-type transport sy	99.86
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.86
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.86
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.86
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.86
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.86
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.86
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.86
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.86
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.86
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.86
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.86
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.86
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.86
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.86
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.86
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.86
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.86
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.86
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.85
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.85
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.85
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.85
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.85
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.85
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.85
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.85
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.85
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.85
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.85
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.85
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.85
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.85
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.85
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.85
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.85
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.85
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.85
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.85
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.85
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.85
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.84
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.84
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.84
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.84
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.84
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.84
PRK10908	222	cell division protein FtsE; Provisional	99.84
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.84
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.84
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.84
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.84
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.84
COG4172	534	ABC-type uncharacterized transport system, duplica	99.84
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.84
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.84
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.84
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.84
PRK10938	490	putative molybdenum transport ATP-binding protein	99.84
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.84
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.84
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.84
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.84
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.84
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.84
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.84
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.84
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.84
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.83
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.83
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.83
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.83
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.83
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.83
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.83
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.83
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.83
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.83
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.83
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.83
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.83
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.83
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.83
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.82
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.82
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.82
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.82
COG4559	259	ABC-type hemin transport system, ATPase component	99.82
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.82
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.82
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.82
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.82
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.82
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.81
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.81
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.81
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.81
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.81
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.81
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.81
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.81
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.81
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.81
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.81
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.81
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.81
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.81
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.81
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.8
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.8
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.8
COG4987	573	CydC ABC-type transport system involved in cytochr	99.8
COG4181	228	Predicted ABC-type transport system involved in ly	99.8
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.8
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.8
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.8
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.8
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.79
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.79
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.79
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.79
COG4988	559	CydD ABC-type transport system involved in cytochr	99.79
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.79
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.79
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.79
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.79
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.78
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.78
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.78
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.78
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.78
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.78
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.78
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.78
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.78
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.78
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.78
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.78
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.78
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.78
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.78
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.77
PRK10938	490	putative molybdenum transport ATP-binding protein	99.77
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.77
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.77
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.77
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.77
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.77
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.77
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.77
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.77
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.77
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.76
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.76
cd03246	173	ABCC_Protease_Secretion This family represents the	99.76
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.76
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.76
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.76
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.76
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.76
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.75
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.75
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.75
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.75
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.75
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.75
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.75
PRK13409	590	putative ATPase RIL; Provisional	99.74
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.74
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.74
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.74
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.74
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.74
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.74
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.74
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.73
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.73
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.73
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.73
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.73
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.72
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.72
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.72
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.72
PRK13409	590	putative ATPase RIL; Provisional	99.72
PRK11147	635	ABC transporter ATPase component; Reviewed	99.72
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.72
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.72
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.71
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.71
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.71
PLN03073	718	ABC transporter F family; Provisional	99.71
PLN03232	1495	ABC transporter C family member; Provisional	99.71
PLN03073	718	ABC transporter F family; Provisional	99.7
PLN03130	1622	ABC transporter C family member; Provisional	99.7
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.7
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.7
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.69
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.69
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.69
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.69
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.69
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.69
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.69
PLN03232	1495	ABC transporter C family member; Provisional	99.68
PTZ00243	1560	ABC transporter; Provisional	99.68
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.68
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.67
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.67
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.67
PLN03130	1622	ABC transporter C family member; Provisional	99.67
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.67
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.67
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.66
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.66
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.66
PRK11147	635	ABC transporter ATPase component; Reviewed	99.65
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.64
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.63
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.63
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.63
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.62
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.61
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.61
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.61
COG0488	530	Uup ATPase components of ABC transporters with dup	99.6
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.6
PTZ00243	1560	ABC transporter; Provisional	99.6
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.6
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.59
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.59
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.58
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.58
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.57
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.57
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.55
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.52
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.52
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.5
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.48
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.48
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.46
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.45
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.44
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.44
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.42
COG0488	530	Uup ATPase components of ABC transporters with dup	99.39
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.38
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.35
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.35
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.34
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.32
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.32
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.31
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.31
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.28
PRK10869	553	recombination and repair protein; Provisional	99.27
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.27
KOG0062	582	consensus ATPase component of ABC transporters wit	99.27
PHA02562	562	46 endonuclease subunit; Provisional	99.25
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.24
KOG0062	582	consensus ATPase component of ABC transporters wit	99.24
COG4178	604	ABC-type uncharacterized transport system, permeas	99.23
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.19
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.17
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.14
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.13
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.12
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.11
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.09
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.09
PRK03918	880	chromosome segregation protein; Provisional	99.08
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.05
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.99
PRK01156	895	chromosome segregation protein; Provisional	98.98
PRK15066	257	inner membrane transport permease; Provisional	98.96
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.92
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.91
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.91
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.9
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.85
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.83
PRK00064	361	recF recombination protein F; Reviewed	98.82
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.77
PRK02224	880	chromosome segregation protein; Provisional	98.77
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.76
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.76
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	98.69
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.61
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.57
TIGR00611	365	recf recF protein. All proteins in this family for	98.55
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.54
PRK14079	349	recF recombination protein F; Provisional	98.53
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.52
COG0842	286	ABC-type multidrug transport system, permease comp	98.48
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.44
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.42
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.4
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.33
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.31
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.27
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.26
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.24
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.22
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.15
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.12
TIGR01248	152	drrC daunorubicin resistance protein C. The model	98.1
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.1
PF06422	103	PDR_CDR: CDR ABC transporter; InterPro: IPR010929	98.06
PRK13695	174	putative NTPase; Provisional	98.02
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.86
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	97.78
PRK13830	818	conjugal transfer protein TrbE; Provisional	97.77
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.71
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	97.64
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.61
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.5
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.47
cd01128	249	rho_factor Transcription termination factor rho is	97.46
PRK06067	234	flagellar accessory protein FlaH; Validated	97.37
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.32
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.21
PRK13891	852	conjugal transfer protein TrbE; Provisional	97.07
PF13175	415	AAA_15: AAA ATPase domain	97.03
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	96.99
COG3910	233	Predicted ATPase [General function prediction only	96.88
COG1277	278	NosY ABC-type transport system involved in multi-c	96.85
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	96.85
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	96.72
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	96.44
PF08370	65	PDR_assoc: Plant PDR ABC transporter associated; I	96.33
COG4637	373	Predicted ATPase [General function prediction only	96.27
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.21
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.16
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.15
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.0
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	95.93
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	95.8
PF13166	712	AAA_13: AAA domain	95.73
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	95.68
PRK05399	854	DNA mismatch repair protein MutS; Provisional	95.47
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.17
COG4587	268	ABC-type uncharacterized transport system, permeas	94.98
PRK14088	440	dnaA chromosomal replication initiation protein; P	94.89
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	94.67
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	94.4
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	94.3
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	93.91
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	93.88
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	93.71
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	93.29
PRK08699	325	DNA polymerase III subunit delta'; Validated	93.2
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.15
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	93.12
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	92.73
KOG0933	1174	consensus Structural maintenance of chromosome pro	92.68

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.7e-87  Score=743.31  Aligned_cols=472  Identities=39%  Similarity=0.643  Sum_probs=409.7

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++++++|++++++|||++|+||+||+...||+||||||||+||.+|++||+||||||||||||+.++.++++.||++
T Consensus       137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~l  216 (613)
T KOG0061|consen  137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL  216 (613)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHH
Confidence            46789999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhc
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKG  160 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~  160 (546)
                      |++|+|||+|+|||+++++++||++++|++|+++|+|+++++.+||++.|+|||++.||+||++++++.+ +.....   
T Consensus       217 A~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~-~~~~~~---  292 (613)
T KOG0061|consen  217 ARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD-SGTREL---  292 (613)
T ss_pred             HhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC-CCchhH---
Confidence            9999999999999999999999999999999999999999999999999999999999999999998853 111000   


Q ss_pred             cccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHH-hhhhccCccccCCCCCCCHHHHHHHHHHHHHHHhhc
Q 009033          161 SMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVE-GISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSR  239 (546)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~R  239 (546)
                                      ...+......+.++..+...+...... ...+  ....+ ....++|+.|++.|++|.+++++|
T Consensus       293 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~s~~~q~~~L~~R~~~~~~R  353 (613)
T KOG0061|consen  293 ----------------EEAVRIAKLINKFSQTDNLKKTLEALEKSLST--SKKVE-IGTSPSWWTQFKILLKRSLKNIRR  353 (613)
T ss_pred             ----------------HhHHHHHHHhhhccccchhhhhHHHHhhhccc--ccccc-cccCCcHHHHHHHHHHHHhHHHhh
Confidence                            001111112222221000000000000 0100  00110 112789999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHhh-hhhhHHhhhHHHHHHhhCCCcchHHH
Q 009033          240 DFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG-GFPSFVEDMKVFQRERLNGHYGVTAF  318 (546)
Q Consensus       240 d~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~~-~~p~~~~er~vf~RE~~~g~Y~~~~y  318 (546)
                      ||.+.+.|+++.+++|+++|++||+++++..++++|.+++|+...++.|.++. +++.|+.||++|.||+.+|+|+.++|
T Consensus       354 ~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y  433 (613)
T KOG0061|consen  354 DPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSY  433 (613)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHH
Confidence            99999999999999999999999999999999999999999999999888765 69999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 009033          319 VIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFML  398 (546)
Q Consensus       319 ~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~l  398 (546)
                      ++|++++++|+.++.+++|++|+|||+|+++++.+|++|++++++..++++++++++++++||..+|+++++++.+.|++
T Consensus       434 ~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l  513 (613)
T KOG0061|consen  434 YLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLL  513 (613)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCC--CCCCcCHHHHHhhhcCcccccchhHHHHHH
Q 009033          399 VSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSP--DLPKIPGEYVLENVFQIDVRRSKWIDLSVI  476 (546)
Q Consensus       399 ~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~--~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL  476 (546)
                      |+|||++.++||++ |+ |++|+||++|++||+++|||.+....|...  ..+..+|++++.+ .+++. .+.|.|+.++
T Consensus       514 ~~G~fi~~~~ip~~-~~-w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~~l~~l  589 (613)
T KOG0061|consen  514 FGGFFINFDSIPKY-FR-WISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQ-LGFED-SSFWLDLLVL  589 (613)
T ss_pred             HhhhhcCcccccHH-HH-HHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHh-cCCcc-cccchhHHHH
Confidence            99999999999973 43 599999999999999999998733344332  3477899999998 88864 4699999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccc
Q 009033          477 FSMIISYRIIFFVMIKISEDVTP  499 (546)
Q Consensus       477 ~~~~~~f~~l~~~~l~~~~~~~~  499 (546)
                      ++++++||+++|++|+++.+.++
T Consensus       590 ~~~~~~~~il~y~~L~~~~~~~~  612 (613)
T KOG0061|consen  590 LAFIVFFRVLGYLALRFRVKRKR  612 (613)
T ss_pred             HHHHHHHHHHHHHHHHhhccccC
Confidence            99999999999999999877653

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=3.5e-83  Score=715.73  Aligned_cols=472  Identities=30%  Similarity=0.516  Sum_probs=413.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCc-ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNW-HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++++++++++++++.+||.+++||.+|+. ..++||||||||++||++|+++|++++|||||+|||+.++.++++.|+++
T Consensus       133 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l  212 (617)
T TIGR00955       133 TKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL  212 (617)
T ss_pred             CHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHH
Confidence            45677889999999999999999999975 36899999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhc
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKG  160 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~  160 (546)
                      +++|+|||+++|||+++++++||++++|++|+++|+|+++++.+||++.|++||+..||+|++++.++.+.+.       
T Consensus       213 ~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~-------  285 (617)
T TIGR00955       213 AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGS-------  285 (617)
T ss_pred             HhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccc-------
Confidence            9889999999999988999999999999999999999999999999999999999999999999887654211       


Q ss_pred             cccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhccCc------cccCCCCCCCHHHHHHHHHHHHH
Q 009033          161 SMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGT------VLDAGGSQASFLMQAFTLTKRSF  234 (546)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~Q~~~L~~R~~  234 (546)
                                    +....+..+.+.+.|++++...+..+........++.      .....++.++|+.|+.+|++|++
T Consensus       286 --------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~  351 (617)
T TIGR00955       286 --------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSW  351 (617)
T ss_pred             --------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHH
Confidence                          0001233445666777665544433332211111000      01123457899999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHh-hhhhhHHhhhHHHHHHhhCCCc
Q 009033          235 VNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRERLNGHY  313 (546)
Q Consensus       235 ~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~-~~~p~~~~er~vf~RE~~~g~Y  313 (546)
                      ++++|||.+++.|+++.+++|+++|++|++++++++++++|.|++|+++.+++|.++ ..++.|+.||++|+||+.+|+|
T Consensus       352 ~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y  431 (617)
T TIGR00955       352 LSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLY  431 (617)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence            999999999999999999999999999999999999999999999999988888764 6689999999999999999999


Q ss_pred             chHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 009033          314 GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQ  393 (546)
Q Consensus       314 ~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~  393 (546)
                      ++++|++|++++++|+.++.+++|.+|+|||+|+++++.+|++|++++++..++++++++++++++|+..+|+.+++++.
T Consensus       432 ~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~  511 (617)
T TIGR00955       432 RVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFV  511 (617)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcc-cCCCC---CCCCcCHHHHHhhhcCcccccch
Q 009033          394 GIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWF-DNQSP---DLPKIPGEYVLENVFQIDVRRSK  469 (546)
Q Consensus       394 ~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f-~~~~~---~~~~~~G~~vL~~~~~~~~~~~~  469 (546)
                      .++++|+||++++++||+ +|+| ++|+||++||+++++.|||.|..+ +|...   +.|..+|+++|+. ||++.+ +.
T Consensus       512 ~~~~lf~G~~i~~~~ip~-~~~W-~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~-~g~~~~-~~  587 (617)
T TIGR00955       512 IPFLLFGGFFINSDSIPV-YFKW-LSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILET-LSFRNA-DL  587 (617)
T ss_pred             HHHHHHhhcccChhhccH-HHHH-HHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHh-cCCCcc-cH
Confidence            999999999999999997 5776 999999999999999999999876 44321   2266789999997 999754 58


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009033          470 WIDLSVIFSMIISYRIIFFVMIKISEDVT  498 (546)
Q Consensus       470 w~~~~iL~~~~~~f~~l~~~~l~~~~~~~  498 (546)
                      |.|+++|+++.++|++++|++|+++.+.+
T Consensus       588 ~~~~~il~~~~~~~~~l~~~~L~~~~~~~  616 (617)
T TIGR00955       588 YLDLIGLVILIFFFRLLAYFALRIRIRRK  616 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999876543

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=9.9e-82  Score=705.27  Aligned_cols=461  Identities=27%  Similarity=0.441  Sum_probs=385.0

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++++++++++++.+||++++||.+|+...++||||||||++||++|+++|+||+|||||+|||+.++.++++.|+++++
T Consensus       175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~  254 (659)
T PLN03211        175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ  254 (659)
T ss_pred             HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Confidence            45667889999999999999999999988999999999999999999999999999999999999999999999999998


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhccc
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSM  162 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~~~  162 (546)
                      +|+|||+++|||+++++++||++++|++|+++|+|+++++.+||++.|++||.+.||+||+++.++.+....     +. 
T Consensus       255 ~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~-----~~-  328 (659)
T PLN03211        255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD-----GV-  328 (659)
T ss_pred             CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC-----Cc-
Confidence            899999999999778999999999999999999999999999999999999999999999999876542100     00 


Q ss_pred             cccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHh--hhh---c-----cCccc--cCCCCCCCHHHHHHHHH
Q 009033          163 KLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEG--ISK---V-----KGTVL--DAGGSQASFLMQAFTLT  230 (546)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~--~~~---~-----~~~~~--~~~~~~~s~~~Q~~~L~  230 (546)
                      .           +.......+.+.+.|++... ....+....  ...   .     .....  ......++|++|+.+|+
T Consensus       329 ~-----------~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~  396 (659)
T PLN03211        329 S-----------EREKPNVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILL  396 (659)
T ss_pred             c-----------ccccchHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHH
Confidence            0           00001112234445543211 111011000  000   0     00000  01124578999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHH-hhhhhhHHhhhHHHHHHhh
Q 009033          231 KRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMS-IGGFPSFVEDMKVFQRERL  309 (546)
Q Consensus       231 ~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~-~~~~p~~~~er~vf~RE~~  309 (546)
                      +|++++ +||+.+.+.|+++++++|+++|++||+++  ..++++|.|++||++.++.+.+ +..++.|+.||+||+||+.
T Consensus       397 ~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~  473 (659)
T PLN03211        397 QRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERA  473 (659)
T ss_pred             HHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence            999998 89999999999999999999999999985  6789999999999988877654 5789999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 009033          310 NGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITG  389 (546)
Q Consensus       310 ~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~  389 (546)
                      +|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+|++|++++++..++++++|+++++++|+..+|+.++
T Consensus       474 ~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~  553 (659)
T PLN03211        474 SGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIV  553 (659)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCc-----ccCCCC-----CCCCcCHHHHHhh
Q 009033          390 AGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLW-----FDNQSP-----DLPKIPGEYVLEN  459 (546)
Q Consensus       390 ~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~-----f~~~~~-----~~~~~~G~~vL~~  459 (546)
                      +++++++++|+||+++  +||+ +|+| ++|+||++||+|+++.|||.+.+     ++|..+     +.|...++.++. 
T Consensus       554 ~~~~~~~~lfsGf~i~--~ip~-~~~W-~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~-  628 (659)
T PLN03211        554 TVTMLAFVLTGGFYVH--KLPS-CMAW-IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG-  628 (659)
T ss_pred             HHHHHHHHHHhhhhHh--hchH-HHHH-HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-
Confidence            9999999999999996  7997 5776 99999999999999999997653     245322     113334433332 


Q ss_pred             hcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009033          460 VFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISE  495 (546)
Q Consensus       460 ~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~  495 (546)
                            +.+.|.|+++|++++++||+++|++|++.+
T Consensus       629 ------~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~  658 (659)
T PLN03211        629 ------QISPATSVSVLIFMFVGYRLLAYLALRRIK  658 (659)
T ss_pred             ------ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                  235899999999999999999999998643

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=9.5e-82  Score=753.54  Aligned_cols=477  Identities=21%  Similarity=0.382  Sum_probs=414.3

Q ss_pred             HHHHHH-HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            4 SEKRTL-VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         4 ~~~~~~-v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++++++ ++++++.+||++++||++|+..+++|||||||||+||++|+++|+|++|||||+|||+.++.++++.|+++++
T Consensus       178 ~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~  257 (1394)
T TIGR00956       178 EEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSAN  257 (1394)
T ss_pred             HHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHH
Confidence            343334 5778999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhcc
Q 009033           83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGS  161 (546)
Q Consensus        83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~~  161 (546)
                       .|+|||+++|||+++++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+++.++.+.....   .+ 
T Consensus       258 ~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~---~~-  333 (1394)
T TIGR00956       258 ILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIK---PG-  333 (1394)
T ss_pred             hcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhcc---cc-
Confidence             4999999999998999999999999999999999999999999999999999999999999987654311100   00 


Q ss_pred             ccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhh------------------ccCccccCCCCCCCHH
Q 009033          162 MKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISK------------------VKGTVLDAGGSQASFL  223 (546)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~s~~  223 (546)
                          .+ ...|       ...+.+++.|++|+..+...+.++...+                  ..........+..|++
T Consensus       334 ----~e-~~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  401 (1394)
T TIGR00956       334 ----YE-KKVP-------RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFS  401 (1394)
T ss_pred             ----cc-ccCC-------CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHH
Confidence                00 0001       1123466777777655444333321100                  0000111235678999


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHhhhhhhHHhhhHH
Q 009033          224 MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV  303 (546)
Q Consensus       224 ~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~~~~p~~~~er~v  303 (546)
                      +|+++|++|++++++|||.+++.|+++.+++|+++|++||+++++++++++|.|++||++.+.+|+++..++.++.||+|
T Consensus       402 ~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i  481 (1394)
T TIGR00956       402 MQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPI  481 (1394)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q 009033          304 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFL  383 (546)
Q Consensus       304 f~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~  383 (546)
                      |+||+.+|+|++++|++|++++++|+.++.+++|++|+|||+||++++.+|++|+++++++.+++.++++++++++||..
T Consensus       482 ~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~  561 (1394)
T TIGR00956       482 VEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLS  561 (1394)
T ss_pred             eeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCC--C---------------
Q 009033          384 MGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS--P---------------  446 (546)
Q Consensus       384 ~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~--~---------------  446 (546)
                      +|+.+++++++++++|+||++++++||+ ||+| ++|+||++||+||++.|||.|.+++|..  |               
T Consensus       562 ~A~~~~~~~~~~~~lf~Gf~i~~~~mp~-~~~W-~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C  639 (1394)
T TIGR00956       562 EAMTPAAILLLALSIYTGFAIPRPSMLG-WSKW-IYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVC  639 (1394)
T ss_pred             HHHHHHHHHHHHHHHHcccccChhhccH-HHHH-HHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccc
Confidence            9999999999999999999999999997 5666 9999999999999999999999887741  1               


Q ss_pred             -------CCCCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 009033          447 -------DLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTP  499 (546)
Q Consensus       447 -------~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~~  499 (546)
                             |.++++|+++|+..|+++.+ +.|.|+++|++++++|++++++++++.+....
T Consensus       640 ~~~g~~~g~~~~~G~~~L~~~~~~~~~-~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~  698 (1394)
T TIGR00956       640 TVVGAEPGQDYVDGDDYLKLSFQYYNS-HKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQ  698 (1394)
T ss_pred             cCCCCcCCcccccHHHHHHhcCCcccc-hhhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence                   12356999999966888754 59999999999999999999999998764443

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.8e-79  Score=730.40  Aligned_cols=467  Identities=25%  Similarity=0.379  Sum_probs=409.4

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++++++++++++.+||++++|+.+|+..+++|||||||||+||++|+++|+||||||||+|||+.++..+++.|+++++
T Consensus       988 ~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~ 1067 (1470)
T PLN03140        988 KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1067 (1470)
T ss_pred             HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence            45667789999999999999999999877889999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeC-CeEEEecCh----hHHHHHHHHc-CCC-CCCCCCChhHHHHHhhcChhhHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFGET----SAAFEFFAQA-GFP-CPALRNPSDHFLRCINSDFDKVK  155 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~-G~~v~~G~~----~~~~~~f~~~-g~~-~p~~~~p~d~~l~~~~~~~~~~~  155 (546)
                      +|+|||+++|||+.++++.||++++|++ |+++|+|++    +++.+||+++ |.+ ||+..||+||+++.++.+.+.  
T Consensus      1068 ~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-- 1145 (1470)
T PLN03140       1068 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-- 1145 (1470)
T ss_pred             CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--
Confidence            9999999999998789999999999995 899999996    5789999997 675 999999999999876542100  


Q ss_pred             HhhhccccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhcc-Cc--cccCCCCCCCHHHHHHHHHHH
Q 009033          156 ATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVK-GT--VLDAGGSQASFLMQAFTLTKR  232 (546)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~s~~~Q~~~L~~R  232 (546)
                                              +....+.+.|++|+.++...+.+++..... +.  .....++.+++++|+.+|++|
T Consensus      1146 ------------------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R 1201 (1470)
T PLN03140       1146 ------------------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWK 1201 (1470)
T ss_pred             ------------------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHH
Confidence                                    001236678888877665554443332111 11  111245788999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCCh---hhHHhhhhhHHHHHHHHHHHHh-hhhhhHHhhhHHHHHHh
Q 009033          233 SFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRER  308 (546)
Q Consensus       233 ~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~---~~i~~r~~~lf~~~~~~~f~~~-~~~p~~~~er~vf~RE~  308 (546)
                      +++++||||.+++.|+++.+++|+++|++||+++++.   .+++++.|++|+++.+..+... ..+|.|..||+||+||+
T Consensus      1202 ~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr 1281 (1470)
T PLN03140       1202 QWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRER 1281 (1470)
T ss_pred             HHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999875   4677889999998888777554 56799999999999999


Q ss_pred             hCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 009033          309 LNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIIT  388 (546)
Q Consensus       309 ~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~  388 (546)
                      .+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++..|++|+++++++.++++++|+++++++||..+|.++
T Consensus      1282 ~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~ 1361 (1470)
T PLN03140       1282 AAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIF 1361 (1470)
T ss_pred             hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCC-CCcCHHHHHhhhcCccccc
Q 009033          389 GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL-PKIPGEYVLENVFQIDVRR  467 (546)
Q Consensus       389 ~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~-~~~~G~~vL~~~~~~~~~~  467 (546)
                      ++++++++++|+||++++++||+ +|+| ++|+||++|+++|++.|||.|.+++|..++. +..+|++++.++||++.+ 
T Consensus      1362 ~~~~~~~~~lf~Gf~i~~~~iP~-~~~W-~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 1438 (1470)
T PLN03140       1362 AAAFYGLFNLFSGFFIPRPKIPK-WWVW-YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPD- 1438 (1470)
T ss_pred             HHHHHHHHHHHeeeccChHHCch-HHHH-HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcc-
Confidence            99999999999999999999997 6886 9999999999999999999998887665542 235788887777999754 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009033          468 SKWIDLSVIFSMIISYRIIFFVMIKISEDVT  498 (546)
Q Consensus       468 ~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~  498 (546)
                      ..|.+++++++++++|++++++++++.+..+
T Consensus      1439 ~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140       1439 FMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence            5899999999999999999999999876543

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=6.1e-79  Score=727.49  Aligned_cols=470  Identities=20%  Similarity=0.359  Sum_probs=407.7

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q 009033            9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTV   87 (546)
Q Consensus         9 ~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tv   87 (546)
                      .++++++.+||++|+||.+|+..+++|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++ .|+|+
T Consensus       311 ~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tv  390 (1470)
T PLN03140        311 ITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV  390 (1470)
T ss_pred             HHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEE
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999987 58999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhcccccccc
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFE  167 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~~~~~~~~  167 (546)
                      |+++|||+++++++||+|++|++|+++|+|+++++.+||+++|++||++.||+||+++.++.+.... .         +.
T Consensus       391 iis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~-~---------~~  460 (1470)
T PLN03140        391 LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ-Y---------WA  460 (1470)
T ss_pred             EEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh-h---------hh
Confidence            9999999899999999999999999999999999999999999999999999999988766431100 0         00


Q ss_pred             CCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhc---cCccccCCCCCCCHHHHHHHHHHHHHHHhhcchhHH
Q 009033          168 TSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYY  244 (546)
Q Consensus       168 ~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~  244 (546)
                      ....|....+    .+.+.+.|++|.......+.++.....   ........++..+++.|++.+++|.+++++||+..+
T Consensus       461 ~~~~p~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~  536 (1470)
T PLN03140        461 DRNKPYRYIS----VSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVY  536 (1470)
T ss_pred             ccCCccccCC----HHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence            0111111111    235778888887665554443321111   111112345778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCh---hhHHhhhhhHHHHHHHHHHHHhhhhhhHHhhhHHHHHHhhCCCcchHHHHHH
Q 009033          245 WLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIG  321 (546)
Q Consensus       245 ~~r~~~~i~~~l~iG~lf~~l~~~~---~~i~~r~~~lf~~~~~~~f~~~~~~p~~~~er~vf~RE~~~g~Y~~~~y~la  321 (546)
                      ..|+++.+++|+++|++||+++.++   .+.+.+.|++||.+.+.+|.+++.++.++.||+||+|||.+++|++++|++|
T Consensus       537 ~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la  616 (1470)
T PLN03140        537 VFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLP  616 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHH
Confidence            9999999999999999999997543   3456678888888888888888889999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhc
Q 009033          322 NTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSG  401 (546)
Q Consensus       322 ~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~l~~G  401 (546)
                      ++++++|+.++.+++|++|+|||+||++++++|++|+++++++.+++.++++++++++|+..+|+.+++++++++++|+|
T Consensus       617 ~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~G  696 (1470)
T PLN03140        617 TFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGG  696 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCC-CCCCCcCHHHHHhhhcCcccc-cchhHHHHHHHHH
Q 009033          402 YFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS-PDLPKIPGEYVLENVFQIDVR-RSKWIDLSVIFSM  479 (546)
Q Consensus       402 f~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~-~~~~~~~G~~vL~~~~~~~~~-~~~w~~~~iL~~~  479 (546)
                      |++++++||+ ||+| ++|+||++||++|++.|||.+..+.+.. .+.+..+|+++|+. +|++.+ .+.|.|+++|+++
T Consensus       697 f~i~~~~ip~-w~~W-~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~-~g~~~~~~~~w~~~~iL~~~  773 (1470)
T PLN03140        697 FILPKGEIPN-WWEW-AYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWIGVGALLGF  773 (1470)
T ss_pred             ceechHhCch-HHHH-HHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-cCcCccccchhhhHHHHHHH
Confidence            9999999997 5776 9999999999999999999887764321 23356899999976 899643 4689999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 009033          480 IISYRIIFFVMIKISE  495 (546)
Q Consensus       480 ~~~f~~l~~~~l~~~~  495 (546)
                      +++|+++++++|++.+
T Consensus       774 ~v~f~~l~~l~L~~~~  789 (1470)
T PLN03140        774 TILFNVLFTLALTYLN  789 (1470)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999999866

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=5.3e-77  Score=712.69  Aligned_cols=463  Identities=24%  Similarity=0.361  Sum_probs=400.8

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~-il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++++++++++++++.+||++++|+.+|+. .++|||||||||+||++|+.+|+ ||||||||+|||+.++.++++.|+++
T Consensus       870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l  948 (1394)
T TIGR00956       870 SKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL  948 (1394)
T ss_pred             CHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            34567788999999999999999999863 34899999999999999999997 99999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCC-eEEEecCh----hHHHHHHHHcCC-CCCCCCCChhHHHHHhhcChhhH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGG-KTVYFGET----SAAFEFFAQAGF-PCPALRNPSDHFLRCINSDFDKV  154 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G-~~v~~G~~----~~~~~~f~~~g~-~~p~~~~p~d~~l~~~~~~~~~~  154 (546)
                      +++|+|||+++|||+..+++.||++++|++| +++|+|++    +++.+||+..|+ +||+..||+||+++.++.+... 
T Consensus       949 a~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~- 1027 (1394)
T TIGR00956       949 ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA- 1027 (1394)
T ss_pred             HHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc-
Confidence            9899999999999987788999999999987 99999997    568899999996 9999999999999987653110 


Q ss_pred             HHhhhccccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhc-c---Cc--cccCCCCCCCHHHHHHH
Q 009033          155 KATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV-K---GT--VLDAGGSQASFLMQAFT  228 (546)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~---~~--~~~~~~~~~s~~~Q~~~  228 (546)
                                               +..+.+.+.|+.|.......+.++..... .   ..  .....++.+++++|+++
T Consensus      1028 -------------------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 1082 (1394)
T TIGR00956      1028 -------------------------HANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKL 1082 (1394)
T ss_pred             -------------------------chhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHH
Confidence                                     00123556677666555544433322111 0   00  01123578899999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHhhhhhhHHhhhHHH-HHH
Q 009033          229 LTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVF-QRE  307 (546)
Q Consensus       229 L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~~~~p~~~~er~vf-~RE  307 (546)
                      |++|+++++||||.+++.|+++.+++|+++|++|+++++++.++++|.+++|+++.+..++....+|.|+.||.+| +||
T Consensus      1083 l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE 1162 (1394)
T TIGR00956      1083 VLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRE 1162 (1394)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988877777667889999999885 999


Q ss_pred             hhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009033          308 RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIH-------YLFFVLCLYASVAVVESLMMAIASIVP  380 (546)
Q Consensus       308 ~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~-------f~~f~l~l~l~~~~~~sl~~~i~~~~p  380 (546)
                      +.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+||++++..       |++|++++++..++++++|+++++++|
T Consensus      1163 ~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~ 1242 (1394)
T TIGR00956      1163 RPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNP 1242 (1394)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999988765       999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCC--------------
Q 009033          381 NFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSP--------------  446 (546)
Q Consensus       381 ~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~--------------  446 (546)
                      +..+|+.+++.+++++++|+||++++++||+ +|+| ++|+||++|+++|++.|||.|.++.|...              
T Consensus      1243 ~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~w-~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~ 1320 (1394)
T TIGR00956      1243 NADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWIF-MYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCG 1320 (1394)
T ss_pred             cHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHhH-HHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHH
Confidence            9999999999999999999999999999997 6886 99999999999999999999988765421              


Q ss_pred             -----------------C---CC----CcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009033          447 -----------------D---LP----KIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED  496 (546)
Q Consensus       447 -----------------~---~~----~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~  496 (546)
                                       +   .|    +.+|+++|+. ++++.+ ..|+|+++++++++++ +++++++++..|
T Consensus      1321 ~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~-~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956      1321 EYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYS-GRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred             HHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCccc-ccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence                             0   12    4599999997 888754 5899999999999999 777788877644

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1e-73  Score=646.70  Aligned_cols=490  Identities=23%  Similarity=0.416  Sum_probs=424.3

Q ss_pred             HHHHHH-HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            3 WSEKRT-LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         3 ~~~~~~-~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +.++.. .+|.+++.+||++|+||+|||...||+||||||||+||.+++.+|+++++||+|+|||+.++.++++.||+++
T Consensus       228 R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a  307 (1391)
T KOG0065|consen  228 RREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLA  307 (1391)
T ss_pred             HHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHH
Confidence            344333 6789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhcChhhHHHhhhc
Q 009033           82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKG  160 (546)
Q Consensus        82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~~~~~~~~~~~~  160 (546)
                      + .+.|.++++|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.+++|++.+..+.. ++       
T Consensus       308 ~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k-~~-------  379 (1391)
T KOG0065|consen  308 HITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKK-DQ-------  379 (1391)
T ss_pred             hhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCc-cc-------
Confidence            8 68999999999999999999999999999999999999999999999999999999999887766521 11       


Q ss_pred             cccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhcc---CccccCCCCCCCHHHHHHHHHHHHHHHh
Q 009033          161 SMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVK---GTVLDAGGSQASFLMQAFTLTKRSFVNM  237 (546)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~Q~~~L~~R~~~~~  237 (546)
                        ...+...+.+....+.    .++.+.|++++........++...++.   ......+++..+.|.|++.+++|.|..+
T Consensus       380 --~~~~~~~~~~~~~~~~----~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~  453 (1391)
T KOG0065|consen  380 --EQYWNKRSKPYPYTSV----SEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLM  453 (1391)
T ss_pred             --cccccccCCCcccCCH----HHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHH
Confidence              1112222223222222    347788888888877766655432221   1222356778899999999999999999


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhccCC-CChhhHHhhhhhHHHHHHHHHHHHhhhhhhHHhhhHHHHHHhhCCCcchH
Q 009033          238 SRDFGYYWLRLVIYVVVTICIGTIYLNVG-TGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVT  316 (546)
Q Consensus       238 ~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~-~~~~~i~~r~~~lf~~~~~~~f~~~~~~p~~~~er~vf~RE~~~g~Y~~~  316 (546)
                      .||..++..++++.+++|+++|++|++.+ .+..+...|.|++||.+.+.+|++++.++...+.|+||+|+|...+|+++
T Consensus       454 k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~  533 (1391)
T KOG0065|consen  454 KRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPW  533 (1391)
T ss_pred             hCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChH
Confidence            99999999999999999999999999999 66677889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 009033          317 AFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIF  396 (546)
Q Consensus       317 ~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~  396 (546)
                      +|.++.+++++|+.++.+++|.+|+||++||.+++++||.+++.++++..++.++++++++++++...|+.+|++.+.+.
T Consensus       534 A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i  613 (1391)
T KOG0065|consen  534 AEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVL  613 (1391)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCC------------C---------CCCCCcCHHH
Q 009033          397 MLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQ------------S---------PDLPKIPGEY  455 (546)
Q Consensus       397 ~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~------------~---------~~~~~~~G~~  455 (546)
                      .+++||+++.++||+ ||+| ++|+||..||+|+++.|||.|..++|.            .         +|..+..|++
T Consensus       614 ~m~~Gf~Ip~~~m~~-W~~W-i~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~  691 (1391)
T KOG0065|consen  614 FMYGGFVIPKKDMPP-WFRW-IAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRD  691 (1391)
T ss_pred             HHHcceeeeccccch-HHHH-HHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEeccc
Confidence            999999999999997 5666 999999999999999999999988886            1         1224567777


Q ss_pred             HHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhh
Q 009033          456 VLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRR  509 (546)
Q Consensus       456 vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~  509 (546)
                      +++..|+++. ++.|+|+++++|+.++|.++..+++.|.+-.+-...-+..++.
T Consensus       692 ~l~~~~~y~~-~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~  744 (1391)
T KOG0065|consen  692 YLKVQYQYEY-KWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKG  744 (1391)
T ss_pred             cccccccccc-ceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccc
Confidence            7766677654 5699999999999999999999998886544433333344433

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.7e-74  Score=647.25  Aligned_cols=469  Identities=25%  Similarity=0.376  Sum_probs=404.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC-CeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP-RLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P-~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++.+||.+.||++++.++|++++|.+||... +|||.+||||++||.||+.+| .||||||||||||+.++..|++.+|+
T Consensus       897 v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrk  975 (1391)
T KOG0065|consen  897 VSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRK  975 (1391)
T ss_pred             CCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHH
Confidence            3577888999999999999999999999977 999999999999999999999 89999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEecChhH----HHHHHHHcC-CCCCCCCCChhHHHHHhhcChhh
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSA----AFEFFAQAG-FPCPALRNPSDHFLRCINSDFDK  153 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~-~G~~v~~G~~~~----~~~~f~~~g-~~~p~~~~p~d~~l~~~~~~~~~  153 (546)
                      ++..|+||+||+||||.++++.||++++|+ +|++||+||..+    +++||++.| .+||...||||++++++....+.
T Consensus       976 la~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~ 1055 (1391)
T KOG0065|consen  976 LADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA 1055 (1391)
T ss_pred             HHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhccccccc
Confidence            999999999999999999999999999997 789999999755    567999976 89999999999999987653110


Q ss_pred             HHHhhhccccccccCCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHHhhhhccCc----cccCCCCCCCHHHHHHHH
Q 009033          154 VKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKGT----VLDAGGSQASFLMQAFTL  229 (546)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~Q~~~L  229 (546)
                                                +...++.+.|++|+.++...+.++++......    ...+.++.+|++.|++.+
T Consensus      1056 --------------------------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~ 1109 (1391)
T KOG0065|consen 1056 --------------------------SLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLC 1109 (1391)
T ss_pred             --------------------------ccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHH
Confidence                                      01124678999999999988888776532211    122456789999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHhhhh-hhHHhhhHHHHHHh
Q 009033          230 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF-PSFVEDMKVFQRER  308 (546)
Q Consensus       230 ~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~~~~-p~~~~er~vf~RE~  308 (546)
                      ++|++..+||+|.|.++|++..++.||++|+.||++|++.++++|..+++|+.+.+..-...+.. |....||.+++||+
T Consensus      1110 l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~ 1189 (1391)
T KOG0065|consen 1110 LWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRER 1189 (1391)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeec
Confidence            99999999999999999999999999999999999999999999999999988877665544434 55567889999999


Q ss_pred             hCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 009033          309 LNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIIT  388 (546)
Q Consensus       309 ~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~  388 (546)
                      .+|+|++.+|++|.+++|+|+.++.+.+|.+++|+++|+...+.+|++|++..++..+...++|+++.+++||..+|.++
T Consensus      1190 ~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~ 1269 (1391)
T KOG0065|consen 1190 ASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVI 1269 (1391)
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCC------CCcCHHHHHhhhcC
Q 009033          389 GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL------PKIPGEYVLENVFQ  462 (546)
Q Consensus       389 ~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~------~~~~G~~vL~~~~~  462 (546)
                      .+.++.++.+|+|++++++.||+ ||+| |||+||+.|.++|++..++.+.+-.|...+.      +-.+..++++.++|
T Consensus      1270 ~s~~~s~~~~F~G~l~p~~~iP~-fW~w-my~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~ 1347 (1391)
T KOG0065|consen 1270 ASLFFSFWNLFSGFLQPRSLIPK-FWIW-MYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFG 1347 (1391)
T ss_pred             HHHHHHHHHHhcccccccccccc-eeee-eeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhc
Confidence            99999999999999999999998 7986 9999999999999999999988777755431      12356677777788


Q ss_pred             ----cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 009033          463 ----IDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTP  499 (546)
Q Consensus       463 ----~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~~  499 (546)
                          +..+. .-..-.+..++.+++.+++.+.+++..+-+.
T Consensus      1348 ~~~Gy~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1348 EGTGYLHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred             cCcceeccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence                43221 1122233344667777777777777655443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=9.6e-27  Score=220.68  Aligned_cols=116  Identities=30%  Similarity=0.435  Sum_probs=110.3

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++.++++.++|+.+||.+.+|.     ++.+|||||||||+|||+|+.+|+++++|||||.|||....+|++.+++|
T Consensus       108 ~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L  182 (240)
T COG1126         108 LSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL  182 (240)
T ss_pred             CCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence            4788899999999999999999988     77889999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |++|.|.|++||+. ..+.+.+|||+.|++|+++..|++++.
T Consensus       183 A~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~  223 (240)
T COG1126         183 AEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEF  223 (240)
T ss_pred             HHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHH
Confidence            99999999999995 789999999999999999999988864

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.7e-26  Score=229.37  Aligned_cols=117  Identities=32%  Similarity=0.451  Sum_probs=110.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++++++|.++++.+||++.+|.     ++.+|||||||||+|||||+.+|+||++|||||.|||.+...|+++|+++
T Consensus       113 ~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I  187 (339)
T COG1135         113 VPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI  187 (339)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence            4789999999999999999999888     67789999999999999999999999999999999999999999999999


Q ss_pred             Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      .+ .|.||+++||++ +-+.+.||||.+|++|+++..|+..++.
T Consensus       188 n~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF  230 (339)
T COG1135         188 NRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF  230 (339)
T ss_pred             HHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence            86 599999999995 7899999999999999999999988764

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.1e-25  Score=210.73  Aligned_cols=118  Identities=31%  Similarity=0.432  Sum_probs=111.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      |++.+.+++++++.+.|+|.++.|+++|+     +|.|+||||+|||+|+++|++++|||||||||..++..+.+.++++
T Consensus       105 l~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~  179 (245)
T COG4555         105 LSRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL  179 (245)
T ss_pred             hhhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHh
Confidence            45678899999999999999999999874     9999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .++|++||+++|. .+|+.++||++++|++|++|+.|+.++..+
T Consensus       180 k~egr~viFSSH~-m~EvealCDrvivlh~Gevv~~gs~~~l~~  222 (245)
T COG4555         180 KNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEGSIEALDA  222 (245)
T ss_pred             hcCCcEEEEeccc-HHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence            9999999999999 589999999999999999999999987654

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=4e-25  Score=217.98  Aligned_cols=118  Identities=33%  Similarity=0.523  Sum_probs=109.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++.+++++++++.+||++.+++     .+..|||||||||+||.+|+.+|++|+|||||+|||+.++.++++.+++|
T Consensus       110 ~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L  184 (235)
T COG1122         110 LPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL  184 (235)
T ss_pred             CCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            3567889999999999999999887     56789999999999999999999999999999999999999999999999


Q ss_pred             HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .++ |.|+|++||+ ...+..++|++++|++|+++++|++.++.+
T Consensus       185 ~~~~~~tii~~tHd-~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~  228 (235)
T COG1122         185 KEEGGKTIIIVTHD-LELVLEYADRVVVLDDGKILADGDPAEIFN  228 (235)
T ss_pred             HhcCCCeEEEEeCc-HHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence            987 7999999999 589999999999999999999999876543

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.92  E-value=9.5e-25  Score=211.16  Aligned_cols=127  Identities=24%  Similarity=0.443  Sum_probs=116.1

Q ss_pred             CHHHHHHHHHHHHHHcCCcc--cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++++++++++++++.+||+.  .+++     ++++|||||+|||.+||||+.+|+||++|||++.|||.++.++.+.+++
T Consensus       106 ~k~~i~~r~~ELl~lvgL~p~~~~~R-----yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~  180 (309)
T COG1125         106 DKERIKKRADELLDLVGLDPSEYADR-----YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE  180 (309)
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHhhc-----CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence            57788999999999999974  5655     7899999999999999999999999999999999999999999999999


Q ss_pred             HHh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHh
Q 009033           80 LSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCI  147 (546)
Q Consensus        80 l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~  147 (546)
                      +.+ -|+|||++||| ..|++++.|||++|++|+++..|+|++++.             ||++.|+...
T Consensus       181 lq~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~Q~~~P~~il~-------------~Pan~FV~~f  235 (309)
T COG1125         181 LQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEILA-------------NPANDFVEDF  235 (309)
T ss_pred             HHHHhCCEEEEEecC-HHHHHhhhceEEEecCCeEEEeCCHHHHHh-------------CccHHHHHHH
Confidence            987 59999999999 589999999999999999999999998764             7887777654

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=6.1e-25  Score=216.38  Aligned_cols=112  Identities=30%  Similarity=0.529  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .++.|+++|+.+|+.+.+|+.||.     |||||+|||-|||+|+++|++|+|||||+|+|+.++..++++|++++++|+
T Consensus       116 d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~  190 (254)
T COG1121         116 DKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK  190 (254)
T ss_pred             HHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence            378899999999999999998885     999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ||++++||+ ..+.+.||+|++|++ +++++|+++++.+
T Consensus       191 tIl~vtHDL-~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~  227 (254)
T COG1121         191 TVLMVTHDL-GLVMAYFDRVICLNR-HLIASGPPEEVLT  227 (254)
T ss_pred             EEEEEeCCc-HHhHhhCCEEEEEcC-eeEeccChhhccC
Confidence            999999995 789999999999965 5678999987653

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.92  E-value=1.1e-24  Score=222.76  Aligned_cols=118  Identities=39%  Similarity=0.561  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||.+.+++++     ++||+|||||++||++|+++|++|||||||+||||.++.++.+.|++++++
T Consensus       111 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~  185 (293)
T COG1131         111 EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE  185 (293)
T ss_pred             hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            345678999999999998666644     579999999999999999999999999999999999999999999999998


Q ss_pred             C-CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHH
Q 009033           84 G-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA  127 (546)
Q Consensus        84 g-~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~  127 (546)
                      | +||++|||++ +++..+||+|++|++|++++.|+++++...+.
T Consensus       186 g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~  229 (293)
T COG1131         186 GGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFG  229 (293)
T ss_pred             CCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence            7 8999999996 78999999999999999999999988766543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.92  E-value=9.9e-25  Score=215.92  Aligned_cols=113  Identities=38%  Similarity=0.516  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +.++.|++.|+.+|+.+.+++.+.     .|||||||||.||++|+++|++|+||||||.||..++.++++.++++++ +
T Consensus       114 ~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~  188 (258)
T COG1120         114 EDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK  188 (258)
T ss_pred             hHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc
Confidence            344579999999999999999764     6999999999999999999999999999999999999999999999995 6


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |.|||+++||+ ..+.++||++++|++|+++.+|+++++.
T Consensus       189 ~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         189 GLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             CCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhc
Confidence            99999999996 6899999999999999999999998765

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=1.5e-24  Score=208.72  Aligned_cols=118  Identities=37%  Similarity=0.524  Sum_probs=109.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++++..++.+..-|+..||... +|.     ++.+|||||+||+++|||++.+|+|+|+||||+||||.++..+.+++++
T Consensus       116 lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~  190 (263)
T COG1127         116 LPESLIRELVLMKLELVGLRGAAADL-----YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRE  190 (263)
T ss_pred             CCHHHHHHHHHHHHHhcCCChhhhhh-----CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHH
Confidence            4677888899999999999876 555     7789999999999999999999999999999999999999999999999


Q ss_pred             HHh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |.+ -|.|++++|||. .+++..+|++++|.+|++++.|+++++.+
T Consensus       191 L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~el~~  235 (263)
T COG1127         191 LNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEELLA  235 (263)
T ss_pred             HHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence            987 599999999995 78999999999999999999999998754

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=5.7e-24  Score=204.26  Aligned_cols=114  Identities=30%  Similarity=0.469  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +.+.++-+.|+.+|+.+.+.++.+     .|||||+|||+|||+|+++|+|++.|||++.|||.++.+||+.|+++++ +
T Consensus       123 ~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~  197 (258)
T COG3638         123 EDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQED  197 (258)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc
Confidence            445667788999999999998776     5999999999999999999999999999999999999999999999986 7


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |.|||++.||. .-+.++|||++-|++|+++|+||++++.+
T Consensus       198 g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg~~~el~~  237 (258)
T COG3638         198 GITVIVNLHQV-DLAKKYADRIIGLKAGRIVFDGPASELTD  237 (258)
T ss_pred             CCEEEEEechH-HHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence            99999999995 78999999999999999999999988654

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.9e-23  Score=210.11  Aligned_cols=118  Identities=29%  Similarity=0.400  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++|.++++.++|+.+||.+....  -+.++.+|||||||||.||.+|+.+|+|||.||||++||...+.+|+++|+++.+
T Consensus       124 ~~ea~~~a~~~L~~Vgi~~~~~~--~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~  201 (316)
T COG0444         124 KKEAKERAIELLELVGIPDPERR--LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR  201 (316)
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHH--HhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence            45667889999999999764322  2448999999999999999999999999999999999999999999999999997


Q ss_pred             -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       .|.++|++|||. .-+.+++|||++|..|++|+.|+++++.
T Consensus       202 e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g~~~~i~  242 (316)
T COG0444         202 EKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEIF  242 (316)
T ss_pred             hcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence             799999999995 7899999999999999999999999764

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.90  E-value=2.9e-23  Score=216.39  Aligned_cols=115  Identities=30%  Similarity=0.435  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.++++.++++.+||++..|+.     +..|||||||||+|||+|+++|++|+|||||+|||+.++..+++.|+++++
T Consensus       114 ~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~  188 (343)
T TIGR02314       114 KDEIKRKVTELLALVGLGDKHDSY-----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR  188 (343)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            456677899999999999888874     457999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |.|||++||++ +.+.++||++++|++|+++..|+++++.
T Consensus       189 ~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~  229 (343)
T TIGR02314       189 RLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF  229 (343)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            5 99999999995 7888999999999999999999988763

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.90  E-value=3.3e-23  Score=213.34  Aligned_cols=115  Identities=34%  Similarity=0.537  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      .+.+++++++++.++|.+.+++.++     +||||||||++||++|+++|++|+|||||+|||+.++.++.+.|++++++
T Consensus       113 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~  187 (306)
T PRK13537        113 AAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR  187 (306)
T ss_pred             HHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            4455678899999999998888664     69999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |+|||+++|++ +++.++||+|++|++|++++.|+++++.+
T Consensus       188 g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~  227 (306)
T PRK13537        188 GKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE  227 (306)
T ss_pred             CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99999999995 78999999999999999999999988754

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=5e-23  Score=210.33  Aligned_cols=127  Identities=30%  Similarity=0.487  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +++.++++.++++.+||. +..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       117 ~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~  191 (288)
T PRK13643        117 KEKAEKIAAEKLEMVGLADEFWEK-----SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH  191 (288)
T ss_pred             HHHHHHHHHHHHHHcCCChhhccC-----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence            455667889999999996 45665     456799999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH---HHHHHcCCCCCC
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFPCPA  135 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~---~~f~~~g~~~p~  135 (546)
                      ++|.|||+++|++ .++.+++|+|++|++|++++.|++++..   +.+...|+.+|.
T Consensus       192 ~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~  247 (288)
T PRK13643        192 QSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK  247 (288)
T ss_pred             HCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCCh
Confidence            8899999999996 7788999999999999999999998864   344556766554

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=4.6e-23  Score=204.75  Aligned_cols=130  Identities=25%  Similarity=0.381  Sum_probs=118.9

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++++|+++++.+.|+..||++.+++     ++++|||||||||.+||+|+++|+||++|||+|.|||--+.++.+.|.+|
T Consensus       136 v~~~er~~~a~~~l~~VgL~~~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L  210 (386)
T COG4175         136 VPKAEREERALEALELVGLEGYADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL  210 (386)
T ss_pred             CCHHHHHHHHHHHHHHcCchhhhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence            4789999999999999999999998     56789999999999999999999999999999999999999999999999


Q ss_pred             Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHHcCCCCCCCCCChhHHHHHhhc
Q 009033           81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINS  149 (546)
Q Consensus        81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~p~~~~p~d~~l~~~~~  149 (546)
                      .+ .++|||++||| ..|.+++.|||.+|++|+++..|+|++++.             ||++.|+...-.
T Consensus       211 q~~l~KTIvFitHD-LdEAlriG~rIaimkdG~ivQ~Gtp~eIl~-------------~PAndYV~~Fv~  266 (386)
T COG4175         211 QAKLKKTIVFITHD-LDEALRIGDRIAIMKDGEIVQVGTPEEILL-------------NPANDYVRDFVR  266 (386)
T ss_pred             HHHhCCeEEEEecC-HHHHHhccceEEEecCCeEEEeCCHHHHHc-------------CccHHHHHHHHh
Confidence            86 58999999999 589999999999999999999999998764             777777665443

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.7e-23  Score=200.82  Aligned_cols=113  Identities=29%  Similarity=0.455  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            6 KRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      .++++.++++.+||.. ..++     ++.+||||||||++|||||+.+|++|+||||||.||+..+.+|+++|.++.+ .
T Consensus       117 ~~~~i~~~L~~VgL~~~~l~R-----~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~  191 (252)
T COG1124         117 SQQRIAELLDQVGLPPSFLDR-----RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER  191 (252)
T ss_pred             HHHHHHHHHHHcCCCHHHHhc-----CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence            3445899999999974 5555     6788999999999999999999999999999999999999999999999997 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |.|.|+++|| ..-+.++||||++|.+|+++..++++++.+
T Consensus       192 ~lt~l~IsHd-l~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~  231 (252)
T COG1124         192 GLTYLFISHD-LALVEHMCDRIAVMDNGQIVEIGPTEELLS  231 (252)
T ss_pred             CceEEEEeCc-HHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence            8899999999 588999999999999999999999998654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.89  E-value=7.7e-23  Score=210.37  Aligned_cols=115  Identities=30%  Similarity=0.477  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      .+.+++++++++.+||.+..|+.+     +.||||||||++||++|+++|++|+|||||+|||+.++..+.+.|++++++
T Consensus        99 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~  173 (302)
T TIGR01188        99 DEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE  173 (302)
T ss_pred             HHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            344567899999999998888865     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus       174 g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~  213 (302)
T TIGR01188       174 GVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR  213 (302)
T ss_pred             CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence            99999999995 78999999999999999999999988654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.89  E-value=5.7e-23  Score=199.63  Aligned_cols=102  Identities=34%  Similarity=0.557  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHcCCccccc-ccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMGLQDCAD-TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~-~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +++++++++++.+||.+..+ +     ++.+|||||||||+|||||+.+|+|+++||||..||+.++..|+++|++++++
T Consensus       117 ~~~~~~~~l~~~lgl~~~~~~~-----~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~  191 (226)
T COG1136         117 RRKRAAEELLEVLGLEDRLLKK-----KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE  191 (226)
T ss_pred             HHHHHHHHHHHhcCChhhhccC-----CchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh
Confidence            56778899999999997666 4     56789999999999999999999999999999999999999999999999875


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                       |+|||++||+|  ++...+||++.|.+|++
T Consensus       192 ~g~tii~VTHd~--~lA~~~dr~i~l~dG~~  220 (226)
T COG1136         192 RGKTIIMVTHDP--ELAKYADRVIELKDGKI  220 (226)
T ss_pred             cCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence             99999999996  68899999999999983

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.89  E-value=7.5e-23  Score=219.50  Aligned_cols=119  Identities=31%  Similarity=0.436  Sum_probs=110.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.++++.++++.+||.+....   +.++++|||||||||.||++|+.+|++|++||||++||+.++.+|++.|+++.
T Consensus       125 ~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~  201 (539)
T COG1123         125 SRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ  201 (539)
T ss_pred             cHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHH
Confidence            367788999999999999887665   55899999999999999999999999999999999999999999999999998


Q ss_pred             h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      + .|.++|++||++ .-+.+++|||++|.+|+++..|+++++.+
T Consensus       202 ~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~  244 (539)
T COG1123         202 RELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEEILS  244 (539)
T ss_pred             HHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence            5 699999999996 78999999999999999999999998865

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2.3e-22  Score=205.35  Aligned_cols=115  Identities=33%  Similarity=0.503  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHcCCc--ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++.+++++++++.+||.  +..|+     .++.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++
T Consensus       116 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l  190 (287)
T PRK13637        116 EEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL  190 (287)
T ss_pred             HHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            445667889999999997  56666     44679999999999999999999999999999999999999999999999


Q ss_pred             HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +++ |+|||++||++ .++.+++|++++|++|++++.|+++++.
T Consensus       191 ~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13637        191 HKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVF  233 (287)
T ss_pred             HHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            875 99999999995 7888999999999999999999998864

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.1e-22  Score=213.23  Aligned_cols=116  Identities=27%  Similarity=0.424  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++..|+.+     +.|||||||||+|||+|+.+|++|+|||||++||+.++.++.+.|+++.
T Consensus       107 ~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~  181 (356)
T PRK11650        107 PKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH  181 (356)
T ss_pred             CHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            34566788999999999998888754     5799999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ |.|+|++||++ .++.+++|++++|++|+++..|+++++.
T Consensus       182 ~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~  223 (356)
T PRK11650        182 RRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY  223 (356)
T ss_pred             HhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence            75 99999999995 7899999999999999999999998764

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.89  E-value=1.2e-22  Score=201.36  Aligned_cols=113  Identities=33%  Similarity=0.505  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      ++.+++++++++.+||.+..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ 
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  185 (235)
T cd03261         111 EEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE  185 (235)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh
Confidence            344567889999999988777755     46999999999999999999999999999999999999999999999987 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      .|+|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus       186 ~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~  224 (235)
T cd03261         186 LGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL  224 (235)
T ss_pred             cCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence            489999999996 678899999999999999999988764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.89  E-value=1.4e-22  Score=211.34  Aligned_cols=115  Identities=32%  Similarity=0.526  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      .+.+++++++++.+||.+..++.++     +||||||||++||++|+++|++|+|||||+|||+.++.++.+.|++++++
T Consensus       147 ~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~  221 (340)
T PRK13536        147 REIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR  221 (340)
T ss_pred             HHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence            3445677889999999998888765     69999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |+|||+++|++ +++.++||+|++|++|++++.|+++++.+
T Consensus       222 g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~  261 (340)
T PRK13536        222 GKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID  261 (340)
T ss_pred             CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999995 78999999999999999999999998754

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.89  E-value=1.3e-22  Score=213.14  Aligned_cols=116  Identities=27%  Similarity=0.456  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++..|+.+     ++|||||||||+|||+|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus       110 ~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~  184 (362)
T TIGR03258       110 PKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH  184 (362)
T ss_pred             CHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence            34566778999999999999888854     5799999999999999999999999999999999999999999999998


Q ss_pred             hC--CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~--g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++  |.|+|++||++ .++.+++|+|++|++|+++..|+++++.
T Consensus       185 ~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~  227 (362)
T TIGR03258       185 EELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY  227 (362)
T ss_pred             HhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            76  89999999995 7899999999999999999999998764

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2.7e-22  Score=205.21  Aligned_cols=115  Identities=26%  Similarity=0.384  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +++.+++++++++.+||. +..++.     ++.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++
T Consensus       118 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~  192 (290)
T PRK13634        118 EEDAKQKAREMIELVGLPEELLARS-----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH  192 (290)
T ss_pred             HHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence            344557889999999996 566764     45799999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ |.|||+++|++ .++.+++|||++|++|++++.|+++++.
T Consensus       193 ~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~  234 (290)
T PRK13634        193 KEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTPREIF  234 (290)
T ss_pred             HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            64 99999999995 7899999999999999999999988764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2.6e-22  Score=206.52  Aligned_cols=115  Identities=29%  Similarity=0.445  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +++.+++++++++.+||. +..++.     +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus       138 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~  212 (305)
T PRK13651        138 KEEAKKRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN  212 (305)
T ss_pred             HHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence            445667899999999996 667764     45799999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++|.|||+++|++ .++.+.+|+|++|++|++++.|+++++.
T Consensus       213 ~~g~tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~  253 (305)
T PRK13651        213 KQGKTIILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDIL  253 (305)
T ss_pred             HCCCEEEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            8899999999995 7789999999999999999999998864

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.88  E-value=1.9e-22  Score=207.53  Aligned_cols=114  Identities=32%  Similarity=0.516  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.++|.+..++.++     +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       111 ~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g  185 (303)
T TIGR01288       111 EIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG  185 (303)
T ss_pred             HHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence            345667889999999988888654     699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +|||+++|++ +++.++||++++|++|++++.|+++++.+
T Consensus       186 ~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  224 (303)
T TIGR01288       186 KTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID  224 (303)
T ss_pred             CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999996 78999999999999999999999987643

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3.8e-22  Score=202.43  Aligned_cols=113  Identities=28%  Similarity=0.377  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||++..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|++++++
T Consensus       113 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  187 (274)
T PRK13647        113 DEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ  187 (274)
T ss_pred             HHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC
Confidence            344567889999999988887754     579999999999999999999999999999999999999999999999878


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |+|||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus       188 g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        188 GKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            99999999995 678899999999999999999998654

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.88  E-value=1.4e-22  Score=187.20  Aligned_cols=114  Identities=28%  Similarity=0.426  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      ++.+++++.++..+||.++.+++     +.+|||||||||++||.|+.+-+||+||||+|.|||.-+.+...++.+++. 
T Consensus       104 a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E  178 (231)
T COG3840         104 AEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE  178 (231)
T ss_pred             HHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence            35678899999999999999884     567999999999999999999999999999999999999999999999996 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++.|++++||+| +++.++.|+++++++|+|.++|+.++..
T Consensus       179 ~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~  218 (231)
T COG3840         179 RKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL  218 (231)
T ss_pred             hCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence            689999999998 7899999999999999999999988653

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.88  E-value=2e-20  Score=227.37  Aligned_cols=116  Identities=28%  Similarity=0.393  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||++.+|+.+     ++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +
T Consensus      1036 ~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~ 1109 (2272)
T TIGR01257      1036 EEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S 1109 (2272)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C
Confidence            445677899999999998888865     4699999999999999999999999999999999999999999999995 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF  126 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f  126 (546)
                      |+|||++||++ .++..++|||++|++|+++..|+++.+++.|
T Consensus      1110 g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257      1110 GRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred             CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence            99999999995 7899999999999999999999999887655

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.88  E-value=2e-22  Score=211.19  Aligned_cols=117  Identities=27%  Similarity=0.416  Sum_probs=107.5

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++..|+.     +++|||||||||+|||+|+.+|++|+|||||+|||..++.++.+.|+++.
T Consensus       107 ~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~  181 (353)
T TIGR03265       107 GRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ  181 (353)
T ss_pred             CHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            3556778899999999999988874     46799999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ++ |.|+|++||++ .++.+++|++++|++|+++..|+++++.+
T Consensus       182 ~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~  224 (353)
T TIGR03265       182 RRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR  224 (353)
T ss_pred             HhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            74 89999999996 78999999999999999999999987643

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2e-22  Score=210.84  Aligned_cols=116  Identities=27%  Similarity=0.494  Sum_probs=106.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||.+..|+.     ++.|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus       109 ~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  183 (351)
T PRK11432        109 PKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ  183 (351)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            3456778999999999999888774     46799999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ |+|+|++||++ .++.+++|+|++|++|+++..|+++++.
T Consensus       184 ~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~  225 (351)
T PRK11432        184 QQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY  225 (351)
T ss_pred             HhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            74 89999999995 7899999999999999999999998764

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.88  E-value=2.4e-22  Score=210.52  Aligned_cols=115  Identities=26%  Similarity=0.388  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.+++++++++.++|++..|+.     +..|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus       110 ~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~  184 (353)
T PRK10851        110 AAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE  184 (353)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            345567899999999999888874     467999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |.|+|++||++ .++.+++|+|++|++|+++..|+++++.
T Consensus       185 ~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~  225 (353)
T PRK10851        185 ELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW  225 (353)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            5 89999999995 7899999999999999999999998764

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.88  E-value=2.5e-22  Score=198.99  Aligned_cols=112  Identities=32%  Similarity=0.474  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||++..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  193 (236)
T cd03219         119 EARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG  193 (236)
T ss_pred             HHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC
Confidence            44567889999999988777754     5699999999999999999999999999999999999999999999998789


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      +|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus       194 ~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  230 (236)
T cd03219         194 ITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTPDEV  230 (236)
T ss_pred             CEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence            9999999996 688899999999999999999988764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=5.5e-22  Score=205.35  Aligned_cols=126  Identities=29%  Similarity=0.463  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      .++..++++++++.+||. +..++     .+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus       149 ~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~  223 (320)
T PRK13631        149 KSEAKKLAKFYLNKMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK  223 (320)
T ss_pred             HHHHHHHHHHHHHHcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence            344556788999999996 56665     345799999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH---HHHHHcCCCCC
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF---EFFAQAGFPCP  134 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~---~~f~~~g~~~p  134 (546)
                      ++|+|||+++|++ +++.+.+|++++|++|+++..|++++..   +.+...|...|
T Consensus       224 ~~g~TiiivtHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p  278 (320)
T PRK13631        224 ANNKTVFVITHTM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP  278 (320)
T ss_pred             HCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence            8899999999995 6788999999999999999999998764   23444555543

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1.6e-22  Score=200.72  Aligned_cols=117  Identities=31%  Similarity=0.457  Sum_probs=110.0

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++.+++.+|+++|+.+.|++.++.     ++.+|||||||||++||+|+.+|++|+||||+++||..-+.++.+.|+++.
T Consensus       110 ~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~  184 (345)
T COG1118         110 SEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH  184 (345)
T ss_pred             ChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHH
Confidence            456788999999999999999987     778999999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ++ |.|++++|||+ .|+++++|||++|++|+|...|+++++.+
T Consensus       185 ~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~~  227 (345)
T COG1118         185 DRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYD  227 (345)
T ss_pred             HhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence            75 99999999995 89999999999999999999999998743

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.88  E-value=2.5e-22  Score=186.84  Aligned_cols=111  Identities=31%  Similarity=0.415  Sum_probs=103.4

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++|.++|+.+||.+.++.     .+.+|||||||||+||||++.+|++|+.||||.+|||..+.++++++.++.
T Consensus       110 ~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein  184 (223)
T COG2884         110 PPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN  184 (223)
T ss_pred             CHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence            567889999999999999998877     567899999999999999999999999999999999999999999999999


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE  118 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~  118 (546)
                      +.|+||++.||+ ..-+-.+-.|++.|++|+++....
T Consensus       185 r~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         185 RLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             hcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence            999999999999 577888889999999999987653

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.88  E-value=3.4e-22  Score=207.76  Aligned_cols=116  Identities=27%  Similarity=0.446  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++++.+++++++++.+||. +..++     ++..|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++
T Consensus       133 ~~~~~~~~~~~~l~~vgl~~~~~~~-----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l  207 (331)
T PRK15079        133 SRQEVKDRVKAMMLKVGLLPNLINR-----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL  207 (331)
T ss_pred             CHHHHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            3455677888999999994 45555     55689999999999999999999999999999999999999999999999


Q ss_pred             HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      .++ |.|+|++||++ ..+.+++|+|++|++|+++..|+++++.
T Consensus       208 ~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive~g~~~~i~  250 (331)
T PRK15079        208 QREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVELGTYDEVY  250 (331)
T ss_pred             HHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            874 99999999995 7888999999999999999999988764

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=6.9e-22  Score=201.47  Aligned_cols=125  Identities=26%  Similarity=0.445  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.+++++++++.+||.+..|+.+     +.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus       115 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~  189 (283)
T PRK13636        115 EDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK  189 (283)
T ss_pred             HHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence            3445577899999999998887754     56999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH---HHHHcCCCC
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE---FFAQAGFPC  133 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~---~f~~~g~~~  133 (546)
                      + |+|||+++|++ +++.+++|++++|++|++++.|++++..+   .....+.++
T Consensus       190 ~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~  243 (283)
T PRK13636        190 ELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRL  243 (283)
T ss_pred             hCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCC
Confidence            5 89999999995 67888999999999999999999987653   233445443

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.3e-22  Score=195.96  Aligned_cols=104  Identities=33%  Similarity=0.419  Sum_probs=97.5

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +++++++++++.|+.+||.+.+|.     ++++|||||||||+|||+|+.+|+||+||||++.||..++.++.+.|.++.
T Consensus       103 ~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw  177 (248)
T COG1116         103 SKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW  177 (248)
T ss_pred             chHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH
Confidence            467788899999999999999988     788999999999999999999999999999999999999999999999987


Q ss_pred             h-CCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033           82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  111 (546)
                      + .++||+++||+. +|+..++|||++|+++
T Consensus       178 ~~~~~TvllVTHdi-~EAv~LsdRivvl~~~  207 (248)
T COG1116         178 EETRKTVLLVTHDV-DEAVYLADRVVVLSNR  207 (248)
T ss_pred             HhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence            6 689999999995 8999999999999984

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.88  E-value=4.2e-22  Score=197.88  Aligned_cols=111  Identities=32%  Similarity=0.490  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g   84 (546)
                      ..++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|
T Consensus       121 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  195 (241)
T cd03256         121 EKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG  195 (241)
T ss_pred             HHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence            3467788999999987777744     57999999999999999999999999999999999999999999999986 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      +|||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus       196 ~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (241)
T cd03256         196 ITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPPAEL  232 (241)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCHHHh
Confidence            9999999996 678889999999999999999998764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4.4e-22  Score=208.14  Aligned_cols=115  Identities=31%  Similarity=0.465  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.+++++++++.+||++..++.+     +.||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+++++
T Consensus       114 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~  188 (343)
T PRK11153        114 KAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR  188 (343)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            3445677899999999998887754     56999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |+|||+++|++ +++.+++|++++|++|++++.|+++++.
T Consensus       189 ~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~  229 (343)
T PRK11153        189 ELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF  229 (343)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            4 89999999995 7888999999999999999999988764

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.88  E-value=4.2e-22  Score=196.91  Aligned_cols=112  Identities=29%  Similarity=0.487  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..++++++++.+||++..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       109 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~  183 (232)
T cd03218         109 EREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG  183 (232)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence            44567889999999988877754     5699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      +|||+++|++ .++.+++|++++|++|+++..|+.++.
T Consensus       184 ~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  220 (232)
T cd03218         184 IGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI  220 (232)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence            9999999996 689999999999999999999988764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4.9e-22  Score=206.35  Aligned_cols=115  Identities=26%  Similarity=0.355  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +++.++++.++++.+||.+ ..++     +++.||||||||++||++|+.+|++|++||||+|||..++.++++.|+++.
T Consensus       127 ~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~  201 (327)
T PRK11308        127 AAERREKALAMMAKVGLRPEHYDR-----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ  201 (327)
T ss_pred             HHHHHHHHHHHHHHCCCChHHhcC-----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence            4456678899999999963 5555     556899999999999999999999999999999999999999999999998


Q ss_pred             h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + .|.|+|++||+. ..+.+++|+|++|++|+++..|+++++.
T Consensus       202 ~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ive~g~~~~~~  243 (327)
T PRK11308        202 QELGLSYVFISHDL-SVVEHIADEVMVMYLGRCVEKGTKEQIF  243 (327)
T ss_pred             HHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            7 499999999995 7888899999999999999999998764

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.88  E-value=3.5e-22  Score=194.95  Aligned_cols=107  Identities=33%  Similarity=0.477  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus       106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~  180 (213)
T cd03259         106 EIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL  180 (213)
T ss_pred             HHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence            44567889999999988877755     46999999999999999999999999999999999999999999999987 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      |+|||+++|++ .++.+++|++++|++|+++..|
T Consensus       181 ~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         181 GITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             CCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence            89999999996 6788999999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.88  E-value=4.1e-22  Score=195.52  Aligned_cols=111  Identities=33%  Similarity=0.556  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      +.+++++++++.+||++..++.+     ..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       107 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  181 (220)
T cd03265         107 ERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF  181 (220)
T ss_pred             HHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc
Confidence            34567889999999988877755     469999999999999999999999999999999999999999999999876 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~  121 (546)
                      |+|||+++|++ +++.+++|++++|++|+++..|++++
T Consensus       182 ~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (220)
T cd03265         182 GMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE  218 (220)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence            89999999996 68899999999999999999998765

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=5e-22  Score=206.24  Aligned_cols=118  Identities=26%  Similarity=0.367  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.+++++++++.+||.+..+.  -+.++++|||||||||+||++|+.+|++|++||||+|||+.++.++++.|+++++
T Consensus       124 ~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~  201 (326)
T PRK11022        124 KKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ  201 (326)
T ss_pred             HHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence            34556788999999999753211  1225678999999999999999999999999999999999999999999999987


Q ss_pred             -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       .|.|+|++||+. ..+.+++|+|++|++|+++..|+++++.
T Consensus       202 ~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~~~~~~  242 (326)
T PRK11022        202 KENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGKAHDIF  242 (326)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence             599999999995 6788999999999999999999998764

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=8e-22  Score=199.71  Aligned_cols=113  Identities=30%  Similarity=0.501  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       112 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g  186 (271)
T PRK13638        112 EITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG  186 (271)
T ss_pred             HHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC
Confidence            44566788999999988877754     5699999999999999999999999999999999999999999999998779


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      .|||+++|++ .++.+++|++++|++|+++..|++++..
T Consensus       187 ~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  224 (271)
T PRK13638        187 NHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF  224 (271)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999996 6788999999999999999999988754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.88  E-value=4.8e-22  Score=208.44  Aligned_cols=115  Identities=23%  Similarity=0.354  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.++++.++++.+||++..++..     ..|||||||||+|||+|+.+|+||+|||||+|||+.++.++.+.|+++++
T Consensus       103 ~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~  177 (363)
T TIGR01186       103 EQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA  177 (363)
T ss_pred             HHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            4566788999999999988887754     56999999999999999999999999999999999999999999999986


Q ss_pred             -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       .|+|||++||++ .++.+++|+|++|++|+++..|+++++.
T Consensus       178 ~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~  218 (363)
T TIGR01186       178 TLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL  218 (363)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence             489999999995 7899999999999999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=8.5e-22  Score=200.40  Aligned_cols=114  Identities=31%  Similarity=0.473  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.+++++++++.+||++..|+.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus       114 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~  188 (279)
T PRK13650        114 HEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD  188 (279)
T ss_pred             HHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence            4455678899999999998887754     56999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |+|||+++|++ .++ ..+|++++|++|+++..|++++..
T Consensus       189 ~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13650        189 DYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF  228 (279)
T ss_pred             hcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence            5 99999999996 566 589999999999999999998764

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.88  E-value=5.6e-22  Score=206.16  Aligned_cols=118  Identities=27%  Similarity=0.438  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++..+++.++++.+||.+..+. + +.++++|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++++
T Consensus       132 ~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~  209 (330)
T PRK09473        132 KAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR  209 (330)
T ss_pred             HHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            34556788899999999754322 2 246788999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |.|+|++|||+ ..+.+++|++++|++|+++..|+++++.
T Consensus       210 ~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~~~~i~  250 (330)
T PRK09473        210 EFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGNARDVF  250 (330)
T ss_pred             HcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            4 99999999995 6788899999999999999999998764

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.88  E-value=4.2e-22  Score=211.42  Aligned_cols=113  Identities=33%  Similarity=0.489  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||.+..++.+     +.||||||||+.||++|+++|++|+|||||+|||+.++.++++.|++++++|
T Consensus       115 ~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g  189 (402)
T PRK09536        115 TDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG  189 (402)
T ss_pred             HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence            34577899999999998888855     5699999999999999999999999999999999999999999999999889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +|||+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus       190 ~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~  227 (402)
T PRK09536        190 KTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL  227 (402)
T ss_pred             CEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            9999999995 7899999999999999999999998753

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.88  E-value=4.9e-22  Score=209.54  Aligned_cols=115  Identities=26%  Similarity=0.410  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +.+.+++++++++.+||++..|+.     +.+|||||||||+|||+|+.+|++|+|||||+|||...+.++.+.|+++.+
T Consensus       118 ~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~  192 (375)
T PRK09452        118 AAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR  192 (375)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence            445567889999999999988885     457999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |.|+|++||++ .++..++|+|++|++|+++..|+++++.
T Consensus       193 ~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~  233 (375)
T PRK09452        193 KLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY  233 (375)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            4 99999999996 7899999999999999999999998764

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.88  E-value=5e-22  Score=197.41  Aligned_cols=111  Identities=28%  Similarity=0.409  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g   84 (546)
                      .+++++++++.+||++..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus       113 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~  187 (239)
T cd03296         113 IRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH  187 (239)
T ss_pred             HHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence            3466788999999988777754     469999999999999999999999999999999999999999999999874 8


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      +|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       188 ~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (239)
T cd03296         188 VTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV  224 (239)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence            9999999996 678899999999999999999988764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=7.3e-22  Score=201.70  Aligned_cols=114  Identities=30%  Similarity=0.428  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            4 SEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++.+++++++++.+||+ +..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       119 ~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~  193 (287)
T PRK13641        119 DEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK  193 (287)
T ss_pred             HHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence            44566789999999997 5777754     56999999999999999999999999999999999999999999999987


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +|.|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       194 ~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13641        194 AGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASPKEIF  233 (287)
T ss_pred             CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            899999999995 7889999999999999999999988754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=8.3e-22  Score=201.17  Aligned_cols=115  Identities=27%  Similarity=0.467  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +++..++++++++.+||+ +..++.     ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       118 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~  192 (286)
T PRK13646        118 LDEVKNYAHRLLMDLGFSRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ  192 (286)
T ss_pred             HHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence            445567889999999996 667764     45799999999999999999999999999999999999999999999998


Q ss_pred             h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + .|+|||+++|++ .++.+++|++++|++|++++.|+++++.
T Consensus       193 ~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~  234 (286)
T PRK13646        193 TDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTSPKELF  234 (286)
T ss_pred             HhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            6 589999999995 6788999999999999999999988754

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.87  E-value=6.9e-22  Score=196.48  Aligned_cols=113  Identities=26%  Similarity=0.435  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      .+.+++++++++.+||++..|+.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       111 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~  185 (240)
T PRK09493        111 EEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE  185 (240)
T ss_pred             HHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence            344567889999999988777744     579999999999999999999999999999999999999999999999878


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |+|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus       186 ~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  223 (240)
T PRK09493        186 GMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL  223 (240)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence            99999999996 678899999999999999999988764

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.87  E-value=5.6e-22  Score=197.35  Aligned_cols=112  Identities=31%  Similarity=0.452  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus       121 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  195 (243)
T TIGR02315       121 EDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED  195 (243)
T ss_pred             HHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence            34567888999999988777744     56999999999999999999999999999999999999999999999976 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |+|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       196 ~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       196 GITVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             CCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            89999999996 678899999999999999999988764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.87  E-value=8.6e-22  Score=196.92  Aligned_cols=112  Identities=31%  Similarity=0.465  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||++..|+.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       120 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~  194 (250)
T PRK11264        120 EATARARELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK  194 (250)
T ss_pred             HHHHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            34567888999999988777744     5799999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      .|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus       195 ~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  231 (250)
T PRK11264        195 RTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKAL  231 (250)
T ss_pred             CEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999995 678899999999999999999988764

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=7.9e-22  Score=200.42  Aligned_cols=114  Identities=37%  Similarity=0.535  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~  186 (277)
T PRK13652        112 ETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET  186 (277)
T ss_pred             HHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            344567889999999998888754     579999999999999999999999999999999999999999999999875


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       |+|||+++|++ +++.+.+|++++|++|++++.|++++..
T Consensus       187 ~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~  226 (277)
T PRK13652        187 YGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF  226 (277)
T ss_pred             cCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence             89999999996 6888999999999999999999998764

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.87  E-value=4.8e-22  Score=196.60  Aligned_cols=110  Identities=33%  Similarity=0.505  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      +.+++++++++.+||++..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ 
T Consensus        90 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~  164 (230)
T TIGR01184        90 ERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH  164 (230)
T ss_pred             HHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence            34566889999999988777755     469999999999999999999999999999999999999999999999874 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS  120 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~  120 (546)
                      |+|||+++|++ .++.+++|++++|++|+++..|+..
T Consensus       165 ~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~  200 (230)
T TIGR01184       165 RVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL  200 (230)
T ss_pred             CCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence            89999999996 6889999999999999999888654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=8.3e-22  Score=205.05  Aligned_cols=116  Identities=22%  Similarity=0.321  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +.++++.++++.+||.+..+.  -+.++.+|||||||||+||++|+.+|+||+|||||+|||+.++.++++.|+++.+ .
T Consensus       131 ~~~~~~~~~L~~~gL~~~~~~--~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~  208 (330)
T PRK15093        131 WRKRRAIELLHRVGIKDHKDA--MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN  208 (330)
T ss_pred             HHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence            345678899999999753221  1235678999999999999999999999999999999999999999999999987 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |.|||++||++ ..+.+++|+|++|++|++++.|+++++.
T Consensus       209 g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~  247 (330)
T PRK15093        209 NTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV  247 (330)
T ss_pred             CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999995 7888999999999999999999988754

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.87  E-value=7.8e-22  Score=202.80  Aligned_cols=114  Identities=29%  Similarity=0.420  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||++..|+.+     +.||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+++++ 
T Consensus       108 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-  181 (301)
T TIGR03522       108 QLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-  181 (301)
T ss_pred             HHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-
Confidence            445677899999999999888865     46999999999999999999999999999999999999999999999975 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ++|||+++|++ +++.++||++++|++|++++.|+.++...
T Consensus       182 ~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (301)
T TIGR03522       182 DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA  221 (301)
T ss_pred             CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence            79999999995 78999999999999999999999998654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.87  E-value=9.7e-22  Score=198.93  Aligned_cols=113  Identities=24%  Similarity=0.365  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus       136 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~  210 (269)
T cd03294         136 EREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL  210 (269)
T ss_pred             HHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence            34567889999999988888755     46999999999999999999999999999999999999999999999986 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       211 g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~  249 (269)
T cd03294         211 QKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL  249 (269)
T ss_pred             CCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence            89999999995 6788999999999999999999887653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.87  E-value=9.9e-22  Score=204.08  Aligned_cols=114  Identities=26%  Similarity=0.466  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||++..|+.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus        75 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~  149 (325)
T TIGR01187        75 AEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ  149 (325)
T ss_pred             HHHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence            345667899999999998887754     579999999999999999999999999999999999999999999999864


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       |+|+|++||++ .++.+++|++++|++|+++..|+++++.
T Consensus       150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~  189 (325)
T TIGR01187       150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY  189 (325)
T ss_pred             cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence             89999999995 7899999999999999999999998764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=8.1e-22  Score=208.12  Aligned_cols=115  Identities=27%  Similarity=0.399  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +.+.+++++++++.+||.+..++.     +++|||||||||+|||+|+.+|++|+|||||+|||...+.++.+.|+++.+
T Consensus       123 ~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~  197 (377)
T PRK11607        123 KAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE  197 (377)
T ss_pred             HHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            456677899999999999888774     457999999999999999999999999999999999999999999999876


Q ss_pred             -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       .|.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus       198 ~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~  238 (377)
T PRK11607        198 RVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY  238 (377)
T ss_pred             hcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence             589999999995 7899999999999999999999998764

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.87  E-value=8.6e-22  Score=207.76  Aligned_cols=115  Identities=28%  Similarity=0.451  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.+++++++++.+||++..++.+     .+|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus       107 ~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~  181 (369)
T PRK11000        107 KEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK  181 (369)
T ss_pred             HHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            3455678899999999998888754     56999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |.|+|++||++ .++.+++|++++|++|+++..|+++++.
T Consensus       182 ~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~  222 (369)
T PRK11000        182 RLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY  222 (369)
T ss_pred             HhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            4 89999999995 7899999999999999999999998764

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=7e-22  Score=182.04  Aligned_cols=117  Identities=27%  Similarity=0.423  Sum_probs=109.5

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++.+..++++..|.+.||.+.+|.     ++..|||||+||++|||+|+.+|+++++|||||.|||.-.-++++.+++|
T Consensus       124 ~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L  198 (256)
T COG4598         124 VSKAEAIERAEKYLAKVGIAEKADA-----YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL  198 (256)
T ss_pred             CCHHHHHHHHHHHHHHhCchhhhhc-----CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH
Confidence            4678888999999999999998886     66779999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +++|+|.+++||.. ....+...+|+.|.+|.+-..|+|+++.
T Consensus       199 AeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~iEE~G~P~qvf  240 (256)
T COG4598         199 AEEGRTMVVVTHEM-GFARDVSSHVIFLHQGKIEEEGPPEQVF  240 (256)
T ss_pred             HHhCCeEEEEeeeh-hHHHhhhhheEEeecceecccCChHHHh
Confidence            99999999999995 7888999999999999999999999763

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.87  E-value=9.2e-22  Score=194.65  Aligned_cols=112  Identities=30%  Similarity=0.427  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      +..+.++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~  190 (233)
T cd03258         116 EIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL  190 (233)
T ss_pred             HHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc
Confidence            34567889999999988877754     569999999999999999999999999999999999999999999999875 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |+|||+++|++ .++.+++|++++|++|+++..|+.++.
T Consensus       191 ~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (233)
T cd03258         191 GLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV  228 (233)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            89999999996 678899999999999999999987764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.87  E-value=8.1e-22  Score=192.30  Aligned_cols=108  Identities=26%  Similarity=0.435  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      ++.+++++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ 
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  179 (213)
T cd03301         105 DEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR  179 (213)
T ss_pred             HHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence            344567889999999988887755     56999999999999999999999999999999999999999999999987 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      .|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus       180 ~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         180 LGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             cCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence            489999999996 6888999999999999999876

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.87  E-value=9.6e-22  Score=192.90  Aligned_cols=110  Identities=33%  Similarity=0.432  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +..++++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .
T Consensus       107 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~  181 (220)
T cd03293         107 EARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET  181 (220)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            34567889999999988777754     56999999999999999999999999999999999999999999999975 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecChh
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS  120 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~--~G~~v~~G~~~  120 (546)
                      |+|||+++|++ .++.+++|++++|+  +|+++..++.+
T Consensus       182 ~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         182 GKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             CCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence            89999999996 67889999999999  79999888754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.87  E-value=7.8e-22  Score=192.93  Aligned_cols=103  Identities=31%  Similarity=0.445  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       114 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  188 (216)
T TIGR00960       114 DANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRG  188 (216)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC
Confidence            45567889999999988877754     5699999999999999999999999999999999999999999999998789


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      .|||+++|++ +++.+++|++++|++|++
T Consensus       189 ~tii~vsH~~-~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       189 TTVLVATHDI-NLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence            9999999996 678889999999999974

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.3e-21  Score=196.80  Aligned_cols=114  Identities=32%  Similarity=0.521  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++..+++.++++.+||++..++.+     +.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       112 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~  186 (275)
T PRK13639        112 EEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE  186 (275)
T ss_pred             HHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence            345567889999999998888755     469999999999999999999999999999999999999999999999877


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |.|||+++|++ .++.+++|++++|++|+++..|++++..
T Consensus       187 ~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (275)
T PRK13639        187 GITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF  225 (275)
T ss_pred             CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999995 6788899999999999999999998864

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.87  E-value=8.7e-22  Score=192.77  Aligned_cols=108  Identities=34%  Similarity=0.520  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~  185 (218)
T cd03266         111 DELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL  185 (218)
T ss_pred             HHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC
Confidence            345677899999999998888755     469999999999999999999999999999999999999999999999878


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      |+|||+++|++ .++.+++|++++|++|+++..|
T Consensus       186 ~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         186 GKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             CCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence            99999999996 6888999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=8.2e-22  Score=190.72  Aligned_cols=115  Identities=30%  Similarity=0.448  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      ++.++++.++|+.+||.+.+|+..|+     ||+|||||+.||++|+++|++|+||||.+||.+..+.++.+.|+++.+ 
T Consensus       124 ~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~  198 (250)
T COG0411         124 REARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR  198 (250)
T ss_pred             HHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc
Confidence            45678889999999999999998875     999999999999999999999999999999999999999999999998 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .|.||+++.|+. .-++.+||||++|+.|+++..|+|+++.+
T Consensus       199 ~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~  239 (250)
T COG0411         199 GGVTILLIEHDM-KLVMGLADRIVVLNYGEVIAEGTPEEVRN  239 (250)
T ss_pred             CCcEEEEEEecc-HHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence            579999999995 78999999999999999999999998754

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.87  E-value=9.5e-22  Score=193.79  Aligned_cols=111  Identities=28%  Similarity=0.432  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++++++++.+||.+..++...   +.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +
T Consensus       116 ~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~  191 (227)
T cd03260         116 LDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-Y  191 (227)
T ss_pred             HHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-c
Confidence            45678899999999877666430   3579999999999999999999999999999999999999999999999887 9


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~  121 (546)
                      |||+++|++ .++.+++|++++|++|++++.|++++
T Consensus       192 tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~  226 (227)
T cd03260         192 TIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTEQ  226 (227)
T ss_pred             EEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence            999999996 67889999999999999999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.87  E-value=1.1e-21  Score=200.11  Aligned_cols=118  Identities=32%  Similarity=0.483  Sum_probs=108.9

Q ss_pred             CCHHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++++|+.++|.+++++.||+. ..+     ++++++|||||||++|||+++.+|++++||||||.||-.-+.+|+++|++
T Consensus       397 ls~~eR~~rv~~aL~EVGLDp~~r~-----RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~  471 (534)
T COG4172         397 LSAAERDQRVIEALEEVGLDPATRN-----RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD  471 (534)
T ss_pred             CCHHHHHHHHHHHHHHcCCChhHhh-----cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHH
Confidence            367899999999999999974 344     38899999999999999999999999999999999999999999999999


Q ss_pred             HHh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |.+ .|.+-++++|| ..-+-++||+|++|++|++|..|+++++.+
T Consensus       472 LQ~k~~LsYLFISHD-L~VvrAl~~~viVm~~GkiVE~G~~~~if~  516 (534)
T COG4172         472 LQQKHGLSYLFISHD-LAVVRALCHRVIVMRDGKIVEQGPTEAVFA  516 (534)
T ss_pred             HHHHhCCeEEEEecc-HHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence            986 69999999999 588999999999999999999999997654

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.87  E-value=9.5e-22  Score=184.26  Aligned_cols=115  Identities=29%  Similarity=0.520  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++++.+++++|+++++.+++|++-     ..||||||||+.|||+|+.+|+.++||||++|.||.+..++.++++.|+..
T Consensus       114 ~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r  188 (243)
T COG1137         114 AERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR  188 (243)
T ss_pred             HHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC
Confidence            356677889999999999999965     469999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |..|++|=|.. -|...++||..++++|+++++|+++++.+
T Consensus       189 giGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~  228 (243)
T COG1137         189 GIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN  228 (243)
T ss_pred             CceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence            99999999996 68999999999999999999999998653

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.8e-21  Score=198.19  Aligned_cols=114  Identities=32%  Similarity=0.462  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +.+.+++++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       118 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~  192 (280)
T PRK13633        118 PEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK  192 (280)
T ss_pred             HHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            3445677899999999998888855     56999999999999999999999999999999999999999999999986


Q ss_pred             -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       .|+|||+++|++ +++.. +|++++|++|+++..|+++++.
T Consensus       193 ~~g~tillvtH~~-~~~~~-~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        193 KYGITIILITHYM-EEAVE-ADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             hcCCEEEEEecCh-HHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence             499999999996 56655 9999999999999999998764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.8e-21  Score=196.65  Aligned_cols=114  Identities=31%  Similarity=0.466  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            4 SEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++.+++++++++.+||. ...++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       119 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  193 (280)
T PRK13649        119 EEAEALAREKLALVGISESLFEKNP-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ  193 (280)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            34456678899999997 4556644     56999999999999999999999999999999999999999999999987


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +|+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       194 ~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (280)
T PRK13649        194 SGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKPKDIF  233 (280)
T ss_pred             CCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            799999999996 6788999999999999999999988763

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.6e-21  Score=192.87  Aligned_cols=112  Identities=23%  Similarity=0.358  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g   84 (546)
                      .+++++++++.+||++..|+.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus       106 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~  180 (232)
T PRK10771        106 QREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ  180 (232)
T ss_pred             HHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            4567899999999988888755     56999999999999999999999999999999999999999999999976 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +|+|+++|++ .++.+++|++++|++|++++.|++++..
T Consensus       181 ~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~  218 (232)
T PRK10771        181 LTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL  218 (232)
T ss_pred             CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999996 6788999999999999999999887653

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.8e-21  Score=197.53  Aligned_cols=113  Identities=30%  Similarity=0.456  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      .+.+++++++++.+||++..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       111 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~  185 (274)
T PRK13644        111 IEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK  185 (274)
T ss_pred             HHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence            445667889999999998888754     569999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |.|||+++|++ .++ ..+|++++|++|++++.|++++..
T Consensus       186 g~til~~tH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~  223 (274)
T PRK13644        186 GKTIVYITHNL-EEL-HDADRIIVMDRGKIVLEGEPENVL  223 (274)
T ss_pred             CCEEEEEecCH-HHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence            99999999996 566 579999999999999999988753

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.87  E-value=1.7e-21  Score=197.10  Aligned_cols=111  Identities=27%  Similarity=0.422  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g   84 (546)
                      .+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus       120 ~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g  194 (269)
T PRK11831        120 LHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALG  194 (269)
T ss_pred             HHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence            3456788999999998888755     469999999999999999999999999999999999999999999999864 8


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      +|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus       195 ~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~  231 (269)
T PRK11831        195 VTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQAL  231 (269)
T ss_pred             cEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence            9999999995 788999999999999999999998765

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.6e-21  Score=194.05  Aligned_cols=113  Identities=26%  Similarity=0.494  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  186 (241)
T PRK10895        112 EQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS  186 (241)
T ss_pred             HHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence            344567889999999987766644     579999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |.|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus       187 g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~  224 (241)
T PRK10895        187 GLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEI  224 (241)
T ss_pred             CCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence            99999999996 689999999999999999999998765

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.5e-21  Score=205.08  Aligned_cols=113  Identities=31%  Similarity=0.516  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      +.+++++++++.+||++..|+.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ 
T Consensus       107 ~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~  181 (354)
T TIGR02142       107 ERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF  181 (354)
T ss_pred             HHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence            34567899999999998888754     569999999999999999999999999999999999999999999999875 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |+|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       182 g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  220 (354)
T TIGR02142       182 GIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW  220 (354)
T ss_pred             CCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence            89999999996 7889999999999999999999988764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.86  E-value=1.6e-21  Score=191.28  Aligned_cols=111  Identities=34%  Similarity=0.527  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus       109 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~  182 (220)
T cd03263         109 EIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-G  182 (220)
T ss_pred             HHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-C
Confidence            34567889999999988877755     46999999999999999999999999999999999999999999999976 5


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      +|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       183 ~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         183 RSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             CEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            9999999996 678889999999999999999988753

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.86  E-value=1.8e-21  Score=193.77  Aligned_cols=113  Identities=27%  Similarity=0.490  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHcCCcc--cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            4 SEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++.+++++++++.+||.+  ..++.     ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       108 ~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~  182 (242)
T cd03295         108 EKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ  182 (242)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence            344567889999999985  56664     45799999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++ |+|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus       183 ~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  223 (242)
T cd03295         183 QELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI  223 (242)
T ss_pred             HHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            74 89999999996 678899999999999999999988764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.86  E-value=2.3e-21  Score=194.78  Aligned_cols=113  Identities=27%  Similarity=0.402  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            4 SEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      .+.++++.++++.+||.+.. ++     .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       126 ~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~  200 (257)
T PRK10619        126 QEARERAVKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE  200 (257)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence            34456788999999997653 55     3457999999999999999999999999999999999999999999999988


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      +|+|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus       201 ~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  239 (257)
T PRK10619        201 EGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGAPEQL  239 (257)
T ss_pred             cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            899999999996 678889999999999999999988764

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.86  E-value=2.3e-21  Score=193.57  Aligned_cols=112  Identities=29%  Similarity=0.447  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            4 SEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++.+++++++++.+||.    +..++.     ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus       115 ~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  189 (247)
T TIGR00972       115 KELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE  189 (247)
T ss_pred             HHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            34456788999999997    555553     457999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++++ +|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       190 ~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  230 (247)
T TIGR00972       190 LKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPTEQI  230 (247)
T ss_pred             HHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9874 8999999996 678899999999999999999998765

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.86  E-value=1.9e-21  Score=192.22  Aligned_cols=112  Identities=29%  Similarity=0.431  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHcCCc---ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            6 KRTLVERTIIEMGLQ---DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~---~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      .+++++++++.+||.   +..++.     +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus        99 ~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~  173 (230)
T TIGR02770        99 ARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ  173 (230)
T ss_pred             HHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence            345688999999997   345554     456999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |+|||+++|++ +++..++|++++|++|+++..|+++++.
T Consensus       174 ~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~  214 (230)
T TIGR02770       174 LFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF  214 (230)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            4 89999999996 6888999999999999999999987653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.8e-21  Score=195.11  Aligned_cols=110  Identities=24%  Similarity=0.383  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~   85 (546)
                      .++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus       131 ~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~  205 (255)
T PRK11300        131 LDRAATWLERVGLLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNV  205 (255)
T ss_pred             HHHHHHHHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence            356788899999988777755     569999999999999999999999999999999999999999999999875 89


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus       206 tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~  241 (255)
T PRK11300        206 TVLLIEHDM-KLVMGISDRIYVVNQGTPLANGTPEEI  241 (255)
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEEECCeEEecCCHHHH
Confidence            999999995 788899999999999999999998764

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3.7e-21  Score=195.73  Aligned_cols=114  Identities=29%  Similarity=0.434  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      .++.+++++++++.+||++..++.+     ..||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++++
T Consensus       114 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~  188 (279)
T PRK13635        114 REEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE  188 (279)
T ss_pred             HHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            3445677899999999998888755     56999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |+|||+++|++ .++. .+|++++|++|++++.|+++++.
T Consensus       189 ~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13635        189 QKGITVLSITHDL-DEAA-QADRVIVMNKGEILEEGTPEEIF  228 (279)
T ss_pred             cCCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence            5 89999999996 5665 59999999999999999988764

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.86  E-value=1.5e-21  Score=189.42  Aligned_cols=101  Identities=32%  Similarity=0.464  Sum_probs=93.6

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      ++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti  179 (205)
T cd03226         105 EQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV  179 (205)
T ss_pred             HHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence            56889999999998887754     5799999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEE
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTV  114 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v  114 (546)
                      |+++|++ .++.+++|++++|++|+++
T Consensus       180 i~~sH~~-~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         180 IVITHDY-EFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             EEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence            9999996 6788899999999999975

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.3e-21  Score=205.67  Aligned_cols=114  Identities=26%  Similarity=0.426  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      ++.+++++++++.+||++..++.     ++.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++++ 
T Consensus       139 ~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~  213 (400)
T PRK10070        139 EERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK  213 (400)
T ss_pred             HHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence            44567788999999998888774     457999999999999999999999999999999999999999999999976 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      .|+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       214 ~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~  253 (400)
T PRK10070        214 HQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL  253 (400)
T ss_pred             CCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence            589999999995 7889999999999999999999988754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.86  E-value=2.5e-21  Score=192.62  Aligned_cols=112  Identities=27%  Similarity=0.396  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .++++++++.+||. +..++.++    .+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus       120 ~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  195 (243)
T TIGR01978       120 LKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDR  195 (243)
T ss_pred             HHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCc
Confidence            46788899999997 45666432    24999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhh-cCeEEEEeCCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~-~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |||+++|++ +++... +|++++|++|++++.|+++++.
T Consensus       196 tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       196 SFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             EEEEEEecH-HHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence            999999996 677777 8999999999999999987543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.86  E-value=1.7e-21  Score=189.64  Aligned_cols=108  Identities=35%  Similarity=0.580  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      .+.+++++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       103 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~  177 (210)
T cd03269         103 EEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA  177 (210)
T ss_pred             HHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence            344567889999999988777754     569999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      |+|||+++|++ .++.+++|++++|++|++++.|
T Consensus       178 ~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         178 GKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             CCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence            89999999996 6788999999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.86  E-value=1.1e-21  Score=201.40  Aligned_cols=118  Identities=27%  Similarity=0.471  Sum_probs=110.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++.+++|+++.+.|+|++..|+     ++++|||||||||+|||+|+.+|+++++|||+|+||...+.++...|+++
T Consensus       105 ~~k~ei~~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l  179 (338)
T COG3839         105 VPKAEIDKRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL  179 (338)
T ss_pred             CchHHHHHHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH
Confidence            3678899999999999999999998     56789999999999999999999999999999999999999999999999


Q ss_pred             Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+ .|.|+|.+|||. .|+..++|||.+|++|++...|++.++-+
T Consensus       180 h~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~  223 (338)
T COG3839         180 HERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE  223 (338)
T ss_pred             HHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence            87 589999999995 89999999999999999999999998753

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.86  E-value=2.4e-21  Score=204.12  Aligned_cols=115  Identities=27%  Similarity=0.423  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++++++++++++.+||++..|+.+     ..||||||||++||++|+++|+||+|||||+|||+.++.++.+.|+++++
T Consensus       138 ~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~  212 (382)
T TIGR03415       138 EAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA  212 (382)
T ss_pred             HHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence            4566778899999999998888855     46999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       213 ~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~  253 (382)
T TIGR03415       213 KLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV  253 (382)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            4 99999999995 7899999999999999999999998764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=4.5e-21  Score=194.05  Aligned_cols=112  Identities=28%  Similarity=0.402  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      +..++++++++.+|+.+..|+.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       118 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~  192 (269)
T PRK13648        118 EMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH  192 (269)
T ss_pred             HHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            34567888999999988777744     579999999999999999999999999999999999999999999999864 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |+|||+++|++ .++.. +|++++|++|++++.|++++..
T Consensus       193 ~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~~~~~  230 (269)
T PRK13648        193 NITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTPTEIF  230 (269)
T ss_pred             CCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence            89999999997 56665 9999999999999999988764

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.86  E-value=2.2e-21  Score=191.02  Aligned_cols=110  Identities=29%  Similarity=0.499  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++++++++.+||++..++.+     .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.
T Consensus        90 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~  164 (223)
T TIGR03771        90 DFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT  164 (223)
T ss_pred             HHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence            3456888999999988777755     46999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |+|+++|++ .++.+.+|+++++ +|++++.|++++.
T Consensus       165 tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~  199 (223)
T TIGR03771       165 AILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL  199 (223)
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence            999999996 6789999999999 8999999998765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.7e-21  Score=193.24  Aligned_cols=111  Identities=25%  Similarity=0.379  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~l-gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      ++.++++++.+ ++.+..++.     ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus       114 ~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~  188 (237)
T PRK11614        114 QERIKWVYELFPRLHERRIQR-----AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGM  188 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCC
Confidence            44567778888 577666664     457999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |||+++|++ .++.+++|++++|++|++++.|+++++.
T Consensus       189 tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~  225 (237)
T PRK11614        189 TIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL  225 (237)
T ss_pred             EEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence            999999996 6899999999999999999999988653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.86  E-value=1.9e-21  Score=208.73  Aligned_cols=117  Identities=32%  Similarity=0.411  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      .++++++|+++++..||..-    ..+.++++||||||||++|||+|+.+|++|++|||||.||+..+.+++++|+++.+
T Consensus       402 ~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~  477 (539)
T COG1123         402 GAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE  477 (539)
T ss_pred             hHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH
Confidence            35677889999999999841    23447889999999999999999999999999999999999999999999999987


Q ss_pred             -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                       .|.|.++++|| ..-+.++||||.+|++|++|..|+.+++.+
T Consensus       478 e~g~t~lfISHD-l~vV~~i~drv~vm~~G~iVE~G~~~~v~~  519 (539)
T COG1123         478 ELGLTYLFISHD-LAVVRYIADRVAVMYDGRIVEEGPTEKVFE  519 (539)
T ss_pred             HhCCEEEEEeCC-HHHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence             49999999999 588999999999999999999998887643

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.86  E-value=2e-21  Score=189.71  Aligned_cols=106  Identities=35%  Similarity=0.562  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||++..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       108 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  182 (213)
T cd03235         108 ADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG  182 (213)
T ss_pred             HHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence            34567889999999988777754     4699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      +|||+++|++ +++.+++|++++|++| +++.|
T Consensus       183 ~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         183 MTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             CEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence            9999999996 6888999999999886 56554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.86  E-value=2.9e-21  Score=193.50  Aligned_cols=112  Identities=29%  Similarity=0.414  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      +.++.++++++.+|+.+..++.     ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       122 ~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~  196 (252)
T TIGR03005       122 EAEKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEH  196 (252)
T ss_pred             HHHHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            3456788999999998877764     4579999999999999999999999999999999999999999999999874 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |.|+|+++|++ .++.+++|++++|++|+++..|+.++.
T Consensus       197 ~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T TIGR03005       197 DLTMLLVTHEM-GFAREFADRVCFFDKGRIVEQGKPDEI  234 (252)
T ss_pred             CcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            89999999996 678899999999999999999988764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.4e-21  Score=194.46  Aligned_cols=111  Identities=24%  Similarity=0.419  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      ..++++++++.+||++..++.+     +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus       115 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~  189 (255)
T PRK11231        115 DNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK  189 (255)
T ss_pred             HHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence            3456888999999988777754     56999999999999999999999999999999999999999999999987899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       190 tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  225 (255)
T PRK11231        190 TVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV  225 (255)
T ss_pred             EEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence            999999996 688999999999999999999988764

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.86  E-value=1.8e-21  Score=190.93  Aligned_cols=111  Identities=28%  Similarity=0.478  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            6 KRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         6 ~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      .+++++++++.+ ++.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       108 ~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  182 (222)
T cd03224         108 RKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG  182 (222)
T ss_pred             HHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC
Confidence            345567788888 5777677644     5699999999999999999999999999999999999999999999998888


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      +|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       183 ~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (222)
T cd03224         183 VTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL  219 (222)
T ss_pred             CEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence            9999999996 678999999999999999999988764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3e-21  Score=192.13  Aligned_cols=111  Identities=27%  Similarity=0.432  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..+++++.++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       117 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~  191 (242)
T PRK11124        117 QALARAEKLLERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETG  191 (242)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence            34567888999999988777754     5799999999999999999999999999999999999999999999998789


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~  121 (546)
                      +|+|+++|++ .++.+++|++++|++|++++.|++++
T Consensus       192 ~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~~~  227 (242)
T PRK11124        192 ITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASC  227 (242)
T ss_pred             CEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHH
Confidence            9999999996 67888999999999999999998765

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.86  E-value=1.7e-21  Score=189.39  Aligned_cols=105  Identities=34%  Similarity=0.528  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      +++++++++.+||++..++.+     +.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t  178 (208)
T cd03268         104 KKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT  178 (208)
T ss_pred             HHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence            456788999999988877754     469999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      +|+++|++ .++.+++|++++|++|++++.|
T Consensus       179 ii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         179 VLISSHLL-SEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             EEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence            99999996 6788899999999999998765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3.2e-21  Score=197.14  Aligned_cols=113  Identities=27%  Similarity=0.381  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      +..++++++++.++|. +..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ 
T Consensus       125 ~~~~~~~~ll~~~~L~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~  199 (289)
T PRK13645        125 EAYKKVPELLKLVQLPEDYVKRSP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE  199 (289)
T ss_pred             HHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            3446678899999994 5677644     56999999999999999999999999999999999999999999999986 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      .|+|||+++|++ +++.+++|++++|++|++++.|++++..
T Consensus       200 ~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (289)
T PRK13645        200 YKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIGSPFEIF  239 (289)
T ss_pred             cCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            489999999996 6789999999999999999999988753

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.86  E-value=3.4e-21  Score=191.66  Aligned_cols=110  Identities=24%  Similarity=0.406  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++++++++.+|+++..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++
T Consensus       120 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~  193 (242)
T TIGR03411       120 EKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KH  193 (242)
T ss_pred             HHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CC
Confidence            4567889999999988777755     46999999999999999999999999999999999999999999999976 68


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       194 tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~~~  229 (242)
T TIGR03411       194 SVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLDQV  229 (242)
T ss_pred             EEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence            999999995 788899999999999999999987764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.86  E-value=4.1e-21  Score=190.51  Aligned_cols=112  Identities=38%  Similarity=0.568  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +..+.++++++.+||++..++.+     ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus       108 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~  182 (236)
T TIGR03864       108 EARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ  182 (236)
T ss_pred             HHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC
Confidence            34567888999999988877755     46999999999999999999999999999999999999999999999985 6


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |.|+|+++|++ .++. .+|++++|++|+++..|++++..
T Consensus       183 ~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~~~  220 (236)
T TIGR03864       183 GLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAELR  220 (236)
T ss_pred             CCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence            89999999996 5665 59999999999999999887654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.86  E-value=2.7e-21  Score=194.85  Aligned_cols=111  Identities=28%  Similarity=0.519  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +.+++++++++.+||.+..|+.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus       128 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  202 (262)
T PRK09984        128 EQKQRALQALTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND  202 (262)
T ss_pred             HHHHHHHHHHHHcCCHHHHhCCc-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc
Confidence            34567899999999988777755     46999999999999999999999999999999999999999999999986 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~  121 (546)
                      |.|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus       203 g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~  239 (262)
T PRK09984        203 GITVVVTLHQV-DYALRYCERIVALRQGHVFYDGSSQQ  239 (262)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            89999999996 67899999999999999999998875

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=6.4e-21  Score=194.26  Aligned_cols=114  Identities=30%  Similarity=0.466  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.+++++++++.+||++..++.     ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       117 ~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~  191 (282)
T PRK13640        117 RPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK  191 (282)
T ss_pred             HHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence            345567789999999999877774     467999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |.|||+++|++ .++ ..+|++++|++|+++..|+++++.
T Consensus       192 ~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~~~  231 (282)
T PRK13640        192 KNNLTVISITHDI-DEA-NMADQVLVLDDGKLLAQGSPVEIF  231 (282)
T ss_pred             hcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence            4 89999999996 556 579999999999999999998764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.86  E-value=3.8e-21  Score=194.17  Aligned_cols=113  Identities=26%  Similarity=0.414  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +.+++++++++.+||. +..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       125 ~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~  199 (265)
T TIGR02769       125 EQKARIAELLDMVGLRSEDADKLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA  199 (265)
T ss_pred             HHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            3456788999999996 5667644     569999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       |+|||+++|++ ..+.+++|++++|++|++++.|+++++.
T Consensus       200 ~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (265)
T TIGR02769       200 FGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVEECDVAQLL  239 (265)
T ss_pred             cCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence             89999999995 6788899999999999999999988653

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.86  E-value=3.4e-21  Score=193.74  Aligned_cols=112  Identities=33%  Similarity=0.444  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH------hCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~------~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      .+++++++++.+||.+..++.+     ..||||||||++||++|+      .+|++|+|||||+|||+.++..+.+.|++
T Consensus       111 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (258)
T PRK13548        111 DDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ  185 (258)
T ss_pred             HHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            3456888999999988777755     569999999999999999      59999999999999999999999999999


Q ss_pred             HH-hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           80 LS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        80 l~-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ ++|.|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       186 ~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (258)
T PRK13548        186 LAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPAEVL  229 (258)
T ss_pred             HHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence            98 5789999999996 6788899999999999999999887653

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.86  E-value=3.5e-21  Score=193.37  Aligned_cols=111  Identities=33%  Similarity=0.514  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      ..++++++++.+||.+..++.+     ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.
T Consensus       114 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  188 (256)
T TIGR03873       114 DAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV  188 (256)
T ss_pred             HHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence            3457889999999988777755     46999999999999999999999999999999999999999999999987789


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ +++.+++|++++|++|+++..|+.++.
T Consensus       189 tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  224 (256)
T TIGR03873       189 TVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV  224 (256)
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence            999999996 688899999999999999999988764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=4.1e-21  Score=192.12  Aligned_cols=115  Identities=25%  Similarity=0.374  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      ..+.++++++.+||.+..+... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+
T Consensus       119 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~  196 (250)
T PRK14245        119 IRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDY  196 (250)
T ss_pred             HHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCC
Confidence            3456788999999864321111 12456799999999999999999999999999999999999999999999995 479


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |||+++|++ .++.+++|++++|++|++++.|+++++.
T Consensus       197 tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~~~~  233 (250)
T PRK14245        197 TIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTKKIF  233 (250)
T ss_pred             eEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence            999999996 6788999999999999999999988763

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.86  E-value=3.5e-21  Score=188.14  Aligned_cols=106  Identities=32%  Similarity=0.496  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g   84 (546)
                      .+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus       108 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  182 (214)
T cd03297         108 DRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN  182 (214)
T ss_pred             HHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence            3467888999999987777644     569999999999999999999999999999999999999999999999875 8


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      +|||+++|++ .++.+++|++++|++|+++..|
T Consensus       183 ~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         183 IPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             cEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence            9999999995 6788999999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.86  E-value=3.1e-21  Score=188.05  Aligned_cols=106  Identities=36%  Similarity=0.509  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..+.++++++.+||.+..++.+     ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus       106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~  179 (211)
T cd03264         106 EVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-D  179 (211)
T ss_pred             HHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-C
Confidence            34567889999999988777754     56999999999999999999999999999999999999999999999986 5


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      .|||+++|++ .++.+++|++++|++|+++..|
T Consensus       180 ~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         180 RIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             CEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence            8999999996 6788899999999999998765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.9e-21  Score=194.07  Aligned_cols=112  Identities=28%  Similarity=0.411  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g   84 (546)
                      .+++++++++.+||++..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus       120 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~  194 (265)
T PRK10253        120 DEEAVTKAMQATGITHLADQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG  194 (265)
T ss_pred             HHHHHHHHHHHcCCHHHhcCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence            3457889999999988777754     57999999999999999999999999999999999999999999999987 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      .|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       195 ~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        195 YTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999996 6899999999999999999999987754

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=3.2e-21  Score=174.84  Aligned_cols=114  Identities=25%  Similarity=0.410  Sum_probs=107.1

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++.+.++.++++.+.|.+.+|+     .+-.|||||+|||+|||+|+.+|++|++||||+.|||.-..++++++|+|
T Consensus       113 l~~~qa~~~a~ellkrlrl~~~adr-----~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel  187 (242)
T COG4161         113 LSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL  187 (242)
T ss_pred             CCHHHHHHHHHHHHHHhcccccccc-----CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH
Confidence            5778889999999999999999998     56679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS  120 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~  120 (546)
                      +..|.|-++++|.. .-..+.+.+|+.|.+|+++..|+.+
T Consensus       188 ~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~  226 (242)
T COG4161         188 AETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDAS  226 (242)
T ss_pred             HhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchh
Confidence            99999999999995 6778889999999999999999875

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.9e-21  Score=201.67  Aligned_cols=111  Identities=28%  Similarity=0.466  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~   85 (546)
                      +++++++++.+||++..++.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus       106 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~  180 (352)
T PRK11144        106 VAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI  180 (352)
T ss_pred             HHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            467889999999998888754     579999999999999999999999999999999999999999999999875 89


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |+|+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       181 tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~  217 (352)
T PRK11144        181 PILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVW  217 (352)
T ss_pred             eEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence            999999996 7899999999999999999999998764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.85  E-value=5.1e-21  Score=188.55  Aligned_cols=108  Identities=30%  Similarity=0.395  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       117 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~  191 (224)
T cd03220         117 KEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ  191 (224)
T ss_pred             HHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence            344556788999999988888765     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      |.|||+++|++ .++.+++|++++|++|+++..|
T Consensus       192 ~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         192 GKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence            89999999995 6788999999999999998765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.85  E-value=3.8e-21  Score=187.36  Aligned_cols=106  Identities=29%  Similarity=0.426  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g   84 (546)
                      .+++++++++.+||++..++.+     ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~  179 (211)
T cd03298         105 DRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETK  179 (211)
T ss_pred             HHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            4567889999999988777754     57999999999999999999999999999999999999999999999986 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      .|||+++|++ .++.+++|++++|++|+++..|
T Consensus       180 ~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         180 MTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             CEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence            9999999995 7888999999999999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=4.5e-21  Score=193.63  Aligned_cols=111  Identities=37%  Similarity=0.487  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g   84 (546)
                      .+++++++++.+||++..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus       124 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~  198 (265)
T PRK10575        124 DREKVEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG  198 (265)
T ss_pred             HHHHHHHHHHHcCCHHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            3467889999999988777755     469999999999999999999999999999999999999999999999864 8


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      .|||+++|++ .++.+.+|++++|++|+++..|++++.
T Consensus       199 ~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~  235 (265)
T PRK10575        199 LTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAEL  235 (265)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHh
Confidence            9999999996 688899999999999999999988764

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.85  E-value=3.9e-21  Score=187.21  Aligned_cols=102  Identities=37%  Similarity=0.550  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       110 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~  184 (211)
T cd03225         110 EIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG  184 (211)
T ss_pred             HHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            34567888999999987777754     5699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      +|||+++|++ .++.+++|++++|++|+
T Consensus       185 ~tvi~~sH~~-~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         185 KTIIIVTHDL-DLLLELADRVIVLEDGK  211 (211)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence            9999999996 68888999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.85  E-value=5.1e-21  Score=193.47  Aligned_cols=112  Identities=20%  Similarity=0.336  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +..+.++++++.+||. +..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       124 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  198 (267)
T PRK15112        124 QREKQIIETLRQVGLLPDHASYYP-----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK  198 (267)
T ss_pred             HHHHHHHHHHHHcCCChHHHhcCc-----hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence            3456788999999994 5666643     569999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                       |.|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus       199 ~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  237 (267)
T PRK15112        199 QGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGSTADV  237 (267)
T ss_pred             cCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence             89999999996 788889999999999999999988764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.85  E-value=3.9e-21  Score=188.98  Aligned_cols=107  Identities=32%  Similarity=0.478  Sum_probs=98.9

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      +++.++++.+||++..|+.+     +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|+||
T Consensus       103 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~ti  177 (223)
T TIGR03740       103 SRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITV  177 (223)
T ss_pred             HHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence            46788999999998877754     4699999999999999999999999999999999999999999999998789999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETS  120 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~  120 (546)
                      |+++|++ .++.+.+|++++|++|+++..|++.
T Consensus       178 ii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~  209 (223)
T TIGR03740       178 ILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN  209 (223)
T ss_pred             EEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence            9999996 6788999999999999999999865

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.1e-21  Score=191.41  Aligned_cols=110  Identities=24%  Similarity=0.393  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            6 KRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      .+++++++++.+|+.    +..++     .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       127 ~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~  201 (258)
T PRK14268        127 LDGVVENALRSAALWDETSDRLKS-----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK  201 (258)
T ss_pred             HHHHHHHHHHHcCCCcchhhhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence            345678899999984    33444     345799999999999999999999999999999999999999999999996


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      + |+|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus       202 ~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  240 (258)
T PRK14268        202 K-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFGQTRQI  240 (258)
T ss_pred             h-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            5 79999999995 678899999999999999999998765

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.85  E-value=6.7e-21  Score=188.95  Aligned_cols=113  Identities=28%  Similarity=0.476  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      +..+.++++++.+||.+..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       105 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~  179 (235)
T cd03299         105 EIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF  179 (235)
T ss_pred             HHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            44566788999999988888755     569999999999999999999999999999999999999999999999864 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |+|+|+++|++ .++.+++|++++|++|+++..|+.++..
T Consensus       180 ~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~  218 (235)
T cd03299         180 GVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF  218 (235)
T ss_pred             CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            99999999996 6788999999999999999999887643

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=1.7e-21  Score=184.48  Aligned_cols=116  Identities=27%  Similarity=0.438  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            4 SEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++.+++|+..|+.-.|- ++.|++=  ....+|||||+||++|||+|+.+|+||++|||||.|||.+..+|-+++.+|++
T Consensus       120 ~~ldeiVe~sLk~AaLWdEVKDrL~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~  197 (253)
T COG1117         120 KELDEIVESSLKKAALWDEVKDRLH--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK  197 (253)
T ss_pred             HHHHHHHHHHHHHhHhHHHhHHHhh--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh
Confidence            45678899999998884 4666642  24568999999999999999999999999999999999999999999999984


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       .-|||++||.+ ..+.+..|+...+..|+++.+|+++++.
T Consensus       198 -~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~~iF  236 (253)
T COG1117         198 -KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTDKIF  236 (253)
T ss_pred             -ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence             58999999995 7899999999999999999999999753

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.85  E-value=5.8e-21  Score=189.57  Aligned_cols=108  Identities=31%  Similarity=0.490  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++..++++++++.+||.+..|+.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       128 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  202 (236)
T cd03267         128 ARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE  202 (236)
T ss_pred             HHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            344566788999999998888865     469999999999999999999999999999999999999999999999864


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                       |+|||+++|++ +++.+++|++++|++|++++.|
T Consensus       203 ~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         203 RGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             CCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence             89999999996 6788999999999999998765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.85  E-value=4.6e-21  Score=187.03  Aligned_cols=103  Identities=31%  Similarity=0.446  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||++..++.+     ++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       112 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~  186 (214)
T cd03292         112 EIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG  186 (214)
T ss_pred             HHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence            34567889999999988777754     5699999999999999999999999999999999999999999999998789


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      +|||+++|++ .++.+++|++++|++|++
T Consensus       187 ~tiiivtH~~-~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         187 TTVVVATHAK-ELVDTTRHRVIALERGKL  214 (214)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence            9999999996 678889999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.85  E-value=4.7e-21  Score=187.07  Aligned_cols=102  Identities=35%  Similarity=0.508  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       113 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~  187 (214)
T TIGR02673       113 EIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG  187 (214)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            34567889999999987777754     5699999999999999999999999999999999999999999999998789


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      +|||+++|++ .++.+++|++++|++|+
T Consensus       188 ~tii~~tH~~-~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       188 TTVIVATHDL-SLVDRVAHRVIILDDGR  214 (214)
T ss_pred             CEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence            9999999996 78889999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.7e-21  Score=190.62  Aligned_cols=111  Identities=25%  Similarity=0.363  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            6 KRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      .+++++++++.+++.    +..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus       123 ~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~  197 (254)
T PRK14273        123 LDEIVEQSLKKSALWNEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK  197 (254)
T ss_pred             HHHHHHHHHHHhCCchhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence            456778888988873    34455     446799999999999999999999999999999999999999999999996


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + +.|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       198 ~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  237 (254)
T PRK14273        198 E-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESSTDELF  237 (254)
T ss_pred             c-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            4 79999999996 6788999999999999999999988753

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.9e-21  Score=190.37  Aligned_cols=114  Identities=26%  Similarity=0.362  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++++++++.+||.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+
T Consensus       122 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~  199 (253)
T PRK14242        122 LAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RY  199 (253)
T ss_pred             HHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CC
Confidence            3567788899999854221111 124567999999999999999999999999999999999999999999999964 79


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       200 tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14242        200 TIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQI  235 (253)
T ss_pred             eEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999996 678899999999999999999988764

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.85  E-value=9.9e-21  Score=189.32  Aligned_cols=112  Identities=29%  Similarity=0.436  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCeEEEeCCCCCCCHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFLDEPTSGLDSAAAFFVTQTL   77 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~-------~P~il~LDEPtsgLD~~~~~~v~~~L   77 (546)
                      +.+++++++++.+||.+..++.+     +.||||||||++||++|+.       +|++|+|||||+|||+.++..+.+.|
T Consensus       102 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L  176 (248)
T PRK03695        102 AVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL  176 (248)
T ss_pred             HHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            34567889999999988777754     5699999999999999998       67999999999999999999999999


Q ss_pred             HHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           78 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        78 ~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++++++|.|||+++|++ .++.+++|++++|++|+++..|+.+++
T Consensus       177 ~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  220 (248)
T PRK03695        177 SELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV  220 (248)
T ss_pred             HHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            99988899999999995 678999999999999999999988764

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=8.9e-21  Score=187.73  Aligned_cols=109  Identities=28%  Similarity=0.369  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      ++.+++++++++.+||++..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ 
T Consensus       120 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  194 (233)
T PRK11629        120 AEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL  194 (233)
T ss_pred             HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            344567899999999988777744     56999999999999999999999999999999999999999999999976 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET  119 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~  119 (546)
                      +|+|||+++|++ .++.. +|++++|++|+++..|+.
T Consensus       195 ~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~  229 (233)
T PRK11629        195 QGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL  229 (233)
T ss_pred             CCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence            589999999996 56655 689999999999988864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.85  E-value=4.9e-21  Score=187.44  Aligned_cols=102  Identities=33%  Similarity=0.508  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +.+++++++++.+||++..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus       116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~  190 (218)
T cd03255         116 ERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA  190 (218)
T ss_pred             HHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            34567889999999988777754     56999999999999999999999999999999999999999999999987 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      |+|||+++|++ .++. .+|++++|++|++
T Consensus       191 ~~tii~~sH~~-~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         191 GTTIVVVTHDP-ELAE-YADRIIELRDGKI  218 (218)
T ss_pred             CCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence            89999999996 5665 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.85  E-value=9.3e-21  Score=186.73  Aligned_cols=105  Identities=51%  Similarity=0.832  Sum_probs=94.7

Q ss_pred             HHHHH-HHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            8 TLVER-TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         8 ~~v~~-~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      +++++ .++.+++.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~t  195 (226)
T cd03234         121 KRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI  195 (226)
T ss_pred             HHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence            34555 888899987777644     569999999999999999999999999999999999999999999999878999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      +|+++|++..++.+++|++++|++|++++.|
T Consensus       196 iii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         196 VILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             EEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            9999999756899999999999999998875

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.85  E-value=1.1e-20  Score=187.05  Aligned_cols=112  Identities=27%  Similarity=0.419  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      ...+.++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~  180 (232)
T cd03300         106 EIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL  180 (232)
T ss_pred             HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence            34567788999999988887754     579999999999999999999999999999999999999999999999874 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |+|||+++|++ .++.+++|++++|++|++++.|+.++.
T Consensus       181 ~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~  218 (232)
T cd03300         181 GITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI  218 (232)
T ss_pred             CCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence            89999999996 678999999999999999999987654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=9.7e-21  Score=189.57  Aligned_cols=114  Identities=25%  Similarity=0.431  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .++.++++++.+||.+...+... ..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+
T Consensus       122 ~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~  199 (251)
T PRK14244        122 LDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NF  199 (251)
T ss_pred             HHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence            34567889999999653212111 14567999999999999999999999999999999999999999999999964 89


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       200 tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (251)
T PRK14244        200 TIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQEI  235 (251)
T ss_pred             eEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            999999996 678899999999999999999988764

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.85  E-value=8.6e-21  Score=185.32  Aligned_cols=106  Identities=25%  Similarity=0.379  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~   85 (546)
                      +++++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+
T Consensus       106 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~  180 (213)
T TIGR01277       106 QEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR  180 (213)
T ss_pred             HHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence            456788999999988777744     579999999999999999999999999999999999999999999999864 89


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE  118 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~  118 (546)
                      |||+++|++ .++.+++|++++|++|+++..|+
T Consensus       181 tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       181 TLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             EEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence            999999995 67888999999999999998875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.85  E-value=1.1e-20  Score=190.01  Aligned_cols=111  Identities=30%  Similarity=0.436  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            6 KRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      .+++++++++.+++.+ ..++.     +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ 
T Consensus       127 ~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  201 (258)
T PRK11701        127 IRATAGDWLERVEIDAARIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL  201 (258)
T ss_pred             HHHHHHHHHHHcCCChhHHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            3556788999999974 55654     4579999999999999999999999999999999999999999999999874 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |.|||+++|++ .++.+.+|++++|++|++++.|+++++
T Consensus       202 ~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~  239 (258)
T PRK11701        202 GLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLTDQV  239 (258)
T ss_pred             CcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            89999999995 778889999999999999999998764

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.1e-20  Score=189.04  Aligned_cols=112  Identities=27%  Similarity=0.409  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.++.++++++.+||.+    ..|+     .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       118 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14247        118 ELQERVRWALEKAQLWDEVKDRLDA-----PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL  192 (250)
T ss_pred             HHHHHHHHHHHHcCCCcchhhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            34567888999999864    3444     45679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ |+|+|+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       193 ~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14247        193 KK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF  233 (250)
T ss_pred             hc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence            65 79999999996 6788999999999999999999988653

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.85  E-value=1.1e-20  Score=189.69  Aligned_cols=109  Identities=24%  Similarity=0.341  Sum_probs=98.5

Q ss_pred             HHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            8 TLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         8 ~~v~~~l~~lgL~~---~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      ++++++++.+||.+   ..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus       116 ~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~  190 (254)
T PRK10418        116 ATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR  190 (254)
T ss_pred             HHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc
Confidence            56788999999976   3455     3457999999999999999999999999999999999999999999999986 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |+|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus       191 g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~  228 (254)
T PRK10418        191 ALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETL  228 (254)
T ss_pred             CcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            89999999996 678899999999999999999998865

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.85  E-value=9.7e-21  Score=191.93  Aligned_cols=110  Identities=27%  Similarity=0.472  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++++++++.+||.+..|+.++     .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus       119 ~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~  193 (272)
T PRK15056        119 DRQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK  193 (272)
T ss_pred             HHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence            34567889999999988888654     6999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+++|+++++ +|++++.|+++++
T Consensus       194 tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~  228 (272)
T PRK15056        194 TMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT  228 (272)
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence            999999996 6888999999877 8999999988764

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.1e-20  Score=191.41  Aligned_cols=113  Identities=25%  Similarity=0.439  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||++..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus       117 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~  191 (271)
T PRK13632        117 KKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT  191 (271)
T ss_pred             HHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            344567889999999998888755     569999999999999999999999999999999999999999999999876


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       |+|||+++|++ .++ ..+|++++|++|+++..|++++..
T Consensus       192 ~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~  230 (271)
T PRK13632        192 RKKTLISITHDM-DEA-ILADKVIVFSEGKLIAQGKPKEIL  230 (271)
T ss_pred             cCcEEEEEEech-hHH-hhCCEEEEEECCEEEEecCHHHHh
Confidence             59999999997 456 479999999999999999887653

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=5.5e-21  Score=184.06  Aligned_cols=120  Identities=29%  Similarity=0.468  Sum_probs=113.2

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      |++++.++.++.+|+.+++......+|     ++||.|.+|++.+-.+++++|++++||||+|||||.+.+.+-+.+.++
T Consensus       102 m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~l  176 (300)
T COG4152         102 MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL  176 (300)
T ss_pred             CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHH
Confidence            678899999999999999998887755     679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF  126 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f  126 (546)
                      +++|.|||+++|+ .+.+.++||++++|++|+.|.+|+.+++..-|
T Consensus       177 k~~GatIifSsH~-Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~  221 (300)
T COG4152         177 KEEGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF  221 (300)
T ss_pred             HhcCCEEEEecch-HHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence            9999999999999 58999999999999999999999999987744

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.84  E-value=1.5e-22  Score=194.57  Aligned_cols=208  Identities=23%  Similarity=0.338  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHHHHhhcchhHH-HHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHhhhh-hhHHhhh
Q 009033          224 MQAFTLTKRSFVNMSRDFGYY-WLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGF-PSFVEDM  301 (546)
Q Consensus       224 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~~~~-p~~~~er  301 (546)
                      +|++.|++|+++..+|||.+. ..+++..+++++++|.+|.+++++.++. ++.+++++...+..+...... .....|+
T Consensus         1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (210)
T PF01061_consen    1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER   79 (210)
T ss_pred             CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence            599999999999999999888 8999999999999999999998544455 777777777666665444443 7788999


Q ss_pred             HHHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 009033          302 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN  381 (546)
Q Consensus       302 ~vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~  381 (546)
                      ..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+  +++.+++.++++..++.++|.+++.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~  157 (210)
T PF01061_consen   80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS  157 (210)
T ss_pred             cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence            9999999999999999999999999999999999999999999999888  66777777788888889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhh
Q 009033          382 FLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDL  436 (546)
Q Consensus       382 ~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef  436 (546)
                      ...+..+.+.+..++++++|.+.+.+.+|+ +|+| +.|+||++|++|++..++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~-~~~~-i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  158 FRDASAISSLILLLLFFLSGVFFPLSSLPS-WLRW-ISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             hhhhhhhhhhcccccccceeeecchHHChH-HHHH-HHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999995 3444 9999999999999999876

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.84  E-value=9e-21  Score=184.87  Aligned_cols=103  Identities=30%  Similarity=0.477  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||++..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       111 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~  185 (213)
T cd03262         111 EAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG  185 (213)
T ss_pred             HHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcC
Confidence            34567888999999988777754     5799999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      +|||+++|++ .++.+++|++++|++|++
T Consensus       186 ~tvi~~sh~~-~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         186 MTMVVVTHEM-GFAREVADRVIFMDDGRI  213 (213)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence            9999999996 788899999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.84  E-value=1.7e-20  Score=187.82  Aligned_cols=111  Identities=23%  Similarity=0.361  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .++++++++.+||. +..++.++    .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus       127 ~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~  202 (252)
T CHL00131        127 LEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN  202 (252)
T ss_pred             HHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence            35678889999996 35555432    25999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhh-cCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~-~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ +.+... +|++++|++|++++.|+++.+
T Consensus       203 tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~  239 (252)
T CHL00131        203 SIILITHYQ-RLLDYIKPDYVHVMQNGKIIKTGDAELA  239 (252)
T ss_pred             EEEEEecCH-HHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence            999999996 566666 899999999999999998843

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.84  E-value=1.4e-20  Score=188.61  Aligned_cols=111  Identities=33%  Similarity=0.465  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            6 KRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      .++.++++++.+|+. +..++.     ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus       124 ~~~~~~~~l~~l~l~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~  198 (253)
T TIGR02323       124 IRAAAHDWLEEVEIDPTRIDDL-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL  198 (253)
T ss_pred             HHHHHHHHHHHcCCChhhhhcC-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence            346778899999996 366664     456999999999999999999999999999999999999999999999876 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |.|||+++|++ .++...+|++++|++|+++..|+++++
T Consensus       199 ~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~~~~~~~  236 (253)
T TIGR02323       199 GLAVIIVTHDL-GVARLLAQRLLVMQQGRVVESGLTDQV  236 (253)
T ss_pred             CCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEECCHHHH
Confidence            89999999995 688889999999999999999988765

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.84  E-value=9.6e-21  Score=209.26  Aligned_cols=115  Identities=30%  Similarity=0.440  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      +.+.+++++++++.+||.+   ..|+.     +.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus       127 ~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~  201 (529)
T PRK15134        127 REAARGEILNCLDRVGIRQAAKRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE  201 (529)
T ss_pred             HHHHHHHHHHHHHHCCCCChHHHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence            3455678899999999975   34664     457999999999999999999999999999999999999999999999


Q ss_pred             HHhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           80 LSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        80 l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++++ |.|||+++|++ .++.+++|+|++|++|++++.|+++++.
T Consensus       202 l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~  245 (529)
T PRK15134        202 LQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCVEQNRAATLF  245 (529)
T ss_pred             HHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            9875 89999999996 6788999999999999999999987653

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.84  E-value=9.6e-21  Score=190.37  Aligned_cols=108  Identities=31%  Similarity=0.459  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~   85 (546)
                      +++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.
T Consensus       111 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~  185 (257)
T PRK11247        111 RDAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF  185 (257)
T ss_pred             HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            456788999999988777754     57999999999999999999999999999999999999999999999975 589


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS  120 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~  120 (546)
                      |||+++|++ .++.+++|++++|++|++++.|+.+
T Consensus       186 tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        186 TVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence            999999996 6788999999999999999888654

>PRK10908 cell division protein FtsE; Provisional

Probab=99.84  E-value=1.2e-20  Score=185.32  Aligned_cols=104  Identities=31%  Similarity=0.402  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..+.++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       113 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  187 (222)
T PRK10908        113 DIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG  187 (222)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC
Confidence            34456788999999988777644     5699999999999999999999999999999999999999999999998788


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTV  114 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v  114 (546)
                      .|+|+++|++ +++.+.+|++++|++|+++
T Consensus       188 ~tiii~sH~~-~~~~~~~d~i~~l~~G~i~  216 (222)
T PRK10908        188 VTVLMATHDI-GLISRRSYRMLTLSDGHLH  216 (222)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence            9999999996 6788999999999999975

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.84  E-value=1.4e-20  Score=187.00  Aligned_cols=113  Identities=28%  Similarity=0.443  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      +..+.++++++.+++.+..|+..     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~  180 (237)
T TIGR00968       106 KIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV  180 (237)
T ss_pred             HHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            34567789999999988777755     469999999999999999999999999999999999999999999999875 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |+|||+++|++ .++.+++|++++|++|+++..|+.++..
T Consensus       181 ~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~  219 (237)
T TIGR00968       181 HVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY  219 (237)
T ss_pred             CCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence            89999999996 6789999999999999999999988653

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.84  E-value=1.1e-20  Score=186.10  Aligned_cols=101  Identities=32%  Similarity=0.488  Sum_probs=91.2

Q ss_pred             HHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q 009033           11 ERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI   88 (546)
Q Consensus        11 ~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~tvi   88 (546)
                      +++++.++|. +..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||
T Consensus       126 ~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii  200 (228)
T cd03257         126 LLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLL  200 (228)
T ss_pred             HHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence            5788999995 5666644     569999999999999999999999999999999999999999999999875 89999


Q ss_pred             EEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           89 ASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        89 ~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      +++|++ .++.+++|++++|++|+++..|
T Consensus       201 ~~sH~~-~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         201 FITHDL-GVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             EEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence            999996 6788899999999999998765

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.1e-20  Score=207.96  Aligned_cols=112  Identities=21%  Similarity=0.390  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||.+..|+.+     .+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       121 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g  195 (510)
T PRK09700        121 EMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG  195 (510)
T ss_pred             HHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            44567889999999998888755     4699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      .|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus       196 ~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~  232 (510)
T PRK09700        196 TAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSDV  232 (510)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhhC
Confidence            9999999995 788899999999999999999998764

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.5e-20  Score=189.32  Aligned_cols=111  Identities=28%  Similarity=0.372  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+++++++++.+++.    +..++     .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus       128 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  202 (260)
T PRK10744        128 EMDERVEWALTKAALWNEVKDKLHQ-----SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL  202 (260)
T ss_pred             HHHHHHHHHHHHcCCChhhHHHHhc-----CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            3456788999999984    33444     44579999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++ +.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       203 ~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  242 (260)
T PRK10744        203 KQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDTI  242 (260)
T ss_pred             hc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            64 78999999996 678899999999999999999998765

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.84  E-value=2e-20  Score=186.80  Aligned_cols=112  Identities=28%  Similarity=0.368  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+.+++.++.++|. +..++.+.    +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~  196 (248)
T PRK09580        121 QDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKR  196 (248)
T ss_pred             HHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence            45677888989985 45555332    36999999999999999999999999999999999999999999999988889


Q ss_pred             EEEEEecCCchHHHhh-cCeEEEEeCCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~-~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |||+++|++ ..+... +|++++|++|++++.|+++.+.
T Consensus       197 tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g~~~~~~  234 (248)
T PRK09580        197 SFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLVK  234 (248)
T ss_pred             EEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence            999999996 566666 8999999999999999988553

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.84  E-value=9e-21  Score=193.53  Aligned_cols=120  Identities=27%  Similarity=0.403  Sum_probs=109.9

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++.++++.++++..|+.+-....  +.++++|||||||||.||++|+.+|++||.||||+.||..-+.+|+++|++|
T Consensus       126 ~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L  203 (534)
T COG4172         126 LSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL  203 (534)
T ss_pred             ccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence            46778889999999999998766554  3489999999999999999999999999999999999999999999999999


Q ss_pred             Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      .+ .|..++++||| ..-+-+++|||++|.+|+++..|+++++.
T Consensus       204 q~~~gMa~lfITHD-L~iVr~~ADrV~VM~~G~ivE~~~t~~lF  246 (534)
T COG4172         204 QAELGMAILFITHD-LGIVRKFADRVYVMQHGEIVETGTTETLF  246 (534)
T ss_pred             HHHhCcEEEEEecc-HHHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence            86 69999999999 57899999999999999999999998765

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=2.7e-20  Score=189.19  Aligned_cols=113  Identities=25%  Similarity=0.381  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++..++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       115 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~  189 (277)
T PRK13642        115 EEMIKRVDEALLAVNMLDFKTREP-----ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK  189 (277)
T ss_pred             HHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            344567889999999988877744     579999999999999999999999999999999999999999999999875


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       |.|||+++|++ .++. .+|++++|++|+++..|++++..
T Consensus       190 ~g~tiil~sH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~  228 (277)
T PRK13642        190 YQLTVLSITHDL-DEAA-SSDRILVMKAGEIIKEAAPSELF  228 (277)
T ss_pred             cCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence             99999999996 5565 69999999999999999988754

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1.3e-20  Score=189.16  Aligned_cols=111  Identities=29%  Similarity=0.398  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      .+.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ 
T Consensus       103 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~  177 (255)
T PRK11248        103 MQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE  177 (255)
T ss_pred             HHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence            344567889999999988777744     56999999999999999999999999999999999999999999999965 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecChh
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS  120 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~--~G~~v~~G~~~  120 (546)
                      +|+|||+++|++ .++.+++|++++|+  +|+++..++.+
T Consensus       178 ~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~  216 (255)
T PRK11248        178 TGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN  216 (255)
T ss_pred             cCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence            589999999996 68899999999998  59999887654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.84  E-value=1.3e-20  Score=207.92  Aligned_cols=116  Identities=26%  Similarity=0.359  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      ++.+++++++++.+||++..++.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ 
T Consensus       143 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~  217 (520)
T TIGR03269       143 KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA  217 (520)
T ss_pred             HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            345678899999999988877754     56999999999999999999999999999999999999999999999976 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF  125 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~  125 (546)
                      .|.|||+++|++ ..+.+++|++++|++|++++.|++++..+.
T Consensus       218 ~g~tviivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  259 (520)
T TIGR03269       218 SGISMVLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV  259 (520)
T ss_pred             cCcEEEEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence            589999999996 678899999999999999999998876554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=188.01  Aligned_cols=111  Identities=28%  Similarity=0.425  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +..++++++++.+||..    ..++     .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       121 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  195 (253)
T PRK14267        121 ELDERVEWALKKAALWDEVKDRLND-----YPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL  195 (253)
T ss_pred             HHHHHHHHHHHHcCCccchhhhhcc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            34456788999999853    3343     45679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++ ++|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       196 ~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (253)
T PRK14267        196 KK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKV  235 (253)
T ss_pred             hh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            75 69999999996 678899999999999999999998765

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=186.81  Aligned_cols=110  Identities=31%  Similarity=0.385  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG   84 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g   84 (546)
                      .++++++++.+||+ +..++     .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|
T Consensus       108 ~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g  182 (241)
T PRK14250        108 NVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN  182 (241)
T ss_pred             HHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence            35678899999996 45665     3457999999999999999999999999999999999999999999999987 49


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      +|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       183 ~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (241)
T PRK14250        183 LTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF  219 (241)
T ss_pred             CEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            9999999996 678899999999999999999988764

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.84  E-value=2e-20  Score=201.58  Aligned_cols=116  Identities=16%  Similarity=0.262  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus       118 ~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~  192 (549)
T PRK13545        118 EKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ  192 (549)
T ss_pred             HHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence            344556788999999988887755     569999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF  125 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~  125 (546)
                      |+|||+++|++ .++.++||++++|++|+++..|+++++..-
T Consensus       193 G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~  233 (549)
T PRK13545        193 GKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDH  233 (549)
T ss_pred             CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence            99999999996 688899999999999999999999887543

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.84  E-value=4.9e-21  Score=197.52  Aligned_cols=114  Identities=29%  Similarity=0.465  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++++++|++.++.++|++.+++     ++.+|||||||||++||+|+.+|++|+||||.|.||..-+.++...|+++.+
T Consensus       110 ~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~  184 (352)
T COG3842         110 KAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR  184 (352)
T ss_pred             HHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence            45688899999999999998888     5568999999999999999999999999999999999999999999999986


Q ss_pred             -CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           83 -DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        83 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                       .|.|.|++|||. +|.+.++|||.+|++|++.-.|+++++
T Consensus       185 ~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei  224 (352)
T COG3842         185 ELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI  224 (352)
T ss_pred             hcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence             599999999995 899999999999999999999999986

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.84  E-value=1.1e-20  Score=206.90  Aligned_cols=111  Identities=23%  Similarity=0.352  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      +++++++++.+||++..|+.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.|
T Consensus       113 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t  187 (490)
T PRK10938        113 PARCEQLAQQFGITALLDRRF-----KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT  187 (490)
T ss_pred             HHHHHHHHHHcCCHhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence            467889999999998888865     469999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ||+++|++ .++.+.+|++++|++|+++..|++++..
T Consensus       188 vii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~  223 (490)
T PRK10938        188 LVLVLNRF-DEIPDFVQFAGVLADCTLAETGEREEIL  223 (490)
T ss_pred             EEEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999996 7889999999999999999999987653

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.84  E-value=1.8e-20  Score=189.52  Aligned_cols=112  Identities=24%  Similarity=0.335  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +..++++++++.+|+. +..++.     ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       126 ~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~  200 (268)
T PRK10419        126 ERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ  200 (268)
T ss_pred             HHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH
Confidence            3455788999999996 466664     4569999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                       |.|+|+++|++ .++.+++|++++|++|++++.|++++.
T Consensus       201 ~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~  239 (268)
T PRK10419        201 FGTACLFITHDL-RLVERFCQRVMVMDNGQIVETQPVGDK  239 (268)
T ss_pred             cCcEEEEEECCH-HHHHHhCCEEEEEECCEEeeeCChhhc
Confidence             89999999996 788889999999999999999998764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1.2e-20  Score=207.32  Aligned_cols=112  Identities=24%  Similarity=0.396  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +.+++++++++.+||. +..|+.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       380 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~  454 (506)
T PRK13549        380 AELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ  454 (506)
T ss_pred             HHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC
Confidence            3446788999999996 5677755     469999999999999999999999999999999999999999999999988


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |+|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus       455 g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        455 GVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEeccccC
Confidence            99999999996 789999999999999999999977653

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.84  E-value=1.5e-20  Score=184.44  Aligned_cols=103  Identities=26%  Similarity=0.408  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +..+++.++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus       117 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~  191 (221)
T TIGR02211       117 EAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL  191 (221)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence            33567788999999988777754     56999999999999999999999999999999999999999999999986 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTV  114 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v  114 (546)
                      |.|||+++|++ .++ +.+|++++|++|+++
T Consensus       192 ~~tii~~tH~~-~~~-~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       192 NTSFLVVTHDL-ELA-KKLDRVLEMKDGQLF  220 (221)
T ss_pred             CCEEEEEeCCH-HHH-hhcCEEEEEeCCEec
Confidence            89999999996 456 457999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.84  E-value=1.4e-20  Score=206.70  Aligned_cols=112  Identities=22%  Similarity=0.396  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||.+..|+.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       117 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~  191 (501)
T PRK10762        117 KMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG  191 (501)
T ss_pred             HHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC
Confidence            345678899999999988887654     699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      .|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       192 ~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (501)
T PRK10762        192 RGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL  228 (501)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence            9999999996 788999999999999999999987654

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.84  E-value=1.9e-20  Score=189.78  Aligned_cols=111  Identities=31%  Similarity=0.431  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHH
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQT   76 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~   76 (546)
                      .+++++++++.+||.+..++.+     ..|||||||||+||++|+         .+|++|+|||||+|||+.++..+.+.
T Consensus       122 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~  196 (272)
T PRK13547        122 DGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT  196 (272)
T ss_pred             HHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHH
Confidence            4466888999999987777644     569999999999999999         59999999999999999999999999


Q ss_pred             HHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           77 LRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        77 L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |++++++ |.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       197 l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  242 (272)
T PRK13547        197 VRRLARDWNLGVLAIVHDP-NLAARHADRIAMLADGAIVAHGAPADV  242 (272)
T ss_pred             HHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence            9999875 89999999996 678899999999999999999998765

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.7e-20  Score=187.59  Aligned_cols=117  Identities=30%  Similarity=0.445  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +.++++.++++.+++.+..+... +..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus       122 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~  200 (261)
T PRK14258        122 EIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS  200 (261)
T ss_pred             HHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhC
Confidence            33566788999999854221111 124567999999999999999999999999999999999999999999999975 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeC-----CeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~-----G~~v~~G~~~~~~  123 (546)
                      |.|||+++|++ .++.+++|++++|++     |+++++|+++++.
T Consensus       201 ~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~  244 (261)
T PRK14258        201 ELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF  244 (261)
T ss_pred             CCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence            89999999996 789999999999999     9999999998763

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.6e-20  Score=211.00  Aligned_cols=114  Identities=26%  Similarity=0.341  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            4 SEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++.+++++++++.+||. +..++.     +++|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++
T Consensus       437 ~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~  511 (623)
T PRK10261        437 KAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR  511 (623)
T ss_pred             HHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            34557788999999996 566764     457999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |.|||++||++ ..+.+++|+|++|++|++++.|+++++.
T Consensus       512 ~~g~tvi~isHdl-~~v~~~~dri~vl~~G~iv~~g~~~~i~  552 (623)
T PRK10261        512 DFGIAYLFISHDM-AVVERISHRVAVMYLGQIVEIGPRRAVF  552 (623)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            5 89999999995 7899999999999999999999998764

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.4e-20  Score=187.57  Aligned_cols=111  Identities=24%  Similarity=0.385  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+++++++++.+|+.+    ..++     .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       127 ~~~~~~~~~l~~~~l~~~~~~~l~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  201 (259)
T PRK14274        127 KLQEIVEKSLKDVALWDEVKDRLHT-----QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL  201 (259)
T ss_pred             HHHHHHHHHHHHcCCchhhhhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            34556788899999853    2333     45679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++ ++|+|+++|++ +++.+++|++++|++|+++..|++++.
T Consensus       202 ~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  241 (259)
T PRK14274        202 KE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNKM  241 (259)
T ss_pred             hc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            75 78999999996 688899999999999999999998875

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.84  E-value=1.8e-20  Score=184.98  Aligned_cols=116  Identities=30%  Similarity=0.400  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++.++|+.+||.. ..++     +++++|||||||+.|||+|+.+|+++++|||||.||...+.+++++|+++.
T Consensus        82 ~~~~~~~v~elL~~Vgl~~~~~~r-----yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq  156 (268)
T COG4608          82 KEERRERVLELLEKVGLPEEFLYR-----YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ  156 (268)
T ss_pred             hhHHHHHHHHHHHHhCCCHHHhhc-----CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH
Confidence            4567788999999999864 5555     788999999999999999999999999999999999999999999999998


Q ss_pred             h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      + .|.|.++++|| .+.+..++||+.+|..|++|..|+.+++..
T Consensus       157 ~~~~lt~lFIsHD-L~vv~~isdri~VMy~G~iVE~g~~~~~~~  199 (268)
T COG4608         157 EELGLTYLFISHD-LSVVRYISDRIAVMYLGKIVEIGPTEEVFS  199 (268)
T ss_pred             HHhCCeEEEEEEE-HHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence            7 59999999999 588999999999999999999999998653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1.5e-20  Score=206.57  Aligned_cols=112  Identities=21%  Similarity=0.301  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||.+..++.+     .+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~  193 (506)
T PRK13549        119 AMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG  193 (506)
T ss_pred             HHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence            34567899999999988888755     4699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      .|||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus       194 ~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~  230 (506)
T PRK13549        194 IACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM  230 (506)
T ss_pred             CEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence            9999999995 788899999999999999999988764

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.9e-20  Score=187.96  Aligned_cols=111  Identities=27%  Similarity=0.410  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+++++++++.+||.+    ..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus       135 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l  209 (267)
T PRK14235        135 ELDEIVETSLRKAGLWEEVKDRLHE-----PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL  209 (267)
T ss_pred             HHHHHHHHHHHHcCCchhhhHHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            34566788999999964    2333     45679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++ +.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       210 ~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~  249 (267)
T PRK14235        210 RQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEKM  249 (267)
T ss_pred             hc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            76 68999999995 678899999999999999999988764

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.8e-20  Score=186.25  Aligned_cols=109  Identities=27%  Similarity=0.392  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++++++++.+++.+    ..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       122 ~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  196 (252)
T PRK14239        122 DEAVEKSLKGASIWDEVKDRLHD-----SALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD  196 (252)
T ss_pred             HHHHHHHHHHcCCchhHHHHHhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh
Confidence            456777888988743    2333     4567999999999999999999999999999999999999999999999975


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                       ++|||+++|++ +++.+.+|++++|++|++++.|+.+++
T Consensus       197 -~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T PRK14239        197 -DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQM  234 (252)
T ss_pred             -CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence             68999999996 688899999999999999999998875

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.2e-20  Score=185.78  Aligned_cols=111  Identities=24%  Similarity=0.375  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+++++++++.+||.    +..++     .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~  193 (251)
T PRK14270        119 ELDKIVEWALKKAALWDEVKDDLKK-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL  193 (251)
T ss_pred             HHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            3456678899999884    23444     45679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++ +.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       194 ~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (251)
T PRK14270        194 KK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKI  233 (251)
T ss_pred             Hh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence            76 58999999996 688999999999999999999998875

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.5e-20  Score=187.33  Aligned_cols=115  Identities=23%  Similarity=0.350  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.++|.+..+... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus       135 ~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~  212 (267)
T PRK14237        135 VLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-N  212 (267)
T ss_pred             HHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C
Confidence            34566788899999864322222 225568999999999999999999999999999999999999999999999964 7


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      .|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       213 ~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  249 (267)
T PRK14237        213 YTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKTRNI  249 (267)
T ss_pred             CEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            8999999996 678899999999999999999998865

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.7e-20  Score=185.44  Aligned_cols=111  Identities=26%  Similarity=0.410  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+++++++++.+|+.+    ..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus       120 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~  194 (252)
T PRK14256        120 EADEIVESSLKRVALWDEVKDRLKS-----NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL  194 (252)
T ss_pred             HHHHHHHHHHHHcCCchhhhHHhhC-----CcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            34566888999999864    2333     45679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++ +.|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       195 ~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14256        195 KE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKI  234 (252)
T ss_pred             Hh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            76 58999999995 688899999999999999999998764

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.4e-20  Score=186.43  Aligned_cols=112  Identities=27%  Similarity=0.447  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+++++++++.+||.    +..++     .+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus       120 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  194 (258)
T PRK14241        120 DLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL  194 (258)
T ss_pred             HHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            4456778899999984    33444     44679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEe------CCeEEEecChhHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLS------GGKTVYFGETSAAF  123 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~------~G~~v~~G~~~~~~  123 (546)
                      ++ ++|||+++|++ .++.+++|++++|+      +|++++.|++++..
T Consensus       195 ~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~  241 (258)
T PRK14241        195 KQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF  241 (258)
T ss_pred             hc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence            65 68999999996 67889999999997      79999999988653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.9e-20  Score=184.70  Aligned_cols=110  Identities=28%  Similarity=0.443  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            6 KRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      .+++++++++.++|.+    ..++     .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus       115 ~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~  189 (246)
T PRK14269        115 EEALVVDCLQKVGLFEEVKDKLKQ-----NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS  189 (246)
T ss_pred             HHHHHHHHHHHcCCChhhhHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence            3456788999999953    2333     446799999999999999999999999999999999999999999999997


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      + |+|+|+++|++ +++.+.+|++++|++|+++..|++++.
T Consensus       190 ~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  228 (246)
T PRK14269        190 H-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEF  228 (246)
T ss_pred             C-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHH
Confidence            5 89999999995 778899999999999999999998764

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.83  E-value=2.4e-20  Score=206.18  Aligned_cols=114  Identities=27%  Similarity=0.446  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            4 SEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      .+.+++++++++.+||. +..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus       399 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  473 (529)
T PRK15134        399 AQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ  473 (529)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHH
Confidence            34456788999999997 4677744     56999999999999999999999999999999999999999999999987


Q ss_pred             C-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 D-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + |.|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       474 ~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~  514 (529)
T PRK15134        474 KHQLAYLFISHDL-HVVRALCHQVIVLRQGEVVEQGDCERVF  514 (529)
T ss_pred             hhCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence            5 89999999995 7888999999999999999999987653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.83  E-value=2.5e-20  Score=205.08  Aligned_cols=111  Identities=23%  Similarity=0.328  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++++++++.+||.+..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus       117 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~  191 (510)
T PRK15439        117 SMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV  191 (510)
T ss_pred             HHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence            3567889999999998888765     46999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus       192 tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (510)
T PRK15439        192 GIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL  227 (510)
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence            999999995 788899999999999999999998765

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.5e-20  Score=185.36  Aligned_cols=115  Identities=26%  Similarity=0.393  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .++.+++.++.+|+.+..+.. .+..+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++
T Consensus       119 ~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~  196 (250)
T PRK14262        119 LDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NY  196 (250)
T ss_pred             HHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-Cc
Confidence            345677888999985421111 1224567999999999999999999999999999999999999999999999975 78


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |||+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus       197 tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14262        197 TIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREIV  233 (250)
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            999999996 6788999999999999999999987654

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.9e-20  Score=184.88  Aligned_cols=114  Identities=28%  Similarity=0.420  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .++++++.++.+++.+...... +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++
T Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~  195 (249)
T PRK14253        118 LDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NY  195 (249)
T ss_pred             HHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence            3456777888888753211111 124467999999999999999999999999999999999999999999999976 58


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+.+|++++|++|+++..|++++.
T Consensus       196 tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (249)
T PRK14253        196 TIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI  231 (249)
T ss_pred             eEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999996 788999999999999999999988764

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.83  E-value=5.6e-20  Score=185.50  Aligned_cols=114  Identities=19%  Similarity=0.295  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..+.++++++.++|.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g  193 (264)
T PRK13546        119 EIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQN  193 (264)
T ss_pred             HHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCC
Confidence            34456677888899988777754     5699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .|||+++|++ .++.+++|++++|++|+++..|+.+++.+
T Consensus       194 ~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (264)
T PRK13546        194 KTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDVLP  232 (264)
T ss_pred             CEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence            9999999995 78889999999999999999999887654

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.83  E-value=3.4e-20  Score=182.89  Aligned_cols=104  Identities=31%  Similarity=0.417  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      +.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ 
T Consensus       122 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  196 (228)
T PRK10584        122 QSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH  196 (228)
T ss_pred             HHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            44567889999999988777754     569999999999999999999999999999999999999999999999764 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY  115 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~  115 (546)
                      |.|||+++|++ .++ +.+|++++|++|+++.
T Consensus       197 ~~tii~~sH~~-~~~-~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        197 GTTLILVTHDL-QLA-ARCDRRLRLVNGQLQE  226 (228)
T ss_pred             CCEEEEEecCH-HHH-HhCCEEEEEECCEEEe
Confidence            89999999996 456 5599999999999864

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.83  E-value=2.3e-20  Score=204.90  Aligned_cols=112  Identities=26%  Similarity=0.407  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +.+++++++++.+||. +..|+.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       370 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  444 (501)
T PRK10762        370 DEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE  444 (501)
T ss_pred             HHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC
Confidence            3456788999999995 6677755     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |.|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       445 g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        445 GLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             CCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence            99999999996 789999999999999999999987654

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.1e-20  Score=186.93  Aligned_cols=109  Identities=26%  Similarity=0.434  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++.+.+.++.+++.    +..++     .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       138 ~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  212 (268)
T PRK14248        138 DEIVEESLTKAALWDEVKDRLHS-----SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE  212 (268)
T ss_pred             HHHHHHHHHHcCCCcchHHHHhc-----CcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc
Confidence            45567788888884    23344     4457999999999999999999999999999999999999999999999975


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                       +.|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus       213 -~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~  250 (268)
T PRK14248        213 -EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTEQI  250 (268)
T ss_pred             -CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence             68999999996 678899999999999999999998765

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.83  E-value=2.8e-20  Score=183.64  Aligned_cols=109  Identities=25%  Similarity=0.405  Sum_probs=97.0

Q ss_pred             HHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009033            8 TLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR   85 (546)
Q Consensus         8 ~~v~~~l~~lg-L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~   85 (546)
                      +.++++++.++ +.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|++++++ |+
T Consensus       109 ~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~  183 (230)
T TIGR03410       109 KIPDEIYELFPVLKEMLGRRG-----GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM  183 (230)
T ss_pred             HHHHHHHHHHHhHHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCc
Confidence            34577788876 566666644     569999999999999999999999999999999999999999999999874 89


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+++|++++|++|+++..|+.+++
T Consensus       184 tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       184 AILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            999999995 688889999999999999999998765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.83  E-value=3.7e-20  Score=204.22  Aligned_cols=113  Identities=29%  Similarity=0.434  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHcCCcc-----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            6 KRTLVERTIIEMGLQD-----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~-----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      .+++++++++.+||.+     ..++.     +..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus       399 ~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l  473 (520)
T TIGR03269       399 ARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA  473 (520)
T ss_pred             HHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            4567888999999975     35554     4579999999999999999999999999999999999999999999999


Q ss_pred             HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +++ |.|||+++|++ .++.+++|++++|++|+++..|+++++.+
T Consensus       474 ~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  517 (520)
T TIGR03269       474 REEMEQTFIIVSHDM-DFVLDVCDRAALMRDGKIVKIGDPEEIVE  517 (520)
T ss_pred             HHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            864 89999999996 78899999999999999999999887643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.1e-20  Score=203.90  Aligned_cols=109  Identities=20%  Similarity=0.317  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      ++.++++++.+||. +..|+.++     .|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++++|.
T Consensus       373 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~  447 (501)
T PRK11288        373 AENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGV  447 (501)
T ss_pred             HHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCC
Confidence            45688999999994 67788665     6999999999999999999999999999999999999999999999998899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~  121 (546)
                      |||+++|++ .++.+++|++++|++|++++.|++++
T Consensus       448 tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~  482 (501)
T PRK11288        448 AVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQ  482 (501)
T ss_pred             EEEEECCCH-HHHHhhCCEEEEEECCEEEEEEcccc
Confidence            999999995 78999999999999999999998765

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.9e-20  Score=202.67  Aligned_cols=112  Identities=18%  Similarity=0.255  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..++++++++.+||.+..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|
T Consensus       110 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g  184 (491)
T PRK10982        110 KMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG  184 (491)
T ss_pred             HHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            34567889999999988777755     4699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      .|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       185 ~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        185 CGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             CEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence            9999999995 788899999999999999999987664

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.2e-20  Score=204.24  Aligned_cols=107  Identities=22%  Similarity=0.401  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      +++++++++.+||. +..++.+     ..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++|.
T Consensus       386 ~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~  460 (510)
T PRK09700        386 QRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK  460 (510)
T ss_pred             HHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCC
Confidence            45678999999997 6778755     46999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET  119 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~  119 (546)
                      |||+++|++ .++.+++|++++|++|+++..++.
T Consensus       461 tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        461 VILMVSSEL-PEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             EEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecC
Confidence            999999996 789999999999999999988865

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.83  E-value=2.4e-20  Score=205.16  Aligned_cols=109  Identities=26%  Similarity=0.381  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      +++++++++.+||+ +..|+.+     +.|||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++|.
T Consensus       380 ~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~  454 (510)
T PRK15439        380 NAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV  454 (510)
T ss_pred             HHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCC
Confidence            45688999999997 6777755     46999999999999999999999999999999999999999999999998899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~  121 (546)
                      |||+++|++ .++.++||++++|++|+++..|++++
T Consensus       455 tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~  489 (510)
T PRK15439        455 AVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAA  489 (510)
T ss_pred             EEEEECCCH-HHHHHhCCEEEEEECCEEEEEEcccc
Confidence            999999996 78999999999999999999887764

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.8e-20  Score=186.86  Aligned_cols=113  Identities=28%  Similarity=0.420  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      ++.++++++.+++.+...+.. +..+..||||||||++||++|+++|++++|||||+|||+.++..+.+.|+++++ +.|
T Consensus       142 ~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~t  219 (272)
T PRK14236        142 DEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYT  219 (272)
T ss_pred             HHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCe
Confidence            456788899999863211111 124567999999999999999999999999999999999999999999999976 689


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ||+++|++ .++.+.+|++++|++|+++..|++++.
T Consensus       220 iiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  254 (272)
T PRK14236        220 IVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTL  254 (272)
T ss_pred             EEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHH
Confidence            99999996 678899999999999999999988764

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.83  E-value=3.4e-20  Score=176.47  Aligned_cols=101  Identities=38%  Similarity=0.562  Sum_probs=91.2

Q ss_pred             HHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q 009033           11 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIA   89 (546)
Q Consensus        11 ~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~tvi~   89 (546)
                      .++++.+||.+..++.     ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|+
T Consensus        79 ~q~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii  153 (180)
T cd03214          79 PQALELLGLAHLADRP-----FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM  153 (180)
T ss_pred             HHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            3478889998777664     4579999999999999999999999999999999999999999999999876 899999


Q ss_pred             EecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           90 SIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        90 ~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      ++|++ +++.+++|++++|++|++++.|
T Consensus       154 ~sh~~-~~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         154 VLHDL-NLAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             EeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence            99996 6788999999999999998654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3e-20  Score=208.88  Aligned_cols=115  Identities=28%  Similarity=0.408  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      +.+.+++++++++.+||.+   ..++     ++..|||||||||.||++|+.+|++|+|||||+|||+.++.++.++|++
T Consensus       139 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~  213 (623)
T PRK10261        139 REEAMVEAKRMLDQVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKV  213 (623)
T ss_pred             HHHHHHHHHHHHHHCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHH
Confidence            3455678899999999963   3455     4567999999999999999999999999999999999999999999999


Q ss_pred             HHhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           80 LSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        80 l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++++ |.|||+++|++ .++.+++|+|++|++|+++..|+++++.
T Consensus       214 l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~~~  257 (623)
T PRK10261        214 LQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQIF  257 (623)
T ss_pred             HHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence            9864 99999999995 7888999999999999999999987753

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=7.7e-20  Score=182.88  Aligned_cols=111  Identities=26%  Similarity=0.466  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+++++++++.+++.+    ..++     .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus       118 ~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14240        118 KLDEIVEKSLKGAALWDEVKDRLKK-----SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL  192 (250)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHhc-----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            34567788888888742    3344     44679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++ |+|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       193 ~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (250)
T PRK14240        193 KK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDL  232 (250)
T ss_pred             hc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            64 79999999995 678999999999999999999988764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=7.3e-20  Score=183.22  Aligned_cols=110  Identities=29%  Similarity=0.429  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      .+.+++.++.+++.    +..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       122 ~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~  196 (252)
T PRK14272        122 MEVAERSLRGAALWDEVKDRLKT-----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK  196 (252)
T ss_pred             HHHHHHHHHHcCcchhhhhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence            45566677777763    33444     3467999999999999999999999999999999999999999999999975


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       ++|+|+++|++ .++.+.+|++++|++|++++.|+++++.
T Consensus       197 -~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14272        197 -VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGPTDQLF  235 (252)
T ss_pred             -CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence             69999999996 6788899999999999999999988753

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=6.1e-20  Score=190.78  Aligned_cols=113  Identities=27%  Similarity=0.398  Sum_probs=99.0

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      +.++++++..+|.+..++.++. ....||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+
T Consensus       200 ~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Ti  277 (329)
T PRK14257        200 KIVEKSLKSAALWDEVKDDLDK-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSI  277 (329)
T ss_pred             HHHHHHHHHcCCcchhhhhhhC-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEE
Confidence            4467788888885433444443 5678999999999999999999999999999999999999999999999976 6999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |+++|++ ..+.+.+|+|++|++|+++..|+++++.
T Consensus       278 i~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~l~  312 (329)
T PRK14257        278 IIVTHSM-AQAQRISDETVFFYQGWIEEAGETKTIF  312 (329)
T ss_pred             EEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999995 7788899999999999999999999864

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=6.2e-20  Score=187.41  Aligned_cols=109  Identities=27%  Similarity=0.413  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++++.++++.+|+.    +..++     .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       156 ~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~  230 (286)
T PRK14275        156 EEIVEKSLRKAALWDEVSDRLDK-----NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG  230 (286)
T ss_pred             HHHHHHHHHHhCCccchhhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence            45677888888874    33444     4467999999999999999999999999999999999999999999999976


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                       ++|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       231 -~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g~~~~~  268 (286)
T PRK14275        231 -SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHAPTAQL  268 (286)
T ss_pred             -CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence             58999999996 678899999999999999999998765

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.83  E-value=4.5e-20  Score=224.39  Aligned_cols=119  Identities=30%  Similarity=0.469  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.+++++++++.+||++.+|+.++     +|||||||||+||++|+.+|+||+|||||+|||+.++.++.+.|+++++
T Consensus      2044 ~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~ 2118 (2272)
T TIGR01257      2044 AEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118 (2272)
T ss_pred             HHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence            34456778899999999999988664     6999999999999999999999999999999999999999999999988


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFA  127 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~  127 (546)
                      +|+|||+|+|++ +++.++|||+++|++|+++..|+++++.+.|.
T Consensus      2119 ~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257      2119 EGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred             CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence            899999999995 89999999999999999999999999887764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.82  E-value=5.2e-20  Score=182.57  Aligned_cols=90  Identities=33%  Similarity=0.553  Sum_probs=83.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      .++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++ ..+|++++|++
T Consensus       135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~-~~~d~v~~l~~  211 (237)
T cd03252         135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRL-STV-KNADRIIVMEK  211 (237)
T ss_pred             CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHH-HhCCEEEEEEC
Confidence            4567999999999999999999999999999999999999999999999974 89999999997 556 56999999999


Q ss_pred             CeEEEecChhHHH
Q 009033          111 GKTVYFGETSAAF  123 (546)
Q Consensus       111 G~~v~~G~~~~~~  123 (546)
                      |++++.|+++++.
T Consensus       212 G~i~~~~~~~~~~  224 (237)
T cd03252         212 GRIVEQGSHDELL  224 (237)
T ss_pred             CEEEEEcCHHHHH
Confidence            9999999987654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=7.1e-20  Score=184.26  Aligned_cols=111  Identities=28%  Similarity=0.430  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +..++++++++.+|+.    +..++     .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       122 ~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  196 (259)
T PRK14260        122 DLDEIVESALKGAALWQEVKDKLNK-----SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL  196 (259)
T ss_pred             HHHHHHHHHHHHcCCcchhhhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            3345678889999884    33444     45679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEe-----CCeEEEecChhHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLS-----GGKTVYFGETSAA  122 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~-----~G~~v~~G~~~~~  122 (546)
                      ++ ++|||+++|++ .++.+++|++++|+     +|+++.+|++++.
T Consensus       197 ~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~  241 (259)
T PRK14260        197 RS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFGVTTQI  241 (259)
T ss_pred             hc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence            76 58999999996 78999999999998     5999999999875

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=7.6e-20  Score=184.33  Aligned_cols=115  Identities=27%  Similarity=0.341  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++++++++.++|.+..+...+ ..++.||||||||++||++|+++|++|+|||||+|||+.++.++.+.|+++++ ++
T Consensus       122 ~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~  199 (261)
T PRK14263        122 LGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DY  199 (261)
T ss_pred             HHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence            34678889999998643322222 25567999999999999999999999999999999999999999999999964 79


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEe--------CCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLS--------GGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~--------~G~~v~~G~~~~~~  123 (546)
                      |+|+++|++ .++.+++|++++|+        +|+++..|+++++.
T Consensus       200 tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~  244 (261)
T PRK14263        200 TIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF  244 (261)
T ss_pred             eEEEEeCCH-HHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence            999999996 67889999999996        89999999988653

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=8.7e-20  Score=182.69  Aligned_cols=113  Identities=23%  Similarity=0.366  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      ++.++++++.++|.+...... +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. +|.|
T Consensus       121 ~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~t  198 (251)
T PRK14249        121 DEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYT  198 (251)
T ss_pred             HHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCE
Confidence            455677788888753211111 22456799999999999999999999999999999999999999999999995 5899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus       199 ilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14249        199 IAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEI  233 (251)
T ss_pred             EEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence            99999995 788899999999999999999998765

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=9.9e-20  Score=184.96  Aligned_cols=116  Identities=29%  Similarity=0.414  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.++++.++++.+||.+..++... ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus       135 ~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~  212 (276)
T PRK14271        135 EFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-R  212 (276)
T ss_pred             HHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-C
Confidence            334556788899999753322221 24567999999999999999999999999999999999999999999999976 4


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      .|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       213 ~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~  250 (276)
T PRK14271        213 LTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQLF  250 (276)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            8999999995 7889999999999999999999988753

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.82  E-value=5.5e-20  Score=184.30  Aligned_cols=108  Identities=26%  Similarity=0.365  Sum_probs=97.8

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRT   86 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~t   86 (546)
                      +++.++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|
T Consensus        99 ~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~t  173 (251)
T PRK09544         99 EDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA  173 (251)
T ss_pred             HHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence            45788999999998887754     569999999999999999999999999999999999999999999999875 899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ||+++|++ .++.+.+|++++|++ +++..|+++++
T Consensus       174 iiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~  207 (251)
T PRK09544        174 VLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVV  207 (251)
T ss_pred             EEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence            99999996 788899999999965 78999988765

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=8.3e-20  Score=182.77  Aligned_cols=109  Identities=28%  Similarity=0.407  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++.++++++.+++..    ..++     .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~  195 (251)
T PRK14251        121 DQRVEESLKQAAIWKETKDNLDR-----NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH  195 (251)
T ss_pred             HHHHHHHHHHcCCCcchHHHhcc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc
Confidence            456788899999842    2333     4567999999999999999999999999999999999999999999999965


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                       +.|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       196 -~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14251        196 -QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGPTEEM  233 (251)
T ss_pred             -CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence             68999999996 678899999999999999999988765

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.82  E-value=6.6e-20  Score=201.31  Aligned_cols=111  Identities=23%  Similarity=0.325  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +.+++++++++.+||.+.. ++.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       116 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~  190 (500)
T TIGR02633       116 AMYLRAKNLLRELQLDADNVTRPV-----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH  190 (500)
T ss_pred             HHHHHHHHHHHHcCCCCCcccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            3456788999999998654 4434     569999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~  121 (546)
                      |.|||+++|++ .++.+++|++++|++|+++..|++++
T Consensus       191 g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (500)
T TIGR02633       191 GVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST  227 (500)
T ss_pred             CCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence            99999999995 78889999999999999999988764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.82  E-value=6.8e-20  Score=173.32  Aligned_cols=113  Identities=32%  Similarity=0.476  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLR   78 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~------~P~il~LDEPtsgLD~~~~~~v~~~L~   78 (546)
                      +..+++++.+...++.+.+.+-     .+.|||||||||.+||.|++      ++++||||||||.||...+..++++.+
T Consensus       111 e~~~i~~~ala~~d~~~la~R~-----y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR  185 (259)
T COG4559         111 EDERIAAQALAATDLSGLAGRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR  185 (259)
T ss_pred             hhHHHHHHHHHHcChhhhhccc-----hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence            4556788999999999998774     36799999999999999975      446999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        79 ~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +++++|..|+++.||. .-.-.++|||++|++||++..|+++++.
T Consensus       186 ~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~~vl  229 (259)
T COG4559         186 QLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQDVL  229 (259)
T ss_pred             HHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence            9999999999999995 6788999999999999999999999876

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=9.5e-20  Score=184.42  Aligned_cols=110  Identities=27%  Similarity=0.454  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++++++++.+++.    +..|+     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       128 ~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~  202 (269)
T PRK14259        128 DELVERSLRKAAVWDECKDKLNE-----SGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK  202 (269)
T ss_pred             HHHHHHHHHHhCCcchhhhhhCC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence            45667788888874    23344     4567999999999999999999999999999999999999999999999965


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeC-----------CeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSG-----------GKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~-----------G~~v~~G~~~~~~  123 (546)
                       +.|||+++|++ .++.+++|++++|++           |+++++|+++++.
T Consensus       203 -~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~  252 (269)
T PRK14259        203 -NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF  252 (269)
T ss_pred             -CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence             68999999996 789999999999996           6789999988764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.82  E-value=7.7e-20  Score=200.74  Aligned_cols=109  Identities=26%  Similarity=0.408  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            6 KRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      .+++++++++.++|.+ ..|+.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|
T Consensus       379 ~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g  453 (500)
T TIGR02633       379 ELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG  453 (500)
T ss_pred             HHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCC
Confidence            4567889999999964 567755     4699999999999999999999999999999999999999999999999889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS  120 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~  120 (546)
                      .|||+++|++ .++.+++|++++|++|+++..++.+
T Consensus       454 ~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~  488 (500)
T TIGR02633       454 VAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFVNH  488 (500)
T ss_pred             CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence            9999999996 7899999999999999999877554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.2e-19  Score=181.77  Aligned_cols=114  Identities=25%  Similarity=0.362  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .++.++++++.++|.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++
T Consensus       122 ~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~  199 (253)
T PRK14261        122 LDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EY  199 (253)
T ss_pred             HHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-Cc
Confidence            3456778888888743111111 224567999999999999999999999999999999999999999999999976 58


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+.+|++++|++|+++..|++++.
T Consensus       200 tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14261        200 TVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQI  235 (253)
T ss_pred             eEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence            999999995 678899999999999999999998765

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.3e-19  Score=181.30  Aligned_cols=114  Identities=22%  Similarity=0.334  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++++++++.+||.+...... +..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+
T Consensus       119 ~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~  196 (250)
T PRK14266        119 IEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DY  196 (250)
T ss_pred             HHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence            4566788899999854221111 224567999999999999999999999999999999999999999999999965 79


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |||+++|++ .++.+.+|++++|++|++++.|++++.
T Consensus       197 tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14266        197 TIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQI  232 (250)
T ss_pred             eEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence            999999996 789999999999999999999998865

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.3e-19  Score=183.85  Aligned_cols=109  Identities=29%  Similarity=0.405  Sum_probs=95.4

Q ss_pred             HHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            8 TLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         8 ~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +.+++.++.+++.    +..++     .+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ 
T Consensus       136 ~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-  209 (274)
T PRK14265        136 ELVEDSLRRAAIWEEVKDKLKE-----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-  209 (274)
T ss_pred             HHHHHHHHHcccchhhHHHhcC-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-
Confidence            4456677887774    23333     4567999999999999999999999999999999999999999999999975 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEe---------CCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLS---------GGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~---------~G~~v~~G~~~~~~  123 (546)
                      ++|||+++|++ .++.+++|++++|+         +|+++..|+++++.
T Consensus       210 ~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~  257 (274)
T PRK14265        210 QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF  257 (274)
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence            68999999996 78999999999998         89999999998763

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.82  E-value=8.1e-20  Score=179.11  Aligned_cols=107  Identities=34%  Similarity=0.510  Sum_probs=91.8

Q ss_pred             HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQDCADTVIG------NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig------~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +.+++.++.+++.+..++...      ...+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       108 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  187 (220)
T cd03245         108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL  187 (220)
T ss_pred             HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence            456678888899877665431      11346899999999999999999999999999999999999999999999997


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      ++ .|||+++|++ ..+ +++|++++|++|++++.|
T Consensus       188 ~~-~tii~~sH~~-~~~-~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         188 GD-KTLIIITHRP-SLL-DLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             CC-CEEEEEeCCH-HHH-HhCCEEEEEeCCeEeecC
Confidence            65 8999999996 454 799999999999998764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.6e-19  Score=180.75  Aligned_cols=109  Identities=26%  Similarity=0.392  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++++.+.++.+++.    +..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       122 ~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  196 (252)
T PRK14255        122 DEAVETSLKQAAIWDEVKDHLHE-----SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD  196 (252)
T ss_pred             HHHHHHHHHHcCCccchhhHHhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh
Confidence            34566777888764    22333     4567999999999999999999999999999999999999999999999976


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                       +.|||+++|++ .++.+.+|++++|++|+++..|++.+.
T Consensus       197 -~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14255        197 -QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQM  234 (252)
T ss_pred             -CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence             48999999996 678899999999999999999988765

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.1e-19  Score=199.47  Aligned_cols=108  Identities=25%  Similarity=0.349  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g  190 (501)
T PRK11288        116 LLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEG  190 (501)
T ss_pred             HHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            44567889999999987777654     4699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE  118 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~  118 (546)
                      +|||+++|++ .++.+++|++++|++|+++..++
T Consensus       191 ~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        191 RVILYVSHRM-EEIFALCDAITVFKDGRYVATFD  223 (501)
T ss_pred             CEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecC
Confidence            9999999996 78889999999999999987665

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=4e-20  Score=181.13  Aligned_cols=112  Identities=28%  Similarity=0.431  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~   85 (546)
                      ....+++++.||++|..++     ++..|||||||||+|||||++.|++|++|||.+.||-....+++-.|++|+++ +.
T Consensus       106 ~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~I  180 (352)
T COG4148         106 RAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI  180 (352)
T ss_pred             hHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCC
Confidence            4567889999999999988     56789999999999999999999999999999999999999999999999975 78


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .|+.++|.+ .|+.+++|+|++|.+|++..+|+.+++.+
T Consensus       181 PIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~  218 (352)
T COG4148         181 PILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG  218 (352)
T ss_pred             CEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence            999999995 89999999999999999999999998653

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2.1e-19  Score=180.72  Aligned_cols=112  Identities=26%  Similarity=0.483  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+++++++++.+++.+    ..++     .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       125 ~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~  199 (257)
T PRK14246        125 EIKKIVEECLRKVGLWKEVYDRLNS-----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL  199 (257)
T ss_pred             HHHHHHHHHHHHcCCCccchhhhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            44567889999999964    3344     45679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ +.|||+++|++ .++.+++|++++|++|+++..|+.++..
T Consensus       200 ~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~  240 (257)
T PRK14246        200 KN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNEIF  240 (257)
T ss_pred             hc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            65 69999999995 6788999999999999999999988653

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=3.1e-20  Score=173.68  Aligned_cols=115  Identities=27%  Similarity=0.427  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      +|.+..+++.++.|+|++..|+.+     .+||||||||.-||+.++++.+.++||||.++||-.++.++|+.|+++++ 
T Consensus       110 ~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e  184 (252)
T COG4604         110 KEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE  184 (252)
T ss_pred             hHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHH
Confidence            456788999999999999999855     57999999999999999999999999999999999999999999999997 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      -|+||+++.||. ..+-.++|+|+-|++|+++..|+++++.+
T Consensus       185 l~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~  225 (252)
T COG4604         185 LGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ  225 (252)
T ss_pred             hCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence            499999999994 67888999999999999999999998753

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.7e-19  Score=182.09  Aligned_cols=110  Identities=27%  Similarity=0.411  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++++++++.+++.+    ..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       125 ~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~  199 (264)
T PRK14243        125 DELVERSLRQAALWDEVKDKLKQ-----SGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE  199 (264)
T ss_pred             HHHHHHHHHHhCchhhHHHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence            455677788888743    2333     4567999999999999999999999999999999999999999999999976


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEe---------CCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLS---------GGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~---------~G~~v~~G~~~~~~  123 (546)
                       ++|||+++|++ .++.+++|++++|+         +|+++..|+++++.
T Consensus       200 -~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~  247 (264)
T PRK14243        200 -QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF  247 (264)
T ss_pred             -CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence             58999999995 78999999999998         89999999988763

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=3e-18  Score=196.65  Aligned_cols=103  Identities=33%  Similarity=0.532  Sum_probs=93.2

Q ss_pred             CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009033           18 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE   97 (546)
Q Consensus        18 gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~   97 (546)
                      .|.+-.||.+|+..+. ||||||||++|||+|+.+|+||+||||||+||+.+...|.+.|++.. +|+|.|+++|+. +.
T Consensus       474 ~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRL-St  550 (1228)
T KOG0055|consen  474 KLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRL-ST  550 (1228)
T ss_pred             hhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeeh-hh
Confidence            4667789999985554 99999999999999999999999999999999999999999998876 478999999995 66


Q ss_pred             HHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           98 VFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        98 i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +.+ +|+|+++++|++|..|+++++.+
T Consensus       551 Irn-aD~I~v~~~G~IvE~G~h~ELi~  576 (1228)
T KOG0055|consen  551 IRN-ADKIAVMEEGKIVEQGTHDELIA  576 (1228)
T ss_pred             hhc-cCEEEEEECCEEEEecCHHHHHh
Confidence            766 99999999999999999999875

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=1.1e-19  Score=177.72  Aligned_cols=119  Identities=29%  Similarity=0.403  Sum_probs=109.3

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +.++-+++.+...+.|+|+...+..     +|.||-|||.|+.+|.+|+++|++|||||||-|||..++..+.+.|++..
T Consensus       129 pd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n  203 (325)
T COG4586         129 PDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYN  203 (325)
T ss_pred             CHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHH
Confidence            4566788999999999999877764     47799999999999999999999999999999999999999999999998


Q ss_pred             h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHH
Q 009033           82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF  126 (546)
Q Consensus        82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f  126 (546)
                      + ++.||+.|||. ..++.++||||+++++|+++|+|+.+++.+-|
T Consensus       204 ~~~~aTVllTTH~-~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f  248 (325)
T COG4586         204 EERQATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF  248 (325)
T ss_pred             HhhCceEEEEecc-hhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence            6 68999999999 58999999999999999999999999887654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.6e-19  Score=182.87  Aligned_cols=109  Identities=23%  Similarity=0.419  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++.+.+.++.+++.    +..++     .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       141 ~~~~~~~l~~~~~~~~l~~~~~~-----~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  215 (271)
T PRK14238        141 DEIVEKSLRGAAIWDELKDRLHD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK  215 (271)
T ss_pred             HHHHHHHHHHcCCcchHHHHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc
Confidence            34456667777542    23333     4567999999999999999999999999999999999999999999999976


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                       ++|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus       216 -~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~  253 (271)
T PRK14238        216 -DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKI  253 (271)
T ss_pred             -CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence             69999999996 678899999999999999999998764

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.81  E-value=2e-19  Score=177.50  Aligned_cols=100  Identities=28%  Similarity=0.379  Sum_probs=89.6

Q ss_pred             HHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033           11 ERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus        11 ~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      .+.++.+||.+ ..++     ++..||||||||++||++|+.+|  ++++|||||+|||+.++.++.+.|++++++|.|+
T Consensus       118 ~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~ti  192 (226)
T cd03270         118 LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV  192 (226)
T ss_pred             HHHHHHCCCCcccccC-----ccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            46789999975 4566     44679999999999999999998  5999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEE------eCCeEEEec
Q 009033           88 IASIHQPSSEVFELFDRLYLL------SGGKTVYFG  117 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G  117 (546)
                      |+++|++ +++ +.+|++++|      ++|+++++|
T Consensus       193 i~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         193 LVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             EEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEecC
Confidence            9999996 455 689999999      999999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.81  E-value=1.6e-19  Score=178.71  Aligned_cols=105  Identities=32%  Similarity=0.482  Sum_probs=89.6

Q ss_pred             HHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 009033           11 ERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI   88 (546)
Q Consensus        11 ~~~l~~l--gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi   88 (546)
                      ++.++.+  ++++..++     .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |.|||
T Consensus       118 ~~~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii  191 (234)
T cd03251         118 HEFIMELPEGYDTVIGE-----RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTF  191 (234)
T ss_pred             HHHHHhcccCcceeecc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEE
Confidence            3444444  45544444     4567999999999999999999999999999999999999999999999975 89999


Q ss_pred             EEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           89 ASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        89 ~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +++|++ .++.. +|++++|++|+++..|++++..
T Consensus       192 ~~sh~~-~~~~~-~d~v~~l~~G~i~~~~~~~~~~  224 (234)
T cd03251         192 VIAHRL-STIEN-ADRIVVLEDGKIVERGTHEELL  224 (234)
T ss_pred             EEecCH-HHHhh-CCEEEEecCCeEeeeCCHHHHH
Confidence            999997 56654 9999999999999999887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.81  E-value=1.6e-19  Score=177.18  Aligned_cols=103  Identities=32%  Similarity=0.537  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      ++..++++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ 
T Consensus       116 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~  190 (220)
T TIGR02982       116 QEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE  190 (220)
T ss_pred             HHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH
Confidence            344567899999999988777744     57999999999999999999999999999999999999999999999986 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      .|+|||+++|++ . +.+.+|++++|++|++
T Consensus       191 ~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       191 QGCTILIVTHDN-R-ILDVADRIVHMEDGKL  219 (220)
T ss_pred             cCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence            589999999996 3 5689999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.81  E-value=1.5e-19  Score=178.20  Aligned_cols=112  Identities=29%  Similarity=0.377  Sum_probs=91.2

Q ss_pred             HHHHHHHHcCCcccccccc------cCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            9 LVERTIIEMGLQDCADTVI------GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         9 ~v~~~l~~lgL~~~~~~~i------g~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      .+++.++.+++.+..+...      -+..++.||||||||+.||++|+.+|++++|||||+|||+.++..+++.|++++ 
T Consensus       108 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-  186 (229)
T cd03254         108 EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-  186 (229)
T ss_pred             HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence            3445555555544333211      112457899999999999999999999999999999999999999999999996 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +|+|||+++|++ .++ +.+|++++|++|++++.|+.++..
T Consensus       187 ~~~tii~~sh~~-~~~-~~~d~i~~l~~g~~~~~~~~~~~~  225 (229)
T cd03254         187 KGRTSIIIAHRL-STI-KNADKILVLDDGKIIEEGTHDELL  225 (229)
T ss_pred             CCCEEEEEecCH-HHH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence            589999999996 556 459999999999999999877653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.81  E-value=1.4e-19  Score=202.40  Aligned_cols=113  Identities=27%  Similarity=0.435  Sum_probs=97.0

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++++++++..++++       -.||.+|+. ...||||||||++|||+|+++|+||+||||||+||+.+..++.+.|+++
T Consensus       453 eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~  531 (588)
T PRK11174        453 EQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA  531 (588)
T ss_pred             HHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            45566666665543       458889864 4569999999999999999999999999999999999999999999998


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      . +++|+|+++|++  +..+.+|+|++|++|+++..|+.+++.+
T Consensus       532 ~-~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~  572 (588)
T PRK11174        532 S-RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ  572 (588)
T ss_pred             h-CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence            6 479999999997  3467799999999999999999887653

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.81  E-value=2.2e-19  Score=178.27  Aligned_cols=91  Identities=32%  Similarity=0.474  Sum_probs=83.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      .++.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++ +|+|||+++|++ +++. .+|++++|++
T Consensus       136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~-~~~~-~~d~v~~l~~  212 (238)
T cd03249         136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL-STIR-NADLIAVLQN  212 (238)
T ss_pred             CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHh-hCCEEEEEEC
Confidence            456799999999999999999999999999999999999999999999997 789999999996 5665 8999999999


Q ss_pred             CeEEEecChhHHHH
Q 009033          111 GKTVYFGETSAAFE  124 (546)
Q Consensus       111 G~~v~~G~~~~~~~  124 (546)
                      |++++.|+.++..+
T Consensus       213 G~i~~~~~~~~~~~  226 (238)
T cd03249         213 GQVVEQGTHDELMA  226 (238)
T ss_pred             CEEEEeCCHHHHhh
Confidence            99999998876544

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.81  E-value=1.7e-19  Score=174.65  Aligned_cols=92  Identities=33%  Similarity=0.461  Sum_probs=83.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcCeEEEEeCC
Q 009033           33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGG  111 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~-~~D~v~lL~~G  111 (546)
                      +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.+ .+|++++|++|
T Consensus       103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~-~~~~~~~~d~i~~l~~G  181 (200)
T cd03217         103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ-RLLDYIKPDRVHVLYDG  181 (200)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhhCCEEEEEECC
Confidence            57999999999999999999999999999999999999999999999988889999999996 56766 79999999999


Q ss_pred             eEEEecChhHHHHHH
Q 009033          112 KTVYFGETSAAFEFF  126 (546)
Q Consensus       112 ~~v~~G~~~~~~~~f  126 (546)
                      +++..|+.+ +.+.+
T Consensus       182 ~i~~~~~~~-~~~~~  195 (200)
T cd03217         182 RIVKSGDKE-LALEI  195 (200)
T ss_pred             EEEEEccHH-HHhhh
Confidence            999999554 44444

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2.2e-19  Score=183.18  Aligned_cols=110  Identities=28%  Similarity=0.426  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            6 KRTLVERTIIEMGLQD----CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      .+++++++++.+||.+    ..++     .+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++
T Consensus       153 ~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~  227 (285)
T PRK14254        153 IDERVEESLRRAALWDEVKDQLDS-----SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA  227 (285)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence            3456888999999853    3444     446799999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEE-EEeCCeEEEecChhHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLY-LLSGGKTVYFGETSAA  122 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~-lL~~G~~v~~G~~~~~  122 (546)
                      ++ .|||+++|++ .++.+++|+++ +|++|+++..|++++.
T Consensus       228 ~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~g~~~~~  267 (285)
T PRK14254        228 EE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVEFDDTDKI  267 (285)
T ss_pred             cC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence            74 8999999995 78889999975 6799999999988764

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2.6e-19  Score=184.38  Aligned_cols=113  Identities=27%  Similarity=0.466  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      ++.++++++.++|.+..+... +..++.||||||||++||++|+++|+||+|||||+|||+.++..+.+.|++++++ .|
T Consensus       174 ~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~t  251 (305)
T PRK14264        174 DELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YT  251 (305)
T ss_pred             HHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CE
Confidence            466788999998853222222 2245789999999999999999999999999999999999999999999999874 89


Q ss_pred             EEEEecCCchHHHhhcCeE-EEEeCCeEEEecChhHH
Q 009033           87 VIASIHQPSSEVFELFDRL-YLLSGGKTVYFGETSAA  122 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v-~lL~~G~~v~~G~~~~~  122 (546)
                      ||+++|++ .++.+++|++ ++|++|+++..|++++.
T Consensus       252 iiivtH~~-~~i~~~~d~i~~~l~~G~i~~~g~~~~~  287 (305)
T PRK14264        252 VVVVTHNM-QQAARISDQTAVFLTGGELVEYDDTDKI  287 (305)
T ss_pred             EEEEEcCH-HHHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence            99999996 6788999997 57899999999998765

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.80  E-value=1.8e-19  Score=174.57  Aligned_cols=109  Identities=31%  Similarity=0.438  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++..+++..+++.+|+.+.+|+..+     .||-||||||-|||||+.+|.+||||||++|||..++..+++.|.+++..
T Consensus       146 ~~~~~~a~~lle~~g~~~la~r~~~-----~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~  220 (257)
T COG1119         146 AEDLAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS  220 (257)
T ss_pred             HHHHHHHHHHHHHcchhhhccCchh-----hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC
Confidence            4556788999999999999999776     59999999999999999999999999999999999999999999999874


Q ss_pred             --CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009033           84 --GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE  118 (546)
Q Consensus        84 --g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~  118 (546)
                        +.++|+++|++ +|+...|++++++++|+++++|-
T Consensus       221 ~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         221 PGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             CCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence              88999999996 89999999999999999999883

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.3e-19  Score=196.56  Aligned_cols=109  Identities=28%  Similarity=0.430  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            6 KRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      .++.++++++.+++. +..|+.+     ..|||||||||.||++++.+|+||+|||||+|||+.++..+++.|++++++|
T Consensus       367 ~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~  441 (491)
T PRK10982        367 MKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD  441 (491)
T ss_pred             HHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCC
Confidence            345678899999995 4566654     5699999999999999999999999999999999999999999999999889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChh
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS  120 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~  120 (546)
                      .|||+++|++ .++.+++|++++|++|+++..++++
T Consensus       442 ~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~  476 (491)
T PRK10982        442 KGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTK  476 (491)
T ss_pred             CEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEccc
Confidence            9999999995 7899999999999999999877653

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.80  E-value=2.6e-19  Score=181.61  Aligned_cols=114  Identities=21%  Similarity=0.300  Sum_probs=97.6

Q ss_pred             HHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQDCADTVIGN------WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~------~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +.+.+.++.+||.+..++..+.      +....||||||||+++||+|+.+|+||+|||||+|||+.+...+.+.|+++.
T Consensus       106 ~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~  185 (275)
T cd03289         106 EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF  185 (275)
T ss_pred             HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence            4567788899998766654321      1234599999999999999999999999999999999999999999999885


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                       +|+|||+++|++ ..+. .+|+|++|++|++++.|+++++.+
T Consensus       186 -~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~l~~  225 (275)
T cd03289         186 -ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQKLLN  225 (275)
T ss_pred             -CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence             489999999996 5665 599999999999999999998754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.8e-19  Score=190.36  Aligned_cols=114  Identities=31%  Similarity=0.458  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++.+.++++.+||++..       ||.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+
T Consensus       441 DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~  519 (573)
T COG4987         441 DEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE  519 (573)
T ss_pred             HHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence            35677788888887643       445765 5678999999999999999999999999999999999999999999988


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      -++ |+|+|++||+.. . .+.||+|++|++|+++..|.++++.+
T Consensus       520 ~~~-~kTll~vTHrL~-~-le~~drIivl~~Gkiie~G~~~~Ll~  561 (573)
T COG4987         520 HAE-GKTLLMVTHRLR-G-LERMDRIIVLDNGKIIEEGTHAELLA  561 (573)
T ss_pred             Hhc-CCeEEEEecccc-c-HhhcCEEEEEECCeeeecCCHHhhhc
Confidence            775 799999999964 3 57899999999999999999987654

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.80  E-value=2.3e-19  Score=164.42  Aligned_cols=105  Identities=31%  Similarity=0.454  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-   82 (546)
                      .+.++...+.++.+||.+..+.     ++.+|||||+|||+|||+++.+|+|||.||||.+||..+..+|.++|-.+.+ 
T Consensus       121 ~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre  195 (228)
T COG4181         121 ADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE  195 (228)
T ss_pred             ccHHHHHHHHHHHhCccccccc-----CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh
Confidence            3445668889999999887766     6778999999999999999999999999999999999999999999999986 


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY  115 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~  115 (546)
                      .|.|.|++||||  .+...|||.+-|..|+++.
T Consensus       196 ~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         196 RGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             cCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence            699999999997  5778899999999999864

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.80  E-value=3.5e-19  Score=172.75  Aligned_cols=97  Identities=36%  Similarity=0.487  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..++++++++.+||++..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       110 ~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  184 (206)
T TIGR03608       110 EKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEG  184 (206)
T ss_pred             HHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcC
Confidence            44567889999999988888755     4699999999999999999999999999999999999999999999998789


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEE
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLL  108 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL  108 (546)
                      .|+|+++|++ . ..+.+|++++|
T Consensus       185 ~tii~~sh~~-~-~~~~~d~i~~l  206 (206)
T TIGR03608       185 KTIIIVTHDP-E-VAKQADRVIEL  206 (206)
T ss_pred             CEEEEEeCCH-H-HHhhcCEEEeC
Confidence            9999999997 3 45789999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.80  E-value=4.6e-19  Score=198.08  Aligned_cols=114  Identities=30%  Similarity=0.384  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      +++++++++..|+.+       -.||.+|+. .+.||||||||++|||+|+++|+||+||||||+||+.+...+++.|++
T Consensus       447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~  525 (582)
T PRK11176        447 REQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             HHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            456777777777543       358888863 467999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +.+ ++|+|+++|++  +..+.+|+|++|++|+++..|+.++..+
T Consensus       526 ~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~  567 (582)
T PRK11176        526 LQK-NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA  567 (582)
T ss_pred             HhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            854 69999999997  4578899999999999999999987643

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=7.4e-19  Score=177.43  Aligned_cols=109  Identities=26%  Similarity=0.362  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQ----DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~----~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++++++++.+++.    +..++     ....||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       135 ~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~  209 (265)
T PRK14252        135 EERVENALRNAALWDEVKDRLGD-----LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN  209 (265)
T ss_pred             HHHHHHHHHHcCCchhhhHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence            45677788888874    22333     3457999999999999999999999999999999999999999999999976


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                       ++|||+++|++ +++.+++|++++|++|+++..|+.++.
T Consensus       210 -~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  247 (265)
T PRK14252        210 -KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDTI  247 (265)
T ss_pred             -CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence             68999999995 788899999999999999999998764

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.80  E-value=3.8e-19  Score=202.42  Aligned_cols=112  Identities=30%  Similarity=0.409  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      .+++.++++..|+.+.       .||.+|+. ...||||||||++|||+|+++|+||+||||||+||+.+..++.+.|++
T Consensus       555 ~e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~  633 (686)
T TIGR03797       555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER  633 (686)
T ss_pred             HHHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            3456777777777643       47888763 467999999999999999999999999999999999999999999988


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +   ++|+|+++|++  +..+.+|+|++|++|+++..|+.+++.+
T Consensus       634 ~---~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~  673 (686)
T TIGR03797       634 L---KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA  673 (686)
T ss_pred             h---CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            7   57999999997  3467799999999999999999987653

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.79  E-value=6.3e-19  Score=176.10  Aligned_cols=107  Identities=22%  Similarity=0.343  Sum_probs=92.6

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q 009033            9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTV   87 (546)
Q Consensus         9 ~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tv   87 (546)
                      .++++++.+||.+..++.+     ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+||
T Consensus        95 ~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti  169 (246)
T cd03237          95 FKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA  169 (246)
T ss_pred             HHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            4678899999988777755     46999999999999999999999999999999999999999999999986 58999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEE--EecChhH
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTV--YFGETSA  121 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v--~~G~~~~  121 (546)
                      |+++|++ .++..++|++++|+++..+  ..+++.+
T Consensus       170 iivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~  204 (246)
T cd03237         170 FVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS  204 (246)
T ss_pred             EEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence            9999995 7888899999999765443  3345544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.79  E-value=3.6e-19  Score=171.24  Aligned_cols=84  Identities=52%  Similarity=0.937  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC-Ce
Q 009033           34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GK  112 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~-G~  112 (546)
                      .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++ |+
T Consensus       108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~  187 (192)
T cd03232         108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK  187 (192)
T ss_pred             cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence            69999999999999999999999999999999999999999999999888999999999974357889999999998 99


Q ss_pred             EEEec
Q 009033          113 TVYFG  117 (546)
Q Consensus       113 ~v~~G  117 (546)
                      +++.|
T Consensus       188 i~~~g  192 (192)
T cd03232         188 TVYFG  192 (192)
T ss_pred             EEeCC
Confidence            99876

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.79  E-value=4.5e-19  Score=170.89  Aligned_cols=84  Identities=68%  Similarity=1.094  Sum_probs=79.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++|++
T Consensus       111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i  190 (194)
T cd03213         111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV  190 (194)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence            69999999999999999999999999999999999999999999999878999999999975578889999999999999


Q ss_pred             EEec
Q 009033          114 VYFG  117 (546)
Q Consensus       114 v~~G  117 (546)
                      ++.|
T Consensus       191 ~~~~  194 (194)
T cd03213         191 IYFG  194 (194)
T ss_pred             EecC
Confidence            8765

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.79  E-value=6.1e-19  Score=174.74  Aligned_cols=90  Identities=37%  Similarity=0.521  Sum_probs=82.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      .++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |.|||+++|++ .++. .+|++++|++
T Consensus       134 ~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~-~~d~~~~l~~  210 (236)
T cd03253         134 RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL-STIV-NADKIIVLKD  210 (236)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHH-hCCEEEEEEC
Confidence            3568999999999999999999999999999999999999999999999987 99999999996 5664 5999999999


Q ss_pred             CeEEEecChhHHH
Q 009033          111 GKTVYFGETSAAF  123 (546)
Q Consensus       111 G~~v~~G~~~~~~  123 (546)
                      |+++..|+.++..
T Consensus       211 g~i~~~~~~~~~~  223 (236)
T cd03253         211 GRIVERGTHEELL  223 (236)
T ss_pred             CEEEeeCCHHHHh
Confidence            9999999877643

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=4.3e-19  Score=190.11  Aligned_cols=114  Identities=32%  Similarity=0.465  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHcCCccc------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDC------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++.+.++++..||.+.      .|+.+|+ ..++|||||+|||++||+|+++++++++||||++||..+...|.+.|.++
T Consensus       424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l  502 (559)
T COG4988         424 DEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL  502 (559)
T ss_pred             HHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence            4667778888887653      3677775 66789999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +++ +|+++++|++  +...-+|+|++|++|+++..|.++++.+
T Consensus       503 ~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~  543 (559)
T COG4988         503 AKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE  543 (559)
T ss_pred             HhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence            986 9999999996  5678899999999999999999988643

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.79  E-value=6.2e-19  Score=196.69  Aligned_cols=114  Identities=29%  Similarity=0.486  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHcCCccc------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDC------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++.++++++..++++.      .||.+|+ ....||||||||++|||+++++|++|+|||||++||+.+..++.+.|+++
T Consensus       443 ~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~  521 (574)
T PRK11160        443 DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH  521 (574)
T ss_pred             HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            4567888999998754      4688876 45679999999999999999999999999999999999999999999998


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      . +|+|+|+++|++ +.+ ..+|+|++|++|+++..|+.+++.+
T Consensus       522 ~-~~~tviiitHr~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~  562 (574)
T PRK11160        522 A-QNKTVLMITHRL-TGL-EQFDRICVMDNGQIIEQGTHQELLA  562 (574)
T ss_pred             c-CCCEEEEEecCh-hHH-HhCCEEEEEeCCeEEEeCCHHHHHh
Confidence            6 479999999997 344 6699999999999999999887653

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.79  E-value=8.1e-19  Score=171.58  Aligned_cols=110  Identities=20%  Similarity=0.249  Sum_probs=95.3

Q ss_pred             HHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q 009033           12 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI   91 (546)
Q Consensus        12 ~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~   91 (546)
                      .+.+.++|++..|+.+     +.+|||||||+++|++|+.+|++++|||||+++|+.++..+.+.+.+..+ ++|+|+++
T Consensus        87 ~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vs  160 (213)
T PRK15177         87 FCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLT  160 (213)
T ss_pred             HHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEE
Confidence            3445678887777755     46999999999999999999999999999999999999999998865443 36899999


Q ss_pred             cCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHH
Q 009033           92 HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ  128 (546)
Q Consensus        92 H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~  128 (546)
                      |++ .++..++|++++|++|++++.|+.+++.++++.
T Consensus       161 H~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~  196 (213)
T PRK15177        161 HNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ  196 (213)
T ss_pred             CCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence            996 678889999999999999999999998776544

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.79  E-value=6.8e-19  Score=195.20  Aligned_cols=98  Identities=34%  Similarity=0.602  Sum_probs=88.6

Q ss_pred             ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033           23 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        23 ~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~  102 (546)
                      .||.+|+ ....||||||||++|||+++++|++|+|||||+|||+.++.++.+.|+++..+|+|+|+++|++ + ..+.+
T Consensus       444 l~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~-~-~~~~~  520 (544)
T TIGR01842       444 YDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP-S-LLGCV  520 (544)
T ss_pred             cccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCH-H-HHHhC
Confidence            4677765 4567999999999999999999999999999999999999999999999976789999999997 3 45789


Q ss_pred             CeEEEEeCCeEEEecChhHHH
Q 009033          103 DRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus       103 D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |++++|++|++++.|+.++..
T Consensus       521 d~i~~l~~G~i~~~g~~~~l~  541 (544)
T TIGR01842       521 DKILVLQDGRIARFGERDEVL  541 (544)
T ss_pred             CEEEEEECCEEEeeCCHHHHh
Confidence            999999999999999988754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.79  E-value=1.1e-18  Score=195.59  Aligned_cols=113  Identities=21%  Similarity=0.323  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      +++++++++..|+.+       -.||.+|. ....||||||||++|||+|+.+|+||+||||||+||+.+..++.+.|++
T Consensus       443 d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~  521 (592)
T PRK10790        443 EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA  521 (592)
T ss_pred             HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            356778888888764       34777876 4457999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +.+ ++|+|+++|++  +....+|+|++|++|+++..|+.+++.
T Consensus       522 ~~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~  562 (592)
T PRK10790        522 VRE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLL  562 (592)
T ss_pred             HhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            865 59999999997  456779999999999999999999865

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.78  E-value=1.1e-18  Score=175.40  Aligned_cols=90  Identities=22%  Similarity=0.311  Sum_probs=82.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      ..+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++ .++.. +|++++|++
T Consensus       153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~-~~~~~-~dri~~l~~  229 (257)
T cd03288         153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRV-STILD-ADLVLVLSR  229 (257)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecCh-HHHHh-CCEEEEEEC
Confidence            456899999999999999999999999999999999999999999999985 489999999997 45654 999999999


Q ss_pred             CeEEEecChhHHH
Q 009033          111 GKTVYFGETSAAF  123 (546)
Q Consensus       111 G~~v~~G~~~~~~  123 (546)
                      |+++..|++++..
T Consensus       230 G~i~~~g~~~~~~  242 (257)
T cd03288         230 GILVECDTPENLL  242 (257)
T ss_pred             CEEEEeCCHHHHH
Confidence            9999999988654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.78  E-value=7.5e-19  Score=170.40  Aligned_cols=89  Identities=40%  Similarity=0.705  Sum_probs=80.0

Q ss_pred             CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEE
Q 009033           29 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYL  107 (546)
Q Consensus        29 ~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~l  107 (546)
                      +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+++|++++
T Consensus       113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~  192 (202)
T cd03233         113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV  192 (202)
T ss_pred             ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence            3355679999999999999999999999999999999999999999999999875 678777777655788999999999


Q ss_pred             EeCCeEEEec
Q 009033          108 LSGGKTVYFG  117 (546)
Q Consensus       108 L~~G~~v~~G  117 (546)
                      |++|++++.|
T Consensus       193 l~~G~i~~~g  202 (202)
T cd03233         193 LYEGRQIYYG  202 (202)
T ss_pred             EECCEEEecC
Confidence            9999998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.78  E-value=1.2e-18  Score=174.73  Aligned_cols=105  Identities=30%  Similarity=0.387  Sum_probs=93.2

Q ss_pred             HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            8 TLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         8 ~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~---P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +++.++++.+||.+ ..++.     ...||||||||+.||++|+.+   |++++|||||+|||+.....+.+.|+++.++
T Consensus       147 ~~~~~~L~~vgL~~l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~  221 (261)
T cd03271         147 ARKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK  221 (261)
T ss_pred             HHHHHHHHHcCCchhhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence            45677899999986 45554     457999999999999999996   7999999999999999999999999999988


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCh
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGET  119 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~  119 (546)
                      |.|||+++|++ ..+ +.+|+++.|      ++|++++.|++
T Consensus       222 g~tvIiitH~~-~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         222 GNTVVVIEHNL-DVI-KCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             CCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            99999999996 444 679999999      89999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.78  E-value=9e-19  Score=200.14  Aligned_cols=112  Identities=29%  Similarity=0.417  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++++.++++..|+.+       -.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+..++.+.|++
T Consensus       582 ~~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~  660 (710)
T TIGR03796       582 DADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR  660 (710)
T ss_pred             HHHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence            345666777776654       35788876 3467999999999999999999999999999999999999999999986


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                         .++|+|+++|++ + ....+|+|++|++|+++..|+.+++.+
T Consensus       661 ---~~~T~IiitHrl-~-~i~~~D~Iivl~~G~i~~~G~~~~Ll~  700 (710)
T TIGR03796       661 ---RGCTCIIVAHRL-S-TIRDCDEIIVLERGKVVQRGTHEELWA  700 (710)
T ss_pred             ---cCCEEEEEecCH-H-HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence               479999999997 3 456799999999999999999998754

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.78  E-value=9.1e-19  Score=164.09  Aligned_cols=81  Identities=40%  Similarity=0.519  Sum_probs=77.0

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      +||||||||+++|++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.+.+|+++++++|++
T Consensus        82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i  160 (163)
T cd03216          82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRV  160 (163)
T ss_pred             ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence            3999999999999999999999999999999999999999999999987899999999995 678899999999999998


Q ss_pred             EE
Q 009033          114 VY  115 (546)
Q Consensus       114 v~  115 (546)
                      ++
T Consensus       161 ~~  162 (163)
T cd03216         161 VG  162 (163)
T ss_pred             Ee
Confidence            75

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.78  E-value=9.3e-19  Score=199.50  Aligned_cols=114  Identities=30%  Similarity=0.497  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++++.++++..|+.+       -.||.+|+ ....||||||||++|||+|+.+|++++||||||+||+.+..++.+.|++
T Consensus       568 ~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~  646 (694)
T TIGR03375       568 DEEILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR  646 (694)
T ss_pred             HHHHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            345566677666543       45788886 3567999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +.+ ++|+|+++|+++  ..+.+|+|++|++|+++..|+.+++.+
T Consensus       647 ~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~  688 (694)
T TIGR03375       647 WLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE  688 (694)
T ss_pred             HhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence            864 799999999973  468899999999999999999988765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.78  E-value=1.4e-18  Score=164.64  Aligned_cols=99  Identities=27%  Similarity=0.338  Sum_probs=85.3

Q ss_pred             HHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033           11 ERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus        11 ~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~--P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      .+.++.++|.. ..++.     ++.||||||||++||++|+.+  |++++|||||+|||+.++..+.+.|++++++|+||
T Consensus        68 ~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tv  142 (176)
T cd03238          68 LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV  142 (176)
T ss_pred             HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence            35788899975 35654     457999999999999999999  99999999999999999999999999998789999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTVYF  116 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~  116 (546)
                      |+++|++ .++ +.+|++++|.+|+..+.
T Consensus       143 IivSH~~-~~~-~~~d~i~~l~~g~~~~~  169 (176)
T cd03238         143 ILIEHNL-DVL-SSADWIIDFGPGSGKSG  169 (176)
T ss_pred             EEEeCCH-HHH-HhCCEEEEECCCCCCCC
Confidence            9999996 454 68999999976554333

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.7e-18  Score=161.90  Aligned_cols=119  Identities=29%  Similarity=0.412  Sum_probs=107.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++|.++++++.+.+..+||++..++.|     .+|||||||||.|||+|+.+|++|+||||.+.||.-+++++..+|-++
T Consensus       104 i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl  178 (259)
T COG4525         104 IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL  178 (259)
T ss_pred             CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence            468899999999999999999888754     679999999999999999999999999999999999999999999998


Q ss_pred             Hh-CCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecChhHHHHH
Q 009033           81 SR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETSAAFEF  125 (546)
Q Consensus        81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~--~G~~v~~G~~~~~~~~  125 (546)
                      ++ .|+.++++||+ .+|..-+++++++|+  .|+++..=+++=...|
T Consensus       179 w~~tgk~~lliTH~-ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~  225 (259)
T COG4525         179 WQETGKQVLLITHD-IEEALFLATRLVVLSPGPGRVVERLPLDFARRY  225 (259)
T ss_pred             HHHhCCeEEEEecc-HHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence            86 69999999999 588889999999998  5899988777644443

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.78  E-value=1e-18  Score=194.69  Aligned_cols=102  Identities=34%  Similarity=0.547  Sum_probs=91.2

Q ss_pred             CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009033           19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV   98 (546)
Q Consensus        19 L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i   98 (546)
                      |.+-.||.+|+ ....||||||||++|||+++.+|+||+||||||.||+.+...+.+.++++. +|+|+++++|++ +.+
T Consensus       451 lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRl-sti  527 (567)
T COG1132         451 LPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRL-STI  527 (567)
T ss_pred             CcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccH-hHH
Confidence            34467999994 556799999999999999999999999999999999999999999999887 568999999997 445


Q ss_pred             HhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           99 FELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        99 ~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+ +|+|++|++|+++..|+++++..
T Consensus       528 ~~-aD~IiVl~~G~i~e~G~h~eLl~  552 (567)
T COG1132         528 KN-ADRIIVLDNGRIVERGTHEELLA  552 (567)
T ss_pred             Hh-CCEEEEEECCEEEEecCHHHHHH
Confidence            44 99999999999999999998765

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.78  E-value=1.1e-18  Score=175.07  Aligned_cols=106  Identities=27%  Similarity=0.386  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.++.++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       115 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~  189 (255)
T cd03236         115 DERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDD  189 (255)
T ss_pred             HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            33567889999999988777644     5699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      +|||+++|++ .++.+++|++++|+ |++.+.|
T Consensus       190 ~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~  220 (255)
T cd03236         190 NYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG  220 (255)
T ss_pred             CEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence            9999999995 67888999999995 5566544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.78  E-value=1.1e-18  Score=167.85  Aligned_cols=109  Identities=28%  Similarity=0.491  Sum_probs=99.8

Q ss_pred             HHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q 009033           10 VERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTV   87 (546)
Q Consensus        10 v~~~l~~lg-L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~tv   87 (546)
                      ++++.+.+- |.+.++++-|+     |||||||.++|||+|+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||
T Consensus       116 ~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tI  190 (237)
T COG0410         116 LEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI  190 (237)
T ss_pred             HHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEE
Confidence            777888874 88888888775     9999999999999999999999999999999999999999999999975 7899


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +++.+. ...+.+++||.++|.+|+++++|+.+++.+
T Consensus       191 lLVEQn-~~~Al~iaDr~yvle~Griv~~G~~~eL~~  226 (237)
T COG0410         191 LLVEQN-ARFALEIADRGYVLENGRIVLSGTAAELLA  226 (237)
T ss_pred             EEEecc-HHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence            999988 578999999999999999999999988643

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.78  E-value=6.2e-19  Score=198.14  Aligned_cols=102  Identities=34%  Similarity=0.508  Sum_probs=92.6

Q ss_pred             CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009033           19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV   98 (546)
Q Consensus        19 L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i   98 (546)
                      +..-.||.+|+ ...+||||||||++|||+|+++|+||+||||||+||+.+...|.+.|+++.+ |+|+|+++|.+  ..
T Consensus       595 lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl--~t  670 (709)
T COG2274         595 LPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRL--ST  670 (709)
T ss_pred             ccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccc--hH
Confidence            44456888886 5568999999999999999999999999999999999999999999999975 59999999997  46


Q ss_pred             HhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           99 FELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        99 ~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+.+|+|++|++|+++.+|+.+++.+
T Consensus       671 i~~adrIiVl~~Gkiv~~gs~~ell~  696 (709)
T COG2274         671 IRSADRIIVLDQGKIVEQGSHEELLA  696 (709)
T ss_pred             hhhccEEEEccCCceeccCCHHHHHH
Confidence            89999999999999999999998765

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.78  E-value=1.2e-18  Score=170.84  Aligned_cols=107  Identities=23%  Similarity=0.400  Sum_probs=89.9

Q ss_pred             HHHHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQDCADT-------VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~-------~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++.+.++.+++.+..++       .. +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       107 ~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  185 (221)
T cd03244         107 EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA  185 (221)
T ss_pred             HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            345666777777654432       11 2256789999999999999999999999999999999999999999999998


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE  118 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~  118 (546)
                      ++ +.|||+++|++ .++. .+|++++|++|+++..|+
T Consensus       186 ~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         186 FK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             cC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence            65 68999999996 5665 499999999999998876

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.78  E-value=1.3e-18  Score=193.91  Aligned_cols=113  Identities=34%  Similarity=0.456  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      +++++++++..||++       -.||.+|+. .+.||||||||++|||+++.+|+|++||||||+||+.+..++++.|++
T Consensus       436 ~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~  514 (571)
T TIGR02203       436 RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER  514 (571)
T ss_pred             HHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            456777888887753       357888864 467999999999999999999999999999999999999999999998


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ +++|+|++||++  +..+.+|+|++|++|+++..|+.++..
T Consensus       515 ~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~  555 (571)
T TIGR02203       515 LM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL  555 (571)
T ss_pred             Hh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence            85 469999999997  567889999999999999999998764

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.78  E-value=1.3e-18  Score=198.70  Aligned_cols=112  Identities=26%  Similarity=0.369  Sum_probs=96.6

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++.++++..|+.+       -.||.+|+ ....||||||||++|||+++++|+||+||||||+||+.+..++++.|+++
T Consensus       579 ~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~  657 (708)
T TIGR01193       579 DEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL  657 (708)
T ss_pred             HHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            45666677666643       35788886 44679999999999999999999999999999999999999999999985


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                        +|+|+|+++|+++  ..+.+|+|++|++|+++..|+.+++.+
T Consensus       658 --~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~  697 (708)
T TIGR01193       658 --QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD  697 (708)
T ss_pred             --cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence              4799999999973  568899999999999999999987654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.77  E-value=1.7e-18  Score=197.26  Aligned_cols=113  Identities=30%  Similarity=0.460  Sum_probs=96.5

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+.++++..|+.+       -.||.+|+ ....||||||||++|||+|+++|++|+|||||++||+.+..++.+.|+++
T Consensus       561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~  639 (694)
T TIGR01846       561 EHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI  639 (694)
T ss_pred             HHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence            44556666666543       35788876 35689999999999999999999999999999999999999999999998


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      . +|+|+|+++|++ +. .+.+|++++|++|+++..|+.+++.+
T Consensus       640 ~-~~~t~i~itH~~-~~-~~~~d~ii~l~~G~i~~~g~~~~l~~  680 (694)
T TIGR01846       640 C-RGRTVIIIAHRL-ST-VRACDRIIVLEKGQIAESGRHEELLA  680 (694)
T ss_pred             h-CCCEEEEEeCCh-HH-HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence            5 579999999997 34 46799999999999999999887653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.77  E-value=1.1e-18  Score=191.10  Aligned_cols=105  Identities=24%  Similarity=0.401  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-
Q 009033            7 RTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-   84 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g-   84 (546)
                      +++++++++.+||.+ ..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++| 
T Consensus       378 ~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~  452 (490)
T PRK10938        378 QKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGE  452 (490)
T ss_pred             HHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence            457889999999987 777755     4699999999999999999999999999999999999999999999998875 


Q ss_pred             CEEEEEecCCchHHHh-hcCeEEEEeCCeEEEec
Q 009033           85 RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~-~~D~v~lL~~G~~v~~G  117 (546)
                      .|||+++|++ .++.+ ++|++++|++|+++..-
T Consensus       453 ~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        453 TQLLFVSHHA-EDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             cEEEEEecch-hhhhhhhheeEEEecCCceEEee
Confidence            5799999996 67776 58999999999987654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.77  E-value=1.4e-18  Score=168.20  Aligned_cols=96  Identities=29%  Similarity=0.371  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      .++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus       103 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t  177 (201)
T cd03231         103 DEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM  177 (201)
T ss_pred             HHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence            456788999999988777754     569999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEecCCchHHHhhcCeEEEE
Q 009033           87 VIASIHQPSSEVFELFDRLYLL  108 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL  108 (546)
                      +|+++|++ .+....+|+++++
T Consensus       178 iii~sH~~-~~~~~~~~~~~~~  198 (201)
T cd03231         178 VVLTTHQD-LGLSEAGARELDL  198 (201)
T ss_pred             EEEEecCc-hhhhhccceeEec
Confidence            99999997 5778899999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.77  E-value=1.2e-18  Score=169.00  Aligned_cols=96  Identities=28%  Similarity=0.341  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      +++++++++.+||++..|+.+     ..||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus       107 ~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t  181 (204)
T PRK13538        107 DEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGM  181 (204)
T ss_pred             HHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence            467889999999988777754     569999999999999999999999999999999999999999999999888899


Q ss_pred             EEEEecCCchHHHhhcCeEEEE
Q 009033           87 VIASIHQPSSEVFELFDRLYLL  108 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL  108 (546)
                      ||+++|++ .++.++-+|++++
T Consensus       182 iii~sh~~-~~i~~~~~~~~~~  202 (204)
T PRK13538        182 VILTTHQD-LPVASDKVRKLRL  202 (204)
T ss_pred             EEEEecCh-hhhccCCceEEec
Confidence            99999996 6777777788776

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.77  E-value=2e-18  Score=193.01  Aligned_cols=98  Identities=33%  Similarity=0.446  Sum_probs=87.4

Q ss_pred             ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033           23 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        23 ~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~  102 (546)
                      .||.+|+ ....||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. +|+|+|+++|++ +.+ +.+
T Consensus       461 ~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~-~~~-~~~  536 (585)
T TIGR01192       461 YDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRL-STV-RNA  536 (585)
T ss_pred             ccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCh-HHH-HcC
Confidence            4666765 456799999999999999999999999999999999999999999999885 489999999997 444 679


Q ss_pred             CeEEEEeCCeEEEecChhHHHH
Q 009033          103 DRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus       103 D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |+|++|++|+++..|+.++..+
T Consensus       537 d~i~~l~~G~i~~~g~~~~l~~  558 (585)
T TIGR01192       537 DLVLFLDQGRLIEKGSFQELIQ  558 (585)
T ss_pred             CEEEEEECCEEEEECCHHHHHH
Confidence            9999999999999999887643

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.77  E-value=1.3e-18  Score=164.62  Aligned_cols=78  Identities=40%  Similarity=0.632  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.+.+|++++|++|++
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI  173 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence            999999999999999999999999999999999999999999999988899999999996 678889999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.77  E-value=2.4e-18  Score=191.85  Aligned_cols=113  Identities=26%  Similarity=0.389  Sum_probs=96.3

Q ss_pred             HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~-------~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.++++++..++.       +-.||.+|+ ....||||||||++|||+|+++|++++|||||+|||+.+..++.+.|+++
T Consensus       419 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~  497 (569)
T PRK10789        419 QEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW  497 (569)
T ss_pred             HHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            4455666666654       335778876 45679999999999999999999999999999999999999999999998


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      . +|+|+|+++|++ + ..+.+|++++|++|+++..|+.++..+
T Consensus       498 ~-~~~tii~itH~~-~-~~~~~d~i~~l~~G~i~~~g~~~~l~~  538 (569)
T PRK10789        498 G-EGRTVIISAHRL-S-ALTEASEILVMQHGHIAQRGNHDQLAQ  538 (569)
T ss_pred             h-CCCEEEEEecch-h-HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence            5 589999999997 3 457799999999999999999887643

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.77  E-value=2e-18  Score=168.77  Aligned_cols=98  Identities=23%  Similarity=0.391  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      ++.++++++.++|.+..++.+     ..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus       115 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t  189 (214)
T PRK13543        115 KQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA  189 (214)
T ss_pred             HHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence            345678899999988777755     469999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      ||+++|++ .++.+++|++++++.
T Consensus       190 iii~sH~~-~~~~~~~~~i~~l~~  212 (214)
T PRK13543        190 ALVTTHGA-YAAPPVRTRMLTLEA  212 (214)
T ss_pred             EEEEecCh-hhhhhhcceEEEEee
Confidence            99999996 789999999999864

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.77  E-value=2.7e-18  Score=192.18  Aligned_cols=113  Identities=32%  Similarity=0.430  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++++.++++..|+++       -.||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.+...+.+.|++
T Consensus       438 d~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~  516 (588)
T PRK13657        438 DEEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE  516 (588)
T ss_pred             HHHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            344666677766543       35777876 3557999999999999999999999999999999999999999999998


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +.+ ++|+|+++|++  +..+.+|+|++|++|+++..|+.++..
T Consensus       517 ~~~-~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~  557 (588)
T PRK13657        517 LMK-GRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELV  557 (588)
T ss_pred             Hhc-CCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            854 79999999997  356889999999999999999988764

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.77  E-value=1.6e-18  Score=170.70  Aligned_cols=96  Identities=33%  Similarity=0.465  Sum_probs=84.1

Q ss_pred             HHHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033           10 VERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus        10 v~~~l~~l--gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      +++.++.+  |+++..++.     ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+
T Consensus       129 ~~~~l~~l~~gl~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ti  202 (226)
T cd03248         129 AHSFISELASGYDTEVGEK-----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTV  202 (226)
T ss_pred             cHHHHHhccccccchhhcC-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEE
Confidence            46677777  777666554     467999999999999999999999999999999999999999999999876 6899


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      |+++|++ .++. .+|++++|++|++
T Consensus       203 i~~sh~~-~~~~-~~d~i~~l~~g~i  226 (226)
T cd03248         203 LVIAHRL-STVE-RADQILVLDGGRI  226 (226)
T ss_pred             EEEECCH-HHHH-hCCEEEEecCCcC
Confidence            9999997 5664 5999999999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.77  E-value=1.8e-18  Score=170.51  Aligned_cols=105  Identities=22%  Similarity=0.340  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG   84 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g   84 (546)
                      +++++++++.+||. ...++.     ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus       114 ~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  188 (225)
T PRK10247        114 PAIFLDDLERFALPDTILTKN-----IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN  188 (225)
T ss_pred             HHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            35678899999995 456664     456999999999999999999999999999999999999999999999986 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEe-CCeEEEecC
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGE  118 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~-~G~~v~~G~  118 (546)
                      .|||+++|++ .++ ..+|++++|. ++..+..|.
T Consensus       189 ~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~  221 (225)
T PRK10247        189 IAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEAR  221 (225)
T ss_pred             CEEEEEECCh-HHH-HhCCEEEEEecccchHhhhh
Confidence            9999999996 566 4699999995 555555554

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.76  E-value=3.2e-18  Score=168.34  Aligned_cols=99  Identities=24%  Similarity=0.325  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +..+++.++++.+||.+ ..++.     +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       124 ~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  198 (224)
T TIGR02324       124 AARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR  198 (224)
T ss_pred             HHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence            34567788999999975 34554     4579999999999999999999999999999999999999999999999878


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      |+|||+++|++ ..+.+++|+++.+.
T Consensus       199 g~tii~vsH~~-~~~~~~~d~i~~~~  223 (224)
T TIGR02324       199 GAALIGIFHDE-EVRELVADRVMDVT  223 (224)
T ss_pred             CCEEEEEeCCH-HHHHHhcceeEecC
Confidence            99999999994 67778999998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.76  E-value=2.5e-18  Score=196.23  Aligned_cols=112  Identities=31%  Similarity=0.470  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++.+.++++..++++       -.||.+|+ ....||||||||++|||+++++|+||+||||||+||+.+...+.+ .. 
T Consensus       584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-  660 (711)
T TIGR00958       584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-  660 (711)
T ss_pred             HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-
Confidence            456677788777654       35788886 346799999999999999999999999999999999999999888 22 


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                       ..+++|+|+++|++ + ..+.+|+|++|++|+++..|+++++.+
T Consensus       661 -~~~~~TvIiItHrl-~-~i~~aD~IivL~~G~ive~Gt~~eL~~  702 (711)
T TIGR00958       661 -SRASRTVLLIAHRL-S-TVERADQILVLKKGSVVEMGTHKQLME  702 (711)
T ss_pred             -ccCCCeEEEEeccH-H-HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence             23689999999997 3 467799999999999999999988654

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.76  E-value=1.8e-18  Score=163.64  Aligned_cols=77  Identities=35%  Similarity=0.600  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      ||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++ +.+|++++|++|++
T Consensus        97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i  173 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL-ASADRILVLEDGRV  173 (173)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence            999999999999999999999999999999999999999999999988899999999996 455 68999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.76  E-value=1.6e-18  Score=165.23  Aligned_cols=78  Identities=32%  Similarity=0.553  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.+++|++++|++|++
T Consensus       105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI  182 (182)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence            999999999999999999999999999999999999999999999987789999999995 789999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.76  E-value=2.7e-18  Score=163.10  Aligned_cols=83  Identities=31%  Similarity=0.492  Sum_probs=76.6

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  111 (546)
                      +..||||||||++||++++.+|++++|||||+|||+.++..+++.|++++ +|.|||+++|++ .++ ..+|++++|++|
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~~~~l~~g  172 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL-TGI-EHMDKILFLENG  172 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HhCCEEEEEECC
Confidence            56799999999999999999999999999999999999999999999996 489999999996 556 469999999999


Q ss_pred             eEEEec
Q 009033          112 KTVYFG  117 (546)
Q Consensus       112 ~~v~~G  117 (546)
                      ++++.|
T Consensus       173 ~i~~~~  178 (178)
T cd03247         173 KIIMQG  178 (178)
T ss_pred             EEEecC
Confidence            998765

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.76  E-value=2.5e-18  Score=164.86  Aligned_cols=85  Identities=38%  Similarity=0.557  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||++..|+.+     ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       103 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~  177 (190)
T TIGR01166       103 EVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG  177 (190)
T ss_pred             HHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            34567889999999988777754     5699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCC
Q 009033           85 RTVIASIHQP   94 (546)
Q Consensus        85 ~tvi~~~H~p   94 (546)
                      +|||+++|++
T Consensus       178 ~tili~sH~~  187 (190)
T TIGR01166       178 MTVVISTHDV  187 (190)
T ss_pred             CEEEEEeecc
Confidence            9999999996

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.76  E-value=3.2e-18  Score=166.35  Aligned_cols=86  Identities=24%  Similarity=0.469  Sum_probs=78.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++. +|.|+|+++|++ .++.. +|++++|++
T Consensus       122 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~-~~~~~-~d~v~~l~~  198 (207)
T cd03369         122 GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRL-RTIID-YDKILVMDA  198 (207)
T ss_pred             CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHhh-CCEEEEEEC
Confidence            456899999999999999999999999999999999999999999999985 489999999996 55654 999999999


Q ss_pred             CeEEEecCh
Q 009033          111 GKTVYFGET  119 (546)
Q Consensus       111 G~~v~~G~~  119 (546)
                      |+++..|++
T Consensus       199 g~i~~~g~~  207 (207)
T cd03369         199 GEVKEYDHP  207 (207)
T ss_pred             CEEEecCCC
Confidence            999988863

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=4.4e-18  Score=188.16  Aligned_cols=108  Identities=21%  Similarity=0.322  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~-~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      +++++++++.+||.+.. +..     +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++   .|.
T Consensus       132 ~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~  203 (530)
T PRK15064        132 EARAGELLLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNS  203 (530)
T ss_pred             HHHHHHHHHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCC
Confidence            46788999999997543 343     356999999999999999999999999999999999999999999864   589


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeE-EEecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~-v~~G~~~~~~  123 (546)
                      |||+++|++ ..+.+++|++++|++|++ ++.|++++..
T Consensus       204 tiiivsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~  241 (530)
T PRK15064        204 TMIIISHDR-HFLNSVCTHMADLDYGELRVYPGNYDEYM  241 (530)
T ss_pred             eEEEEeCCH-HHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence            999999995 788999999999999999 5889887654

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.75  E-value=5.5e-18  Score=191.36  Aligned_cols=113  Identities=27%  Similarity=0.373  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.++++.++++.+||++..|+..     +.||||||||+.||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       119 ~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~  193 (648)
T PRK10535        119 KQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR  193 (648)
T ss_pred             HHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence            455677899999999998888755     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |+|+|+++|++ ..+ +.+|++++|++|++++.|++++..
T Consensus       194 g~tilivsH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        194 GHTVIIVTHDP-QVA-AQAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             CCEEEEECCCH-HHH-HhCCEEEEEECCEEEeecCccccc
Confidence            99999999996 444 679999999999999999998764

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.75  E-value=5.8e-18  Score=188.99  Aligned_cols=113  Identities=31%  Similarity=0.423  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      +++++++++..|+.+       -.||.+|+ ....||||||||+++||+++.+|++|+||||||+||+.++..+++.|++
T Consensus       443 ~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~  521 (576)
T TIGR02204       443 DEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET  521 (576)
T ss_pred             HHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence            356677777777653       24677775 3467999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +. +++|+|+++|++  +....+|+++.+++|+++..|+.++..
T Consensus       522 ~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~  562 (576)
T TIGR02204       522 LM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELI  562 (576)
T ss_pred             Hh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHH
Confidence            85 479999999997  456789999999999999999988653

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.75  E-value=3.7e-18  Score=162.21  Aligned_cols=77  Identities=40%  Similarity=0.605  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033           35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.+.+|++++|++|+
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK  178 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence            9999999999999999999999999999999999999999999999887 89999999995 67888999999999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=2.6e-18  Score=197.19  Aligned_cols=103  Identities=35%  Similarity=0.493  Sum_probs=94.6

Q ss_pred             CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009033           18 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE   97 (546)
Q Consensus        18 gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~   97 (546)
                      +|.+-.||.+|+ +..+||||||||++||||++.||+||+|||.||.||+.+...|.+.|.+.. .|+|.|++.|+++  
T Consensus      1111 sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS-- 1186 (1228)
T KOG0055|consen 1111 SLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS-- 1186 (1228)
T ss_pred             cCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--
Confidence            688889999997 445699999999999999999999999999999999999999999999986 4799999999974  


Q ss_pred             HHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           98 VFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        98 i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ..+.+|.|+++++|++++.|+.+++.+
T Consensus      1187 TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1187 TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred             hhhcCCEEEEEECCEEEecccHHHHHh
Confidence            368899999999999999999998765

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=5.5e-18  Score=187.38  Aligned_cols=108  Identities=22%  Similarity=0.303  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      +++++++++.+|+. +..|+.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++   +.
T Consensus       415 ~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~  486 (530)
T PRK15064        415 EQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EG  486 (530)
T ss_pred             HHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CC
Confidence            45678899999994 5677755     469999999999999999999999999999999999999999999987   35


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~~  123 (546)
                      |||+++|++ .++.+++|++++|++|+++ +.|++++..
T Consensus       487 tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~  524 (530)
T PRK15064        487 TLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL  524 (530)
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence            999999995 7889999999999999998 889887653

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.4e-18  Score=185.72  Aligned_cols=103  Identities=32%  Similarity=0.554  Sum_probs=93.2

Q ss_pred             CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009033           18 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE   97 (546)
Q Consensus        18 gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~   97 (546)
                      ++.+-.||.||. +.-.||||||||++|||||+.||.||||||.||.||+.+...|.+.|.++.++ +|||++.|.. + 
T Consensus       589 ~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRL-S-  664 (716)
T KOG0058|consen  589 NFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRL-S-  664 (716)
T ss_pred             hCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhh-h-
Confidence            577789999997 44469999999999999999999999999999999999999999999998765 9999999995 3 


Q ss_pred             HHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           98 VFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        98 i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ..+.+|+|+++++|+++..|..+++.+
T Consensus       665 TV~~Ad~Ivvi~~G~V~E~G~h~eLl~  691 (716)
T KOG0058|consen  665 TVRHADQIVVIDKGRVVEMGTHDELLS  691 (716)
T ss_pred             HhhhccEEEEEcCCeEEecccHHHHhh
Confidence            467899999999999999999887654

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=6.7e-18  Score=178.75  Aligned_cols=102  Identities=33%  Similarity=0.490  Sum_probs=91.3

Q ss_pred             CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009033           19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV   98 (546)
Q Consensus        19 L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i   98 (546)
                      |++-.+|.+|++ .+.|||||||||++||+++.+|+|+++|||||.||+.+..++++.+.+ ...|+|+|++.|+.  ..
T Consensus       473 l~~GY~T~VGer-G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l--~l  548 (591)
T KOG0057|consen  473 LPDGYQTLVGER-GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRL--DL  548 (591)
T ss_pred             ccccchhhHhhc-ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecc--hh
Confidence            445567789874 455999999999999999999999999999999999999999999999 34689999999994  56


Q ss_pred             HhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           99 FELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        99 ~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ...||+|++|++|++...|+.+++..
T Consensus       549 l~~~DkI~~l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  549 LKDFDKIIVLDNGTVKEYGTHSELLA  574 (591)
T ss_pred             HhcCCEEEEEECCeeEEeccHHHHhh
Confidence            78999999999999999999998765

>PRK13409 putative ATPase RIL; Provisional

Probab=99.74  E-value=6.2e-18  Score=188.34  Aligned_cols=105  Identities=26%  Similarity=0.363  Sum_probs=94.1

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRT   86 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~t   86 (546)
                      ..++++++.+||.+..|+.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|
T Consensus       432 ~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t  506 (590)
T PRK13409        432 YYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREAT  506 (590)
T ss_pred             HHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence            35678999999998888755     46999999999999999999999999999999999999999999999987 4899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGET  119 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~  119 (546)
                      ||+++|++ .++..++|++++|++ ++...|..
T Consensus       507 viivsHD~-~~~~~~aDrvivl~~-~~~~~g~~  537 (590)
T PRK13409        507 ALVVDHDI-YMIDYISDRLMVFEG-EPGKHGHA  537 (590)
T ss_pred             EEEEeCCH-HHHHHhCCEEEEEcC-cceeeeec
Confidence            99999995 788999999999965 77777753

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.74  E-value=8.4e-18  Score=163.59  Aligned_cols=95  Identities=28%  Similarity=0.367  Sum_probs=84.6

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      +.++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|++++++|+||
T Consensus       106 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti  180 (207)
T PRK13539        106 LDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV  180 (207)
T ss_pred             HHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence            45788999999987777654     4699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeC
Q 009033           88 IASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      |+++|++ .++..  |+++.+..
T Consensus       181 ii~sH~~-~~~~~--~~~~~~~~  200 (207)
T PRK13539        181 IAATHIP-LGLPG--ARELDLGP  200 (207)
T ss_pred             EEEeCCc-hhhcc--CcEEeecC
Confidence            9999996 56665  98887743

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.74  E-value=1.5e-17  Score=177.78  Aligned_cols=112  Identities=30%  Similarity=0.421  Sum_probs=104.3

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.++++.++|+.+|+....++.+|+     ||+||||.|.||++|..+++||+|||||+.|+...+..+.+.+++|.
T Consensus       118 d~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk  192 (500)
T COG1129         118 DRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK  192 (500)
T ss_pred             CHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            4567788899999999996558887775     99999999999999999999999999999999999999999999999


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET  119 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~  119 (546)
                      ++|.+||+++|. ..|++++||||.+|++|+.+..++.
T Consensus       193 ~~Gv~ii~ISHr-l~Ei~~i~DritVlRDG~~v~~~~~  229 (500)
T COG1129         193 AQGVAIIYISHR-LDEVFEIADRITVLRDGRVVGTRPT  229 (500)
T ss_pred             hCCCEEEEEcCc-HHHHHHhcCEEEEEeCCEEeeeccc
Confidence            999999999999 5899999999999999999998883

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.74  E-value=1.1e-17  Score=185.93  Aligned_cols=106  Identities=28%  Similarity=0.407  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      .++++++++.+||.. .++.+     ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.   .|
T Consensus       142 ~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~t  212 (556)
T PRK11819        142 DSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GT  212 (556)
T ss_pred             HHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---Ce
Confidence            456788999999954 56654     4699999999999999999999999999999999999999999999873   49


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAA  122 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~  122 (546)
                      ||+++|++ .++.+.+|+|++|++|+++ +.|+.++.
T Consensus       213 viiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~  248 (556)
T PRK11819        213 VVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSW  248 (556)
T ss_pred             EEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence            99999995 7889999999999999986 88987754

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.74  E-value=8.8e-18  Score=203.33  Aligned_cols=113  Identities=27%  Similarity=0.438  Sum_probs=96.2

Q ss_pred             HHHHHHHHHcCC-------cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL-------~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.++++++..++       .+-.||.||. ....||||||||++|||+|+++|+||+||||||+||+.+...|.+.|+++
T Consensus      1326 eeI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265       1326 EDVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred             HHHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence            345556665544       4456999996 45679999999999999999999999999999999999999999999999


Q ss_pred             H-hCCCEEEEEecCCchHHHhhcCeEEEEeC----CeEE-EecChhHHH
Q 009033           81 S-RDGRTVIASIHQPSSEVFELFDRLYLLSG----GKTV-YFGETSAAF  123 (546)
Q Consensus        81 ~-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~----G~~v-~~G~~~~~~  123 (546)
                      . .+|+|+|+++|++ + ..+.+|+|++|++    |+++ ..|+.+++.
T Consensus      1405 ~~~~~~TvIiIaHRl-s-ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1405 KDKADKTIITIAHRI-A-SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred             hccCCCEEEEEechH-H-HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence            7 4689999999996 3 4678999999998    9955 899998764

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.74  E-value=2.2e-17  Score=168.08  Aligned_cols=90  Identities=23%  Similarity=0.310  Sum_probs=80.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L-~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      ....||||||||+.||++|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||+++|++ .++ ..+|++++|+
T Consensus       156 ~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~-~~~-~~~d~i~~l~  232 (282)
T cd03291         156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILH  232 (282)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCh-HHH-HhCCEEEEEE
Confidence            34689999999999999999999999999999999999999999864 5664 478999999996 455 6899999999


Q ss_pred             CCeEEEecChhHHH
Q 009033          110 GGKTVYFGETSAAF  123 (546)
Q Consensus       110 ~G~~v~~G~~~~~~  123 (546)
                      +|++++.|+++++.
T Consensus       233 ~G~i~~~g~~~~~~  246 (282)
T cd03291         233 EGSSYFYGTFSELQ  246 (282)
T ss_pred             CCEEEEECCHHHHH
Confidence            99999999988754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.74  E-value=1.1e-17  Score=158.61  Aligned_cols=86  Identities=30%  Similarity=0.472  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g-~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      ||||||||++||++++.+|++++|||||+|||+.++..+.+.++++++++ .|||+++|++ .++.+++|++++|+++-.
T Consensus        72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~  150 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPG  150 (177)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCc
Confidence            99999999999999999999999999999999999999999999998765 9999999995 778889999999998766


Q ss_pred             EEe--cChhH
Q 009033          114 VYF--GETSA  121 (546)
Q Consensus       114 v~~--G~~~~  121 (546)
                      ++.  |++..
T Consensus       151 ~~~~~~~~~~  160 (177)
T cd03222         151 VYGIASQPKG  160 (177)
T ss_pred             cceeccCCcc
Confidence            655  65543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.3e-17  Score=187.86  Aligned_cols=109  Identities=29%  Similarity=0.426  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++.++++.+++. +..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++  .| 
T Consensus       407 ~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-  478 (638)
T PRK10636        407 EQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-  478 (638)
T ss_pred             HHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-
Confidence            45678899999996 46777654     69999999999999999999999999999999999999999999988  34 


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE  124 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~~~  124 (546)
                      |||+++|++ ..+.+++|++++|++|+++ +.|+.++..+
T Consensus       479 tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  517 (638)
T PRK10636        479 ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ  517 (638)
T ss_pred             eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence            999999995 7889999999999999997 8899887543

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=3.1e-17  Score=157.38  Aligned_cols=122  Identities=29%  Similarity=0.498  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +-.+.+++.++.+++.+ ..++.+.    .|+|||||||..|+..++.+|++.+||||-||||..+-..|-+.++.+...
T Consensus       118 ~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~  193 (251)
T COG0396         118 EFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE  193 (251)
T ss_pred             HHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC
Confidence            44677888999999986 7777765    489999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEecCCchHHHhhc--CeEEEEeCCeEEEecChhHHHHHHHHcCCCC
Q 009033           84 GRTVIASIHQPSSEVFELF--DRLYLLSGGKTVYFGETSAAFEFFAQAGFPC  133 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~--D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~  133 (546)
                      |++++++||.  .++.++.  |++.+|.+|+|+..|.+ ++.+.++..||.|
T Consensus       194 ~~~~liITHy--~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~  242 (251)
T COG0396         194 GRGVLIITHY--QRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW  242 (251)
T ss_pred             CCeEEEEecH--HHHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence            9999999998  4788887  99999999999999999 7888888888865

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.73  E-value=1.1e-17  Score=161.45  Aligned_cols=92  Identities=29%  Similarity=0.390  Sum_probs=81.0

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      ++++++++.+||++..++.+     ..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.||
T Consensus       106 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti  180 (198)
T TIGR01189       106 RTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV  180 (198)
T ss_pred             HHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            45788999999998877755     4699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEE
Q 009033           88 IASIHQPSSEVFELFDRLYL  107 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~l  107 (546)
                      |+++|++..   -.+|+++.
T Consensus       181 i~~sH~~~~---~~~~~~~~  197 (198)
T TIGR01189       181 LLTTHQDLG---LVEARELR  197 (198)
T ss_pred             EEEEccccc---ccceEEee
Confidence            999999732   34566654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.73  E-value=9.4e-18  Score=194.87  Aligned_cols=121  Identities=26%  Similarity=0.445  Sum_probs=113.6

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++.+.++.++.+++.+||.+.+|+.+|     .+|||+|||+++|.+++.+|++++|||||+|+||.+++++.++++++.
T Consensus       671 ~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~  745 (885)
T KOG0059|consen  671 PRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLR  745 (885)
T ss_pred             ChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence            556788889999999999999999876     499999999999999999999999999999999999999999999999


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ  128 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~  128 (546)
                      ++|+.||+|+|. .+|...+|||+.+|.+|+....|++++++..|..
T Consensus       746 k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~  791 (885)
T KOG0059|consen  746 KNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS  791 (885)
T ss_pred             hcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence            988899999999 5899999999999999999999999999877643

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=1.9e-17  Score=186.52  Aligned_cols=106  Identities=25%  Similarity=0.412  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      +.+++++++.+|+. +..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++   +.
T Consensus       126 ~~~~~~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~  197 (638)
T PRK10636        126 RSRAASLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QG  197 (638)
T ss_pred             HHHHHHHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CC
Confidence            46788999999997 56777665     59999999999999999999999999999999999999999998876   46


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSA  121 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~  121 (546)
                      |||+++|++ ..+.+++|++++|++|++. |.|+.+.
T Consensus       198 tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~  233 (638)
T PRK10636        198 TLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNYSS  233 (638)
T ss_pred             eEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence            999999995 7889999999999999996 6777664

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.73  E-value=1.9e-17  Score=162.25  Aligned_cols=100  Identities=28%  Similarity=0.382  Sum_probs=81.5

Q ss_pred             HHHHHHHcCCccccc-------ccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH--HHHHH
Q 009033           10 VERTIIEMGLQDCAD-------TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ--TLRCL   80 (546)
Q Consensus        10 v~~~l~~lgL~~~~~-------~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~--~L~~l   80 (546)
                      .+++++.++|.+..+       +..+ ..+..||||||||++||++|+.+|++|+|||||+|||+.++..+++  .++.+
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~  188 (218)
T cd03290         110 YKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL  188 (218)
T ss_pred             HHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH
Confidence            355666677654322       1222 2457899999999999999999999999999999999999999998  67777


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      .++|.|+|+++|++ .++ ..+|++++|++|.
T Consensus       189 ~~~~~tii~~sH~~-~~~-~~~d~i~~l~~G~  218 (218)
T cd03290         189 QDDKRTLVLVTHKL-QYL-PHADWIIAMKDGS  218 (218)
T ss_pred             hcCCCEEEEEeCCh-HHH-hhCCEEEEecCCC
Confidence            77789999999997 455 5799999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.72  E-value=1.9e-17  Score=200.35  Aligned_cols=101  Identities=30%  Similarity=0.525  Sum_probs=88.4

Q ss_pred             HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+.++++.+++.+.       .||.+|. ....||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|+++
T Consensus       547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~  625 (1466)
T PTZ00265        547 SEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL  625 (1466)
T ss_pred             HHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence            457777777776543       4777876 46789999999999999999999999999999999999999999999999


Q ss_pred             Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033           81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  111 (546)
                      .+ +|+|+|+++|++ +.+ +.+|+|++|++|
T Consensus       626 ~~~~g~TvIiIsHrl-s~i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        626 KGNENRITIIIAHRL-STI-RYANTIFVLSNR  655 (1466)
T ss_pred             hhcCCCEEEEEeCCH-HHH-HhCCEEEEEeCC
Confidence            86 689999999997 444 789999999986

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.72  E-value=2.3e-17  Score=160.03  Aligned_cols=80  Identities=24%  Similarity=0.390  Sum_probs=72.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      ....||||||||++||++|+.+|++++|||||+|||+.++..+.+ +++++.++|+|||+++|++ ..+.. +|++++|+
T Consensus       124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~  201 (204)
T cd03250         124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLD  201 (204)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEe
Confidence            457899999999999999999999999999999999999999998 5677766789999999996 56666 99999999


Q ss_pred             CCe
Q 009033          110 GGK  112 (546)
Q Consensus       110 ~G~  112 (546)
                      +|+
T Consensus       202 ~G~  204 (204)
T cd03250         202 NGR  204 (204)
T ss_pred             CCC
Confidence            985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.72  E-value=2.7e-17  Score=182.68  Aligned_cols=107  Identities=29%  Similarity=0.422  Sum_probs=92.1

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      .+++++++.+|+.. .++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.   .||
T Consensus       141 ~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~---~tv  211 (552)
T TIGR03719       141 RKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP---GTV  211 (552)
T ss_pred             HHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC---CeE
Confidence            45667788888853 45544     5699999999999999999999999999999999999999999998873   599


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHHHH
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE  124 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~~~  124 (546)
                      |+++|++ ..+...+|++++|++|+++ +.|+.++..+
T Consensus       212 IiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~  248 (552)
T TIGR03719       212 VAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWLE  248 (552)
T ss_pred             EEEeCCH-HHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence            9999995 7888999999999999976 7798876543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.72  E-value=1.6e-17  Score=156.82  Aligned_cols=75  Identities=40%  Similarity=0.704  Sum_probs=70.4

Q ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033           35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      ||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++.+ ++|+|+++|++ .++.. +|++++|++|+
T Consensus        97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~  171 (171)
T cd03228          97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR  171 (171)
T ss_pred             hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence            999999999999999999999999999999999999999999999964 79999999996 56766 99999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.72  E-value=2.2e-17  Score=183.89  Aligned_cols=98  Identities=32%  Similarity=0.457  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      +++++++++.+||++..|+.++     +|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ |.|
T Consensus       190 ~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~t  263 (590)
T PRK13409        190 RGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKY  263 (590)
T ss_pred             HHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCE
Confidence            4678899999999988888664     6999999999999999999999999999999999999999999999988 999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCC
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G  111 (546)
                      ||+++|++ +++..++|++++|++|
T Consensus       264 vIivsHd~-~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        264 VLVVEHDL-AVLDYLADNVHIAYGE  287 (590)
T ss_pred             EEEEeCCH-HHHHHhCCEEEEEeCC
Confidence            99999995 7899999999999874

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.72  E-value=3.6e-17  Score=184.45  Aligned_cols=105  Identities=27%  Similarity=0.439  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      +.+++++++.+|+..  ++.     +..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++.   .|
T Consensus       136 ~~~~~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~t  205 (635)
T PRK11147        136 ENRINEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GS  205 (635)
T ss_pred             HHHHHHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CE
Confidence            457888999999963  554     45699999999999999999999999999999999999999999999883   59


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAA  122 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~  122 (546)
                      ||+++|++ ..+.+.+|+|++|++|+++ |.|+.++.
T Consensus       206 vlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~  241 (635)
T PRK11147        206 IIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNYDQY  241 (635)
T ss_pred             EEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence            99999995 7888999999999999997 56877653

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.72  E-value=4.5e-17  Score=180.80  Aligned_cols=106  Identities=23%  Similarity=0.261  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHcCCcccccccccCc--ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNW--HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~--~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      ++.+++.++.+++.+..+.  ++.  ....||||||||++|||+++.+|++|+||||||+||+.+...+.+.|.+..+ +
T Consensus       422 ~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~  499 (547)
T PRK10522        422 PALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEM  499 (547)
T ss_pred             HHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            4567888999998764432  221  1247999999999999999999999999999999999999999999987654 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF  116 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~  116 (546)
                      |+|+|+++|++  +..+.+|++++|++|+++..
T Consensus       500 ~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        500 GKTIFAISHDD--HYFIHADRLLEMRNGQLSEL  530 (547)
T ss_pred             CCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence            89999999997  45788999999999999866

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.72  E-value=3.1e-17  Score=189.19  Aligned_cols=110  Identities=26%  Similarity=0.367  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            6 KRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ..++++ .++.+||.+. .|+.+     ..|||||||||.||++|..+|  ++++|||||+|||+..+.++.+.|+++++
T Consensus       466 i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~  539 (943)
T PRK00349        466 IRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD  539 (943)
T ss_pred             HHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh
Confidence            345554 6888899865 67755     469999999999999999997  99999999999999999999999999988


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~  123 (546)
                      +|.|||+++|++ .++ ..+|+|++|      ++|++++.|+++++.
T Consensus       540 ~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~  584 (943)
T PRK00349        540 LGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM  584 (943)
T ss_pred             CCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence            899999999996 555 469999999      999999999998864

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.71  E-value=5.1e-17  Score=180.62  Aligned_cols=109  Identities=24%  Similarity=0.291  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHcCCcccccccc-cCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHH-HHHhC
Q 009033            6 KRTLVERTIIEMGLQDCADTVI-GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSRD   83 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~i-g~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~-~l~~~   83 (546)
                      .++++++.++.+++.+..+..- |-.....||||||||++|||+++.+|++++|||||++||+.+..++.+.+. .+..+
T Consensus       441 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~  520 (555)
T TIGR01194       441 SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ  520 (555)
T ss_pred             hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence            3456788899999876544321 222335799999999999999999999999999999999999999998664 56567


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF  116 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~  116 (546)
                      |+|+|+++|++ + ..+.+|+|++|++|+++..
T Consensus       521 ~~tiiiisH~~-~-~~~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       521 GKTIIIISHDD-Q-YFELADQIIKLAAGCIVKD  551 (555)
T ss_pred             CCEEEEEeccH-H-HHHhCCEEEEEECCEEEEe
Confidence            89999999997 3 5678999999999998754

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.71  E-value=5.4e-17  Score=149.14  Aligned_cols=115  Identities=32%  Similarity=0.425  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~   83 (546)
                      +.++...+.+++..++..   ++ +..++.+|||++||+.|||-|++.|+++|+||||.|||..-+.+++++++.|.. -
T Consensus       126 ~iR~~a~~WL~~VEI~~~---Ri-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l  201 (258)
T COG4107         126 NIRAEAQDWLEEVEIDLD---RI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL  201 (258)
T ss_pred             hHHHHHHHHHHhcccCcc---cc-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc
Confidence            345667788998887532   22 236789999999999999999999999999999999999999999999999986 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |.++++++|+ ..-+.-++||.++|.+|+++.+|-++++++
T Consensus       202 ~la~viVTHD-l~VarLla~rlmvmk~g~vve~GLTDrvLD  241 (258)
T COG4107         202 GLAVVIVTHD-LAVARLLADRLMVMKQGQVVESGLTDRVLD  241 (258)
T ss_pred             CceEEEEech-hHHHHHhhhcceeecCCCEecccccccccc
Confidence            8999999999 467777899999999999999998887643

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.71  E-value=2.5e-17  Score=172.98  Aligned_cols=108  Identities=29%  Similarity=0.469  Sum_probs=100.2

Q ss_pred             cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch
Q 009033           17 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS   96 (546)
Q Consensus        17 lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~   96 (546)
                      +.|.+-.||.||+ ...+||||||||+.+||+|-.+|.+++||||-|+||......+.+.|.++.++|.|+|+++|.|  
T Consensus       456 l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP--  532 (580)
T COG4618         456 LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP--  532 (580)
T ss_pred             HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH--
Confidence            3577789999997 4567999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             HHHhhcCeEEEEeCCeEEEecChhHHHHHHH
Q 009033           97 EVFELFDRLYLLSGGKTVYFGETSAAFEFFA  127 (546)
Q Consensus        97 ~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~  127 (546)
                      .+....|+|++|++|++-.+|+.++++....
T Consensus       533 s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~  563 (580)
T COG4618         533 SALASVDKILVLQDGRIAAFGPREEVLAKVL  563 (580)
T ss_pred             HHHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence            4789999999999999999999999887653

>PLN03073 ABC transporter F family; Provisional

Probab=99.71  E-value=6e-17  Score=183.75  Aligned_cols=109  Identities=26%  Similarity=0.381  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++.++++.+||.+ ..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++.  .| 
T Consensus       604 ~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-  675 (718)
T PLN03073        604 EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-  675 (718)
T ss_pred             HHHHHHHHHHCCCChHHhcCCc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-
Confidence            356788999999973 566644     579999999999999999999999999999999999999998888765  34 


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE  124 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~~~  124 (546)
                      |||+++|++ ..+..++|++++|.+|+++ +.|+.++..+
T Consensus       676 tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~  714 (718)
T PLN03073        676 GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKK  714 (718)
T ss_pred             EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence            999999995 7888999999999999998 7888776443

>PLN03232 ABC transporter C family member; Provisional

Probab=99.71  E-value=5.3e-17  Score=197.88  Aligned_cols=113  Identities=20%  Similarity=0.306  Sum_probs=96.6

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+.++++..+|.+       -.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+...+.+.|++.
T Consensus      1339 eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232       1339 ADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred             HHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            45666777766643       34777875 44569999999999999999999999999999999999999999999987


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      . +++|+|+++|++ +. ...+|+|++|++|+++..|+++++.+
T Consensus      1418 ~-~~~TvI~IAHRl-~t-i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232       1418 F-KSCTMLVIAHRL-NT-IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred             c-CCCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence            5 479999999996 34 45699999999999999999998753

>PLN03073 ABC transporter F family; Provisional

Probab=99.70  E-value=8.4e-17  Score=182.57  Aligned_cols=107  Identities=25%  Similarity=0.384  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+++.++++.+|+. +..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++   |.
T Consensus       321 ~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~  392 (718)
T PLN03073        321 EARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PK  392 (718)
T ss_pred             HHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CC
Confidence            45566777778885 4455544     569999999999999999999999999999999999999999999887   67


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAA  122 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~  122 (546)
                      |||+++|+. ..+.+.+|++++|++|++. |.|+.++.
T Consensus       393 tviivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~~  429 (718)
T PLN03073        393 TFIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDTF  429 (718)
T ss_pred             EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            999999994 7888999999999999996 67876643

>PLN03130 ABC transporter C family member; Provisional

Probab=99.70  E-value=8.9e-17  Score=196.38  Aligned_cols=113  Identities=22%  Similarity=0.301  Sum_probs=96.5

Q ss_pred             HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~-------~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+.++++..++.       +-.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+...|.+.|++.
T Consensus      1342 eei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~ 1420 (1622)
T PLN03130       1342 ADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1420 (1622)
T ss_pred             HHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            4456666666553       346788876 44579999999999999999999999999999999999999999999998


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      . +|+|+|+++|++ +. ...+|+|++|++|+++..|+++++.+
T Consensus      1421 ~-~~~TvI~IAHRL-~t-I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1421 F-KSCTMLIIAHRL-NT-IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred             C-CCCEEEEEeCCh-HH-HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            5 479999999996 33 45699999999999999999998764

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.70  E-value=8.5e-17  Score=185.29  Aligned_cols=104  Identities=29%  Similarity=0.382  Sum_probs=92.2

Q ss_pred             HHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 009033           13 TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA   89 (546)
Q Consensus        13 ~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~   89 (546)
                      .+..+||... .++.     +.+|||||+||+.||++|+.+|  ++++|||||+|||+.++.++++.|++++++|.|||+
T Consensus       470 ~L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIv  544 (924)
T TIGR00630       470 FLIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIV  544 (924)
T ss_pred             hHhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            3677788654 4654     4579999999999999999986  899999999999999999999999999988999999


Q ss_pred             EecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033           90 SIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF  123 (546)
Q Consensus        90 ~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~  123 (546)
                      ++|++ .++ ..+|++++|      ++|++++.|+++++.
T Consensus       545 VeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~  582 (924)
T TIGR00630       545 VEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL  582 (924)
T ss_pred             EECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence            99996 455 589999999      899999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.70  E-value=5.4e-17  Score=157.03  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=80.3

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      ..++++++.+++.+..++.+     ..||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|.||
T Consensus       106 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~ti  180 (200)
T PRK13540        106 VGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV  180 (200)
T ss_pred             HHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEE
Confidence            46788999999987777654     4699999999999999999999999999999999999999999999998789999


Q ss_pred             EEEecCCchHHHhhcCeEE
Q 009033           88 IASIHQPSSEVFELFDRLY  106 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~  106 (546)
                      |+++|++.  ....+|...
T Consensus       181 ii~sh~~~--~~~~~d~~~  197 (200)
T PRK13540        181 LLTSHQDL--PLNKADYEE  197 (200)
T ss_pred             EEEeCCch--hccccchhh
Confidence            99999963  345566543

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.69  E-value=8e-17  Score=151.39  Aligned_cols=75  Identities=40%  Similarity=0.599  Sum_probs=69.0

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  111 (546)
                      .+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++   +.|+|+++|++ . ..+.+|++++|++|
T Consensus        89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~-~-~~~~~d~i~~l~~~  163 (166)
T cd03223          89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP-S-LWKFHDRVLDLDGE  163 (166)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh-h-HHhhCCEEEEEcCC
Confidence            4679999999999999999999999999999999999999999999987   58999999997 3 45799999999865

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.69  E-value=6.4e-17  Score=151.35  Aligned_cols=112  Identities=24%  Similarity=0.416  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+.+++++|+..||.+.+|...|.     ||.||||++.||+.++++|++|+||||++|+--....+.-++|+.++.. 
T Consensus       123 ~e~~ride~La~igL~~~~~~~A~~-----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~-  196 (249)
T COG4674         123 EERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-  196 (249)
T ss_pred             hHHHHHHHHHHHcccchhhhhhhhh-----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-
Confidence            4567899999999999999998775     9999999999999999999999999999999999999999999999864 


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++|+++.|| ...+.+++|+|.+|++|.+...|+.+++.
T Consensus       197 hsilVVEHD-M~Fvr~~A~~VTVlh~G~VL~EGsld~v~  234 (249)
T COG4674         197 HSILVVEHD-MGFVREIADKVTVLHEGSVLAEGSLDEVQ  234 (249)
T ss_pred             ceEEEEecc-HHHHHHhhheeEEEeccceeecccHHHhh
Confidence            799999999 58999999999999999999999988763

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.69  E-value=8.2e-17  Score=147.80  Aligned_cols=77  Identities=32%  Similarity=0.449  Sum_probs=71.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  111 (546)
                      ..+||+||+||++||++|+.+|+++++||||+|||+.++..+.+.|+++   ++|+++++|++ +++.+++|++++|++|
T Consensus        68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g  143 (144)
T cd03221          68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDG  143 (144)
T ss_pred             EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCC
Confidence            3459999999999999999999999999999999999999999999987   47999999995 7888999999999998


Q ss_pred             e
Q 009033          112 K  112 (546)
Q Consensus       112 ~  112 (546)
                      +
T Consensus       144 ~  144 (144)
T cd03221         144 K  144 (144)
T ss_pred             C
Confidence            5

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=8.2e-17  Score=165.74  Aligned_cols=102  Identities=36%  Similarity=0.516  Sum_probs=92.0

Q ss_pred             CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009033           19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV   98 (546)
Q Consensus        19 L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i   98 (546)
                      |.+-.|+.||....+ |||||||||+|||+++.+|+||++||.||.||+.+..++...|++++ .|+|.+++.|..+ . 
T Consensus       385 lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls-t-  460 (497)
T COG5265         385 LPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS-T-  460 (497)
T ss_pred             Cchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh-h-
Confidence            566789999986655 89999999999999999999999999999999999999999999998 5789999999964 3 


Q ss_pred             HhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           99 FELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        99 ~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .--+|.|++|++|++++.|..++++.
T Consensus       461 i~~adeiivl~~g~i~erg~h~~ll~  486 (497)
T COG5265         461 IIDADEIIVLDNGRIVERGTHEELLA  486 (497)
T ss_pred             ccCCceEEEeeCCEEEecCcHHHHHH
Confidence            45699999999999999999988764

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.69  E-value=1.7e-16  Score=176.33  Aligned_cols=104  Identities=21%  Similarity=0.295  Sum_probs=89.7

Q ss_pred             HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            9 LVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         9 ~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      +++++++.+||.+ ..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.  | ||
T Consensus       422 ~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~v  493 (552)
T TIGR03719       422 PSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CA  493 (552)
T ss_pred             HHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eE
Confidence            4567899999964 566655     4699999999999999999999999999999999999999999999983  3 89


Q ss_pred             EEEecCCchHHHhhcCeEEEEeC-CeEE-EecChhH
Q 009033           88 IASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETSA  121 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~-G~~v-~~G~~~~  121 (546)
                      |+++|++ ..+.+++|++++|++ |+++ +.|+.++
T Consensus       494 iivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~~  528 (552)
T TIGR03719       494 VVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYSE  528 (552)
T ss_pred             EEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence            9999995 788899999999986 6876 5566543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.69  E-value=1.6e-16  Score=194.06  Aligned_cols=113  Identities=23%  Similarity=0.309  Sum_probs=96.8

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+.++++..+|.+       -.||.+|. ....||||||||++|||+|+++|+||+||||||+||+.+...+.+.|++.
T Consensus      1389 eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957      1389 EEVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred             HHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            44666777776653       35788875 44569999999999999999999999999999999999999999999987


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      . +++|||+++|++  +....+|+|++|++|+++..|+++++.+
T Consensus      1468 ~-~~~TvI~IAHRl--~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957      1468 F-EDCTVLTIAHRL--NTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred             c-CCCEEEEEecCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            5 479999999996  3456799999999999999999998754

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.69  E-value=1.7e-16  Score=176.37  Aligned_cols=104  Identities=19%  Similarity=0.277  Sum_probs=90.0

Q ss_pred             HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            9 LVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         9 ~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      .++++++.+||.+ ..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.  | ||
T Consensus       424 ~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tv  495 (556)
T PRK11819        424 PSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CA  495 (556)
T ss_pred             HHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eE
Confidence            4567899999964 566655     4699999999999999999999999999999999999999999999883  4 89


Q ss_pred             EEEecCCchHHHhhcCeEEEEeC-CeEE-EecChhH
Q 009033           88 IASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETSA  121 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~-G~~v-~~G~~~~  121 (546)
                      |+++|++ .++.+++|++++|++ |++. +.|+.++
T Consensus       496 i~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~  530 (556)
T PRK11819        496 VVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE  530 (556)
T ss_pred             EEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence            9999995 789999999999985 7876 5676554

>PLN03232 ABC transporter C family member; Provisional

Probab=99.68  E-value=1.3e-16  Score=194.40  Aligned_cols=114  Identities=28%  Similarity=0.323  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HH
Q 009033            7 RTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LR   78 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~   78 (546)
                      +++.+++++..+|.       +-.+|.||+. ...||||||||++|||++.++|+|++||||||+||+.++.++++. ++
T Consensus       707 ~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~  785 (1495)
T PLN03232        707 SERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK  785 (1495)
T ss_pred             HHHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence            34566666666653       3347889874 456999999999999999999999999999999999999999765 55


Q ss_pred             HHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        79 ~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+ .+|+|+|++||++  .....+|+|++|++|+++..|+.+++.+
T Consensus       786 ~~-l~~kT~IlvTH~~--~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~  828 (1495)
T PLN03232        786 DE-LKGKTRVLVTNQL--HFLPLMDRIILVSEGMIKEEGTFAELSK  828 (1495)
T ss_pred             hh-hcCCEEEEEECCh--hhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence            43 3679999999997  3567899999999999999999988753

>PTZ00243 ABC transporter; Provisional

Probab=99.68  E-value=2.3e-16  Score=192.42  Aligned_cols=114  Identities=19%  Similarity=0.274  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhC-CCeEEEeCCCCCCCHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLR   78 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~-P~il~LDEPtsgLD~~~~~~v~~~L~   78 (546)
                      ++.+.++++..||.+.       .||.+|. ....||||||||++|||+|+++ |+||+||||||+||+.+...+.+.|+
T Consensus      1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243       1412 SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred             HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            3567778888877543       5788875 4456999999999999999996 89999999999999999999999999


Q ss_pred             HHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        79 ~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +.. +++|||+++|++  +....+|+|++|++|+++..|+++++.+
T Consensus      1491 ~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243       1491 SAF-SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred             HHC-CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            864 469999999996  4567899999999999999999998753

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.68  E-value=1.3e-16  Score=153.84  Aligned_cols=92  Identities=23%  Similarity=0.237  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      .++++++++.+++.+..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++..++|+|
T Consensus       101 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~t  175 (195)
T PRK13541        101 AETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGI  175 (195)
T ss_pred             HHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence            346778889999988777754     469999999999999999999999999999999999999999999887778999


Q ss_pred             EEEEecCCchHHHhhcCeE
Q 009033           87 VIASIHQPSSEVFELFDRL  105 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v  105 (546)
                      +|+++|++ .++ ..+|-+
T Consensus       176 iii~sh~~-~~i-~~~~~~  192 (195)
T PRK13541        176 VLLSSHLE-SSI-KSAQIL  192 (195)
T ss_pred             EEEEeCCc-ccc-chhhee
Confidence            99999997 333 345554

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.67  E-value=2.3e-16  Score=168.65  Aligned_cols=111  Identities=28%  Similarity=0.483  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++..++.+++.++.|++.. -.++.++     .||||.+|||.||+.|.++|++|+|||||.|.|.-+..+|.++++++
T Consensus       373 ~~~~e~~~~~~~~~~l~Ik~~s~~~~v~-----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~l  447 (500)
T COG1129         373 DRRKERALAERYIRRLRIKTPSPEQPIG-----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL  447 (500)
T ss_pred             ChHHHHHHHHHHHHhcCcccCCccchhh-----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHH
Confidence            34556678899999999863 4555554     69999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE  118 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~  118 (546)
                      +++|++||+++-+ .+|+..+||||++|++|+++..=+
T Consensus       448 A~~G~ail~iSSE-lpEll~~~DRIlVm~~Gri~~e~~  484 (500)
T COG1129         448 AAEGKAILMISSE-LPELLGLSDRILVMREGRIVGELD  484 (500)
T ss_pred             HHCCCEEEEEeCC-hHHHHhhCCEEEEEECCEEEEEec
Confidence            9999999999999 589999999999999999987433

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.67  E-value=2.6e-16  Score=146.28  Aligned_cols=77  Identities=47%  Similarity=0.707  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033           35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      |||||+||++||++++.+|++++|||||+|||..++..+.+.++++.+.++|+++++|++ +++...+|+++++++|+
T Consensus        81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~  157 (157)
T cd00267          81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK  157 (157)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence            999999999999999999999999999999999999999999999987789999999995 77888899999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.2e-16  Score=166.27  Aligned_cols=105  Identities=31%  Similarity=0.472  Sum_probs=94.5

Q ss_pred             HcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 009033           16 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS   95 (546)
Q Consensus        16 ~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~   95 (546)
                      .++..+-.+|+||.+..| |||||||||+|||+++.+|.|++|||.||.||..+...+...|.++++ |+|.|++.|..+
T Consensus       657 Il~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS  734 (790)
T KOG0056|consen  657 ILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS  734 (790)
T ss_pred             HhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh
Confidence            367888899999986665 999999999999999999999999999999999999999999999997 588899999964


Q ss_pred             hHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           96 SEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        96 ~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                       .+ -.+|.|+++++|++++.|..++++.
T Consensus       735 -Ti-vnAD~ILvi~~G~IvErG~HeeLl~  761 (790)
T KOG0056|consen  735 -TI-VNADLILVISNGRIVERGRHEELLK  761 (790)
T ss_pred             -he-ecccEEEEEeCCeEeecCcHHHHHh
Confidence             44 4599999999999999999988654

>PLN03130 ABC transporter C family member; Provisional

Probab=99.67  E-value=3e-16  Score=191.84  Aligned_cols=114  Identities=26%  Similarity=0.292  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLR   78 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~   78 (546)
                      +++.+++++..+|.+       --+|.||+. ...||||||||++||||+..+|+|++||||||+||+.++.++++ .++
T Consensus       707 ~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~  785 (1622)
T PLN03130        707 PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK  785 (1622)
T ss_pred             HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhh
Confidence            456777777776643       347889874 45699999999999999999999999999999999999998875 565


Q ss_pred             HHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           79 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        79 ~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+. +|+|+|++||++  +....+|+|++|++|+++..|+.+++.+
T Consensus       786 ~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~  828 (1622)
T PLN03130        786 DEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELSN  828 (1622)
T ss_pred             HHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence            553 579999999996  4578899999999999999999988753

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.67  E-value=4.7e-16  Score=163.53  Aligned_cols=111  Identities=32%  Similarity=0.406  Sum_probs=103.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +.++.+++++++.+..||.--.|.+|++     ||-||||||.|-++|..+|++|||||||+-|-|....+++++|++++
T Consensus       113 ~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~  187 (501)
T COG3845         113 DRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA  187 (501)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            4567788999999999999888887765     99999999999999999999999999999999999999999999999


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE  118 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~  118 (546)
                      ++|+|||++||- ..|+.+++||+.+|++|+++-.-+
T Consensus       188 ~~G~tIi~ITHK-L~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         188 AEGKTIIFITHK-LKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HCCCEEEEEecc-HHHHHHhhCeeEEEeCCeEEeeec
Confidence            999999999999 589999999999999999876655

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.67  E-value=3.7e-16  Score=190.32  Aligned_cols=114  Identities=23%  Similarity=0.325  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++.+.++++..+|.+       -.|+.||+ ....||||||||++|||+|+++|+||+|||||++||..+...+.+.|++
T Consensus      1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271      1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred             HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            456778888888753       35777875 4456999999999999999999999999999999999999999999998


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ..+ ++|||+++|.+  +....+|+|++|++|+++..|+++++.+
T Consensus      1399 ~~~-~~TvI~IaHRl--~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1399 SFS-NCTVILSEHRV--EALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             HcC-CCEEEEEecCH--HHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            754 69999999996  3456799999999999999999988753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.66  E-value=2.3e-16  Score=174.43  Aligned_cols=98  Identities=38%  Similarity=0.600  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++.++++++..++.+       -.||.+|+ ....||||||||++|||+|+++|++++||||||+||+.+..++.+.|++
T Consensus       425 ~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~  503 (529)
T TIGR02857       425 DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA  503 (529)
T ss_pred             HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence            355677778777754       24788876 4567999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLL  108 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL  108 (546)
                      +. +|+|+|+++|++ + ..+.+|+|++|
T Consensus       504 ~~-~~~t~i~itH~~-~-~~~~~d~i~~l  529 (529)
T TIGR02857       504 LA-QGRTVLLVTHRL-A-LAERADRIVVL  529 (529)
T ss_pred             hc-CCCEEEEEecCH-H-HHHhCCEEEeC
Confidence            85 579999999997 3 35789999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.66  E-value=6e-16  Score=178.69  Aligned_cols=108  Identities=30%  Similarity=0.383  Sum_probs=95.7

Q ss_pred             HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            9 LVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         9 ~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..+.++.+||.. ..++.+     ..||||||||+.||++|+.+|   ++++|||||+|||+.+...+++.|+++.++|
T Consensus       809 ~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G  883 (943)
T PRK00349        809 RKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKG  883 (943)
T ss_pred             HHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            3457888999976 456644     569999999999999999999   9999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF  123 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~  123 (546)
                      .|||+++|++ ..+ ..+|+++.|      ++|++++.|+++++.
T Consensus       884 ~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~  926 (943)
T PRK00349        884 NTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA  926 (943)
T ss_pred             CEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence            9999999996 444 689999999      799999999998764

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.66  E-value=6.7e-16  Score=185.49  Aligned_cols=112  Identities=27%  Similarity=0.413  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHH---hCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEIL---MRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~---~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +..+++ ++++.+||.+. .++.+     .+||||||||+.||++|+   .+|++++|||||+|||+.+..++++.|+++
T Consensus       785 ~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L  858 (1809)
T PRK00635        785 SIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL  858 (1809)
T ss_pred             HHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            344556 47889999875 67644     569999999999999998   699999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEe------CCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLS------GGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~------~G~~v~~G~~~~~~~  124 (546)
                      +++|.|||+++|++ ..+ +.+|++++|.      +|+++..|+++++..
T Consensus       859 ~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        859 THQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             HhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            98899999999996 556 8999999996      799999999988653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.65  E-value=5.9e-16  Score=174.66  Aligned_cols=106  Identities=26%  Similarity=0.308  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      ...+.++++.+++. +..++.++     .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++   +.
T Consensus       417 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~  488 (635)
T PRK11147        417 PRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QG  488 (635)
T ss_pred             HHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC
Confidence            34577889999985 46677554     69999999999999999999999999999999999999999999887   35


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEe-CCeEEE-ecChhH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLS-GGKTVY-FGETSA  121 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~-~G~~v~-~G~~~~  121 (546)
                      |||+++|+. ..+..++|+++++. +|++.. .|+.++
T Consensus       489 tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~  525 (635)
T PRK11147        489 TVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD  525 (635)
T ss_pred             eEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence            999999994 78889999999998 798854 576665

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.64  E-value=1.4e-15  Score=148.63  Aligned_cols=92  Identities=23%  Similarity=0.233  Sum_probs=79.4

Q ss_pred             HHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033           15 IEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus        15 ~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~----------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..++.+..++     .+..||||||||+++|++|+.          +|++++|||||+|||+.+...+.+.|++++++|
T Consensus       109 ~~g~l~~~l~~-----~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~  183 (213)
T cd03279         109 PQGEFDRFLAR-----PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN  183 (213)
T ss_pred             hhcchHHHhcC-----CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC
Confidence            33445555555     445799999999999999985          578999999999999999999999999998779


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      .|+|+++|++ +.+...+|++.++++|-
T Consensus       184 ~tii~itH~~-~~~~~~~~~i~~~~~~~  210 (213)
T cd03279         184 RMVGVISHVE-ELKERIPQRLEVIKTPG  210 (213)
T ss_pred             CEEEEEECch-HHHHhhCcEEEEEecCC
Confidence            9999999996 67888899999999874

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.63  E-value=1.5e-15  Score=182.61  Aligned_cols=102  Identities=25%  Similarity=0.459  Sum_probs=91.9

Q ss_pred             HHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 009033           14 IIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS   90 (546)
Q Consensus        14 l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~   90 (546)
                      |..+||.+. .|+.+     .+|||||+||+.||++|..+|  ++++|||||+|||+.++..+.+.|++++++|.|||++
T Consensus       460 L~~vGL~~L~ldR~~-----~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvV  534 (1809)
T PRK00635        460 LIDLGLPYLTPERAL-----ATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLV  534 (1809)
T ss_pred             HHhccccCCCCCCch-----hhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            456788865 56655     469999999999999999999  8999999999999999999999999999889999999


Q ss_pred             ecCCchHHHhhcCeEEEEe------CCeEEEecChhHH
Q 009033           91 IHQPSSEVFELFDRLYLLS------GGKTVYFGETSAA  122 (546)
Q Consensus        91 ~H~p~~~i~~~~D~v~lL~------~G~~v~~G~~~~~  122 (546)
                      +|++ . +.+.+|++++|.      +|++++.|+++++
T Consensus       535 eHd~-~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ei  570 (1809)
T PRK00635        535 EHDE-Q-MISLADRIIDIGPGAGIFGGEVLFNGSPREF  570 (1809)
T ss_pred             eCcH-H-HHHhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence            9996 3 779999999996      7899999998876

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.63  E-value=1.8e-15  Score=174.45  Aligned_cols=107  Identities=28%  Similarity=0.354  Sum_probs=93.7

Q ss_pred             HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHh---CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            9 LVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILM---RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         9 ~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~---~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +..++++.+||.. ..++.     .+.||||||||+.||++|+.   +|++++|||||+|||+.++..+++.|+++.++|
T Consensus       807 ~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G  881 (924)
T TIGR00630       807 RKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQG  881 (924)
T ss_pred             HHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            3457888899975 34553     45799999999999999997   599999999999999999999999999999889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~  122 (546)
                      .|||+++|++ ..+ ..+|+++.|      ++|++++.|+++++
T Consensus       882 ~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       882 NTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             CEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            9999999996 444 679999999      79999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.63  E-value=1.2e-15  Score=172.75  Aligned_cols=98  Identities=21%  Similarity=0.314  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHcCCccccccccc----CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQDCADTVIG----NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig----~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++++++++.+||++..++..|    ......||||||||++|||+|+++|++++|||||+|||+.+...+.+.+++   
T Consensus       551 ~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---  627 (659)
T TIGR00954       551 DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---  627 (659)
T ss_pred             HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---
Confidence            4567889999999876654332    113467999999999999999999999999999999999999999998876   


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      .|+|+|+++|+++  ..+.+|++++|+
T Consensus       628 ~~~tvI~isH~~~--~~~~~d~il~l~  652 (659)
T TIGR00954       628 FGITLFSVSHRKS--LWKYHEYLLYMD  652 (659)
T ss_pred             cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence            3899999999973  358899999997

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.62  E-value=1.9e-15  Score=184.70  Aligned_cols=100  Identities=24%  Similarity=0.355  Sum_probs=87.1

Q ss_pred             cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCCchHHH
Q 009033           22 CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS--RDGRTVIASIHQPSSEVF   99 (546)
Q Consensus        22 ~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~--~~g~tvi~~~H~p~~~i~   99 (546)
                      -.+|.+|. ....||||||||++|||++..+|++++||||||+||+.++.++.+.+.+..  .+|+|+|+++|++ +. .
T Consensus       749 g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~-~~-l  825 (1522)
T TIGR00957       749 GDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI-SY-L  825 (1522)
T ss_pred             CCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCCh-hh-h
Confidence            34677776 456799999999999999999999999999999999999999999997642  3579999999997 34 4


Q ss_pred             hhcCeEEEEeCCeEEEecChhHHHH
Q 009033          100 ELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus       100 ~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ..+|+|++|++|+++..|+.+++.+
T Consensus       826 ~~~D~ii~l~~G~i~~~g~~~~l~~  850 (1522)
T TIGR00957       826 PQVDVIIVMSGGKISEMGSYQELLQ  850 (1522)
T ss_pred             hhCCEEEEecCCeEEeeCCHHHHHh
Confidence            5699999999999999999988753

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.61  E-value=4.3e-15  Score=137.74  Aligned_cols=118  Identities=20%  Similarity=0.335  Sum_probs=106.5

Q ss_pred             CCHHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++.+++++++-+.++.+||- +.+|-     +++.||.||||||++||+|+-+|+|++.||...+||...+.++.++.-+
T Consensus       120 ~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~Le  194 (267)
T COG4167         120 LEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE  194 (267)
T ss_pred             CChHHHHHHHHHHHHHhccCcccccc-----chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHH
Confidence            35678899999999999984 56665     5678999999999999999999999999999999999999999999999


Q ss_pred             HHh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |.+ .|.+-|.++.+ ..-+-++.|+|++|++|+++..|++.++..
T Consensus       195 LQek~GiSyiYV~Qh-lG~iKHi~D~viVM~EG~vvE~G~t~~v~a  239 (267)
T COG4167         195 LQEKQGISYIYVTQH-IGMIKHISDQVLVMHEGEVVERGSTADVLA  239 (267)
T ss_pred             HHHHhCceEEEEech-hhHhhhhcccEEEEecCceeecCChhhhhc
Confidence            986 69999999988 578999999999999999999999987643

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.61  E-value=2.5e-15  Score=183.20  Aligned_cols=97  Identities=27%  Similarity=0.378  Sum_probs=85.3

Q ss_pred             ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCchHHHhh
Q 009033           23 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFEL  101 (546)
Q Consensus        23 ~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~~l~~~g~tvi~~~H~p~~~i~~~  101 (546)
                      .+|.+|. ....||||||||++|||+++.+|++++|||||+|||+.++.++++. ++++. +|+|+|+++|++ ..+ ..
T Consensus       538 ~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~-~~~-~~  613 (1490)
T TIGR01271       538 DKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKL-EHL-KK  613 (1490)
T ss_pred             ccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCh-HHH-Hh
Confidence            3566776 4668999999999999999999999999999999999999999984 66665 489999999997 444 56


Q ss_pred             cCeEEEEeCCeEEEecChhHHH
Q 009033          102 FDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus       102 ~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +|+|++|++|+++..|+.++..
T Consensus       614 ad~ii~l~~g~i~~~g~~~~l~  635 (1490)
T TIGR01271       614 ADKILLLHEGVCYFYGTFSELQ  635 (1490)
T ss_pred             CCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999999988875

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.61  E-value=1.4e-15  Score=168.20  Aligned_cols=86  Identities=33%  Similarity=0.475  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      +++++++++..++++       -.||.+|+ ....||||||||++|||+|+.+|+||+||||||+||+.+...+.+.|++
T Consensus       437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~  515 (529)
T TIGR02868       437 DEELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA  515 (529)
T ss_pred             HHHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            456777888877654       34899987 3456999999999999999999999999999999999999999999998


Q ss_pred             HHhCCCEEEEEecCC
Q 009033           80 LSRDGRTVIASIHQP   94 (546)
Q Consensus        80 l~~~g~tvi~~~H~p   94 (546)
                      +. +++|+|+++|++
T Consensus       516 ~~-~~~TvIiItHrl  529 (529)
T TIGR02868       516 AL-SGKTVVVITHHL  529 (529)
T ss_pred             hc-CCCEEEEEecCC
Confidence            74 469999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.60  E-value=3.2e-15  Score=163.34  Aligned_cols=105  Identities=33%  Similarity=0.494  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      +.+++.++..+|+.+. ++.++     .||||||+||.+|++|+.+|++|+|||||++||..+...+-+.|++.  .| |
T Consensus       132 e~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-t  202 (530)
T COG0488         132 EARAEEALLGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-T  202 (530)
T ss_pred             HHHHHHHHhcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-c
Confidence            4678889999999877 77665     59999999999999999999999999999999999999999998854  46 9


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeE-EEecChhH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETSA  121 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~-v~~G~~~~  121 (546)
                      +|+++|| +..+-+.|++|+-++.|++ .|.|..+.
T Consensus       203 viiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~~  237 (530)
T COG0488         203 VIVVSHD-RYFLDNVATHILELDRGKLTPYKGNYSS  237 (530)
T ss_pred             EEEEeCC-HHHHHHHhhheEEecCCceeEecCCHHH
Confidence            9999999 8999999999999999976 56676554

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.60  E-value=3.5e-15  Score=144.22  Aligned_cols=93  Identities=26%  Similarity=0.273  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++++++++.   .+..++     .++.||||||||++||++++    .+|++++|||||+|||+.++..+.+.|+++++
T Consensus        94 ~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~  165 (197)
T cd03278          94 QGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK  165 (197)
T ss_pred             hhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc
Confidence            3466777776   444555     44579999999999999997    46699999999999999999999999999976


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                       +.|||+++|++ .. .+.+|+++.+..
T Consensus       166 -~~tiIiitH~~-~~-~~~~d~v~~~~~  190 (197)
T cd03278         166 -ETQFIVITHRK-GT-MEAADRLYGVTM  190 (197)
T ss_pred             -CCEEEEEECCH-HH-HhhcceEEEEEe
Confidence             68999999996 44 478999999973

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PTZ00243 ABC transporter; Provisional

Probab=99.60  E-value=5.1e-15  Score=180.75  Aligned_cols=97  Identities=26%  Similarity=0.355  Sum_probs=82.3

Q ss_pred             cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 009033           24 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD  103 (546)
Q Consensus        24 ~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D  103 (546)
                      ++.+|. ....||||||||++|||+|+.+|++++|||||++||+.++.++++.+.....+|+|+|+++|++ .. ...+|
T Consensus       773 ~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~-~~-~~~ad  849 (1560)
T PTZ00243        773 ETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV-HV-VPRAD  849 (1560)
T ss_pred             hHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCH-HH-HHhCC
Confidence            344554 4567999999999999999999999999999999999999999875432233589999999996 44 47899


Q ss_pred             eEEEEeCCeEEEecChhHHH
Q 009033          104 RLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus       104 ~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +|++|++|++++.|+.++..
T Consensus       850 ~ii~l~~G~i~~~G~~~~l~  869 (1560)
T PTZ00243        850 YVVALGDGRVEFSGSSADFM  869 (1560)
T ss_pred             EEEEEECCEEEEecCHHHHH
Confidence            99999999999999988764

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.60  E-value=4.4e-15  Score=148.83  Aligned_cols=101  Identities=18%  Similarity=0.227  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHcCCcccccc---------------cccCcccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCC
Q 009033            6 KRTLVERTIIEMGLQDCADT---------------VIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLD   66 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~---------------~ig~~~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD   66 (546)
                      ..+++.++++.+||..-...               ..-+..++.||||||||++||++|+    .+|+++++||||+|||
T Consensus       123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld  202 (251)
T cd03273         123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD  202 (251)
T ss_pred             eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence            45788899999998611000               0112245679999999999999998    4789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           67 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        67 ~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      +.++..+.+.|+++++ |.|+|+++|++  ++.+.+|+++-+.
T Consensus       203 ~~~~~~~~~~l~~~~~-g~~ii~iSH~~--~~~~~~d~v~~~~  242 (251)
T cd03273         203 LSHTQNIGRMIKTHFK-GSQFIVVSLKE--GMFNNANVLFRTR  242 (251)
T ss_pred             HHHHHHHHHHHHHHcC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence            9999999999999964 88999999994  7888999998875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.59  E-value=1.3e-14  Score=140.99  Aligned_cols=122  Identities=20%  Similarity=0.248  Sum_probs=114.9

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++.+++++++++--+|.+..|+.+     +.+|.||+-|++.|.+.-.+|+||++||-.+-.|+.=+..-.+.++++
T Consensus       119 ~~~~ei~~~~~eIieFaELG~fi~~Pv-----ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~  193 (249)
T COG1134         119 LTRKEIDEKVDEIIEFAELGDFIDQPV-----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL  193 (249)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhCch-----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence            468899999999999999999999965     679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ  128 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~  128 (546)
                      .+++.|||+++|++ ..+.++||++++|++|++.+.|+++++.+++..
T Consensus       194 ~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~  240 (249)
T COG1134         194 VEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE  240 (249)
T ss_pred             HHcCCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence            88889999999995 789999999999999999999999999987754

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.59  E-value=6e-15  Score=147.52  Aligned_cols=104  Identities=19%  Similarity=0.212  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHcCCccccccc---------ccC--------cccCCCCHHHHHHHHHHHHHHhC----CCeEEEeCCCCCC
Q 009033            7 RTLVERTIIEMGLQDCADTV---------IGN--------WHLRGISGGERRRVSIALEILMR----PRLLFLDEPTSGL   65 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~---------ig~--------~~~~~lSgGer~Rvsia~~l~~~----P~il~LDEPtsgL   65 (546)
                      .+.++++++.+|++...+..         +.+        ..+..||||||||++||++++.+    |+++++||||+||
T Consensus       111 ~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~L  190 (247)
T cd03275         111 LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAAL  190 (247)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccC
Confidence            34567888999986432211         111        12378999999999999999875    8999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe-CCe
Q 009033           66 DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGK  112 (546)
Q Consensus        66 D~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~-~G~  112 (546)
                      |+.++..+.+.|++++++|.+||+++|++  ++.+.+|+++++. ++.
T Consensus       191 D~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~~  236 (247)
T cd03275         191 DNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQE  236 (247)
T ss_pred             CHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecCC
Confidence            99999999999999988799999999994  5678999999996 443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.58  E-value=5.6e-15  Score=135.32  Aligned_cols=101  Identities=22%  Similarity=0.386  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC
Q 009033            7 RTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDG   84 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~-~~g   84 (546)
                      +.+..+.|+.++|.+. .++     .+..||||||||.+++|.|..-|+||+||||||.||+.++..|-+++.++. .++
T Consensus       110 r~aa~~llar~~l~~~~L~k-----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~  184 (223)
T COG4619         110 RAAALDLLARFALPDSILTK-----NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN  184 (223)
T ss_pred             hHHHHHHHHHcCCchhhhcc-----hhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence            3556778999999764 444     345699999999999999999999999999999999999999999999987 578


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      +.++-+||++ .+..+.+|+++-+..|+.
T Consensus       185 vAv~WiTHd~-dqa~rha~k~itl~~G~~  212 (223)
T COG4619         185 VAVLWITHDK-DQAIRHADKVITLQPGHA  212 (223)
T ss_pred             eEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence            9999999997 678899999999998874

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.58  E-value=5.2e-15  Score=143.11  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l----~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++.++++++.   .+..++.+     +.||+|||||++||+++    +.+|++++|||||+|||..++..+.+.|+++++
T Consensus        90 ~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~  161 (198)
T cd03276          90 QDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAK  161 (198)
T ss_pred             HHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHh
Confidence            4566677766   55566644     57999999999999999    589999999999999999999999999999865


Q ss_pred             C---CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033           83 D---GRTVIASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        83 ~---g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      +   ++||++++|++ .++..+ |+|.+|+.|+
T Consensus       162 ~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         162 KQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD  192 (198)
T ss_pred             cCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence            3   46899999996 567664 9999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.57  E-value=1.2e-14  Score=138.11  Aligned_cols=100  Identities=29%  Similarity=0.472  Sum_probs=90.3

Q ss_pred             HHHHHH--cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q 009033           11 ERTIIE--MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTV   87 (546)
Q Consensus        11 ~~~l~~--lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tv   87 (546)
                      .+-++.  +||++..++.+|-     |||||||-++++.+-++.|+||+|||=|+.|||.++..|++.-.++.+ .+.|.
T Consensus       128 ~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTt  202 (263)
T COG1101         128 RERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTT  202 (263)
T ss_pred             HHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCce
Confidence            344554  5778899998874     999999999999999999999999999999999999999999999875 57899


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTVYF  116 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~  116 (546)
                      +++||. ..++..+-+|+++|++|+||.+
T Consensus       203 lMVTHn-m~~Al~yG~RlImLh~G~IvlD  230 (263)
T COG1101         203 LMVTHN-MEDALDYGNRLIMLHSGKIVLD  230 (263)
T ss_pred             EEEecc-HHHHHhhCCeEEEEeCCeEEEE
Confidence            999999 4789999999999999999976

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.57  E-value=8.6e-15  Score=145.69  Aligned_cols=77  Identities=26%  Similarity=0.464  Sum_probs=69.3

Q ss_pred             cccCCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 009033           30 WHLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL  105 (546)
Q Consensus        30 ~~~~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v  105 (546)
                      ..++.||||||||++||++++.    +|+++++||||+|||+.++..+.+.|+++++ +.|||+++|++  ++.+++|++
T Consensus       154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i  230 (243)
T cd03272         154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKF  230 (243)
T ss_pred             ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEE
Confidence            3567899999999999999974    5899999999999999999999999999976 78888888874  688999999


Q ss_pred             EEEe
Q 009033          106 YLLS  109 (546)
Q Consensus       106 ~lL~  109 (546)
                      ++|.
T Consensus       231 ~~l~  234 (243)
T cd03272         231 YGVK  234 (243)
T ss_pred             EEEE
Confidence            9996

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.55  E-value=8.8e-15  Score=143.04  Aligned_cols=92  Identities=23%  Similarity=0.244  Sum_probs=78.8

Q ss_pred             HHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033           11 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus        11 ~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      +++++.++|.+..++.+     +.+|+|||||++||++++.    +|+++++||||+|||+.++..+.+.|+++++ +.|
T Consensus       109 ~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~  182 (212)
T cd03274         109 GEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQ  182 (212)
T ss_pred             CcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCE
Confidence            45566777877777754     4699999999999999974    4799999999999999999999999999864 578


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      +|+++|++  ++.+.+|++++|+.
T Consensus       183 ~iivs~~~--~~~~~~d~v~~~~~  204 (212)
T cd03274         183 FIVISLRN--NMFELADRLVGIYK  204 (212)
T ss_pred             EEEEECcH--HHHHhCCEEEEEEe
Confidence            88888985  78899999999974

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.52  E-value=3.2e-14  Score=138.22  Aligned_cols=79  Identities=23%  Similarity=0.299  Sum_probs=70.8

Q ss_pred             ccCCCCHHHHHH------HHHHHHHHhCCCeEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCCchHHHhhc
Q 009033           31 HLRGISGGERRR------VSIALEILMRPRLLFLDEPTSGLDSAAAF-FVTQTLRCLSRD-GRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        31 ~~~~lSgGer~R------vsia~~l~~~P~il~LDEPtsgLD~~~~~-~v~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~  102 (546)
                      .++.||+|||||      ++||++++.+|+++++||||+|||+.++. .+.+.|++++++ |.|||+++|++ . ....+
T Consensus       112 ~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~-~~~~~  189 (204)
T cd03240         112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-E-LVDAA  189 (204)
T ss_pred             CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-H-HHhhC
Confidence            556799999996      78999999999999999999999999999 999999999876 89999999996 3 45789


Q ss_pred             CeEEEEe-CC
Q 009033          103 DRLYLLS-GG  111 (546)
Q Consensus       103 D~v~lL~-~G  111 (546)
                      |+++.|. +|
T Consensus       190 d~i~~l~~~~  199 (204)
T cd03240         190 DHIYRVEKDG  199 (204)
T ss_pred             CEEEEEeeCC
Confidence            9999996 44

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.52  E-value=2.8e-14  Score=131.00  Aligned_cols=104  Identities=26%  Similarity=0.369  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +++..++++.+++..|++.+..=..    .+.++||||+|||.|||.++.+=+||+|||||+.||..++.-+++++++-.
T Consensus       124 ~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K  199 (235)
T COG4778         124 PREVARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK  199 (235)
T ss_pred             CHHHHHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH
Confidence            5667788899999999997543322    456799999999999999999999999999999999999999999999999


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      ..|..+|-+-|| .+--.+.+||++-+..
T Consensus       200 a~GaAlvGIFHD-eevre~vadR~~~~~~  227 (235)
T COG4778         200 ARGAALVGIFHD-EEVREAVADRLLDVSA  227 (235)
T ss_pred             hcCceEEEeecc-HHHHHHHhhheeeccc
Confidence            899999999999 4555667999987753

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.50  E-value=1.7e-14  Score=136.30  Aligned_cols=116  Identities=22%  Similarity=0.328  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DG   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g   84 (546)
                      +++++-+++..+|+.+..|-.-  .++.+|.-||-|+|.||.+++.+|++|+.||||+.+||.++.++.++|.++.+ +|
T Consensus       132 rKrrAIeLLHrVGIKdHkDIM~--SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~  209 (330)
T COG4170         132 RKRRAIELLHRVGIKDHKDIMR--SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN  209 (330)
T ss_pred             hHHHHHHHHHHhccccHHHHHH--hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCC
Confidence            4567788999999998887643  47889999999999999999999999999999999999999999999999986 68


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .||++++|| ...+-+.+|++-+|.-|+.+.+++.+++++
T Consensus       210 TtILL~s~D-l~~is~W~d~i~VlYCGQ~~ESa~~e~l~~  248 (330)
T COG4170         210 TTILLISHD-LQMISQWADKINVLYCGQTVESAPSEELVT  248 (330)
T ss_pred             ceEEEEccc-HHHHHHHhhheEEEEecccccccchhHHhc
Confidence            999999999 578999999999999999999999998764

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.48  E-value=1.1e-14  Score=134.11  Aligned_cols=115  Identities=28%  Similarity=0.420  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-----CC--CeEEEeCCCCCCCHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-----RP--RLLFLDEPTSGLDSAAAFFVTQ   75 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~-----~P--~il~LDEPtsgLD~~~~~~v~~   75 (546)
                      .+++...++++-..++|++...+.+     ..|||||-|||-+|...+.     ||  ++|+||||.++||.+....+-+
T Consensus        99 ~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr  173 (248)
T COG4138          99 DKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR  173 (248)
T ss_pred             hHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH
Confidence            4566677888999999988776644     5799999999999987764     55  6999999999999999999999


Q ss_pred             HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           76 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        76 ~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      .|.++|..|.+||++.||. ....+.+|++.+|+.|++...|..+++.
T Consensus       174 ll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~~~eVl  220 (248)
T COG4138         174 LLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGRREEVL  220 (248)
T ss_pred             HHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence            9999999999999999995 6788999999999999999999999875

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.48  E-value=1.9e-13  Score=160.76  Aligned_cols=114  Identities=25%  Similarity=0.321  Sum_probs=94.7

Q ss_pred             HHHHHHHHHcCC-------cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL-------~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++-+++++.-.|       .+.-.|.||++. -.||||||||+++|||+-++.+|.+||.|.|.+|+....++.+..-+.
T Consensus       611 ~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~  689 (1381)
T KOG0054|consen  611 ERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG  689 (1381)
T ss_pred             HHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh
Confidence            444555555433       345567788744 469999999999999999999999999999999999999998865544


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .-+++|+|++|||.  +..+.+|.|++|++|++...|+.+++.+
T Consensus       690 ~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  690 LLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK  731 (1381)
T ss_pred             hhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence            44679999999984  6789999999999999999999998873

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.46  E-value=2.8e-13  Score=128.83  Aligned_cols=75  Identities=24%  Similarity=0.279  Sum_probs=69.0

Q ss_pred             CCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           34 GISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      =||||||||+++|++++    .+|+++++|||++|||+..+..+.+.|++++++|.|+|+++|++  +..+.+|+++.+.
T Consensus        94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~  171 (178)
T cd03239          94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVL  171 (178)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEE
Confidence            39999999999999996    68999999999999999999999999999988789999999996  4567899999997


Q ss_pred             C
Q 009033          110 G  110 (546)
Q Consensus       110 ~  110 (546)
                      +
T Consensus       172 ~  172 (178)
T cd03239         172 F  172 (178)
T ss_pred             E
Confidence            5

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.45  E-value=2.3e-13  Score=144.17  Aligned_cols=110  Identities=25%  Similarity=0.379  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ..+.++-+++..+| +++.+++.+     +++|||+|+|+++|++|..+|++|+|||||+|||..+..-+-+.|++..+.
T Consensus       196 ~~~~k~~~il~glgf~~~m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~  270 (614)
T KOG0927|consen  196 TFEAKAAKILHGLGFLSEMQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI  270 (614)
T ss_pred             hHHHHHHHHHHhcCCCHhHHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc
Confidence            34455667777777 456677744     679999999999999999999999999999999999999998888776432


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCe-EEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGK-TVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~-~v~~G~~~~~  122 (546)
                        ++++++|. ...+-..|.+|+-+.+++ +.|.|+.++-
T Consensus       271 --~lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gnydqy  307 (614)
T KOG0927|consen  271 --ILVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNYDQY  307 (614)
T ss_pred             --eEEEEecc-hhhhhhHhhhhheecccceeeecCCHHHH
Confidence              89999997 688899999999999998 5566777653

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=3.3e-13  Score=126.15  Aligned_cols=85  Identities=28%  Similarity=0.454  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      ...+.+.++.+||....|..++     .||-||||||+||+-+++.+++-+||||+++||......+-..+..-+.+|-.
T Consensus       108 ~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGi  182 (209)
T COG4133         108 AATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGI  182 (209)
T ss_pred             hhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCE
Confidence            3567889999999999999876     59999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCch
Q 009033           87 VIASIHQPSS   96 (546)
Q Consensus        87 vi~~~H~p~~   96 (546)
                      ||.+||||..
T Consensus       183 VllttHq~l~  192 (209)
T COG4133         183 VLLTTHQPLP  192 (209)
T ss_pred             EEEecCCccC
Confidence            9999999854

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.44  E-value=3.5e-13  Score=142.02  Aligned_cols=114  Identities=28%  Similarity=0.431  Sum_probs=102.3

Q ss_pred             CHHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      .+.+.++.+.+++++++...+ .++     ..+.||||.+||+-+||+|..+|++|+..+||.|||..+...+.+.|.+.
T Consensus       375 ~~~~i~~~a~~li~~fdVr~~~~~~-----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~  449 (501)
T COG3845         375 DRRAIRKFARELIEEFDVRAPSPDA-----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL  449 (501)
T ss_pred             CHHHHHHHHHHHHHHcCccCCCCCc-----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH
Confidence            356677888999999998732 333     34679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~  121 (546)
                      ++.|+.|++++-+ ..|+++++|||.+|++|+++...++++
T Consensus       450 r~~G~AVLLiS~d-LDEil~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         450 RDAGKAVLLISED-LDEILELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             HhcCCEEEEEehh-HHHHHHhhheeeeeeCCceeccccccc
Confidence            9999999999999 589999999999999999998877765

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.42  E-value=3.3e-13  Score=132.02  Aligned_cols=82  Identities=18%  Similarity=0.182  Sum_probs=70.1

Q ss_pred             ccCCCCHHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCCchHHHhhcC-
Q 009033           31 HLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G-RTVIASIHQPSSEVFELFD-  103 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l----~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-g-~tvi~~~H~p~~~i~~~~D-  103 (546)
                      .+.+||||||||+.++.++    +.+|+++++||||+|||+.++..+++.|++++++ | .|+|+++|+. .++.+.+| 
T Consensus       123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~-~~~~~~~~~  201 (213)
T cd03277         123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL-LPGLNYHEK  201 (213)
T ss_pred             chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh-ccCCcccCc
Confidence            5678999999998877554    4799999999999999999999999999999876 5 5899999995 45667776 


Q ss_pred             -eEEEEeCCeE
Q 009033          104 -RLYLLSGGKT  113 (546)
Q Consensus       104 -~v~lL~~G~~  113 (546)
                       +|++|++|+-
T Consensus       202 ~~v~~l~~g~~  212 (213)
T cd03277         202 MTVLCVYNGPH  212 (213)
T ss_pred             eEEEEEecCcc
Confidence             7888888874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.39  E-value=1.6e-12  Score=142.23  Aligned_cols=108  Identities=24%  Similarity=0.318  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+.+...+..+++.. ...+.|     +.||||||.||.+|+.++.+|.+|+|||||+.||..+...+-+.|+...   -
T Consensus       416 e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---G  487 (530)
T COG0488         416 EQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE---G  487 (530)
T ss_pred             HHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC---C
Confidence            466788899999863 455655     4699999999999999999999999999999999999999999988874   5


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |||+++|| ...+-+.+++++.+.++-..|.|..++..
T Consensus       488 tvl~VSHD-r~Fl~~va~~i~~~~~~~~~~~g~y~~y~  524 (530)
T COG0488         488 TVLLVSHD-RYFLDRVATRIWLVEDKVEEFEGGYEDYL  524 (530)
T ss_pred             eEEEEeCC-HHHHHhhcceEEEEcCceeEcCCCHHHHH
Confidence            99999999 58999999999999983334447766543

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.38  E-value=8.9e-13  Score=137.20  Aligned_cols=97  Identities=31%  Similarity=0.457  Sum_probs=88.8

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      -+.+++++.|+|++..|+-+.     .|||||-||++||.+++.+.+++++|||||-||...+....+.+++|++.+++|
T Consensus       192 g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~V  266 (591)
T COG1245         192 GKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV  266 (591)
T ss_pred             CcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeE
Confidence            457889999999999998664     699999999999999999999999999999999999999999999999989999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeC
Q 009033           88 IASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      |++.||. .-+--+.|-|.++.+
T Consensus       267 iVVEHDL-avLD~lsD~vhI~YG  288 (591)
T COG1245         267 IVVEHDL-AVLDYLSDFVHILYG  288 (591)
T ss_pred             EEEechH-HHHHHhhheeEEEec
Confidence            9999994 666777888888865

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.35  E-value=4.7e-12  Score=139.74  Aligned_cols=110  Identities=32%  Similarity=0.431  Sum_probs=95.6

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         9 ~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      +.-+.|.++||.-.   ..|. ...+|||||.||+-+|.+|..+.   .+.+|||||+||......++++.|.+|..+|-
T Consensus       801 rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~Gn  876 (935)
T COG0178         801 RKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGN  876 (935)
T ss_pred             HHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            34456778888643   2443 44579999999999999998776   89999999999999999999999999999999


Q ss_pred             EEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE  124 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~  124 (546)
                      |||++.|..  ++.+.+|.|+=|      .+|++|..|+|+++.+
T Consensus       877 TViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~  919 (935)
T COG0178         877 TVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK  919 (935)
T ss_pred             EEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence            999999985  789999999988      4689999999999765

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.35  E-value=2.3e-12  Score=131.07  Aligned_cols=76  Identities=30%  Similarity=0.428  Sum_probs=68.6

Q ss_pred             CCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           34 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      .||||||||+++|++++.    +|+++++||||+|||+.+...+.+.|+++++ +.|+|+++|+|.  +...+|+++++.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~  246 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE  246 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence            499999999999987654    9999999999999999999999999999865 689999999973  568999999998


Q ss_pred             CCe
Q 009033          110 GGK  112 (546)
Q Consensus       110 ~G~  112 (546)
                      +|.
T Consensus       247 ~~~  249 (276)
T cd03241         247 KEV  249 (276)
T ss_pred             Eec
Confidence            764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.34  E-value=3.9e-12  Score=119.10  Aligned_cols=75  Identities=31%  Similarity=0.418  Sum_probs=68.4

Q ss_pred             CCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           34 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      ++|+||+||+++|++|..    +|+++++|||++|+|+.....+.+.++++.++|.++|++||++  ++.+.+|+++.|.
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~  154 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK  154 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence            699999999999999987    7899999999999999999999999999876689999999996  4567899999986


Q ss_pred             C
Q 009033          110 G  110 (546)
Q Consensus       110 ~  110 (546)
                      .
T Consensus       155 ~  155 (162)
T cd03227         155 K  155 (162)
T ss_pred             E
Confidence            4

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.32  E-value=1.1e-12  Score=127.06  Aligned_cols=83  Identities=22%  Similarity=0.153  Sum_probs=74.3

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      ...+|+||||++.|+++ +.+|+++++|||++|||+..+..+.. .++.+.+.|.|+|+++|+  .++.+++|++..+.+
T Consensus        89 ~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~  165 (200)
T cd03280          89 LSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVEN  165 (200)
T ss_pred             cchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEE
Confidence            35689999999999977 58999999999999999999999974 688888789999999998  468899999999999


Q ss_pred             CeEEEec
Q 009033          111 GKTVYFG  117 (546)
Q Consensus       111 G~~v~~G  117 (546)
                      |++.+.+
T Consensus       166 g~l~~~~  172 (200)
T cd03280         166 ASMEFDP  172 (200)
T ss_pred             EEEEEec
Confidence            9998874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.32  E-value=7.8e-12  Score=147.39  Aligned_cols=113  Identities=23%  Similarity=0.350  Sum_probs=91.9

Q ss_pred             HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+-++|+..+|.++       .|+.|.+ ....+|-||||.+++||||+++++||+|||+|+..|+.+-..|.++|++-
T Consensus      1243 ~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~ 1321 (1381)
T KOG0054|consen 1243 DEIWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE 1321 (1381)
T ss_pred             HHHHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH
Confidence            344455555544332       4455543 34579999999999999999999999999999999999999999999986


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      =+ ++|||.+.|.. ..+ --+|||+||++|+++++|+|.++.+
T Consensus      1322 F~-dcTVltIAHRl-~TV-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1322 FK-DCTVLTIAHRL-NTV-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred             hc-CCeEEEEeecc-chh-hhcCeEEEeeCCeEeecCChHHHHh
Confidence            44 59999999995 444 4599999999999999999998764

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.31  E-value=4.5e-12  Score=114.40  Aligned_cols=90  Identities=27%  Similarity=0.364  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHH-HHHh
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSR   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~-~l~~   82 (546)
                      +.+++.++..+++.||....++     .+.+||||||-||++-|+|+..|+.++||||+|.||.+-+.+..+..- ++..
T Consensus       109 ~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~  183 (213)
T COG4136         109 NARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA  183 (213)
T ss_pred             HHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHh
Confidence            3577788999999999988877     567899999999999999999999999999999999999999988754 4556


Q ss_pred             CCCEEEEEecCCchHHH
Q 009033           83 DGRTVIASIHQPSSEVF   99 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~   99 (546)
                      .|..+|.+||| ..++.
T Consensus       184 agiPtv~VTHD-~~Dvp  199 (213)
T COG4136         184 AGIPTVQVTHD-LQDVP  199 (213)
T ss_pred             cCCCeEEEecc-cccCC
Confidence            79999999999 45553

>TIGR00634 recN DNA repair protein RecN

Probab=99.31  E-value=4.6e-12  Score=141.13  Aligned_cols=77  Identities=27%  Similarity=0.386  Sum_probs=70.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009033           33 RGISGGERRRVSIALEILMR----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL  108 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~~----P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL  108 (546)
                      +.+||||+||++||++++..    |+++++||||+|||+.++..+.+.|+++++ |++||++||+|  .+...+|+++++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~--~~~~~ad~~~~l  515 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLP--QVAAHADAHFKV  515 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHHhcCeEEEE
Confidence            57899999999999999985    699999999999999999999999999985 79999999997  345789999999


Q ss_pred             eCCe
Q 009033          109 SGGK  112 (546)
Q Consensus       109 ~~G~  112 (546)
                      ++|.
T Consensus       516 ~k~~  519 (563)
T TIGR00634       516 EKEG  519 (563)
T ss_pred             EEcc
Confidence            8875

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.28  E-value=7.1e-10  Score=109.82  Aligned_cols=224  Identities=13%  Similarity=0.105  Sum_probs=150.1

Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccC-CCC--hhhHHhh----hhhHHHHHHHHHHHHhhhhhhHHhhh--H
Q 009033          232 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTG--YNSILAR----GSCASFVFGFVTFMSIGGFPSFVEDM--K  302 (546)
Q Consensus       232 R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l-~~~--~~~i~~r----~~~lf~~~~~~~f~~~~~~p~~~~er--~  302 (546)
                      |.++...|||..+..-+++-+++.+++|.++-.. +.+  ..+....    .|.+.+.....+.  ..+.. ...||  .
T Consensus         1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~-~~~~~~~g   77 (236)
T TIGR01247         1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGIS-VIWDRQFG   77 (236)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhH-HHHHHHhC
Confidence            6677888999888888888888888888887542 111  1121111    1111111111111  11121 22222  3


Q ss_pred             HHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 009033          303 VFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNF  382 (546)
Q Consensus       303 vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~  382 (546)
                      ++.|= ...--+...|++++.+.+++..++..+++..+.+++.+++..  .++.+++..++...+..++|.++++..++.
T Consensus        78 ~~~~~-~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~  154 (236)
T TIGR01247        78 FLKEI-LVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPS--GVIPTLVLAFIVGVALSGLGVAIAARMDSM  154 (236)
T ss_pred             HHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            33332 233446889999999999999999999999999988775543  344444455555667789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHHHHhhhcC
Q 009033          383 LMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQ  462 (546)
Q Consensus       383 ~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~vL~~~~~  462 (546)
                      .....+.+.+..+++.+||.+.+.+.+|+ +|+ |+.+++|.+|+.|++-..-. |                        
T Consensus       155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~-~~~-~i~~~~P~~~~~~~~r~~~~-~------------------------  207 (236)
T TIGR01247       155 EGFQIIMSMLMLPMFFLSGAFYPITTMPA-WMQ-GLAKINPLTYAVDGARYYLA-G------------------------  207 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCHHhCHH-HHH-HHHHHCcHHHHHHHHHHHHh-C------------------------
Confidence            88888888888888999999999999997 344 48999999999998554221 1                        


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHH
Q 009033          463 IDVRRSKWIDLSVIFSMIISYRIIFF  488 (546)
Q Consensus       463 ~~~~~~~w~~~~iL~~~~~~f~~l~~  488 (546)
                      -....+.|.++++|+++.+++.+++.
T Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~l~~  233 (236)
T TIGR01247       208 VSPTFPLEQDLLVLTLLAVIFVGIAA  233 (236)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHH
Confidence            01012356788999998888877654

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK10869 recombination and repair protein; Provisional

Probab=99.27  E-value=1.3e-11  Score=136.68  Aligned_cols=77  Identities=26%  Similarity=0.419  Sum_probs=70.0

Q ss_pred             CCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009033           33 RGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL  108 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL  108 (546)
                      +.+||||+||++||+.++.    +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|  .+...+|+.+++
T Consensus       429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v  505 (553)
T PRK10869        429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV  505 (553)
T ss_pred             hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence            4589999999999999997    5899999999999999999999999999975 68999999997  356899999999


Q ss_pred             eCCe
Q 009033          109 SGGK  112 (546)
Q Consensus       109 ~~G~  112 (546)
                      .++.
T Consensus       506 ~k~~  509 (553)
T PRK10869        506 SKET  509 (553)
T ss_pred             eccc
Confidence            8754

>TIGR00618 sbcc exonuclease SbcC

Probab=99.27  E-value=1.3e-11  Score=146.74  Aligned_cols=81  Identities=20%  Similarity=0.201  Sum_probs=74.9

Q ss_pred             cccCCCCHHHHHHHHHHHHHHh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009033           30 WHLRGISGGERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF   99 (546)
Q Consensus        30 ~~~~~lSgGer~Rvsia~~l~~----------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~   99 (546)
                      ..+++|||||++||++|++|+.          +|++||+||||+|||+.+...+++.|+++...|++|++++|+| ....
T Consensus       946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~ 1024 (1042)
T TIGR00618       946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRE 1024 (1042)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHH
Confidence            4578899999999999999985          7999999999999999999999999999988899999999996 6788


Q ss_pred             hhcCeEEEEeCC
Q 009033          100 ELFDRLYLLSGG  111 (546)
Q Consensus       100 ~~~D~v~lL~~G  111 (546)
                      .++|+|.+++.|
T Consensus      1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1025 RIPHRILVKKTN 1036 (1042)
T ss_pred             hhCCEEEEEECC
Confidence            999999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=4.1e-12  Score=134.16  Aligned_cols=107  Identities=24%  Similarity=0.365  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            6 KRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+..+++|..+|.++ .+..     ..+.||||-|-|+++||||..+||||+|||||+.||..+..-+.+.|+.+.   
T Consensus       174 l~ei~~~~L~glGFt~emq~~-----pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---  245 (582)
T KOG0062|consen  174 LEEIYDKILAGLGFTPEMQLQ-----PTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---  245 (582)
T ss_pred             HHHHHHHHHHhCCCCHHHHhc-----cccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---
Confidence            3445555888888864 3444     446799999999999999999999999999999999999999999998875   


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeE-EEecChhH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETSA  121 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~-v~~G~~~~  121 (546)
                      .|+|+++|| +..+-+.|..|+.+++-++ .|-|..++
T Consensus       246 ~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~  282 (582)
T KOG0062|consen  246 ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQ  282 (582)
T ss_pred             ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence            699999999 7888888888888877665 34565544

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.25  E-value=1.2e-11  Score=137.83  Aligned_cols=79  Identities=27%  Similarity=0.360  Sum_probs=69.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHH----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009033           31 HLRGISGGERRRVSIALEIL----------MRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF   99 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~----------~~P~il~LDEPt-sgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~   99 (546)
                      .+..||||||||++||++|+          .+|++++||||| ++||+.+...+.+.|+++  .|.|||+++|++  +..
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~  540 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP  540 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence            45689999999999999887          599999999998 789999999999999999  588999999996  456


Q ss_pred             hhcCeEEEEeC-CeE
Q 009033          100 ELFDRLYLLSG-GKT  113 (546)
Q Consensus       100 ~~~D~v~lL~~-G~~  113 (546)
                      ..+|++++|.+ |+.
T Consensus       541 ~~~d~~~~l~~~~~~  555 (562)
T PHA02562        541 QKFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhhcEEEEEEECCe
Confidence            78999999985 554

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.24  E-value=2e-11  Score=127.34  Aligned_cols=93  Identities=26%  Similarity=0.398  Sum_probs=83.5

Q ss_pred             HHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 009033           11 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA   89 (546)
Q Consensus        11 ~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~   89 (546)
                      .++++-|+|++..++.+.     +|||||.|||+||.+|..++++.+||||++-||+..+..+-+.+++... .+.|.++
T Consensus       437 ~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~v  511 (591)
T COG1245         437 TEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV  511 (591)
T ss_pred             HhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEE
Confidence            467778899999988664     6999999999999999999999999999999999999999999999986 5789999


Q ss_pred             EecCCchHHHhhcCeEEEEe
Q 009033           90 SIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        90 ~~H~p~~~i~~~~D~v~lL~  109 (546)
                      +-||. .-+--+.||+++..
T Consensus       512 VdHDi-~~~dyvsDr~ivF~  530 (591)
T COG1245         512 VDHDI-YMIDYVSDRLIVFE  530 (591)
T ss_pred             Eecce-ehhhhhhceEEEEe
Confidence            99994 66777899998775

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=2.7e-11  Score=128.08  Aligned_cols=100  Identities=27%  Similarity=0.412  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      ++.+.+-+..+||+ +.+...     +.+||||||=||.+|.....+|.+|+|||||+.||-.+-..+.+.|+...   .
T Consensus       459 ~ee~r~hl~~~Gl~g~la~~s-----i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---G  530 (582)
T KOG0062|consen  459 EEEIRRHLGSFGLSGELALQS-----IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---G  530 (582)
T ss_pred             HHHHHHHHHhcCCCchhhhcc-----ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---C
Confidence            35567778999997 355553     46799999999999999999999999999999999999999998888873   4


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVY  115 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~  115 (546)
                      .||+++|+ .+.+-.+|+.+.+..+|++.-
T Consensus       531 GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  531 GVVLVSHD-EEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             cEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence            79999999 588999999999999999854

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.23  E-value=1.5e-11  Score=134.45  Aligned_cols=100  Identities=30%  Similarity=0.399  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHcCCccccccccc-CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQDCADTVIG-NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig-~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .+.+.++|.+.||.+..++.=+ +..-+-||+|||||++.||.|+++|++++|||.|++||..+...+++.+++-.. +.
T Consensus       487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp-~~  565 (604)
T COG4178         487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP-DA  565 (604)
T ss_pred             hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCC-CC
Confidence            4667889999999998877543 234567999999999999999999999999999999999999999999988543 58


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEe
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      |||.+.|+|  .+.++.++.+-+.
T Consensus       566 tvISV~Hr~--tl~~~h~~~l~l~  587 (604)
T COG4178         566 TVISVGHRP--TLWNFHSRQLELL  587 (604)
T ss_pred             EEEEeccch--hhHHHHhhheeec
Confidence            999999996  4677777766554

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.19  E-value=6.6e-10  Score=107.93  Aligned_cols=152  Identities=9%  Similarity=0.071  Sum_probs=117.9

Q ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 009033          313 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI  392 (546)
Q Consensus       313 Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~~~~  392 (546)
                      -+...++++|.+..++..++.+++...+.|++.|++.+  ++..+++.+++...+..+++.++++++++...  ......
T Consensus        57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~  132 (208)
T TIGR03062        57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVL  132 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHH
Confidence            35567899999999999999999999999999999865  45556666677778888999999999886643  334444


Q ss_pred             HHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHHHHhhhcCcccccchhHH
Q 009033          393 QGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWID  472 (546)
Q Consensus       393 ~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~vL~~~~~~~~~~~~w~~  472 (546)
                      ..+.++++|.+.+.+.+|+ +++ |+.+++|.+|+.+++....+.|                         . ..+.|.+
T Consensus       133 ~~~~~~~sG~~~P~~~~P~-~~~-~i~~~~P~t~~~~~~r~~~~~~-------------------------~-~~~~~~~  184 (208)
T TIGR03062       133 LVLQLGSSGGTFPIELLPA-FFQ-AIHPFLPMTYSVNGLRQLISGG-------------------------N-DGTLWQA  184 (208)
T ss_pred             HHHHHccCCCccchhhCHH-HHH-HhhhhCcHHHHHHHHHHHHhCC-------------------------c-HHHHHHH
Confidence            4556667888899999997 344 4999999999999987654421                         0 1236889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Q 009033          473 LSVIFSMIISYRIIFFVMIKISED  496 (546)
Q Consensus       473 ~~iL~~~~~~f~~l~~~~l~~~~~  496 (546)
                      +++|+++.+++.+++....|.++|
T Consensus       185 ~~~L~~~~~v~~~la~~~~~~~~~  208 (208)
T TIGR03062       185 VAVLLLILVVFLALSLLSARRKRR  208 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC
Confidence            999999999998888877765543

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.17  E-value=8.8e-09  Score=103.45  Aligned_cols=233  Identities=11%  Similarity=0.033  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHHHh-hhhhhHHhhhHH
Q 009033          226 AFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKV  303 (546)
Q Consensus       226 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~~~-~~~p~~~~er~v  303 (546)
                      ...+.+|.++..+|+ |.....-+++-++.-+++|..+-....+..+   ..-.-|+.-+.+.+..+ ++.-..  --.+
T Consensus         7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g---~~y~~f~~pg~l~~~~~~~~~~~~--~~~~   81 (253)
T TIGR01291         7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG---VSYAAFLAAGMVATSAMTASTFET--IYAT   81 (253)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC---CCHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            556779999999999 8888888888888888888887543211111   11122332222222111 110000  0023


Q ss_pred             HHHHhhCCCc--------chHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009033          304 FQRERLNGHY--------GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAI  375 (546)
Q Consensus       304 f~RE~~~g~Y--------~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i  375 (546)
                      +.|||.+|.+        +...+++|+++.+.-..++..++...+.++ .|..+. ...+.....+++..++..++|+++
T Consensus        82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~  159 (253)
T TIGR01291        82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLV  159 (253)
T ss_pred             HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444442        678899999998877776666665555443 344433 233333344455566667899999


Q ss_pred             HHhccchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHH
Q 009033          376 ASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEY  455 (546)
Q Consensus       376 ~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~  455 (546)
                      +++.++......+...+..+++.+||.+-+.+.+|+  |..++.+++|..|+.|++-..-+                   
T Consensus       160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~~~-------------------  218 (253)
T TIGR01291       160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPVML-------------------  218 (253)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHHHh-------------------
Confidence            999999998888888888889999999999999997  43448899999999998554321                   


Q ss_pred             HHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009033          456 VLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI  493 (546)
Q Consensus       456 vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~  493 (546)
                            |-+ ..+.|.++++++++.+++..++....|.
T Consensus       219 ------g~~-~~~~~~~~~~l~~~~vv~~~la~~~fr~  249 (253)
T TIGR01291       219 ------GGP-GTQVGLHLGALCLYAVVPFFISAALLRR  249 (253)
T ss_pred             ------CCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  111 1124567888888888887777655544

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.14  E-value=8.5e-11  Score=106.17  Aligned_cols=57  Identities=39%  Similarity=0.721  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS   63 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPts   63 (546)
                      .+++++++++.+++.+..++.++. ..+.||||||||++||++|+.+|++++|||||+
T Consensus        81 ~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   81 SDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            456789999999999998998865 447899999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.13  E-value=8.7e-11  Score=124.88  Aligned_cols=109  Identities=23%  Similarity=0.352  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      ...+.+..+|..+||....++.    ..+.||+|||+||..|+.++..|.||+|||||+|||..+...+-+.|.+.-   
T Consensus       484 ~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---  556 (614)
T KOG0927|consen  484 KELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---  556 (614)
T ss_pred             chHHHHHHHHHHhCCCcccccc----chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---
Confidence            3456778899999998444332    446799999999999999999999999999999999999888888877663   


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeE-EEecChhH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETSA  121 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~-v~~G~~~~  121 (546)
                      .+||.++|+- --|-+.+++|.+-.+|.+ .+.|+...
T Consensus       557 Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i~~  593 (614)
T KOG0927|consen  557 GGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDIEI  593 (614)
T ss_pred             Cceeeeechh-hHHHHHHHHhHhhccCceeecCccHHH
Confidence            4899999994 678888999998876654 56676554

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.12  E-value=6.2e-11  Score=116.74  Aligned_cols=83  Identities=17%  Similarity=0.141  Sum_probs=71.2

Q ss_pred             cCCCCHHHHHHHHHHHHH--HhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeE
Q 009033           32 LRGISGGERRRVSIALEI--LMRPRLLFLDEP---TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRL  105 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l--~~~P~il~LDEP---tsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v  105 (546)
                      .+++|.|+++++.+++.+  +++|++++||||   |++||+.+....  .++.+.+ .|.++|++||.  .++.+++|++
T Consensus        87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~  162 (222)
T cd03285          87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEV  162 (222)
T ss_pred             hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcC
Confidence            357999999999999999  899999999999   999999888543  3455554 58999999996  5889999999


Q ss_pred             EEEeCCeEEEecC
Q 009033          106 YLLSGGKTVYFGE  118 (546)
Q Consensus       106 ~lL~~G~~v~~G~  118 (546)
                      ..+++|++.+.++
T Consensus       163 ~~i~~g~~~~~~~  175 (222)
T cd03285         163 PNVKNLHVTALTD  175 (222)
T ss_pred             CCeEEEEEEEEEe
Confidence            9999999987764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.11  E-value=1.7e-08  Score=99.81  Aligned_cols=220  Identities=13%  Similarity=0.042  Sum_probs=133.0

Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHh-hhhhHHHHHHHHHHHHhhhhhhHHhhhH--HHHHHhhCCCcc
Q 009033          238 SRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILA-RGSCASFVFGFVTFMSIGGFPSFVEDMK--VFQRERLNGHYG  314 (546)
Q Consensus       238 ~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~-r~~~lf~~~~~~~f~~~~~~p~~~~er~--vf~RE~~~g~Y~  314 (546)
                      +|||.....-+.+-+++-+..+.+|-+.. +.+..+. -.+.+.+...+.+.  +..--....||+  .+.|=+.. =.+
T Consensus         2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~er~~G~l~rl~~~-P~~   77 (232)
T TIGR00025         2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAF--TGQAIAVARDRRYGALKRLGAT-PLP   77 (232)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHH--HHHHHHHHHHHHhCHHHHHhcC-CCc
Confidence            68998888888888887777777776521 1111111 11111111111111  111112334443  34444433 337


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHH
Q 009033          315 VTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVP---NFLMGIITGAG  391 (546)
Q Consensus       315 ~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~p---~~~~a~~~~~~  391 (546)
                      ...|+++|++..++..++..+++. +++++.|++...... ..++...+....+.+++.+++++.+   +.+.+..+++.
T Consensus        78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~  155 (232)
T TIGR00025        78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL  155 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            899999999998888776655554 556777887654332 2222333344445566666666664   34444667777


Q ss_pred             HHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHHHHhhhcCcccccchhH
Q 009033          392 IQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWI  471 (546)
Q Consensus       392 ~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~vL~~~~~~~~~~~~w~  471 (546)
                      +..+++++||.+.|.+.+|+ +++ |+.+++|++|+.+++-.--. |                       +-+ ....|.
T Consensus       156 ~~~p~~~lSG~~~P~~~mP~-~lq-~i~~~~P~t~~~~~~r~~~~-~-----------------------~~~-~~~~~~  208 (232)
T TIGR00025       156 VWFIFALLSAGLVPLNLIPT-WIK-WFVRVQPSSYATEALRQAAT-V-----------------------SVD-TFGAVR  208 (232)
T ss_pred             HHHHHHHHhheeeecccccH-HHH-HHHHhCcHHHHHHHHHHHHc-C-----------------------CCC-hhhHHH
Confidence            88889999999999999997 344 49999999999997654211 1                       001 123677


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 009033          472 DLSVIFSMIISYRIIFFVM  490 (546)
Q Consensus       472 ~~~iL~~~~~~f~~l~~~~  490 (546)
                      ++++++++.+++..++...
T Consensus       209 ~~~~l~~~~~v~~~la~~~  227 (232)
T TIGR00025       209 DLVVVLAFWVALAALAAIR  227 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888888888876665443

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.09  E-value=8e-10  Score=122.43  Aligned_cols=90  Identities=30%  Similarity=0.400  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE--
Q 009033           33 RGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL--  108 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL--  108 (546)
                      .+|||||.||+-+|..+-++=  =+.+||||+-||.+..-.+++++|++|...|-|+|++.||+  ++...+|+|+=+  
T Consensus       480 ~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGP  557 (935)
T COG0178         480 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGP  557 (935)
T ss_pred             CCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCC
Confidence            469999999999999997763  46799999999999999999999999999999999999994  788999999987  


Q ss_pred             ----eCCeEEEecChhHHHH
Q 009033          109 ----SGGKTVYFGETSAAFE  124 (546)
Q Consensus       109 ----~~G~~v~~G~~~~~~~  124 (546)
                          .+|+|++.|+++++.+
T Consensus       558 gAG~~GGeIv~~Gtp~~i~~  577 (935)
T COG0178         558 GAGEHGGEIVAEGTPEELLA  577 (935)
T ss_pred             CCCcCCCEEEEccCHHHHHh
Confidence                4799999999999864

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.09  E-value=4.8e-08  Score=97.90  Aligned_cols=208  Identities=11%  Similarity=0.039  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccC-CCChhhHH--hhhhhHHHHHHHHHHH----Hhhhhhh
Q 009033          224 MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTGYNSIL--ARGSCASFVFGFVTFM----SIGGFPS  296 (546)
Q Consensus       224 ~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l-~~~~~~i~--~r~~~lf~~~~~~~f~----~~~~~p~  296 (546)
                      +++..+++|.++...|||..+..-++.-+++.+++|.+|... +.+.....  +..-..|.+.+...+.    +...-..
T Consensus         2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~~   81 (253)
T TIGR03861         2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSLS   81 (253)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            578999999999999999999999999999999999988542 11000000  0011122222221111    1111112


Q ss_pred             HHhhh--HHHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009033          297 FVEDM--KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMA  374 (546)
Q Consensus       297 ~~~er--~vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~  374 (546)
                      ...||  ....+=+... -+...+.+++++..+-..++..++..++.+. .|.+.+...++.....+++......++|++
T Consensus        82 ~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~  159 (253)
T TIGR03861        82 MVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLA  159 (253)
T ss_pred             hHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            22222  2333334333 3778899999999987777776665555443 366655444433334444455667789999


Q ss_pred             HHHhccchHHHHHHHHHHHHHHHHHhccccCCCCCCc-cccccccccccHHHHHHHHHHH
Q 009033          375 IASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPK-PVWRYPMSYLSFHYWALQGQYQ  433 (546)
Q Consensus       375 i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~-~~W~~~~~yiS~~~Ya~~~l~~  433 (546)
                      ++.++++......+.+.+..+++..+|.+-+.+.+|. +-|..|+.+++|..|..|++-.
T Consensus       160 la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~  219 (253)
T TIGR03861       160 LSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF  219 (253)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence            9999999877777777778888888999988777642 1254458889999999987653

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.08  E-value=2.9e-10  Score=133.36  Aligned_cols=78  Identities=29%  Similarity=0.281  Sum_probs=69.0

Q ss_pred             ccCCCCHHHHHHH------HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 009033           31 HLRGISGGERRRV------SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR  104 (546)
Q Consensus        31 ~~~~lSgGer~Rv------sia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~  104 (546)
                      .+..|||||++++      ++|++++.+|+++++||||+|||+..+..+.+.|..++..|.+||++||++  ++...||+
T Consensus       785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~  862 (880)
T PRK03918        785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY  862 (880)
T ss_pred             ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence            5678999999954      555677889999999999999999999999999999887788999999996  47789999


Q ss_pred             EEEEeC
Q 009033          105 LYLLSG  110 (546)
Q Consensus       105 v~lL~~  110 (546)
                      +++|..
T Consensus       863 ~~~l~~  868 (880)
T PRK03918        863 VIRVSL  868 (880)
T ss_pred             EEEEEe
Confidence            999983

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.05  E-value=5.6e-10  Score=132.54  Aligned_cols=80  Identities=29%  Similarity=0.278  Sum_probs=69.7

Q ss_pred             cccCCCCHHHHHHHHHHHHHHh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 009033           30 WHLRGISGGERRRVSIALEILM--------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL  101 (546)
Q Consensus        30 ~~~~~lSgGer~Rvsia~~l~~--------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~  101 (546)
                      ..+++|||||+++++||++|+.        +|++||+||||+|||+.+...+++.|..+++.|+||++++|.+ .....+
T Consensus       945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246        945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence            4578899999999999999995        8999999999999999999999999999998999999999974 445555


Q ss_pred             cCeEEEEeC
Q 009033          102 FDRLYLLSG  110 (546)
Q Consensus       102 ~D~v~lL~~  110 (546)
                      -.+|.|-..
T Consensus      1024 ~~qi~V~k~ 1032 (1047)
T PRK10246       1024 PVQIKVKKI 1032 (1047)
T ss_pred             cceEEEEEC
Confidence            566666653

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=98.99  E-value=1e-09  Score=111.26  Aligned_cols=77  Identities=17%  Similarity=0.247  Sum_probs=63.4

Q ss_pred             cCCCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033           32 LRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~  102 (546)
                      .+-+|+||||++++|++|+         .+|+++++||||++||+..+..+.+.|+++.   .+ ++++|+. .++.+++
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~-~~~~~~~  255 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDL-ADFDALW  255 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCc-hhccchh
Confidence            3457999999999999985         6999999999999999999999999998763   34 4555542 4566776


Q ss_pred             ---CeEEEEeCCeE
Q 009033          103 ---DRLYLLSGGKT  113 (546)
Q Consensus       103 ---D~v~lL~~G~~  113 (546)
                         ++++.+++|++
T Consensus       256 ~~~~~i~~l~~g~i  269 (270)
T cd03242         256 LRRAQIFRVDAGTL  269 (270)
T ss_pred             ccCccEEEEeCcEE
Confidence               78999999985

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK01156 chromosome segregation protein; Provisional

Probab=98.98  E-value=3.1e-09  Score=124.97  Aligned_cols=77  Identities=26%  Similarity=0.336  Sum_probs=66.8

Q ss_pred             ccCCCCHHHHHHHHH------HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEecCCchHHHhh
Q 009033           31 HLRGISGGERRRVSI------ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RD-G-RTVIASIHQPSSEVFEL  101 (546)
Q Consensus        31 ~~~~lSgGer~Rvsi------a~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~-~~-g-~tvi~~~H~p~~~i~~~  101 (546)
                      .+..||||||+|++|      |++++.+|++++|||||+|||+.....+.+.++... .. | .|+|++||++  +....
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~  875 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSV  875 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHh
Confidence            467899999999976      488899999999999999999999999999998754 33 3 4899999996  35689


Q ss_pred             cCeEEEEe
Q 009033          102 FDRLYLLS  109 (546)
Q Consensus       102 ~D~v~lL~  109 (546)
                      ||+++.+.
T Consensus       876 ~d~ii~~~  883 (895)
T PRK01156        876 ADVAYEVK  883 (895)
T ss_pred             cCeEEEEE
Confidence            99999997

>PRK15066 inner membrane transport permease; Provisional

Probab=98.96  E-value=2.1e-07  Score=93.59  Aligned_cols=242  Identities=11%  Similarity=0.124  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHH----Hhhh-hhh
Q 009033          223 LMQAFTLTKRSFVNMSRDFGY-YWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM----SIGG-FPS  296 (546)
Q Consensus       223 ~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~----~~~~-~p~  296 (546)
                      ++-+..+.+|.++...||+.. ...-+++.++..+++|.++-....+..+.   .-..|++.+...+.    ++.. -..
T Consensus         7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~---~y~~fl~pGll~~~~~~~~~~~~~~~   83 (257)
T PRK15066          7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGF---SYMQFIVPGLIMMSVITNSYSNVASS   83 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999854 33334555566666666653210110111   11223322222221    1111 122


Q ss_pred             HHhhh--HHHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009033          297 FVEDM--KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMA  374 (546)
Q Consensus       297 ~~~er--~vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~  374 (546)
                      +.+++  +...|=+. ---+...+.+++++...-..++..++...+.+...|.+...  ...+...+++...+....+++
T Consensus        84 i~~~~~~~~~~~l~v-tp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~~~gl~  160 (257)
T PRK15066         84 FFSAKFQRNIEELLV-SPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFSLGGLI  160 (257)
T ss_pred             HHHHHHhhhHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHHHHHHH
Confidence            33333  11111111 23477889999999887666666666655555555665432  222222222222223334788


Q ss_pred             HHHhccchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHH
Q 009033          375 IASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGE  454 (546)
Q Consensus       375 i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~  454 (546)
                      ++.+.++..-...+.+.+..+++..||.+-+.+.+|+  |..++.+++|.+|..|++-..-+                  
T Consensus       161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~------------------  220 (257)
T PRK15066        161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFL------------------  220 (257)
T ss_pred             HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHc------------------
Confidence            8888888777677777788888899999999999997  54458999999999987753211                  


Q ss_pred             HHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 009033          455 YVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT  498 (546)
Q Consensus       455 ~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~  498 (546)
                             |.+ +.+.|.++++++++.+++..++....|..++.+
T Consensus       221 -------g~~-~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~~  256 (257)
T PRK15066        221 -------GIS-DVPLWLAFAVLLVFIVVLYLLAWYLLERGRGLR  256 (257)
T ss_pred             -------CCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence                   111 123588899999999988888887777666554

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=2.2e-09  Score=111.34  Aligned_cols=93  Identities=27%  Similarity=0.404  Sum_probs=74.8

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 009033            9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI   88 (546)
Q Consensus         9 ~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi   88 (546)
                      .+...|-.+||...++|+    .++.||||||-||.+|.--+..|++|||||||++||..+...+-+.+.+.   ...||
T Consensus       683 ~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi  755 (807)
T KOG0066|consen  683 EARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVI  755 (807)
T ss_pred             HHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEE
Confidence            345677889999999885    57889999999999999999999999999999999999988888877766   35799


Q ss_pred             EEecCCchHHHhhcCeEEEEe
Q 009033           89 ASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        89 ~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      +++|+-. -+.+--..+.++.
T Consensus       756 ~VsHDeR-Li~eT~C~LwVvE  775 (807)
T KOG0066|consen  756 MVSHDER-LIVETDCNLWVVE  775 (807)
T ss_pred             EEecccc-eeeecCceEEEEc
Confidence            9999943 3434344455554

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.91  E-value=2.9e-09  Score=101.02  Aligned_cols=110  Identities=26%  Similarity=0.314  Sum_probs=92.0

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRT   86 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~t   86 (546)
                      +|-+++++.|++.-       .|+.+.+|-||||||.|++-|++--++|+|||-|-.||..++.++++.||+-++ .|.|
T Consensus       128 ~Rre~LI~iLDIdl-------~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rgat  200 (291)
T KOG2355|consen  128 ERREKLIDILDIDL-------RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGAT  200 (291)
T ss_pred             hHhhhhhhheeccc-------eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcE
Confidence            34456666666532       234566999999999999999999999999999999999999999999999986 6999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF  125 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~  125 (546)
                      |+..||- -.-+.....++..++.|+++-.-+.++..++
T Consensus       201 IVYATHI-FDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~  238 (291)
T KOG2355|consen  201 IVYATHI-FDGLETWPTHLVYIKSGKLVDNLKYQKIKEF  238 (291)
T ss_pred             EEEEeee-ccchhhcchhEEEecCCeeeeccccchhhhh
Confidence            9999998 4678889999999999999876665555443

>TIGR00606 rad50 rad50

Probab=98.91  E-value=2.3e-09  Score=130.34  Aligned_cols=69  Identities=22%  Similarity=0.243  Sum_probs=61.8

Q ss_pred             CCCCHHHHH------HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCchHHHhh
Q 009033           33 RGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIHQPSSEVFEL  101 (546)
Q Consensus        33 ~~lSgGer~------Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-----~g~tvi~~~H~p~~~i~~~  101 (546)
                      ..|||||||      |++||++++.+|++|+|||||+|||+.+...+.+.|..+..     .|.|||+++|++ ..+..+
T Consensus      1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~ 1276 (1311)
T TIGR00606      1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELL 1276 (1311)
T ss_pred             CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHH
Confidence            469999999      99999999999999999999999999999999999988742     478999999995 667665


Q ss_pred             c
Q 009033          102 F  102 (546)
Q Consensus       102 ~  102 (546)
                      +
T Consensus      1277 ~ 1277 (1311)
T TIGR00606      1277 G 1277 (1311)
T ss_pred             h
Confidence            4

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.90  E-value=2.1e-09  Score=110.59  Aligned_cols=109  Identities=25%  Similarity=0.314  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCC
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~-l~~~g~   85 (546)
                      .+.++..++.+.|.+.-.-.=|+-..-.||.|||||++.-.+++-+-+|+++||=-+..||.=+..+.+.+-. +.++|+
T Consensus       421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK  500 (546)
T COG4615         421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK  500 (546)
T ss_pred             hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence            3567888888888765444334434567999999999999999999999999999999999999999987655 566899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG  117 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G  117 (546)
                      ||+.++||  +.-|..+||++.+++|+++..-
T Consensus       501 TI~aIsHD--d~YF~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         501 TIFAISHD--DHYFIHADRLLEMRNGQLSELT  530 (546)
T ss_pred             eEEEEecC--chhhhhHHHHHHHhcCceeecc
Confidence            99999999  4679999999999999998653

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.85  E-value=3.9e-09  Score=127.03  Aligned_cols=76  Identities=28%  Similarity=0.374  Sum_probs=66.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE
Q 009033           31 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY  106 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~  106 (546)
                      .+..||||||+|++||++++    ..|++++|||||+|||+.+...+.+.|+.+++. .++|+++|++.  ....+|+++
T Consensus      1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168      1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-TQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred             cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-CEEEEEEcChh--HHHHhhhHe
Confidence            56789999999999999985    567999999999999999999999999999754 78999999973  457899998


Q ss_pred             EEe
Q 009033          107 LLS  109 (546)
Q Consensus       107 lL~  109 (546)
                      .+.
T Consensus      1163 ~~~ 1165 (1179)
T TIGR02168      1163 GVT 1165 (1179)
T ss_pred             eee
Confidence            664

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.83  E-value=8.3e-09  Score=100.03  Aligned_cols=86  Identities=15%  Similarity=0.135  Sum_probs=70.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033           33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  111 (546)
                      ..++++++ +++.+.+++.+|+++++||||+|+|+.....+.. .++.+.+.+.++|+++|++  ++.+.+|++..+..|
T Consensus        90 s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~  166 (202)
T cd03243          90 STFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNL  166 (202)
T ss_pred             eeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEE
Confidence            34555555 5777788899999999999999999999888865 4677777789999999984  677889999999999


Q ss_pred             eEEEecChhH
Q 009033          112 KTVYFGETSA  121 (546)
Q Consensus       112 ~~v~~G~~~~  121 (546)
                      ++...++.++
T Consensus       167 ~~~~~~~~~~  176 (202)
T cd03243         167 HMEELITTGG  176 (202)
T ss_pred             EEEEEecCCe
Confidence            9998886543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK00064 recF recombination protein F; Reviewed

Probab=98.82  E-value=9.8e-09  Score=108.39  Aligned_cols=79  Identities=22%  Similarity=0.343  Sum_probs=66.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 009033           31 HLRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL  101 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~  101 (546)
                      ....+|+||+|++.+|..|+         .+|+|++||||+++||+..+..+++.++++   +..+++|+|++ ..+...
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~-~~~~~~  345 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDL-EDLADL  345 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCCh-hhhhhh
Confidence            44578999999999999886         699999999999999999999999988765   35788888885 455555


Q ss_pred             c--CeEEEEeCCeE
Q 009033          102 F--DRLYLLSGGKT  113 (546)
Q Consensus       102 ~--D~v~lL~~G~~  113 (546)
                      +  +++..+.+|++
T Consensus       346 ~~~~~i~~v~~G~i  359 (361)
T PRK00064        346 LENAKIFHVEQGKI  359 (361)
T ss_pred             hccCcEEEEeCCEE
Confidence            3  57899999986

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=2e-09  Score=111.60  Aligned_cols=105  Identities=27%  Similarity=0.415  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      ..++.++|.-||.+. ..++     ....+|||-|-|||+||+|..+|.+|.|||||+.||-.+...+-+.|+.+.+   
T Consensus       389 EarARRILAGLGFskEMQ~r-----Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK---  460 (807)
T KOG0066|consen  389 EARARRILAGLGFSKEMQER-----PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK---  460 (807)
T ss_pred             hhHHHHHHhhcCCChhHhcC-----CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh---
Confidence            345667788888763 3444     4457999999999999999999999999999999999999999999999874   


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEE-ecChh
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVY-FGETS  120 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~-~G~~~  120 (546)
                      |.++++|+ ...+-..|..|+.|++-+.-| .|...
T Consensus       461 TLLIVSHD-QgFLD~VCtdIIHLD~qkLhyYrGNY~  495 (807)
T KOG0066|consen  461 TLLIVSHD-QGFLDSVCTDIIHLDNQKLHYYRGNYT  495 (807)
T ss_pred             eeEEEecc-cchHHHHHHHHhhhhhhhhhhhcchHH
Confidence            99999999 578889999999998777644 46544

>PRK02224 chromosome segregation protein; Provisional

Probab=98.77  E-value=1.7e-08  Score=118.62  Aligned_cols=78  Identities=29%  Similarity=0.359  Sum_probs=67.1

Q ss_pred             cCCCCHHHHH------HHHHHHHHHhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCchHH
Q 009033           32 LRGISGGERR------RVSIALEILMR-----P-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR-TVIASIHQPSSEV   98 (546)
Q Consensus        32 ~~~lSgGer~------Rvsia~~l~~~-----P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~-tvi~~~H~p~~~i   98 (546)
                      +..||||||+      |++++++++.+     | +++++||||+|||+.....+.+.|+.++..|. +||++||++  +.
T Consensus       779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~  856 (880)
T PRK02224        779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL  856 (880)
T ss_pred             hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence            5689999999      89999888864     3 67999999999999999999999999987664 899999996  34


Q ss_pred             HhhcCeEEEEeCC
Q 009033           99 FELFDRLYLLSGG  111 (546)
Q Consensus        99 ~~~~D~v~lL~~G  111 (546)
                      ...+|+++.+.+.
T Consensus       857 ~~~ad~~~~~~~~  869 (880)
T PRK02224        857 VGAADDLVRVEKD  869 (880)
T ss_pred             HHhcCeeEEeecC
Confidence            5789999999643

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.76  E-value=5.9e-09  Score=99.75  Aligned_cols=81  Identities=16%  Similarity=0.106  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~-~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      ..+|+|++|...+. ..+++|+++++|||++|+|+.....+. ..++.+.++ |.++|++||++  ++.+++|+.--+.+
T Consensus        60 s~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~  136 (185)
T smart00534       60 STFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN  136 (185)
T ss_pred             cHHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence            35777766533333 234599999999999999999888875 556778774 89999999995  68888876444445


Q ss_pred             CeEEEe
Q 009033          111 GKTVYF  116 (546)
Q Consensus       111 G~~v~~  116 (546)
                      ++..+.
T Consensus       137 ~~~~~~  142 (185)
T smart00534      137 LHMSAD  142 (185)
T ss_pred             EEEEEE
Confidence            554443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.76  E-value=1.3e-08  Score=122.49  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=68.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE
Q 009033           31 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY  106 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~  106 (546)
                      .+..||||||++++||..++.    .|++++||||++|||+.++..+.++|+.+++. .++|++||++  .....+|+++
T Consensus      1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169      1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-AQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred             cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-CeEEEEECcH--HHHHhcceeE
Confidence            456899999999999999985    67999999999999999999999999998754 7899999996  4679999999


Q ss_pred             EEeC
Q 009033          107 LLSG  110 (546)
Q Consensus       107 lL~~  110 (546)
                      .+..
T Consensus      1148 ~~~~ 1151 (1164)
T TIGR02169      1148 GVTM 1151 (1164)
T ss_pred             eEEE
Confidence            8863

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=98.69  E-value=5e-08  Score=104.95  Aligned_cols=102  Identities=23%  Similarity=0.278  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDCADTVIG------NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig------~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++++.+.|+.++|.|..++.=|      -+....||+||+||++.||.+.++|++-+|||.||.+|......+.+.+++.
T Consensus       537 d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~  616 (659)
T KOG0060|consen  537 DEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM  616 (659)
T ss_pred             HHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence            4677888888888877655322      1234579999999999999999999999999999999999988888776654


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeC-CeE
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKT  113 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~-G~~  113 (546)
                         |.|.|.+.|.++  +.+.-|.++-|++ |+.
T Consensus       617 ---giT~iSVgHRkS--L~kfHd~~L~~~g~g~w  645 (659)
T KOG0060|consen  617 ---GITFISVGHRKS--LWKFHDYVLRMDGRGSW  645 (659)
T ss_pred             ---CCeEEEeccHHH--HHhhhhEEEEecCCCce
Confidence               899999999863  6677788888874 443

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.61  E-value=2.8e-07  Score=90.27  Aligned_cols=88  Identities=31%  Similarity=0.425  Sum_probs=66.0

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +.+.+.+...++...           .+|||||.+++||.-|+    ...++++||||.++||...+..+.++|+++.++
T Consensus       121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~  189 (220)
T PF02463_consen  121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ  189 (220)
T ss_dssp             HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT
T ss_pred             ccccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445556666665432           49999999999987764    356899999999999999999999999999754


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                       .-+|++||++  ++++.+|+.+.+.
T Consensus       190 -~Q~ii~Th~~--~~~~~a~~~~~v~  212 (220)
T PF02463_consen  190 -SQFIITTHNP--EMFEDADKLIGVT  212 (220)
T ss_dssp             -SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred             -cccccccccc--ccccccccccccc
Confidence             6788999984  7899999988774

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.57  E-value=1.6e-07  Score=97.50  Aligned_cols=100  Identities=29%  Similarity=0.390  Sum_probs=83.7

Q ss_pred             HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Q 009033           10 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVI   88 (546)
Q Consensus        10 v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi   88 (546)
                      ..++++..||.+-.--   ....+.||-|||.|+.||..+..+|++++.||--+.||..++..+.+-+.++++ .|.|.+
T Consensus       486 AveILnraGlsDAvly---Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTli  562 (593)
T COG2401         486 AVEILNRAGLSDAVLY---RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI  562 (593)
T ss_pred             HHHHHHhhccchhhhh---hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence            4578888898753211   124568999999999999999999999999999999999999999999999997 599999


Q ss_pred             EEecCCchHHHhh-cCeEEEEeCCeE
Q 009033           89 ASIHQPSSEVFEL-FDRLYLLSGGKT  113 (546)
Q Consensus        89 ~~~H~p~~~i~~~-~D~v~lL~~G~~  113 (546)
                      +++|.| +-+-++ =|.++++.-|.+
T Consensus       563 vvThrp-Ev~~AL~PD~li~vgYg~v  587 (593)
T COG2401         563 VVTHRP-EVGNALRPDTLILVGYGKV  587 (593)
T ss_pred             EEecCH-HHHhccCCceeEEeecccc
Confidence            999997 445555 588888876654

>TIGR00611 recf recF protein

Probab=98.55  E-value=1.2e-07  Score=100.17  Aligned_cols=59  Identities=25%  Similarity=0.334  Sum_probs=54.7

Q ss_pred             CCCCHHHHHHHHHHHHHHh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009033           33 RGISGGERRRVSIALEILM---------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP   94 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~---------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p   94 (546)
                      .-+|.||+|++.+|..|+.         +|+||+||||+++||+..+..+++.|++.   |.+|++|+|++
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~  341 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISL  341 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecCh
Confidence            4589999999999999999         99999999999999999999999999764   67999999986

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.54  E-value=1.3e-07  Score=98.42  Aligned_cols=99  Identities=28%  Similarity=0.354  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            6 KRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      .++..+++++.+.|.+..|+-+.     .|||||-||.+||++-+.+.++.++|||.+-||...+..--..++.+....+
T Consensus       190 ~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~  264 (592)
T KOG0063|consen  190 ERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDR  264 (592)
T ss_pred             hcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCC
Confidence            34466788999999988888554     5999999999999999999999999999999999999999999999999889


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeC
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      -||++.||. +-.--+.|-+++|.+
T Consensus       265 YiIVVEHDL-sVLDylSDFiCcLYG  288 (592)
T KOG0063|consen  265 YIIVVEHDL-SVLDYLSDFICCLYG  288 (592)
T ss_pred             eEEEEEeec-hHHHhhhcceeEEec
Confidence            999999995 667778999999974

>PRK14079 recF recombination protein F; Provisional

Probab=98.53  E-value=1.9e-07  Score=98.14  Aligned_cols=74  Identities=23%  Similarity=0.254  Sum_probs=62.6

Q ss_pred             CCCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 009033           33 RGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD  103 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D  103 (546)
                      .-+|+||+|++.+|..|+         .+|++++||||+++||...+..+.+.|....   .++|.+++.|     ..+|
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~  333 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAA  333 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCc
Confidence            347999999999999998         8999999999999999999999998886542   4566656543     5799


Q ss_pred             eEEEEeCCeEE
Q 009033          104 RLYLLSGGKTV  114 (546)
Q Consensus       104 ~v~lL~~G~~v  114 (546)
                      +++.+.+|++-
T Consensus       334 ~~~~~~~~~~~  344 (349)
T PRK14079        334 LTLRIEAGVFT  344 (349)
T ss_pred             eEEEEeccEec
Confidence            99999998864

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.52  E-value=2.8e-07  Score=108.52  Aligned_cols=87  Identities=33%  Similarity=0.358  Sum_probs=74.0

Q ss_pred             ccccccCc--ccCCCCHHHHHHHHHHHHHH------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 009033           23 ADTVIGNW--HLRGISGGERRRVSIALEIL------MR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH   92 (546)
Q Consensus        23 ~~~~ig~~--~~~~lSgGer~Rvsia~~l~------~~--P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H   92 (546)
                      .++..|+.  .+..|||||+-.++||.+|+      .+  =+.|||||||..||+.+...++++|..+...|.+|+++||
T Consensus       802 ~~~~~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH  881 (908)
T COG0419         802 VVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISH  881 (908)
T ss_pred             EEEecCCCccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            34444433  67889999999988887774      34  5899999999999999999999999999999999999999


Q ss_pred             CCchHHHhhcCeEEEEeCC
Q 009033           93 QPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        93 ~p~~~i~~~~D~v~lL~~G  111 (546)
                      ++  ++-+.+|.++.+...
T Consensus       882 ~e--el~e~~~~~i~V~k~  898 (908)
T COG0419         882 VE--ELKERADVRIRVKKD  898 (908)
T ss_pred             hH--HHHHhCCeEEEEEec
Confidence            94  788999999999743

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=98.48  E-value=1.8e-05  Score=79.12  Aligned_cols=166  Identities=13%  Similarity=0.182  Sum_probs=114.8

Q ss_pred             HHHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Q 009033          302 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA-SIVP  380 (546)
Q Consensus       302 ~vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~-~~~p  380 (546)
                      ..+.|=..+...+ ..+++++.+...-...+...+...++.+..|.. ....+..+...+.+......++|.+++ ....
T Consensus       118 g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  195 (286)
T COG0842         118 GTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKS  195 (286)
T ss_pred             CcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344444444433 556677777777676666666666667777732 223344444455555666667777555 3667


Q ss_pred             chHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHHHHhhh
Q 009033          381 NFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENV  460 (546)
Q Consensus       381 ~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~vL~~~  460 (546)
                      +...+..++..+..++..++|.+.+.+.+|+  |..++.++.|.+|+.+++-.....                       
T Consensus       196 ~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~-----------------------  250 (286)
T COG0842         196 QLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLG-----------------------  250 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhC-----------------------
Confidence            7888888888888899999999999999997  544588999999999987754321                       


Q ss_pred             cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009033          461 FQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED  496 (546)
Q Consensus       461 ~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~  496 (546)
                       +.. ..+.|.++++++++.+++.+++...+|..++
T Consensus       251 -~~~-~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~  284 (286)
T COG0842         251 -GWR-NDGIWISLLILLLFAVVFLLLGLLLLRRRRK  284 (286)
T ss_pred             -CCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             111 1127888999999999999999888876654

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.44  E-value=4.3e-07  Score=88.33  Aligned_cols=67  Identities=21%  Similarity=0.342  Sum_probs=53.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033           33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~-~~L~~l~~~g~tvi~~~H~p~~~i~~~~  102 (546)
                      ..+|+|++|+ +.+..++++|+++++|||++|+|+.....+. ..++.+.+.|.++|++||+.  ++.+..
T Consensus        90 S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~--~l~~~~  157 (204)
T cd03282          90 STFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR--DIAAIL  157 (204)
T ss_pred             hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH--HHHHHh
Confidence            4588888865 5556788999999999999999998876664 46778888899999999984  444443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.42  E-value=1.2e-06  Score=84.96  Aligned_cols=71  Identities=24%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHh--CCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhh--cCeEEEE
Q 009033           37 GGERRRVSIALEILM--RPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFEL--FDRLYLL  108 (546)
Q Consensus        37 gGer~Rvsia~~l~~--~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~--~D~v~lL  108 (546)
                      ..|.+|+.-+.+.+.  +|+++++|||++|+|+..+..+.. .++.+.+.|.|+|+++|++ ..+..+  .+++..+
T Consensus        88 ~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~~  163 (199)
T cd03283          88 YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRNY  163 (199)
T ss_pred             HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence            356677777777777  999999999999999999988764 7888888899999999996 455444  3445443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.40  E-value=7.4e-07  Score=84.57  Aligned_cols=80  Identities=20%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             cccCCCCHHHHH------HHHHHHHHHhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCch----
Q 009033           30 WHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLD---SAAAFFVTQTLRCLSRDGRTVIASIHQPSS----   96 (546)
Q Consensus        30 ~~~~~lSgGer~------Rvsia~~l~~~P~il~LDEPtsgLD---~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~----   96 (546)
                      ..+..+|+||+|      +.........+|+++++|||++.+|   ......+.+.++.+++.|.|+|+++|....    
T Consensus        67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~  146 (187)
T cd01124          67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG  146 (187)
T ss_pred             cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc
Confidence            455678999988      4444444567999999999999999   888888899999999889999999998543    


Q ss_pred             ----HHHhhcCeEEEEe
Q 009033           97 ----EVFELFDRLYLLS  109 (546)
Q Consensus        97 ----~i~~~~D~v~lL~  109 (546)
                          .+..++|.++.|+
T Consensus       147 ~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         147 FGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             cCcCceeEeeeEEEEEE
Confidence                2678899999886

A related protein is found in archaea.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.33  E-value=1.6e-06  Score=84.46  Aligned_cols=63  Identities=30%  Similarity=0.457  Sum_probs=54.3

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009033           32 LRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP   94 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p   94 (546)
                      ...+|.|+||.+.+...+...+   .++++|||-++|+|..+..+++.|+.+++.+.-+|+|||.|
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp  299 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP  299 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence            4567999999999999988776   89999999999999999999999999887778999999987

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.31  E-value=4.5e-07  Score=96.62  Aligned_cols=85  Identities=25%  Similarity=0.275  Sum_probs=68.8

Q ss_pred             HHHHHHHHHcCCcccccccccC----cccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            8 TLVERTIIEMGLQDCADTVIGN----WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~----~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +..+.+++.+.|++...+-.|=    ....-||||||||+++||.+-++|+.-+|||.||...+.....+.+..|.   .
T Consensus       582 ~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~  658 (728)
T KOG0064|consen  582 QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---A  658 (728)
T ss_pred             HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---c
Confidence            4466778888888776665441    23346999999999999999999999999999999988877777776554   4


Q ss_pred             CCEEEEEecCCc
Q 009033           84 GRTVIASIHQPS   95 (546)
Q Consensus        84 g~tvi~~~H~p~   95 (546)
                      |.+.+.++|+|+
T Consensus       659 gi~llsithrps  670 (728)
T KOG0064|consen  659 GISLLSITHRPS  670 (728)
T ss_pred             CceEEEeecCcc
Confidence            899999999995

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.27  E-value=1.2e-06  Score=106.60  Aligned_cols=60  Identities=30%  Similarity=0.402  Sum_probs=52.8

Q ss_pred             cCCCCHHHHHHHH----HHHH--------HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009033           32 LRGISGGERRRVS----IALE--------ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP   94 (546)
Q Consensus        32 ~~~lSgGer~Rvs----ia~~--------l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p   94 (546)
                      ..+||||||||+.    +|++        +..+|++++|||||+|||+.++..+++.++++   |.++|+++|..
T Consensus      1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence            4689999999996    4644        45899999999999999999999999999988   67899999873

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.26  E-value=1.4e-06  Score=85.45  Aligned_cols=86  Identities=21%  Similarity=0.210  Sum_probs=63.4

Q ss_pred             CCCCHHHHHH----HHHHHHH--HhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCchHHHhhc
Q 009033           33 RGISGGERRR----VSIALEI--LMRPRLLFLDEP---TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        33 ~~lSgGer~R----vsia~~l--~~~P~il~LDEP---tsgLD~~~~~~v~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~  102 (546)
                      ..+|+|+.+.    ..++..+  +++|++++||||   |+++|..+.  ....++.+.+. +.++|++||+.  ++.++.
T Consensus        84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~  159 (216)
T cd03284          84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELE  159 (216)
T ss_pred             hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHh
Confidence            3467776554    2355544  569999999999   888887552  23455556665 89999999994  788899


Q ss_pred             CeEEEEeCCeEEEecChhHH
Q 009033          103 DRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus       103 D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |++-.+.+|++...+..+++
T Consensus       160 ~~~~~v~~~~~~~~~~~~~l  179 (216)
T cd03284         160 GKLPRVKNFHVAVKEKGGGV  179 (216)
T ss_pred             hcCCCeEEEEEEEEeeCCeE
Confidence            99888889998887766554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.24  E-value=1.5e-06  Score=100.20  Aligned_cols=82  Identities=21%  Similarity=0.239  Sum_probs=65.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      ...+|+|+++++.|++++ ++|+++++|||++|+|+.....+.. .++.+.+.|.++|++||++ .......|+..+. +
T Consensus       388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~  464 (782)
T PRK00409        388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-N  464 (782)
T ss_pred             hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-E
Confidence            456899999999999988 8999999999999999999998865 6778888899999999995 3333444544443 4


Q ss_pred             CeEEEe
Q 009033          111 GKTVYF  116 (546)
Q Consensus       111 G~~v~~  116 (546)
                      +.+.++
T Consensus       465 ~~~~~d  470 (782)
T PRK00409        465 ASVEFD  470 (782)
T ss_pred             EEEEEe
Confidence            555554

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.22  E-value=1.5e-06  Score=90.81  Aligned_cols=95  Identities=23%  Similarity=0.392  Sum_probs=80.2

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRT   86 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~-~~g~t   86 (546)
                      +-+.++++-|.+++..|+-+     .+|||||.|||++|..|-..+++.+.|||.+-||+.++..--+.+++.- +..+|
T Consensus       435 qF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakkt  509 (592)
T KOG0063|consen  435 QFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKT  509 (592)
T ss_pred             HHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccch
Confidence            45677888888888888855     5799999999999999999999999999999999999999999999864 55789


Q ss_pred             EEEEecCCchHHHhhcCeEEEE
Q 009033           87 VIASIHQPSSEVFELFDRLYLL  108 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL  108 (546)
                      -.++.|+- --.--++||+++.
T Consensus       510 afvVEhdf-ImaTYladrvivf  530 (592)
T KOG0063|consen  510 AFVVEHDF-IMATYLADRVIVF  530 (592)
T ss_pred             hhhhhhHH-HHHHhhcceeEEE
Confidence            99999994 3344578888654

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.15  E-value=4.9e-06  Score=70.13  Aligned_cols=49  Identities=39%  Similarity=0.480  Sum_probs=37.7

Q ss_pred             ccCCCCHHHH-HHHHHHHHHH------h------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033           31 HLRGISGGER-RRVSIALEIL------M------RPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus        31 ~~~~lSgGer-~Rvsia~~l~------~------~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ...++||||| ..+.++..++      .      .|++++||||+++||+.....+++.|++
T Consensus        29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            3457999999 4455544432      2      3799999999999999999999999875

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.12  E-value=5.3e-06  Score=81.27  Aligned_cols=61  Identities=30%  Similarity=0.276  Sum_probs=51.1

Q ss_pred             CCC--HHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhC---CCEEEEEecCC
Q 009033           34 GIS--GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRD---GRTVIASIHQP   94 (546)
Q Consensus        34 ~lS--gGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v-~~~L~~l~~~---g~tvi~~~H~p   94 (546)
                      ++|  .-|.||+++++.++.+|+++++|||++|+|+.....+ ...++++.+.   +.++|++||++
T Consensus        88 ~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~  154 (213)
T cd03281          88 GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH  154 (213)
T ss_pred             ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence            445  5678999999999999999999999999999875555 5688888764   35899999995

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01248 drrC daunorubicin resistance protein C

Probab=98.10  E-value=4.8e-05  Score=70.49  Aligned_cols=128  Identities=12%  Similarity=-0.001  Sum_probs=87.8

Q ss_pred             hhHHHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009033          300 DMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGF--IHYLFFVLCLYASVAVVESLMMAIAS  377 (546)
Q Consensus       300 er~vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~--~~f~~f~l~l~l~~~~~~sl~~~i~~  377 (546)
                      |+.++.|-+..-. +.+.++++|++...-..++..++..++.+. .|.+.+.  ...+.+++...+.......++..++.
T Consensus        17 ~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~   94 (152)
T TIGR01248        17 EIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMAL   94 (152)
T ss_pred             HhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777776655 789999999999998988888877777754 4877653  22222222222223333344555554


Q ss_pred             hccchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHH
Q 009033          378 IVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQY  432 (546)
Q Consensus       378 ~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~  432 (546)
                      ..++..... ....+..+++..+|.+.+.+++|+  |..|+.+++|.+|+.+++-
T Consensus        95 ~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R  146 (152)
T TIGR01248        95 RKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACA  146 (152)
T ss_pred             HcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHH
Confidence            455544333 346667777888899999999997  7667999999999999875

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.10  E-value=0.00078  Score=67.20  Aligned_cols=189  Identities=13%  Similarity=0.111  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccC-CCChhhHHhhhhhHHHHHHHHHHHHhhhhhhHHhhhHHHH
Q 009033          227 FTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQ  305 (546)
Q Consensus       227 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l-~~~~~~i~~r~~~lf~~~~~~~f~~~~~~p~~~~er~vf~  305 (546)
                      +.+.||.++...|.|..+..-.+..++.|+. ...|.+. +....+..+....  +...  .+.-+..+|..  =+..+.
T Consensus         2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~--f~~~--~~~~~~~~p~l--~~~~ia   74 (240)
T TIGR03518         2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLF-LWVFPGDFNILDYGYADLTPF--FSLA--PWVFLFLIPAI--TMRSFA   74 (240)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHhhhhhHHhcCcchHHHH--HHHH--HHHHHHHHHHH--HHHHHH
Confidence            4678999999999998887666655555533 2222110 0000111111111  1110  01111112222  236677


Q ss_pred             HHhhCCCc--------chHHHHHHHHHHHHhHHHHHHH---HHhhhhhcccc--ccCCHHHHHHHHHHHHHHHHHHHHHH
Q 009033          306 RERLNGHY--------GVTAFVIGNTLSAMPFLIMITF---ISGTICYFMVR--LHPGFIHYLFFVLCLYASVAVVESLM  372 (546)
Q Consensus       306 RE~~~g~Y--------~~~~y~la~~l~~lP~~~l~~~---if~~i~Y~m~G--l~~~~~~f~~f~l~l~l~~~~~~sl~  372 (546)
                      +||.+|..        +...++++|.++-+-..++..+   ++....++...  -..+...++...+..++...+..++|
T Consensus        75 ~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~aig  154 (240)
T TIGR03518        75 EERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYTAIG  154 (240)
T ss_pred             HHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888765        4678899999988755443332   12222111111  12245554434444455556777999


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHhccccCCCCC--CccccccccccccHHHHH
Q 009033          373 MAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI--PKPVWRYPMSYLSFHYWA  427 (546)
Q Consensus       373 ~~i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i--P~~~W~~~~~yiS~~~Ya  427 (546)
                      .++++++.+...|..++.++...  ++.|+-. ..++  |+  |..|+.|+||..|-
T Consensus       155 ~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~--~~~~l~~~sp~~~~  206 (240)
T TIGR03518       155 LFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGG--SAYTISELGLSYHY  206 (240)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-Hhhhcchh--HHHHHHHcCHHHHH
Confidence            99999999988886655443222  2222211 2223  43  43448888886664

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.06  E-value=5.6e-06  Score=71.56  Aligned_cols=65  Identities=11%  Similarity=0.244  Sum_probs=54.5

Q ss_pred             CCCCCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhc
Q 009033          446 PDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQ  511 (546)
Q Consensus       446 ~~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~  511 (546)
                      +|..+++|+++|+..|++..++ +|+|++|+++++++|.++.++++.+....+.....++.+|+.+
T Consensus        26 ~G~~~V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~~l~f~r~~~   90 (103)
T PF06422_consen   26 PGSTYVSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGEVLVFKRGKA   90 (103)
T ss_pred             CCccEEeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEeCCcc
Confidence            4557889999999779997654 9999999999999999999999999888887766666666544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane

>PRK13695 putative NTPase; Provisional

Probab=98.02  E-value=1.1e-05  Score=76.11  Aligned_cols=80  Identities=15%  Similarity=0.231  Sum_probs=64.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033           33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      ..+||+|+.+..+.+..+.+|+++++||| ..++..+ ..+.+.+.++.+.|.++|+++|.  ..+....|++..+.+|+
T Consensus        77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~-~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~--~~~~~~~~~i~~~~~~~  152 (174)
T PRK13695         77 VNLEDLERIGIPALERALEEADVIIIDEI-GKMELKS-PKFVKAVEEVLDSEKPVIATLHR--RSVHPFVQEIKSRPGGR  152 (174)
T ss_pred             EehHHHHHHHHHHHHhccCCCCEEEEECC-Ccchhhh-HHHHHHHHHHHhCCCeEEEEECc--hhhHHHHHHHhccCCcE
Confidence            35899999999999999999999999995 2233333 44567777777778999999998  35678899999999999


Q ss_pred             EEEe
Q 009033          113 TVYF  116 (546)
Q Consensus       113 ~v~~  116 (546)
                      +...
T Consensus       153 i~~~  156 (174)
T PRK13695        153 VYEL  156 (174)
T ss_pred             EEEE
Confidence            8765

>TIGR01069 mutS2 MutS2 family protein

Probab=97.97  E-value=1.2e-05  Score=92.62  Aligned_cols=63  Identities=21%  Similarity=0.278  Sum_probs=56.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCC
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASIHQP   94 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v-~~~L~~l~~~g~tvi~~~H~p   94 (546)
                      ....+|+|+++++.|...+ .+|+++++|||++|+|+.....+ ...++.+.+.|.++|++||++
T Consensus       382 ~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~  445 (771)
T TIGR01069       382 NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYK  445 (771)
T ss_pred             hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence            3456899999999998776 89999999999999999999999 578888888899999999995

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.86  E-value=1.8e-05  Score=77.19  Aligned_cols=45  Identities=18%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 009033           38 GERRRVSIALEILMRPRLLFLDEPT-----SGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus        38 Ger~Rvsia~~l~~~P~il~LDEPt-----sgLD~~~~~~v~~~L~~l~~   82 (546)
                      -|++++.||++++.+|+++++||||     +|||+.++..+.+.++++++
T Consensus       156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            3999999999999999999999999     99999999999999999975

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=97.78  E-value=0.0067  Score=60.92  Aligned_cols=95  Identities=19%  Similarity=0.340  Sum_probs=56.9

Q ss_pred             HHHHHHhhCCC--------cchHHHHHHHHHHHHhHHHH--HHHHHh--h-hhhcc-ccccCCHHHHHHHHHHHHHHHH-
Q 009033          302 KVFQRERLNGH--------YGVTAFVIGNTLSAMPFLIM--ITFISG--T-ICYFM-VRLHPGFIHYLFFVLCLYASVA-  366 (546)
Q Consensus       302 ~vf~RE~~~g~--------Y~~~~y~la~~l~~lP~~~l--~~~if~--~-i~Y~m-~Gl~~~~~~f~~f~l~l~l~~~-  366 (546)
                      ..+.+|+++|.        ++...++++|.++.+...++  ...+.+  + ..++. .|.+.+...+....+....... 
T Consensus        88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (277)
T PF12679_consen   88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA  167 (277)
T ss_pred             HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence            45677777763        67889999999999887432  111111  1 11222 2444555554433332222222 


Q ss_pred             --HHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 009033          367 --VVESLMMAIASIVPNFLMGIITGAGIQGIF  396 (546)
Q Consensus       367 --~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~  396 (546)
                        +..++++++++++++...|...+.++....
T Consensus       168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~  199 (277)
T PF12679_consen  168 VLVFISLGLLISSLFRSSASAILASLGLLFLL  199 (277)
T ss_pred             HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence              457899999999998888877776655444

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=97.77  E-value=4.4e-05  Score=88.90  Aligned_cols=69  Identities=20%  Similarity=0.151  Sum_probs=61.3

Q ss_pred             HhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH---------hhcCeEEEEeCCeEEEecCh
Q 009033           50 LMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF---------ELFDRLYLLSGGKTVYFGET  119 (546)
Q Consensus        50 ~~~P~il~LDEPtsgL-D~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~---------~~~D~v~lL~~G~~v~~G~~  119 (546)
                      ..+|.++++|||+.+| |+..+..+.+.++++.+.|.+++++||+| +++.         +.||.+++|.+|++...|+.
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~-~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSI-SDAERSGIIDVLKESCPTKICLPNGAAREPGTR  728 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence            5799999999999999 79999999999999999999999999997 4554         68999999999998777644

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.71  E-value=8.6e-05  Score=75.29  Aligned_cols=68  Identities=31%  Similarity=0.354  Sum_probs=47.5

Q ss_pred             HHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-H-----------HhhcCeEEEEeCCe
Q 009033           45 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-V-----------FELFDRLYLLSGGK  112 (546)
Q Consensus        45 ia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~-i-----------~~~~D~v~lL~~G~  112 (546)
                      ....+..+|+++++|||++      ...+...++.+ +.|.|+|+|+|++..+ +           ...|||+++|++|+
T Consensus       187 ~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~  259 (270)
T TIGR02858       187 MMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK  259 (270)
T ss_pred             HHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence            3344457999999999974      23344444544 4699999999986332 2           26699999999887


Q ss_pred             EEEecChhH
Q 009033          113 TVYFGETSA  121 (546)
Q Consensus       113 ~v~~G~~~~  121 (546)
                        ..|.+++
T Consensus       260 --~~g~~~~  266 (270)
T TIGR02858       260 --GPGTVEA  266 (270)
T ss_pred             --CCCceee
Confidence              5666544

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.64  E-value=0.025  Score=57.20  Aligned_cols=199  Identities=15%  Similarity=0.131  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhhhhHHHHHHHHHHH-----Hhhhhhh
Q 009033          223 LMQAFTLTKRSFVNMSRDFG-YYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFM-----SIGGFPS  296 (546)
Q Consensus       223 ~~Q~~~L~~R~~~~~~Rd~~-~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~~~lf~~~~~~~f~-----~~~~~p~  296 (546)
                      +..++.|.+|.++.-.|+.. -...-++.-+++.++.+.+|-.+-...  ..+  -..+...+.....     ...+..+
T Consensus        17 ~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~--~~~--~~~~l~~G~~~w~f~~~~i~~~~~s   92 (263)
T COG1682          17 RRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP--GLN--FLAYLLAGLILWFFFSEAISEGAGS   92 (263)
T ss_pred             HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--Ccc--hHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            55688899999998766642 233345555566666666664432221  001  1122222221111     1122344


Q ss_pred             HHhhhHHHHHHhhCCCc-chHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009033          297 FVEDMKVFQRERLNGHY-GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAI  375 (546)
Q Consensus       297 ~~~er~vf~RE~~~g~Y-~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i  375 (546)
                      +.+...++++     .+ ++..+.+++++.++--.++..++....+-+.-+.. ++ +++.+...+.+..+.+.++++++
T Consensus        93 ~~~n~~li~k-----~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s~-~~l~~~~~l~~l~l~~~g~~l~~  165 (263)
T COG1682          93 VVANAALIKK-----INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-SW-HWLLLLPALLLLILFSVGLGLIL  165 (263)
T ss_pred             hhhhHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455443     44 88999999999998776666655555544444443 33 44444445555666677888888


Q ss_pred             HHhccch-HHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHh
Q 009033          376 ASIVPNF-LMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQND  435 (546)
Q Consensus       376 ~~~~p~~-~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~ne  435 (546)
                      |.++.-+ +.+.+++.+ ..+++..+|.+=+.+.+|.. |++ +.++||+.+-+|+.=..-
T Consensus       166 a~l~v~fRD~~~i~~~v-~~~~f~~sPIi~~~~~~p~~-~~~-~~~~NP~~~iie~~R~~~  223 (263)
T COG1682         166 ASLGVRFRDLGQILGVV-LQLLFFLSPIIYPVSNLPEQ-LRE-LVLLNPLTHIIESFRAPL  223 (263)
T ss_pred             HhHhhhcccHHHHHHHH-HHHHHHhCceeeehhhccHH-HHH-HHHHCcHHHHHHHHHHHH
Confidence            8876433 445555544 44556677888889999974 655 888999999998776543

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.61  E-value=0.00014  Score=72.36  Aligned_cols=85  Identities=25%  Similarity=0.354  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHH----------------HHHhCCCeEEEeCCCC--
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL----------------EILMRPRLLFLDEPTS--   63 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~----------------~l~~~P~il~LDEPts--   63 (546)
                      +.++.++|+..+.+.+++.+..+...       ..+|+.|++.+++                ....+|+++++| |++  
T Consensus        52 ~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~  123 (239)
T cd01125          52 PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF  123 (239)
T ss_pred             CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence            34567788888888888766555433       2245555555443                235799999999 765  


Q ss_pred             ----CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009033           64 ----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP   94 (546)
Q Consensus        64 ----gLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p   94 (546)
                          .+|+.....+++.|+++++ .|.||+++.|..
T Consensus       124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~  159 (239)
T cd01125         124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR  159 (239)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence                4799999999999999986 589999999986

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.50  E-value=0.00025  Score=69.74  Aligned_cols=57  Identities=19%  Similarity=0.211  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCEEEEEecCC
Q 009033           38 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRD-GRTVIASIHQP   94 (546)
Q Consensus        38 Ger~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~~l~~~-g~tvi~~~H~p   94 (546)
                      .|-++++-....+++|+++++|||.+|+|+.....+... ++.+.+. |.++|++||++
T Consensus        95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~  153 (218)
T cd03286          95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH  153 (218)
T ss_pred             HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence            567777777777889999999999999999999999888 7888875 89999999995

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.47  E-value=0.00029  Score=69.85  Aligned_cols=75  Identities=13%  Similarity=0.121  Sum_probs=53.9

Q ss_pred             CCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCCEEEEEecCCch------HHHh
Q 009033           35 ISGGERRRVSIALEIL----MRPRLLFLDEPTSGL----DSAAAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFE  100 (546)
Q Consensus        35 lSgGer~Rvsia~~l~----~~P~il~LDEPtsgL----D~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~------~i~~  100 (546)
                      +|+++.++..+.+.+-    .+|+++++||||+++    |+....++.+.++++++.|.|+++++|+...      .+..
T Consensus        96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~  175 (230)
T PRK08533         96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRT  175 (230)
T ss_pred             ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEE
Confidence            6777655544433332    369999999999999    8888889999999998888888887665321      1244


Q ss_pred             hcCeEEEEe
Q 009033          101 LFDRLYLLS  109 (546)
Q Consensus       101 ~~D~v~lL~  109 (546)
                      ++|-|+.|+
T Consensus       176 ~~DgvI~L~  184 (230)
T PRK08533        176 AATMLIRLE  184 (230)
T ss_pred             eeeEEEEEE
Confidence            567777776

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.46  E-value=5e-05  Score=76.10  Aligned_cols=77  Identities=18%  Similarity=0.199  Sum_probs=64.4

Q ss_pred             ccCCCCHHH--------HHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCCchHHHhh
Q 009033           31 HLRGISGGE--------RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF-VTQTLRCLSRDGRTVIASIHQPSSEVFEL  101 (546)
Q Consensus        31 ~~~~lSgGe--------r~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~-v~~~L~~l~~~g~tvi~~~H~p~~~i~~~  101 (546)
                      ..+.+||||        +||+++|+.+..+++|.+|  ||+.+|+.+... ++  +..+...+.|.|+.+|+.  .....
T Consensus       126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~l--a~~~~  199 (249)
T cd01128         126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRL--AERRI  199 (249)
T ss_pred             CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHH--hhCCC
Confidence            345689999        9999999999899999999  999999755554 55  566665678999999995  34688


Q ss_pred             cCeEEEEeCCeE
Q 009033          102 FDRLYLLSGGKT  113 (546)
Q Consensus       102 ~D~v~lL~~G~~  113 (546)
                      +|.|.+|..|..
T Consensus       200 ~paI~vl~s~sr  211 (249)
T cd01128         200 FPAIDILKSGTR  211 (249)
T ss_pred             CCeEEEcCCCCc
Confidence            999999999986

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.37  E-value=0.00081  Score=66.55  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHHHHHh--CCCeEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCCch------HHHhhcC
Q 009033           35 ISGGERRRVSIALEILM--RPRLLFLDEPTSG---LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFD  103 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~--~P~il~LDEPtsg---LD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~------~i~~~~D  103 (546)
                      .+.++++.+.....++.  +|+++++||||+.   .|.....++++.++.+++.|.|+++++|++..      .+..++|
T Consensus       101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D  180 (234)
T PRK06067        101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD  180 (234)
T ss_pred             CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence            46788999999999987  9999999999964   55555566666677777789999999998642      1566778


Q ss_pred             eEEEEeC
Q 009033          104 RLYLLSG  110 (546)
Q Consensus       104 ~v~lL~~  110 (546)
                      -++.|+.
T Consensus       181 gvI~L~~  187 (234)
T PRK06067        181 VYLKLRA  187 (234)
T ss_pred             EEEEEEe
Confidence            8877764

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.32  E-value=0.00058  Score=67.33  Aligned_cols=63  Identities=24%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCCchHHHhhc
Q 009033           38 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRD-GRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        38 Ger~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v-~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~  102 (546)
                      .|-+|++-...-+++|+++++|||.+|.|+.....+ ...++.+.+. +.++|++||++  ++.++.
T Consensus        96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~  160 (222)
T cd03287          96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL  160 (222)
T ss_pred             HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence            477888877777889999999999999998887775 5677788775 89999999996  444444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.21  E-value=0.001  Score=60.62  Aligned_cols=63  Identities=22%  Similarity=0.199  Sum_probs=47.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009033           35 ISGGERRRVSIALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE   97 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~il~LDEPts----------gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~   97 (546)
                      -+.++.++...+.+...+|+++++||++.          +.|......+.+++....+.|.|+|+++|.+..+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence            45666667778888888999999999994          4555556666666656655799999999997543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=97.07  E-value=0.001  Score=78.09  Aligned_cols=69  Identities=19%  Similarity=0.209  Sum_probs=54.8

Q ss_pred             HHHHHHhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh--hcCeEEEEeCCeEE
Q 009033           45 IALEILMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE--LFDRLYLLSGGKTV  114 (546)
Q Consensus        45 ia~~l~~~P~il~LDEPtsgL-D~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~--~~D~v~lL~~G~~v  114 (546)
                      |++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+| .++.+  .++.++-....++.
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~-~d~~~s~i~~~ilen~~t~I~  751 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSL-SDAANSGILDVIVESTATKIF  751 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHhhCchHHHHHHcCCccee
Confidence            567788999999999999999 79999999999999999999999999997 55654  23333333444443

>PF13175 AAA_15: AAA ATPase domain

Probab=97.03  E-value=0.0015  Score=69.63  Aligned_cols=64  Identities=28%  Similarity=0.376  Sum_probs=54.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHH------hC-CC---eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009033           31 HLRGISGGERRRVSIALEIL------MR-PR---LLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP   94 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~------~~-P~---il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p   94 (546)
                      .....|.|+++.+.++..+.      .+ +.   |+++|||=+.|.|..+..+++.|+++++ .+..||+|||.|
T Consensus       338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp  412 (415)
T PF13175_consen  338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSP  412 (415)
T ss_pred             ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCCh
Confidence            45678999999988877653      12 22   9999999999999999999999999997 678999999987

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=96.99  E-value=0.00017  Score=73.62  Aligned_cols=157  Identities=19%  Similarity=0.280  Sum_probs=0.0

Q ss_pred             HHhhhH--HHHHHhhCCCcchHHHHHHHHHHHHhHHHHHHHHHhhhhhcccc---ccCCHHHHHHHHHHHHHHHHHHHHH
Q 009033          297 FVEDMK--VFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVR---LHPGFIHYLFFVLCLYASVAVVESL  371 (546)
Q Consensus       297 ~~~er~--vf~RE~~~g~Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~G---l~~~~~~f~~f~l~l~l~~~~~~sl  371 (546)
                      ..+||.  +..|-+..|. +...|++++.+..+...++..++...+   +.|   +..+  .+...++.+++..++..++
T Consensus       182 i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~  255 (344)
T PF12698_consen  182 IVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISF  255 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHH
Confidence            345554  4555556664 889999999999999988888777664   334   4333  4444445566667778889


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCc
Q 009033          372 MMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKI  451 (546)
Q Consensus       372 ~~~i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~  451 (546)
                      +.+++.++++...+..++..+..+++.++|.+.+.+++|+ ++.+ +.++.|..|..+++..--                
T Consensus       256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-i~~~~P~~~~~~~~~~~~----------------  317 (344)
T PF12698_consen  256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS-FLQW-ISSFLPFYWFIQGLRNII----------------  317 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH-HHHH-HHHHhhHHHHHHHHHHHH----------------
Confidence            9999999999988887777776655555666666777776 3444 666778888876654321                


Q ss_pred             CHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHH
Q 009033          452 PGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFF  488 (546)
Q Consensus       452 ~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~  488 (546)
                               +|.  ..+.|.++++++++.+++.+++.
T Consensus       318 ---------~~~--~~~~~~~~~~l~~~~~v~~~l~~  343 (344)
T PF12698_consen  318 ---------YGD--WSEIWISLIILLLFAVVYLLLAI  343 (344)
T ss_dssp             -------------------------------------
T ss_pred             ---------Hhc--HHHHHHHHHHHHHHHHHHHHHHh
Confidence                     110  11256677788777777766553

>COG3910 Predicted ATPase [General function prediction only]

Probab=96.88  E-value=0.0018  Score=61.40  Aligned_cols=67  Identities=27%  Similarity=0.390  Sum_probs=54.2

Q ss_pred             ccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009033           27 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP   94 (546)
Q Consensus        27 ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p   94 (546)
                      .|+.....-|.||-=- .|-..-.++.-|.+||||-++|.+.-+..++..|+++++.|.-+|+.||-|
T Consensus       122 ~~~~sLh~~SHGEsf~-~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSP  188 (233)
T COG3910         122 YGGRSLHHMSHGESFL-AIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSP  188 (233)
T ss_pred             cCCcchhhhccchHHH-HHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecCh
Confidence            3443445579999533 232333567889999999999999999999999999999999999999988

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=96.85  E-value=0.35  Score=48.69  Aligned_cols=247  Identities=15%  Similarity=0.217  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-cCCCC---hh-hHHhhhhhHHHHHHHHHHHHhhhhhhHHh
Q 009033          225 QAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYL-NVGTG---YN-SILARGSCASFVFGFVTFMSIGGFPSFVE  299 (546)
Q Consensus       225 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~-~l~~~---~~-~i~~r~~~lf~~~~~~~f~~~~~~p~~~~  299 (546)
                      ++..+.++.+....|+|..+..-....+..++.....+. .....   .. .-+.. ....+......+..   +-...-
T Consensus         3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~l   78 (278)
T COG1277           3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLL-FLSSVSLVFSFFLP---LLAILL   78 (278)
T ss_pred             hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhh-hhhhHHHHHHHHHH---HHHHHH
Confidence            577888999999999998877776666666666666662 11111   10 11111 11111111111111   111112


Q ss_pred             hhHHHHHHhhCCC--------cchHHHHHHHHHHHHhHHHHHHHHHh---hhhhcccccc---CCHHHHHHHHHHHHHHH
Q 009033          300 DMKVFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISG---TICYFMVRLH---PGFIHYLFFVLCLYASV  365 (546)
Q Consensus       300 er~vf~RE~~~g~--------Y~~~~y~la~~l~~lP~~~l~~~if~---~i~Y~m~Gl~---~~~~~f~~f~l~l~l~~  365 (546)
                      --.++.+|+.+|.        .+..--+++|.++-+-..++..++..   ...+...|..   .+..++..+.....+..
T Consensus        79 ~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  158 (278)
T COG1277          79 GADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYG  158 (278)
T ss_pred             ccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence            3356777777775        45566778888888766555554444   1233333433   33445566666666677


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccC------CCCCCccccccccccccHHHHHHHHHHHHhhCCC
Q 009033          366 AVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRL------PNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGL  439 (546)
Q Consensus       366 ~~~~sl~~~i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~------~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~  439 (546)
                      .+..+++.+++...++...+..++..+...+.+..+....      ...-|   +.-.+.+.+|.++.-+......... 
T Consensus       159 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~-  234 (278)
T COG1277         159 LVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP---TLNTLSLLLPLYLLAELAFTILLQS-  234 (278)
T ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHHhccCHHHHHHHHhhhhcccc-
Confidence            7777888999999998877777766655444433332211      11111   1011445566666655444322110 


Q ss_pred             cccCCCCCCCCcCHHHHHhhhcCc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009033          440 WFDNQSPDLPKIPGEYVLENVFQI-DVRRSKWIDLSVIFSMIISYRIIFFVMIKIS  494 (546)
Q Consensus       440 ~f~~~~~~~~~~~G~~vL~~~~~~-~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~  494 (546)
                      .+..        .       .++. +.....|.+..+++++.+++..++++..+.+
T Consensus       235 ~~~~--------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~  275 (278)
T COG1277         235 GFSD--------S-------ILTLNESLLLAWFNILILIIYILIFLSIAYLIFKRR  275 (278)
T ss_pred             cccc--------c-------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            0000        0       0111 1123479999999999999999888665543

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=96.85  E-value=0.44  Score=48.27  Aligned_cols=100  Identities=11%  Similarity=0.054  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCc
Q 009033          364 SVAVVESLMMAIASIV---PNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLW  440 (546)
Q Consensus       364 ~~~~~~sl~~~i~~~~---p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~  440 (546)
                      ....+.++|+++|++.   |+..-  ++. .+..+++..+|.+=+.+.+|+. |++ +.+.||+.+.+|+.=..-+.|. 
T Consensus       158 ~~l~~~glglils~l~v~~rDi~~--i~~-~~l~~lf~~SpI~y~~~~vp~~-~~~-il~~NPl~~~ie~~R~~~~~~~-  231 (264)
T PRK15176        158 AWLLGLSFGYFCDALSERFPLVYK--AVP-VMLRPMFLISAVFYTANELPYS-LLS-IFSWNPLLHANEIVREGMFEGY-  231 (264)
T ss_pred             HHHHHHHHHHHHHHHHHhCccHHH--HHH-HHHHHHHHHhhHhhhHHhCcHH-HHH-HHHHCcHHHHHHHHHHHHhcCc-
Confidence            4444557777766654   55443  333 3445566667777677889873 443 5678999999987765444221 


Q ss_pred             ccCCCCCCCCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009033          441 FDNQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISE  495 (546)
Q Consensus       441 f~~~~~~~~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~  495 (546)
                                             .   ..|.+..+++++.++..+++++..|+.+
T Consensus       232 -----------------------~---~~~~~~~~~~~~~~~~l~~G~~~~~~~~  260 (264)
T PRK15176        232 -----------------------H---SLYLEPFYPLAFSATLFLAGLIFHLICD  260 (264)
T ss_pred             -----------------------C---ccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   0   1122345566666666666766666544

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=96.72  E-value=0.12  Score=50.80  Aligned_cols=153  Identities=13%  Similarity=0.169  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHhhh-hhHHHHHHHHHHHHhhhhhhHHhhhHHH
Q 009033          226 AFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARG-SCASFVFGFVTFMSIGGFPSFVEDMKVF  304 (546)
Q Consensus       226 ~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~~r~-~~lf~~~~~~~f~~~~~~p~~~~er~vf  304 (546)
                      ++.+.||.++.-+|++.....-+...+.+..+..   +-++.+.+....-. |++..+..|....+.         -+.|
T Consensus         1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~---~al~~~~~~l~~~~~gllWi~~lfa~~l~~---------~r~f   68 (215)
T PF03379_consen    1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFS---FALGPDPDLLARVAPGLLWIALLFASLLGL---------NRSF   68 (215)
T ss_pred             CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH---hhcCCchhHHHHHhHHHHHHHHHHHHHHHh---------hHhH
Confidence            4678999999999998765544444333333332   34554443333222 333333322222221         1568


Q ss_pred             HHHhhCCCc--------chHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009033          305 QRERLNGHY--------GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA  376 (546)
Q Consensus       305 ~RE~~~g~Y--------~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~  376 (546)
                      .+|..+|..        ++.+.+++|.++..-+..+..++..-+...+-|++.  .....+.+++.+........|-+.+
T Consensus        69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~a  146 (215)
T PF03379_consen   69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLLA  146 (215)
T ss_pred             HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            888888762        356799999999987776666555555555556554  3444445555555455555666666


Q ss_pred             HhccchHHHHHHHHHH
Q 009033          377 SIVPNFLMGIITGAGI  392 (546)
Q Consensus       377 ~~~p~~~~a~~~~~~~  392 (546)
                      +++-+......+.+.+
T Consensus       147 al~~~~r~~~~Ll~lL  162 (215)
T PF03379_consen  147 ALAAGARGREILLPLL  162 (215)
T ss_pred             HHHHhccccCHHHHHH
Confidence            6554333333333333

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.44  E-value=0.011  Score=64.91  Aligned_cols=75  Identities=31%  Similarity=0.497  Sum_probs=64.1

Q ss_pred             CCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009033           33 RGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL  108 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL  108 (546)
                      +--||||-=|+.+|...+.    +.+.|++||--+|+--..+..|-+.|++|++. .-|+|+||.|  .|..++|.=+.+
T Consensus       430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~-~QVl~VTHlP--QVAa~ad~H~~V  506 (557)
T COG0497         430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEH-HQVLCVTHLP--QVAAMADTHFLV  506 (557)
T ss_pred             hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcC-ceEEEEecHH--HHHhhhcceEEE
Confidence            4569999999999876653    24589999999999999999999999999874 5799999997  688888887777


Q ss_pred             eC
Q 009033          109 SG  110 (546)
Q Consensus       109 ~~  110 (546)
                      ++
T Consensus       507 ~K  508 (557)
T COG0497         507 EK  508 (557)
T ss_pred             EE
Confidence            64

>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.33  E-value=0.0062  Score=47.86  Aligned_cols=46  Identities=17%  Similarity=0.324  Sum_probs=40.1

Q ss_pred             CCcCHHHHHhhhcCcc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009033          449 PKIPGEYVLENVFQID-VRRSKWIDLSVIFSMIISYRIIFFVMIKISE  495 (546)
Q Consensus       449 ~~~~G~~vL~~~~~~~-~~~~~w~~~~iL~~~~~~f~~l~~~~l~~~~  495 (546)
                      ...-|+++|+. .|+. ++++.|..+++|+|+.++|.+++.++|.|..
T Consensus         9 ~~tlG~~vL~~-rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~   55 (65)
T PF08370_consen    9 NSTLGVAVLKS-RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLN   55 (65)
T ss_pred             CCcHHHHHHHH-cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35789999998 8884 3578999999999999999999999999843

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].

>COG4637 Predicted ATPase [General function prediction only]

Probab=96.27  E-value=0.015  Score=59.42  Aligned_cols=67  Identities=30%  Similarity=0.487  Sum_probs=58.6

Q ss_pred             CCCCHHHHHHHHHHHHHHh--CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033           33 RGISGGERRRVSIALEILM--RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~--~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~  102 (546)
                      +.||-|+.|-+.++.+|+.  .|.+++||||-++|-|..-..+...+++-++++ -|+++||-|  +..+.+
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~--rLl~~~  337 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSP--RLLNAV  337 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCH--HHHhhc
Confidence            4899999999999999986  689999999999999999999999999999876 799999975  444443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.21  E-value=0.0028  Score=71.98  Aligned_cols=74  Identities=26%  Similarity=0.479  Sum_probs=63.6

Q ss_pred             cCCCCHHHHHHHHHHHHHHh---CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009033           32 LRGISGGERRRVSIALEILM---RP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL  107 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~---~P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l  107 (546)
                      ...||||||--|++|.-++.   +| +..++||.-++||+..+..|-.++++|+.. .-.|+||-.|  ++.+.+|+.+=
T Consensus      1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRp--Ell~vAdKfyg 1171 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRP--ELLSVADKFYG 1171 (1200)
T ss_pred             HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccH--HHHHHHHhhhc
Confidence            45799999999999888763   56 799999999999999999999999999976 5688999886  78888887653


Q ss_pred             E
Q 009033          108 L  108 (546)
Q Consensus       108 L  108 (546)
                      .
T Consensus      1172 V 1172 (1200)
T KOG0964|consen 1172 V 1172 (1200)
T ss_pred             e
Confidence            3

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.16  E-value=0.0095  Score=68.04  Aligned_cols=58  Identities=26%  Similarity=0.260  Sum_probs=43.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHh------CCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Q 009033           32 LRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQ   93 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~------~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~   93 (546)
                      +..|||||||-+++|-.++-      +.++ ++|||++.||+..+..+++ .+..++   .-||+.+|+
T Consensus       549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~---~QvIils~d  613 (650)
T TIGR03185       549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKAS---HQVLLLSTD  613 (650)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccC---CeEEEEech
Confidence            45799999999877655432      3455 5699999999999999985 666553   456777777

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.15  E-value=0.0075  Score=73.30  Aligned_cols=74  Identities=31%  Similarity=0.414  Sum_probs=62.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHh---CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009033           32 LRGISGGERRRVSIALEILM---RP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL  107 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~---~P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l  107 (546)
                      +..||||||=-++||.-++.   +| ++.+|||-=++||..+...+.++|++.+ .+.=.|++||++  ..+..+|+++-
T Consensus      1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~--~~m~~ad~l~G 1140 (1163)
T COG1196        1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRK--GTMEAADRLVG 1140 (1163)
T ss_pred             hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcCh--HHHHHHHHHee
Confidence            45699999999999887753   45 8999999999999999999999999999 556789999985  56788888764


Q ss_pred             E
Q 009033          108 L  108 (546)
Q Consensus       108 L  108 (546)
                      .
T Consensus      1141 V 1141 (1163)
T COG1196        1141 V 1141 (1163)
T ss_pred             e
Confidence            4

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.00  E-value=0.00099  Score=73.31  Aligned_cols=67  Identities=18%  Similarity=0.137  Sum_probs=51.3

Q ss_pred             CCCCHHHHHHHHHH--HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH-------H-Hhhc
Q 009033           33 RGISGGERRRVSIA--LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-------V-FELF  102 (546)
Q Consensus        33 ~~lSgGer~Rvsia--~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~-------i-~~~~  102 (546)
                      +.+|+|++|||.|+  .++..+|+..          ...+.++.+.++.+++.|+|+|+++|++...       + ..++
T Consensus       114 ~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~la  183 (484)
T TIGR02655       114 YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVS  183 (484)
T ss_pred             HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEee
Confidence            45788888888888  5555555433          4677888999999998999999999986320       2 5678


Q ss_pred             CeEEEEe
Q 009033          103 DRLYLLS  109 (546)
Q Consensus       103 D~v~lL~  109 (546)
                      |.|+.|+
T Consensus       184 DgVI~L~  190 (484)
T TIGR02655       184 DNVVILR  190 (484)
T ss_pred             eeEEEEE
Confidence            9999997

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=95.93  E-value=0.014  Score=68.24  Aligned_cols=46  Identities=30%  Similarity=0.281  Sum_probs=42.1

Q ss_pred             HhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 009033           50 LMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS   95 (546)
Q Consensus        50 ~~~P~il~LDEPtsgLD-~~~~~~v~~~L~~l~~~g~tvi~~~H~p~   95 (546)
                      -.+|+++++|||+.+|| +..+..+.+.++.+.+.|.++++++|.|.
T Consensus       633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~  679 (811)
T PRK13873        633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA  679 (811)
T ss_pred             cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            45899999999999999 78899999999999999999999999973

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=95.80  E-value=0.026  Score=61.23  Aligned_cols=85  Identities=20%  Similarity=0.185  Sum_probs=66.1

Q ss_pred             CCCHHHHHHHH-----HHHHHHh-CCC-eEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHh--CCC
Q 009033           34 GISGGERRRVS-----IALEILM-RPR-LLFLD-----------------EP--TSGLDSAAAFFVTQTLRCLSR--DGR   85 (546)
Q Consensus        34 ~lSgGer~Rvs-----ia~~l~~-~P~-il~LD-----------------EP--tsgLD~~~~~~v~~~L~~l~~--~g~   85 (546)
                      .=|-++|-|..     ||.=+.- +-+ +|++|                 ||  |+|+|+.....+.+.++++.+  +|.
T Consensus       223 ~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~Gs  302 (438)
T PRK07721        223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGS  302 (438)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCC
Confidence            34778887743     3333322 334 56788                 75  669999999999999999984  675


Q ss_pred             -----EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033           86 -----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        86 -----tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~  121 (546)
                           ||++.+|+.. +  ..+|++..+.+|+++.+++..+
T Consensus       303 IT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        303 ITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             eeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHHH
Confidence                 9999999964 3  7899999999999999998764

>PF13166 AAA_13: AAA domain

Probab=95.73  E-value=0.033  Score=64.26  Aligned_cols=64  Identities=27%  Similarity=0.373  Sum_probs=55.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHH--h-------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCC
Q 009033           31 HLRGISGGERRRVSIALEIL--M-------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLS--RDGRTVIASIHQP   94 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~--~-------~P~il~LDEPtsgLD~~~~~~v~~~L~~l~--~~g~tvi~~~H~p   94 (546)
                      ....||-|||+-+++|-=|.  .       +..++++|.|-|.||......+.+.|+++.  ...+-||+-||+.
T Consensus       497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~  571 (712)
T PF13166_consen  497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNL  571 (712)
T ss_pred             ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcH
Confidence            35789999999999986552  3       568999999999999999999999999997  4567899999984

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=95.68  E-value=0.011  Score=61.28  Aligned_cols=71  Identities=21%  Similarity=0.210  Sum_probs=56.0

Q ss_pred             HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           44 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        44 sia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      .+..+|-.+|+++++|||.+       .++++.++.+...+.+++.|+|..+  .....||+..|..|++...|.+.+..
T Consensus       210 ~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       210 LLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             HHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence            45667889999999999996       3456677777644456799999964  56679999999999988888877654

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=95.47  E-value=0.041  Score=64.70  Aligned_cols=80  Identities=25%  Similarity=0.174  Sum_probs=56.9

Q ss_pred             cccccccc--CcccCCCCHHHHHHHHHHHHHH--hCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEec
Q 009033           21 DCADTVIG--NWHLRGISGGERRRVSIALEIL--MRPRLLFLDEP---TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIH   92 (546)
Q Consensus        21 ~~~~~~ig--~~~~~~lSgGer~Rvsia~~l~--~~P~il~LDEP---tsgLD~~~~~~v~~~L~~l~~~-g~tvi~~~H   92 (546)
                      +.--|++|  +...+|.|-=+.....++..|-  ++++++++|||   |+.+|..+  .....++.+.+. |.+++++||
T Consensus       651 d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH  728 (854)
T PRK05399        651 DRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATH  728 (854)
T ss_pred             CeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEec
Confidence            33445566  2345677776666666666654  59999999999   88888444  345567777765 589999999


Q ss_pred             CCchHHHhhcCe
Q 009033           93 QPSSEVFELFDR  104 (546)
Q Consensus        93 ~p~~~i~~~~D~  104 (546)
                      .  .++.+++++
T Consensus       729 ~--~el~~l~~~  738 (854)
T PRK05399        729 Y--HELTELEEK  738 (854)
T ss_pred             h--HHHHHHhhh
Confidence            8  477888775

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.17  E-value=0.027  Score=66.80  Aligned_cols=59  Identities=25%  Similarity=0.311  Sum_probs=50.2

Q ss_pred             CCHHHH------HHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecC
Q 009033           35 ISGGER------RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIHQ   93 (546)
Q Consensus        35 lSgGer------~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-----~g~tvi~~~H~   93 (546)
                      -|.|||      =|+++|..+..+..+|-|||||++||-.+..-+...|.++-+     .+.-.|++||+
T Consensus      1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHD 1253 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 (1294)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehH
Confidence            388998      477889999999999999999999999999888888777643     25678889998

>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.98  E-value=3.6  Score=40.89  Aligned_cols=243  Identities=13%  Similarity=0.100  Sum_probs=108.9

Q ss_pred             CHHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHhccCCCChhhHH---hhhhhHHHHHHHHHHHHhhhhhh
Q 009033          221 SFLMQAFTLTKRSFVNMSRDFG-YYWLRLVIYVVVTICIGTIYLNVGTGYNSIL---ARGSCASFVFGFVTFMSIGGFPS  296 (546)
Q Consensus       221 s~~~Q~~~L~~R~~~~~~Rd~~-~~~~r~~~~i~~~l~iG~lf~~l~~~~~~i~---~r~~~lf~~~~~~~f~~~~~~p~  296 (546)
                      .+++....+.+=.+..+.--+. ..+.|+ ...+-+++.+.++-.+-++.+.|+   ..-...++..++..-......-.
T Consensus         3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l-~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~~~~   81 (268)
T COG4587           3 KFWRKYRVLLSVGLASMLEYRVNFILWRL-SGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTVWSI   81 (268)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555566666655554422222 122222 222333444445544433333222   11122333333333222222223


Q ss_pred             HHhhhHHHHHHhhCCCcchHHHHHHHHHHHH--------hHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHH
Q 009033          297 FVEDMKVFQRERLNGHYGVTAFVIGNTLSAM--------PFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVV  368 (546)
Q Consensus       297 ~~~er~vf~RE~~~g~Y~~~~y~la~~l~~l--------P~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~  368 (546)
                      +--|+.|-.-|-.-..-++..|...+..+++        |+.++..++|... |.-+-.-.+....+.|.+.+.+....-
T Consensus        82 ~ef~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l-~~~~~~~l~~~~l~~~~l~la~~~~~~  160 (268)
T COG4587          82 WEFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALL-YGAILQFLSPWTLYLFVLALALLFLLR  160 (268)
T ss_pred             HHHHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hhHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence            3334444444444445556666666555554        4444444443332 221112334444444433332222222


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCC
Q 009033          369 ESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL  448 (546)
Q Consensus       369 ~sl~~~i~~~~p~~~~a~~~~~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~  448 (546)
                      -.+-..+++.+--..-|+.++....++..+.||.+.|..-.|+  |..-+--..|+-|.+                    
T Consensus       161 F~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~--~v~~il~ftPFpy~~--------------------  218 (268)
T COG4587         161 FLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPD--WVRAILAFTPFPYLL--------------------  218 (268)
T ss_pred             HHHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChH--HHHHHHHhCCchhhh--------------------
Confidence            2222233333333344666777777778889999999988887  421000011111211                    


Q ss_pred             CCcCHHHHHhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009033          449 PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIK  492 (546)
Q Consensus       449 ~~~~G~~vL~~~~~~~~~~~~w~~~~iL~~~~~~f~~l~~~~l~  492 (546)
                        -+....+-..+.   ....|.++++.+++..++-++.-...|
T Consensus       219 --y~P~~llvGk~s---~~~il~al~v~~~Wl~im~~l~~~lWr  257 (268)
T COG4587         219 --YTPVMLLVGKYS---GAQILKALLVQIGWLLIMWLLSRWLWR  257 (268)
T ss_pred             --ccHHHHHhcccc---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              112223221122   234788888888888888777654443

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=94.89  E-value=0.059  Score=58.64  Aligned_cols=71  Identities=14%  Similarity=0.204  Sum_probs=54.2

Q ss_pred             hCCCeEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE-EEeCCeEEEecChhH
Q 009033           51 MRPRLLFLDEPTSGLDSA-AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY-LLSGGKTVYFGETSA  121 (546)
Q Consensus        51 ~~P~il~LDEPtsgLD~~-~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~-lL~~G~~v~~G~~~~  121 (546)
                      .+|++|++|||...+|.. ...++.+++..+.+.|+.+|++++++..++..+.|++. -+..|.++...+++.
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~  265 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE  265 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence            379999999999988765 45678889999888788888877444467766667665 457788888887764

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=94.67  E-value=0.059  Score=63.13  Aligned_cols=50  Identities=20%  Similarity=0.190  Sum_probs=44.3

Q ss_pred             HHhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009033           49 ILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF   99 (546)
Q Consensus        49 l~~~P~il~LDEPtsgLD-~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~   99 (546)
                      +..+|.++++|||..+|| +..+..+.+.++++.+.|..++++||.| +++.
T Consensus       639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~-~d~~  689 (800)
T PRK13898        639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSV-EDAS  689 (800)
T ss_pred             hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHH
Confidence            456899999999999999 8889999999999999999999999997 4443

>TIGR00152 dephospho-CoA kinase

Probab=94.40  E-value=0.023  Score=54.26  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCch-HHHhhcCeEEEEeCC
Q 009033           37 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS-EVFELFDRLYLLSGG  111 (546)
Q Consensus        37 gGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~-~i~~~~D~v~lL~~G  111 (546)
                      -|+-.|..+|..+..+|+.+..+|  +.+||....++.+.+++..++|.+|++.+|.... .+...||.++++..+
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            478899999999999999988777  8999999999999999887667899999998522 367789999877554

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=94.30  E-value=4.8  Score=37.89  Aligned_cols=88  Identities=19%  Similarity=0.348  Sum_probs=49.7

Q ss_pred             HHHHHHhhCCC--------cchHHHHHHHHHHHHhHHHHHHHHHhhhhh---ccccc-cCCH---HHHH-HHHHHHHHHH
Q 009033          302 KVFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICY---FMVRL-HPGF---IHYL-FFVLCLYASV  365 (546)
Q Consensus       302 ~vf~RE~~~g~--------Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y---~m~Gl-~~~~---~~f~-~f~l~l~l~~  365 (546)
                      ..+.+|+.+|.        .+...++.+|.++-.-..++..++...+.+   .+.+. ..+.   ..++ .+.+...+..
T Consensus        68 ~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
T PF12730_consen   68 LLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLS  147 (232)
T ss_pred             HHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHH
Confidence            35667777776        367889999999998777666655433322   33332 1222   2222 2223333333


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHH
Q 009033          366 AVVESLMMAIASIVPNFLMGIITGA  390 (546)
Q Consensus       366 ~~~~sl~~~i~~~~p~~~~a~~~~~  390 (546)
                      .....+ .+++..++|...+..++-
T Consensus       148 ~~~~~~-~~i~~~~~~~~~~i~~~~  171 (232)
T PF12730_consen  148 LFISLL-LFISSLFRNSIVAIIISI  171 (232)
T ss_pred             HHHHHH-HHHHHHHhhHHHHHHHHH
Confidence            334444 777888888766654443

>cd01131 PilT Pilus retraction ATPase PilT

Probab=93.91  E-value=0.067  Score=51.63  Aligned_cols=57  Identities=16%  Similarity=0.277  Sum_probs=42.8

Q ss_pred             HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           44 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        44 sia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      .++++|..+|+++++|||.   |..+.    +...+.+..|..++.|+|.++  +.+..||++.+.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~----~~~l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~  122 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETI----RLALTAAETGHLVMSTLHTNS--AAKTIDRIIDVF  122 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHH----HHHHHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence            5778888999999999996   55543    333345667899999999974  346789887664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=93.88  E-value=0.049  Score=58.77  Aligned_cols=80  Identities=16%  Similarity=0.033  Sum_probs=60.0

Q ss_pred             cCCCCHHHHHHHHHHHHHH-------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 009033           32 LRGISGGERRRVSIALEIL-------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR  104 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~-------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~  104 (546)
                      ..+-|.|+|+|+..+...+       .++-++++|+||.+.|+.  .++-..+.+....|.+..+.+|.  +.+++-+  
T Consensus       219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L~ERa--  292 (432)
T PRK06793        219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM--KKLLERS--  292 (432)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhHHHHh--
Confidence            4567999999999988877       789999999999999996  55555666666568888888884  3444444  


Q ss_pred             EEEEeCCeEEEecC
Q 009033          105 LYLLSGGKTVYFGE  118 (546)
Q Consensus       105 v~lL~~G~~v~~G~  118 (546)
                       -...+|.+-..+.
T Consensus       293 -g~~~~GSiT~~~t  305 (432)
T PRK06793        293 -GKTQKGSITGIYT  305 (432)
T ss_pred             -ccCCCcceEEEEE
Confidence             4457887765554

>TIGR01190 ccmB heme exporter protein CcmB

Probab=93.71  E-value=4.6  Score=39.50  Aligned_cols=136  Identities=13%  Similarity=0.108  Sum_probs=75.2

Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-ccCCCChhhHHhhhhhHHH-HHHHHHHHHhhhhhhHHhhhHHHHHH
Q 009033          230 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIY-LNVGTGYNSILARGSCASF-VFGFVTFMSIGGFPSFVEDMKVFQRE  307 (546)
Q Consensus       230 ~~R~~~~~~Rd~~~~~~r~~~~i~~~l~iG~lf-~~l~~~~~~i~~r~~~lf~-~~~~~~f~~~~~~p~~~~er~vf~RE  307 (546)
                      .+|.++.-+|++.-...=+    +..+++-++| +.++.|.+..+.-...++. +..|....+.         -+.|.+|
T Consensus         2 ~~kDl~l~~r~~~~~~~~l----lF~l~vi~lf~la~gp~~~~l~~~apgilWva~lfa~ll~l---------~rlF~~d   68 (211)
T TIGR01190         2 IRRDLRLAFRAGGGILNPL----WFFLIVVTLFPFGVGPELKLLSRIAPGIVWVGALLSSLLSL---------DRLFRDD   68 (211)
T ss_pred             cHHHHHHHHcccchHHHHH----HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHh---------hHHHHHH
Confidence            5788888889876544333    3333333333 5566655444444333333 3333333222         2678888


Q ss_pred             hhCCC--------cchHHHHHHHHHHHHhHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009033          308 RLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIV  379 (546)
Q Consensus       308 ~~~g~--------Y~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl~~~~~~f~~f~l~l~l~~~~~~sl~~~i~~~~  379 (546)
                      +.||.        .+....+++|.++..-+..+.-++..-+.-.+-|++..  ....+.+.+.+-......+|-+.++++
T Consensus        69 ~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~~--~~~~l~l~LllGt~~Ls~igtl~aALt  146 (211)
T TIGR01190        69 FEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDVP--AWGALALTLLLGTPALSFLGAIGAALT  146 (211)
T ss_pred             HhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88884        35678899999988655544444443333334455433  334455555555555555666666665


Q ss_pred             c
Q 009033          380 P  380 (546)
Q Consensus       380 p  380 (546)
                      -
T Consensus       147 ~  147 (211)
T TIGR01190       147 V  147 (211)
T ss_pred             H
Confidence            3

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=93.29  E-value=0.2  Score=52.77  Aligned_cols=75  Identities=20%  Similarity=0.312  Sum_probs=55.8

Q ss_pred             CCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC-
Q 009033           34 GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD-  103 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D-  103 (546)
                      -.|-||+|-+.+|.-|+         .+++||+|||-+|-||..-+..+++. ...  ...+.|-+|+.  +.+.+..+ 
T Consensus       275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~--~~Q~fvT~t~~--~~~~~~~~~  349 (363)
T COG1195         275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IEL--GVQVFVTTTDL--EDIDDNLDE  349 (363)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-ccc--CCeEEEEccCH--HHhhhhhhc
Confidence            46999999999987765         46799999999999999999998887 332  23466666654  34554444 


Q ss_pred             --eEEEEeCCeE
Q 009033          104 --RLYLLSGGKT  113 (546)
Q Consensus       104 --~v~lL~~G~~  113 (546)
                        ++....+|++
T Consensus       350 ~~~~f~V~~g~i  361 (363)
T COG1195         350 NAQMFHVEDGKI  361 (363)
T ss_pred             cceEEEEeccee
Confidence              6777777775

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=93.20  E-value=0.08  Score=55.27  Aligned_cols=42  Identities=17%  Similarity=0.190  Sum_probs=36.4

Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009033           56 LFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF   99 (546)
Q Consensus        56 l~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~   99 (546)
                      +++|||+.+||+.++..+++.|++.. .+.++|+++|+|. .+.
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~-~ll  157 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAAD-KVL  157 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChH-hCh
Confidence            56789999999999999999999986 5689999999974 444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.15  E-value=0.086  Score=61.63  Aligned_cols=75  Identities=28%  Similarity=0.474  Sum_probs=63.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHh---CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009033           32 LRGISGGERRRVSIALEILM---RP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL  107 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~---~P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l  107 (546)
                      +..||||||-.-|+|-.++.   +| +++++||.-+.||..+.--|-+.+++-.+.-.=||++..   ...|+++||++=
T Consensus      1193 I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLR---nnMFELa~rLvG 1269 (1293)
T KOG0996|consen 1193 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLR---NNMFELANRLVG 1269 (1293)
T ss_pred             cccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEeh---hhHHHHHhhhee
Confidence            45699999999999999875   45 899999999999999999999999987765555555553   578999999987


Q ss_pred             Ee
Q 009033          108 LS  109 (546)
Q Consensus       108 L~  109 (546)
                      +.
T Consensus      1270 IY 1271 (1293)
T KOG0996|consen 1270 IY 1271 (1293)
T ss_pred             eE
Confidence            65

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=93.12  E-value=3.6  Score=43.96  Aligned_cols=137  Identities=10%  Similarity=0.062  Sum_probs=75.6

Q ss_pred             chHHHHHHHHHHHHhHHHHHHHHHhhhhhccccc--cCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 009033          314 GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRL--HPGF--IHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITG  389 (546)
Q Consensus       314 ~~~~y~la~~l~~lP~~~l~~~if~~i~Y~m~Gl--~~~~--~~f~~f~l~l~l~~~~~~sl~~~i~~~~p~~~~a~~~~  389 (546)
                      +...|++-+.++.....++.+++|+.+. +..+.  ...+  ..|+.+++..|+...+.-...-.+.++.+...++..+ 
T Consensus       240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~~~~~l-  317 (382)
T PF12051_consen  240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPFMPFWL-  317 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH-
Confidence            7888999999999999999999998886 44333  2333  3477777766655443221111122222222222111 


Q ss_pred             HHHHHHHHHHhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcCHHHHHhhhcCcccccch
Q 009033          390 AGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSK  469 (546)
Q Consensus       390 ~~~~~~~~l~~Gf~i~~~~iP~~~W~~~~~yiS~~~Ya~~~l~~nef~g~~f~~~~~~~~~~~G~~vL~~~~~~~~~~~~  469 (546)
                       +..++.-+-+++ .|.+-.|+ +.+| .| .-|++.+++++-.--|                         |-.. ...
T Consensus       318 -l~wvi~nv~~~~-~P~el~p~-fyr~-gy-a~P~~n~~~~~r~I~f-------------------------d~~~-~~l  366 (382)
T PF12051_consen  318 -LFWVILNVSSTF-YPLELSPG-FYRY-GY-AMPMHNIYEGLRVIFF-------------------------DTCK-GQL  366 (382)
T ss_pred             -HHHHHHhccccc-CChhhCcc-HHHH-hh-hhhHHHHHHHHHHhee-------------------------CCCc-ccc
Confidence             111222223443 35555666 4554 32 3388888887766422                         1111 125


Q ss_pred             hHHHHHHHHHHHHH
Q 009033          470 WIDLSVIFSMIISY  483 (546)
Q Consensus       470 w~~~~iL~~~~~~f  483 (546)
                      .+|+++|++++++-
T Consensus       367 g~n~gil~aw~~v~  380 (382)
T PF12051_consen  367 GRNYGILFAWIVVN  380 (382)
T ss_pred             cchHHHHHHHHHHH
Confidence            56888998887753

It is found in bacterial and eukaryotic proteins.

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.73  E-value=0.29  Score=53.38  Aligned_cols=71  Identities=21%  Similarity=0.304  Sum_probs=59.2

Q ss_pred             CCCHHHHHHHHHHHHHH---hCC-----CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 009033           34 GISGGERRRVSIALEIL---MRP-----RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL  105 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~---~~P-----~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v  105 (546)
                      .||-|||+-++.+--|+   -+|     +++++|.|.|.+|+....+++..++..+.+++-||+-+|+ ...+..++|.+
T Consensus       529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn-tYF~rd~~~~~  607 (758)
T COG4694         529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN-TYFYRDITLEL  607 (758)
T ss_pred             cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc-ceehHHHHhhh
Confidence            59999999988776654   354     5789999999999999999999999999999999999999 45555555544

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.68  E-value=0.083  Score=60.82  Aligned_cols=72  Identities=25%  Similarity=0.457  Sum_probs=56.1

Q ss_pred             cCCCCHHHHHHHHHHHHHHh---CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE
Q 009033           32 LRGISGGERRRVSIALEILM---RP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY  106 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~---~P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~  106 (546)
                      ...||||||=.|++...|+.   .| +++||||--+.||-.+...|-++|+.--.+..=||++.-+   -.|.-+|++.
T Consensus      1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKe---GMF~NANvLF 1155 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKE---GMFNNANVLF 1155 (1174)
T ss_pred             HHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchh---hccccchhhh
Confidence            45799999999888765543   45 8999999999999999999999999866555566776655   3566565554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	546
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		2e-08
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		5e-08
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		5e-08
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		6e-08
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		6e-08
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		6e-08
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		7e-08
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		7e-08
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		8e-08
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		8e-08
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		1e-07
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		1e-07
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		1e-07
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-07
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		1e-07
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		2e-07
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		2e-07
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-07
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-07
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		4e-07
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		4e-07
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		4e-07
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		4e-07
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		5e-07
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		5e-07
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		5e-07
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		7e-07
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		8e-07
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		9e-07
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		9e-07
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-06
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		1e-06
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-06
1g29_1	372	Malk Length = 372		5e-06
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		6e-06
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		6e-06
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		9e-06
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		1e-05
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		1e-05
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		2e-05
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		2e-05
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		3e-05
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		4e-05
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		5e-05
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		5e-05
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		8e-05
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		8e-05
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		9e-05
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		1e-04
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		1e-04
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-04
1yqt_A	538	Rnase-L Inhibitor Length = 538		3e-04
3qf7_A	365	The Mre11:rad50 Complex Forms An Atp Dependent Mole		5e-04
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		7e-04
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		7e-04

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
           DT++GN  ++ +SGGER+R++IA  +L  P+++  DE TS LDS   +   + +  L R 
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RK 203
Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
            RT+I   H+ S+      + + LL+ GK V  G
Sbjct: 204 NRTLIIIAHRLST--ISSAESIILLNKGKIVEKG 235

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE++RV++A  ++  P++L LDEP S LD        + L  L +  +  +  I   
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
            +E   + DR+ ++  GK +  G+    FE
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEIFE 217

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19  LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           L++  +T++G     G+SGG+R+R++IA  ++  P++L  DE TS LD  +   + + + 
Sbjct: 127 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 185
Query: 79  CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
            + + GRTVI   H+ S+   +  DR+ ++  GK V  G+
Sbjct: 186 KICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 222

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19  LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           L++  +T++G     G+SGG+R+R++IA  ++  P++L  DE TS LD  +   + + + 
Sbjct: 127 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 185
Query: 79  CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
            + + GRTVI   H+ S+   +  DR+ ++  GK V  G+
Sbjct: 186 KICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 222

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19  LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           L++  +T++G     G+SGG+R+R++IA  ++  P++L  DE TS LD  +   + + + 
Sbjct: 125 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 79  CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
            + + GRTVI   H+ S+   +  DR+ ++  GK V  G+
Sbjct: 184 KICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 220

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19  LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           L++  +T++G     G+SGG+R+R++IA  ++  P++L  DE TS LD  +   + + + 
Sbjct: 131 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 79  CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
            + + GRTVI   H+ S+   +  DR+ ++  GK V  G+
Sbjct: 190 KICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 226

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 16  EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 75
           ++GL+D A     + +   +SGG+ +RV+IA  + M P+++  DEPTS LD      V  
Sbjct: 146 KVGLKDKA-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 200
Query: 76  TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
            ++ L+ +G T++   H+      E+ DR+  + GG  +  G+    F+
Sbjct: 201 VMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEEGKPEDLFD 248

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 16  EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 75
           ++GL+D A     + +   +SGG+ +RV+IA  + M P+++  DEPTS LD      V  
Sbjct: 125 KVGLKDKA-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 179
Query: 76  TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
            ++ L+ +G T++   H+      E+ DR+  + GG  +  G+    F+
Sbjct: 180 VMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEEGKPEDLFD 227

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
           +TV+G   +  +SGG+++R++IA  +L  P++L LDE TS LD+   + V + L  L  D
Sbjct: 474 NTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MD 531
Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
           GRTV+   H+ S+   +  + + +L  GK   +G+
Sbjct: 532 GRTVLVIAHRLST--IKNANMVAVLDQGKITEYGK 564

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 10  VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 69
           VE+ ++E+  +   D ++     + +SGG+++RV++A  ++ +P++L  DEP S LD+  
Sbjct: 110 VEKRVVEIARKLLIDNLLDRKPTQ-LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL 168
Query: 70  AFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128
              +   ++ L ++ G T +   H   +E   +  R+ + + GK V +G     ++   +
Sbjct: 169 RMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMASRIAVFNQGKLVQYGTPDEVYD-SPK 226
Query: 129 AGFPCPALRNPSDHFLRCINSDFDKVKATLK 159
             F    + NP  +FLR  +   +  +  LK
Sbjct: 227 NMFVASFIGNPPTNFLRDFSVSVENKQTILK 257

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 12  RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 71
           R+ +E  + D  +T +G   ++ ISGG+R+R++IA   L  P++L LDE T+ LDS +  
Sbjct: 119 RSFVE-NMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 72  FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
            V + L  L + GRT +   H+ S+ V    D++Y +  G+    G+
Sbjct: 177 MVQKALDSLMK-GRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGK 220

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           SE   +VER     GL +     +  +     S G  R++ IA  +++ PRL  LDEPTS
Sbjct: 121 SEIEEMVERATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           GLD   A  V + L+  S++G T++ S H    EV  L DR+ L+  G  V  G
Sbjct: 176 GLDVLNAREVRKILKQASQEGLTILVSSHN-MLEVEFLCDRIALIHNGTIVETG 228

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
           +TV+G   +  +SGG+++R++IA  +L  P++L LDE TS LD+   + V + L  L  D
Sbjct: 505 NTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MD 562
Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
           GRTV+   H  S+   +  + + +L  GK   +G+
Sbjct: 563 GRTVLVIAHHLST--IKNANMVAVLDQGKITEYGK 595

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
           M L    DT +G   ++ +SGG+++R+SIA   L  P +L LDE TS LD  +   + + 
Sbjct: 461 MNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 77  LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 130
           L  LS+D  T+I + H+ S+      D++ ++  G  V   ET    E  A+ G
Sbjct: 520 LDVLSKDRTTLIVA-HRLSTITHA--DKIVVIENGHIV---ETGTHRELIAKQG 567

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19  LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           L++  +T++G     G+SGG+R+R++IA  ++  P++L  D+ TS LD  +   + + + 
Sbjct: 131 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMH 189
Query: 79  CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
            + + GRTVI   H+ S+   +  DR+ ++  GK V  G+
Sbjct: 190 KICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 226

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASI 91
           + +SGG+R+RV+I   ++  P +  LDEP S LD+A    +  +  R   R GRT+I   
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92  HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ---AGFPCPALRNPSDHFL--RC 146
           H    E   L D++ +L  G+    G+    + + A    AGF    + +P  +FL  + 
Sbjct: 192 HD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF----IGSPKMNFLPVKV 246
Query: 147 INSDFDKVKATL 158
             +  D+V+  L
Sbjct: 247 TATAIDQVQVEL 258

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASI 91
           + +SGG+R+RV+I   ++  P +  LDEP S LD+A    +  +  R   R GRT+I   
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92  HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ---AGFPCPALRNPSDHFL--RC 146
           H    E   L D++ +L  G+    G+    + + A    AGF    + +P  +FL  + 
Sbjct: 192 HD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF----IGSPKMNFLPVKV 246
Query: 147 INSDFDKVKATL 158
             +  D+V+  L
Sbjct: 247 TATAIDQVQVEL 258

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS----AAAFFVTQTLRCLSRDG 84
           N   R +SGG+++RV++A  ++  P LL LDEP S LD+    +A   V +     SR G
Sbjct: 135 NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE---VQSRLG 191
Query: 85  RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
            T++   H P +++F + DR+ +L  GK V  G+    ++
Sbjct: 192 VTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE+RRV+IA  I+  P +L LDEP  GLD      + + +      G+TVI   H  
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 95  SSEVFELFDRLYLLSGGKTVYFG 117
            + V    DR+ +L  GK V+ G
Sbjct: 201 ET-VINHVDRVVVLEKGKKVFDG 222

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE+RRV+IA  I+  P +L LDEP  GLD      + + +      G+TVI   H  
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 95  SSEVFELFDRLYLLSGGKTVYFG 117
            + V    DR+ +L  GK V+ G
Sbjct: 199 ET-VINHVDRVVVLEKGKKVFDG 220

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P  E R  V+  +   G++   D          +S G+++RV+IA  ++M P++L LDE
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELF-DRLYLLSGGKTVYFGE 118
           PT+GLD      + + L  + ++ G T+I + H    ++  L+ D ++++  G+ +  G 
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGN 227
Query: 119 TSAAF 123
               F
Sbjct: 228 PKEVF 232

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 3   WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 62
           WS    L+E+   ++ +       + N +   +SGG ++RV IAL +L+ P +L LDEPT
Sbjct: 124 WSHSE-LIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPT 182
Query: 63  SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 122
           S LD      + Q L+ L +  +  +  +    +   EL D++ ++ GG  V +  T   
Sbjct: 183 SALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNST--- 239
Query: 123 FEFFAQAGFPCPALRNPSDHFLR-------CINSDFDKVK 155
           F+ F          +NP   + R        +N+D  KVK
Sbjct: 240 FQIF----------KNPLHPYTRGLINSIMAVNADMSKVK 269

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASI 91
           + +SGG+R+RV+I   ++  P +  LD+P S LD+A    +  +  R   R GRT+I   
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92  HQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ---AGFPCPALRNPSDHFL--RC 146
           H    E   L D++ +L  G+    G+    + + A    AGF    + +P  +FL  + 
Sbjct: 192 HD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF----IGSPKMNFLPVKV 246
Query: 147 INSDFDKVKATL 158
             +  D+V+  L
Sbjct: 247 TATAIDQVQVEL 258

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGER+RV++A  ++++PRLL LDEP S +D      + + LR + R+    I  +   
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAF 123
             E   L D + ++  G+ V  G+    F
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELF 215

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 19   LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
            L D  +T +G+   + +SGG+++R++IA  ++ +P +L LDE TS LD+ +   V + L 
Sbjct: 1157 LPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 79   CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 130
              +R+GRT I   H+ S+   +  D + ++  GK    G      +  AQ G
Sbjct: 1216 K-AREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQ---QLLAQKG 1261

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 19   LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
            L D  +T +G+   + +SGG+++R++IA  ++ +P +L LDE TS LD+ +   V + L 
Sbjct: 1157 LPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 79   CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 130
              +R+GRT I   H+ S+   +  D + ++  GK    G      +  AQ G
Sbjct: 1216 K-AREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQ---QLLAQKG 1261

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 30  WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 88
           W L   SGG+++RV+IA  ++  P +L LDEP S LD+     V   L+ L ++ G T +
Sbjct: 132 WQL---SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188
Query: 89  ASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCIN 148
              H   +E   + DR+ ++  G+ +  G     + +  +  F    L NP  +F+    
Sbjct: 189 YVTHD-QAEALAMADRIAVIREGEILQVGTPDEVY-YKPKYKFVGGFLGNPPMNFVEAKV 246
Query: 149 SD 150
            D
Sbjct: 247 ED 248

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 93
           +SGG+++RVSIA  + M P +L  DEPTS LD      V + ++ L+ +G+T++   H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 19  LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           L++  +T++G     G+SGG+R+R++IA  ++  P++L  DE TS LD  +   + + + 
Sbjct: 125 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 79  CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
            + + GRTVI    + S+   +  DR+ ++  GK V  G+
Sbjct: 184 KICK-GRTVIIIAARLST--VKNADRIIVMEKGKIVEQGK 220

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 19  LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           L++  +T++G     G+SGG+R+R++IA  ++  P++L  DE TS LD  +   + + + 
Sbjct: 131 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 79  CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 118
            + + GRTVI    + S+   +  DR+ ++  GK V  G+
Sbjct: 190 KICK-GRTVIIIAARLST--VKNADRIIVMEKGKIVEQGK 226

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS----AAAFFVTQTLRCLSRDG 84
           N   R +SG +++RV++A  ++  P LL LDEP S LD+    +A   V +     SR G
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE---VQSRLG 191
Query: 85  RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
            T++   H P +++F + DR+ +L  GK V  G+    ++
Sbjct: 192 VTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 2   PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
           P  E +   E  + E+GL D       +     +SGGE++RV+IA  +   P LLF DEP
Sbjct: 113 PKKEAKERGEYLLSELGLGDKL-----SRKPYELSGGEQQRVAIARALANEPILLFADEP 167
Query: 62  TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
           T  LDSA    V      ++  G +++   H+   E+ EL  R   +  GK V
Sbjct: 168 TGNLDSANTKRVMDIFLKINEGGTSIVMVTHE--RELAELTHRTLEMKDGKVV 218

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 24  DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
           +T++G+   RG  +SGG+++R++IA  ++  P++L LDE TS LD+ +   V Q L   +
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601
Query: 82  RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 131
           + GRT I   H+ S+      D +     G+ V  G+  A     AQ G 
Sbjct: 602 K-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRA---LMAQQGL 645

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 10  VERTIIEMGLQDCAD----TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 65
           V R  I+  +++ A+    T + N   R +SGG+R+RV++   I+ +P++  +DEP S L
Sbjct: 111 VPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 66  DSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
           D+     +   L+ L R  G T I   H    E   + DR+ +++ G     G     ++
Sbjct: 171 DAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
Query: 125 FFAQ---AGFPCPALRNPSDHFLRCINSD 150
             A    AGF    + +P  +FL  I ++
Sbjct: 230 KPANTFVAGF----IGSPPMNFLDAIVTE 254

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)
Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+R+RV++A  I++ P +L +DEP S LD+     +   ++ L +  +     +   
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAF 123
             E   + DR+ +++ G+ +  G  +  +
Sbjct: 202 QVEAMTMGDRIAVMNRGQLLQIGSPTEVY 230

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 47/89 (52%)
Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGG+R+RV++A  I++ P +L +DEP S LD+     +   ++ L +  +     +   
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 202
Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAF 123
             E   + DR+ +++ G+ +  G  +  +
Sbjct: 203 QVEAMTMGDRIAVMNRGQLLQIGSPTEVY 231

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTV 87
           N     +SGG+++RV+IA  +   P ++  DEPT  LDS     + Q L+ L+  DG+TV
Sbjct: 140 NHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTV 199
Query: 88  IASIH 92
           +   H
Sbjct: 200 VVVTH 204

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 25  TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-D 83
           T +       +SGG+R+ + IA  I    +L+ LDEPTS LD A    V   L  L++  
Sbjct: 119 THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
             TV+ + HQP ++V  + ++  LL+  +   FGET
Sbjct: 179 NMTVVFTTHQP-NQVVAIANKTLLLN-KQNFKFGET 212

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 83
           DTVIG  +   +SGG+R+RV+IA  +L    +L LDE TS LD+ +   +   L  L ++
Sbjct: 471 DTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 84  GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 130
            +TV+   H+ S+   E  D + ++  G+ +  G  +   +  AQ G
Sbjct: 530 -KTVLVIAHRLST--IEQADEILVVDEGEIIERGRHA---DLLAQDG 570

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 19  LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           + +  DT+IG   +  +SGG+R+R++IA  +L    +L LDE TS LD+ +   +   L 
Sbjct: 466 MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 79  CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 130
            L ++ RT +   H+ S+   E  D + ++  G  V  G  S   E  AQ G
Sbjct: 525 ELQKN-RTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHS---ELLAQHG 570

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR-------PRLLFLDEPTSGLDSAA 69
           M   DC    +     R +SGGE++RV +A  +L +       PR LFLDEPTS LD   
Sbjct: 126 MAQTDC--LALAQRDYRVLSGGEQQRVQLA-RVLAQLWQPQPTPRWLFLDEPTSALDLYH 182
Query: 70  AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
                + LR L+R     +  +    +      DR+ LL+ GK V  G
Sbjct: 183 QQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACG 230

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTV 87
           N     +SGG+++RV+IA  +   P ++  D+PT  LDS     + Q L+ L+  DG+TV
Sbjct: 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTV 199
Query: 88  IASIH 92
           +   H
Sbjct: 200 VVVTH 204

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           +  L  +SGGE +RV+IA  +L +    F DEP+S LD      V + +R L+ +G+ V+
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 89  ASIHQPSSEVFELFDRLYLLSGGKTVY 115
              H  +   + L D ++++ G   VY
Sbjct: 283 VVEHDLAVLDY-LSDVIHVVYGEPGVY 308

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           +  L  +SGGE +RV+IA  +L +    F DEP+S LD      V + +R L+ +G+ V+
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Query: 89  ASIHQPSSEVFELFDRLYLLSGGKTVY 115
              H  +   + L D ++++ G   VY
Sbjct: 269 VVEHDLAVLDY-LSDVIHVVYGEPGVY 294

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTV 87
           N   R +SGG+R+RV++   I+ RP++   DEP S LD+         L+ L R  G T 
Sbjct: 137 NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTT 196
Query: 88  IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
           I   H    E     DR+ + + G+    G     +
Sbjct: 197 IYVTHD-QVEAXTXGDRIAVXNKGELQQVGTPDEVY 231

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 25  TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 84
           T +G   L+ +SGGE++RV+IA  IL  P ++ LDE TS LD++    +  +L  +  + 
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN- 239
Query: 85  RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121
           RT I   H+ S+ V    D++ ++  G  V  G   A
Sbjct: 240 RTTIVVAHRLSTVVN--ADQILVIKDGCIVERGRHEA 274

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-----GRTVIA 89
           +SGG+++RV++A  +  RP++L  DEP + +D+     + + LR   R      G T + 
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ----IRRELRTFVRQVHDEMGVTSVF 201
Query: 90  SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
             H    E  E+ DR+ +L  G    FG     +E
Sbjct: 202 VTHD-QEEALEVADRVLVLHEGNVEQFGTPEEVYE 235

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 28  GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRT 86
            N     +SGG+++RV+IA  +   P ++  D+PT  LDS     + Q L+ L+  DG+T
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKT 198
Query: 87  VIASIH 92
           V+   H
Sbjct: 199 VVVVTH 204

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 19  LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 78
           + +  DTVIG   +  +SGG+R+R++IA  +L    +L LDE TS LD+ +   +   L 
Sbjct: 466 MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 79  CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
            L ++ RT +   H+ S+   E  D + ++  G  V  G  +   E
Sbjct: 525 ELQKN-RTSLVIAHRLST--IEKADEIVVVEDGVIVERGTHNDLLE 567

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 33  RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 92
           R  SGG+++R+SIA  ++ +P++L LD+ TS +D      +   L+  ++   T I +  
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQK 537
Query: 93  QPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
            P++    L D++ +L  GK   FG      E
Sbjct: 538 IPTA---LLADKILVLHEGKVAGFGTHKELLE 566

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 4   SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
           SE R  +++ +  +GL   A     N     +SGG+++R++IA  +    R L LDEP S
Sbjct: 115 SEMRKRIKKVLELVGLSGLAAADPLN-----LSGGQKQRLAIASMLARDTRFLALDEPVS 169
Query: 64  GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 123
            LD  +   + Q L  L  +G+ +I   H+   E  +  D +  +S G   + G    ++
Sbjct: 170 MLDPPSQREIFQVLESLKNEGKGIILVTHE--LEYLDDMDFILHISNGTIDFCG----SW 223
Query: 124 EFFAQAGF 131
           E F +  F
Sbjct: 224 EEFVEREF 231

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 31  HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 90
            ++ +SGGE +RV+IA  +L      F DEP+S LD        + +R LS +G++V+  
Sbjct: 155 EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 91  IH 92
            H
Sbjct: 215 EH 216

>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular Clamp In Dna Double-Strand Break Repair Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 26  VIGNWHL----RGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQ 75
           +I +W +    RG+SGGER  +SI+L + +      R    F+DE  S LD+     +  
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS 326
Query: 76  TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
            L+ L R  + ++   H    E  E FDR   ++GG  V
Sbjct: 327 VLKELERLNKVIVFITH--DREFSEAFDRKLRITGGVVV 363

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 24  DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSR 82
           DT +G    + +SGG+R+ V++A  ++ +PRLL LD+ TS LD+     V + L      
Sbjct: 147 DTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEW 205
Query: 83  DGRTVIASIHQPS 95
             RTV+   HQ S
Sbjct: 206 ASRTVLLITHQLS 218

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           +SGGE++ ++I   +  RP+LL  DEP+ GL       V + ++ ++++G T++  + Q 
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL-VEQN 198
Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
           +    ++    Y+L  G+ V  G+ S   +
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASELLD 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	546
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	3e-19
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	5e-19
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	5e-18
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	6e-18
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	6e-18
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-16
1sgw_A	214	Putative ABC transporter; structural genomics, P p	1e-15
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-13
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	5e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	6e-12
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	6e-10
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	9e-12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-10
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-11
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	3e-11
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	4e-11
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-10
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	3e-10
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	6e-10
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	1e-09
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-09
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	9e-09
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-08
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	3e-08
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	3e-08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	8e-08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-06
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	1e-07
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-07
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-07
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	1e-06
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	1e-06
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-06
1b0u_A	262	Histidine permease; ABC transporter, transport pro	3e-06
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	9e-06
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	5e-05
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	5e-05
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	5e-05
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	7e-05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	9e-05
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-04
1ji0_A	240	ABC transporter; ATP binding protein, structural g	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 86.4 bits (215), Expect = 3e-19
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 6/117 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
              SE   +VER     GL +     +  +     S G  R++ IA  +++ PRL  LDE
Sbjct: 118 SSSSEIEEMVERATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDE 172

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           PTSGLD   A  V + L+  S++G T++ S H    EV  L DR+ L+  G  V  G
Sbjct: 173 PTSGLDVLNAREVRKILKQASQEGLTILVSSHN-MLEVEFLCDRIALIHNGTIVETG 228

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 85.7 bits (213), Expect = 5e-19
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 3   WSEK-RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
                  +  + +  + L   A     +     +SGG+R+ + IA  I    +L+ LDEP
Sbjct: 101 PKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEP 155

Query: 62  TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           TS LD A    V   L  L++    TV+ + HQP+  V  + ++  LL+      FGET 
Sbjct: 156 TSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQN-FKFGETR 213

Query: 121 AAF 123
              
Sbjct: 214 NIL 216

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 83.4 bits (207), Expect = 5e-18
 Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGGE+RRV+IA  I+  P +L LDEP  GLD      + + +      G+TVI   H   
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI- 198

Query: 96  SEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 129
             V    DR+ +L  GK V+ G      EF  + 
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGTRM---EFLEKY 229

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 83.0 bits (206), Expect = 6e-18
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 10/130 (7%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P  E R  V+  +   G++   D       L   S G+++RV+IA  ++M P++L LDE
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDKPT--HCL---SFGQKKRVAIAGVLVMEPKVLILDE 169

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           PT+GLD      + + L  + ++ G T+I + H     V    D ++++  G+ +  G  
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNP 228

Query: 120 SAAFEFFAQA 129
               E FA+ 
Sbjct: 229 K---EVFAEK 235

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 83.0 bits (206), Expect = 6e-18
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 2   PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
              E R    + +  +G+   A   IG      +S GE++RV IA  ++ +P++L LDEP
Sbjct: 134 IDDEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEP 188

Query: 62  TSGLDSAAAFFVTQTLRCLSRDGR--TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
            +GLD  A   +   L  LS       +I   H    E+   F ++ LL  G+++  G  
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAV 247

Query: 120 SAAF 123
               
Sbjct: 248 EDIL 251

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 26/133 (19%)

Query: 2   PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-------LEILMRPR 54
               +  L+      + L D             +SGGE +RV +A        +     +
Sbjct: 100 DK-TRTELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 153

Query: 55  LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL------FDRLYLL 108
           LL LDEP + LD A    + + L  LS+ G  ++ S H       +L        R +LL
Sbjct: 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSH-------DLNHTLRHAHRAWLL 206

Query: 109 SGGKTVYFGETSA 121
            GGK +  G    
Sbjct: 207 KGGKMLASGRREE 219

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 75.2 bits (186), Expect = 1e-15
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +  ++    +   +  + + D    +        +S G  RRV +A  +L+   +  LD+
Sbjct: 108 VKVNKNE--IMDALESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDD 159

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
           P   +D  +   V +++  + ++   VI S    S E     D    L    T 
Sbjct: 160 PVVAIDEDSKHKVLKSILEILKEKGIVIIS----SREELSYCDVNENLHKYSTK 209

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 70.4 bits (173), Expect = 5e-13
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 10  VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 69
               +  + + D  D       ++ +SGGE +RV+I L + +   +  +DEP++ LDS  
Sbjct: 448 QTDVVKPLRIDDIID-----QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502

Query: 70  AFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128
               ++ +R       +T     H        L D++ +  G  +       A       
Sbjct: 503 RIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKN-AHARAPES---- 556

Query: 129 AGFPCPALRNPSDHFLRCINSDF 151
                  L    + FL+ +N  F
Sbjct: 557 -------LLTGCNRFLKNLNVTF 572

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           +    V+R I  + L++     +    +  +SGGE +R +I +  +    +   DEP+S 
Sbjct: 197 KSPEDVKRYIKILQLEN-----VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY 251

Query: 65  LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 115
           LD        Q +R L    + VI   H   S +  L D + ++ G  +VY
Sbjct: 252 LDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 2   PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
             S      E     + L    ++     ++  +SGGE +++ IA  +     L  LD+P
Sbjct: 358 ALSTSSWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIAATLAKEADLYVLDQP 412

Query: 62  TSGLDSAAAFFVTQTLRCLSRDGRTVIASI-HQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           +S LD    + V + ++ ++R+ + V   I H   S    + DR+ +  G      G  +
Sbjct: 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKA-GLAT 470

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLK 159
           +               +   + FLR +   F +   T +
Sbjct: 471 SPVTL-----------KTGMNEFLRELEVTFRRDAETGR 498

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 17/177 (9%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +   ++R   +     + + +  +          +SGG  +R+ +A  +L    +   D+
Sbjct: 110 LTKIDERGKKDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQ 164

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           P+S LD      + + +R L +  + VI   H     +  L D ++++ G  +VY G  S
Sbjct: 165 PSSYLDVRERMNMAKAIRELLK-NKYVIVVDHD-LIVLDYLTDLIHIIYGESSVY-GRVS 221

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLRCINSDF--DKVKATLKGSMKLKFETSDDPLEK 175
            ++            + N    +L   N     D++K  LK    L          K
Sbjct: 222 KSY-------AARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMK 271

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 66.9 bits (164), Expect = 6e-12
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 18/145 (12%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +  +++   +E  +  + L++  +  I +     +SGGE +RV+IA  +L      F DE
Sbjct: 130 LKKADETGKLEEVVKALELENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDE 184

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           P+S LD        + +R LS +G++V+   H  +  +  L D ++++ G   VY G  S
Sbjct: 185 PSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAV-LDYLSDIIHVVYGEPGVY-GIFS 242

Query: 121 AAFEFFAQAGFPCPALRNPSDHFLR 145
                           RN  + FLR
Sbjct: 243 QPKGT-----------RNGINEFLR 256

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
                    +  +G+ D  D       +  +SGGE +RV+IA  +L    +  LDEP++ 
Sbjct: 377 NSNFYKTELLKPLGIIDLYDR-----EVNELSGGELQRVAIAATLLRDADIYLLDEPSAY 431

Query: 65  LDSAAAFFVTQTLRCLS-RDGRTVI 88
           LD      V++ +R L  ++ +T +
Sbjct: 432 LDVEQRLAVSRAIRHLMEKNEKTAL 456

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 66.6 bits (163), Expect = 9e-12
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 16/104 (15%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           ++    E  + E+ L++  D  +       +SGGE +RV+IA  +L +    F DEP+S 
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSY 258

Query: 65  LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 108
           LD      V + +R L+ +G+ V+   H            L +L
Sbjct: 259 LDIRQRLKVARVIRRLANEGKAVLVVEH-----------DLAVL 291

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
                    +  +G+ D  D      ++  +SGGE +RV+IA  +L    +  LDEP++ 
Sbjct: 447 NSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501

Query: 65  LDSAAAFFVTQTLRCLSRD-GRTVI 88
           LD      V++ +R L     +T +
Sbjct: 502 LDVEQRLAVSRAIRHLMEKNEKTAL 526

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 8/77 (10%)

Query: 17  MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
             L    DT++GN   +G+  SGGER+R++IA  +L  P+++  DE TS LDS   +   
Sbjct: 139 EALPKKWDTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195

Query: 75  QTLRCLSRDGRT--VIA 89
           + +  L +  RT  +IA
Sbjct: 196 KAVEDLRK-NRTLIIIA 211

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 8/77 (10%)

Query: 17  MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
           M   +   T +G    RG  +SGGE++RV+IA  IL  P ++ LDE TS LD++    + 
Sbjct: 174 MAFPEGYRTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230

Query: 75  QTLRCLSRDGRT--VIA 89
            +L  +    RT  V+A
Sbjct: 231 ASLAKVCA-NRTTIVVA 246

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 62.1 bits (152), Expect = 4e-11
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 8/77 (10%)

Query: 17  MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
             + D  +T +G    RG+  SGG+R+R++IA   L  P++L LDE T+ LDS +   V 
Sbjct: 123 ENMPDQLNTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 75  QTLRCLSRDGRT--VIA 89
           + L  L + GRT  VIA
Sbjct: 180 KALDSLMK-GRTTLVIA 195

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 61.0 bits (149), Expect = 1e-10
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 6/78 (7%)

Query: 17  MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
             L++  +T++G    +G   SGG+R+R++IA  ++  P++L  DE TS LD  +   + 
Sbjct: 129 SELREGYNTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185

Query: 75  QTLRCLSRDGRTVIASIH 92
           + +  + + GRTVI   H
Sbjct: 186 RNMHKICK-GRTVIIIAH 202

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 17  MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
            G     DT +G     G   SGG+R+ V++A  ++ +PRLL LD  TS LD+     V 
Sbjct: 140 SGFPQGYDTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196

Query: 75  QTL-RCLSRDGRTVI 88
           + L        RTV+
Sbjct: 197 RLLYESPEWASRTVL 211

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 94
           S G+   V  +L +  +P ++ LDEP   +D+A        +    ++ G+  I   H+ 
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAA----RRHVISRYIKEYGKEGILVTHE- 184

Query: 95  SSEVFELFDRL-YLLSGGKTVYFG 117
              +    +   Y L G +     
Sbjct: 185 LDMLNLYKEYKAYFLVGNRLQGPI 208

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLD 59
            P  E +   E  + E+GL D              +SGGE++RV+IA  +   P LLF D
Sbjct: 112 KPKKEAKERGEYLLSELGLGDKLS------RKPYELSGGEQQRVAIARALANEPILLFAD 165

Query: 60  EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 114
           EPT  LDSA    V      ++  G +++   H+   E+ EL  R   +  GK V
Sbjct: 166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER--ELAELTHRTLEMKDGKVV 218

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 17  MGLQDCADTVIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
           M L    DT++G    RG   SGG+++R++IA  ++  P++L LDE TS LD+ +   V 
Sbjct: 510 MKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ 566

Query: 75  QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
             L      GRT I   H+ S+      D +    GG  V  G
Sbjct: 567 AALDKARE-GRTTIVIAHRLST--VRNADVIAGFDGGVIVEQG 606

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 17   MGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 74
              L D  +T +G+   +G  +SGG+++R++IA  ++ +P +L LDE TS LD+ +   V 
Sbjct: 1155 DSLPDKYNTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211

Query: 75   QTLRCLSRDGRTVIA 89
            + L      GRT I 
Sbjct: 1212 EALDKARE-GRTCIV 1225

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 24  DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
           DT +G    RG  +SGG+++R+SIA   L  P +L LDE TS LD  +   + + L  LS
Sbjct: 468 DTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524

Query: 82  RDGRT--VIA 89
           +  RT  ++A
Sbjct: 525 K-DRTTLIVA 533

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 36  SGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 89
           SGGER  + +A  + M         LL LDEPT  LD      +   +    +    VI 
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309

Query: 90  SIHQPSSEVFELFDRLYLL 108
             H    E+ +  D +  +
Sbjct: 310 VSHDE--ELKDAADHVIRI 326

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 54.3 bits (130), Expect = 8e-08
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 32  LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 91
           +RG+SGG++ ++ +A     RP L+ LDEPT+ LD  +   +++ L+    +G  +I + 
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK--EFEGGVIIIT- 955

Query: 92  HQPSSEVF--ELFDRLYLLSGGKTVYFG 117
           H   S  F   L + ++ +  G+    G
Sbjct: 956 H---SAEFTKNLTEEVWAVKDGRMTPSG 980

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 5   EKRTLVERTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 63
             +  ++  +IE G   +     I       +SGG + ++++A  +L    +L LDEPT+
Sbjct: 523 GTKEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARAVLRNADILLLDEPTN 577

Query: 64  GLDSAAAFFVTQTLR 78
            LD+    ++   L 
Sbjct: 578 HLDTVNVAWLVNYLN 592

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP 94
           SGG+++RV+IA  +   P ++  D+PT  LDS     + Q L+ L+  DG+TV+   H  
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 24  DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
           DT+IG     G  +SGG+R+R++IA  +L    +L LDE TS LD+ +   +   L  L 
Sbjct: 471 DTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527

Query: 82  RDGRT--VIA 89
           +  RT  VIA
Sbjct: 528 K-NRTSLVIA 536

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 8/70 (11%)

Query: 24  DTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 81
           DTVIG     G  +SGG+R+RV+IA  +L    +L LDE TS LD+ +   +   L  L 
Sbjct: 471 DTVIGE---NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ 527

Query: 82  RDGRT--VIA 89
           +  +T  VIA
Sbjct: 528 K-NKTVLVIA 536

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 36  SGGERRRVSIAL-----EILMRPRL--LFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           SGGE+  V+++L       L+  R+  + LDEPT  LD      + +  R +    + +I
Sbjct: 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMII 341

Query: 89  ASIHQPSSEVFELFDRLY 106
            + H    E+ ++ D + 
Sbjct: 342 IT-HHR--ELEDVADVII 356

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 36  SGGERRRVSIALEILMR------PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           SGGER  + +A  + M         LL LDEPT  LD      +   +    +    VI
Sbjct: 59  SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 3   WSEKRTLVER--TIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 59
             ++  +VE+   I+E + L    D   G      +SGG+ + V I   ++  P+++ +D
Sbjct: 124 IPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMD 178

Query: 60  EPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           EP +G+    A  +   +  L   G T +
Sbjct: 179 EPIAGVAPGLAHDIFNHVLELKAKGITFL 207

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
           SGG+++RVSIA  + M P +L  DEPTS LD      V + ++ L+ +G+T++
Sbjct: 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 207

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           SGG+ +RV+IA  + M P+++  DEPTS LD      V   ++ L+ +G T++   H   
Sbjct: 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH--- 217

Query: 96  SEV-F--ELFDRLYLLSGGKTVYFGETSAAFEFFA 127
            E+ F  E+ DR+  + GG  +   E     + F 
Sbjct: 218 -EMGFAREVGDRVLFMDGGYII---EEGKPEDLFD 248

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 18/31 (58%), Positives = 26/31 (83%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           SGGER+RV++A  ++++PRLL LDEP S +D
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVD 158

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 94
           SGG+++RV+IA  +   P++L  D+ TS LD A    + + L+ ++R  G T++   H+ 
Sbjct: 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 128
              V  + D + ++S G+ +   E     E F+ 
Sbjct: 225 DV-VKRICDCVAVISNGELI---EQDTVSEVFSH 254

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 16/108 (14%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 95
           S G ++ + +A  +L + ++L LDEP++ LD      + +TL+    D  TVI    +  
Sbjct: 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFAD-CTVILCEARIE 215

Query: 96  SEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHF 143
           + +    D+  ++   K   +                      P+D F
Sbjct: 216 AML--ECDQFLVIEENKVRQYDS-------------ILELYHYPADRF 248

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 3   WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI---SGGERRRVSIALEI----LMRPRL 55
            +  R  ++    + G     D        R     SGGER  +SI+L +    +   RL
Sbjct: 250 LTNGRFDIDFDDEKGGFII-KDW----GIERPARGLSGGERALISISLAMSLAEVASGRL 304

Query: 56  --LFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
              F+DE  S LD+     +   L+ L R  + ++
Sbjct: 305 DAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           SGGE++RV++A  ++  P++L LDEP S LD
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALD 159

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           SGG+++R ++A  +   P L+ LDEP S LD
Sbjct: 140 SGGQQQRAALARALAPDPELILLDEPFSALD 170

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 13/31 (41%), Positives = 23/31 (74%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLD 66
           SGG+++RV++A  +  RP++L  DEP + +D
Sbjct: 147 SGGQQQRVALARALAPRPQVLLFDEPFAAID 177

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 7/89 (7%)

Query: 36  SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ---TLRCLSRDGRTVIASIH 92
           SGGE++ ++I   ++ RP+LL +DEP+ GL   A   V++    ++ ++++G T++  + 
Sbjct: 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFEVIQKINQEGTTILL-VE 196

Query: 93  QPSSEVFELFDRLYLLSGGKTVYFGETSA 121
           Q +    ++    Y+L  G+ V  G+ S 
Sbjct: 197 QNALGALKVAHYGYVLETGQIVLEGKASE 225

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 56/493 (11%), Positives = 124/493 (25%), Gaps = 125/493 (25%)

Query: 85  RTVIAS------IHQPSSE--VFELFDRLYLLSGGKTVY-FGETSAA--FEFFAQA-GFP 132
           +++++       I    +      LF  L L    + V  F E      ++F        
Sbjct: 43  KSILSKEEIDHIIMSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 133 CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTS 192
                  +  ++   +  ++  +   K ++     +   P  K+  A          +  
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQA--------LLELR 148

Query: 193 QHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRL---V 249
                  + V G  K   T +      +  +                DF  +WL L    
Sbjct: 149 PAKNVLIDGVLGSGK---TWVALDVCLSYKVQCKM------------DFKIFWLNLKNCN 193

Query: 250 IYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERL 309
               V   +  +   +   + S     S                    +  ++   R  L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSS---------------NIKLRIHSIQAELRRLL 238

Query: 310 NGHYGVTAFVI------GNTLSAMPF---LIMIT-------FISGTICY--FMVRLHPGF 351
                    ++          +A      +++ T       F+S        +       
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 352 IHYL---FFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPND 408
                    +  L       + L   + +  P   + II    I+              D
Sbjct: 299 TPDEVKSLLLKYLDCR---PQDLPREVLTTNP-RRLSII-AESIR--------------D 339

Query: 409 IPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRS 468
                W     +   +   L    ++ L     +   P   +    +   +VF       
Sbjct: 340 GLA-TWDN---WKHVNCDKLTTIIESSL-----NVLEPAEYR--KMFDRLSVFPPSA--- 385

Query: 469 KWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQQKNGTQNTTVAPDR-LT 527
             I   ++   +I + +I   ++ +           L +  + +K   ++T   P   L 
Sbjct: 386 -HIPTILL--SLIWFDVIKSDVMVVVNK--------LHKYSLVEKQPKESTISIPSIYLE 434

Query: 528 QSPSLRNYVANHA 540
               L N  A H 
Sbjct: 435 LKVKLENEYALHR 447

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	546
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.93
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.92
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.92
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.92
1g6h_A	257	High-affinity branched-chain amino acid transport	99.92
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.91
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.91
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.91
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.91
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.91
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.91
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.91
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.91
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.91
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.9
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.9
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.9
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.9
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.9
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.9
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.9
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.9
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.9
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.9
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.89
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.89
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.87
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.87
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.87
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.87
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.86
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.86
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.84
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.83
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.83
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.83
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.83
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.83
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.82
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.82
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.81
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.81
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.81
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.81
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.81
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.8
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.8
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.79
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.78
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.78
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.78
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.78
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.77
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.77
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.77
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.76
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.76
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.75
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.75
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.75
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.74
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.74
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.73
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.73
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.73
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.73
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.72
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.71
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.7
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.66
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.55
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.54
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.54
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.54
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.52
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.44
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.41
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.37
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.34
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.33
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.14
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.12
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.91
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.9
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.65
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.63
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.63
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.61
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.58
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.56
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.53
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.47
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.3
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.27
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.26
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.23
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.22
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.19
2og2_A	359	Putative signal recognition particle receptor; nuc	98.15
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.14
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.09
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.07
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.06
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.98
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.94
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.94
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.86
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.73
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.71
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.66
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.65
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.49
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.38
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.33
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.2
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.02
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.9
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.9
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.74
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.27
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.25
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.18
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.11
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.09
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.07
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.02
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.56
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.46
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.46
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.39
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.31
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.72
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	94.52
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.91
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	93.73
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	93.33
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	93.26
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	92.8
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	91.97
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	91.02
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	90.08
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	89.9
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	89.68
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	89.54
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	88.48
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	88.42
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	87.37
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	85.56
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	85.38
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	82.54
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	81.81
2eyu_A	261	Twitching motility protein PILT; pilus retraction	81.81
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	81.36
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	81.29
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	80.37

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.93  E-value=2.5e-25  Score=224.15  Aligned_cols=117  Identities=28%  Similarity=0.459  Sum_probs=107.2

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++.+|+.+     .+|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus       116 ~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~  190 (275)
T 3gfo_A          116 PEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ  190 (275)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence            35566788999999999999888855     4699999999999999999999999999999999999999999999998


Q ss_pred             -hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 -RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 -~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                       ++|+|||+++|++ .++.+++|+|++|++|++++.|+++++.+
T Consensus       191 ~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~~~~  233 (275)
T 3gfo_A          191 KELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFA  233 (275)
T ss_dssp             HHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred             hhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence             5699999999996 67889999999999999999999988643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.92  E-value=4.3e-25  Score=229.81  Aligned_cols=116  Identities=28%  Similarity=0.416  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||.+.+|+.+     .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus       136 ~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~  210 (366)
T 3tui_C          136 PKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN  210 (366)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence            45667788999999999999888754     5799999999999999999999999999999999999999999999998


Q ss_pred             h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + .|.|||++||++ .++.++||||++|++|++++.|+++++.
T Consensus       211 ~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~  252 (366)
T 3tui_C          211 RRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF  252 (366)
T ss_dssp             HHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred             HhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            6 599999999995 7899999999999999999999998764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.92  E-value=1.8e-24  Score=216.63  Aligned_cols=115  Identities=28%  Similarity=0.442  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            3 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +++.+++++++++.+||.+..|+.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus       133 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~  207 (263)
T 2olj_A          133 REKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN  207 (263)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence            3455678899999999998888755     46999999999999999999999999999999999999999999999988


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +|+|||+++|++ .++.+++|++++|++|++++.|+++++.
T Consensus       208 ~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~  247 (263)
T 2olj_A          208 EGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF  247 (263)
T ss_dssp             TTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             CCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            899999999995 7888999999999999999999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.92  E-value=1.6e-24  Score=217.06  Aligned_cols=115  Identities=26%  Similarity=0.404  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +++.+++++++++.+||.+. .++.+     .+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       126 ~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~  200 (262)
T 1b0u_A          126 KHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA  200 (262)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCchhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence            34556788999999999988 88755     4699999999999999999999999999999999999999999999998


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++|+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       201 ~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~  241 (262)
T 1b0u_A          201 EEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVF  241 (262)
T ss_dssp             HTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            8899999999995 7888999999999999999999988764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.92  E-value=1.5e-24  Score=216.54  Aligned_cols=111  Identities=23%  Similarity=0.362  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||++..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|
T Consensus       129 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g  203 (257)
T 1g6h_A          129 EMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG  203 (257)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCchhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence            456788999999999988888654     699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhH
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~  121 (546)
                      +|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus       204 ~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          204 ITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             CEEEEECSCC-STTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             CEEEEEecCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            9999999996 67889999999999999999999887

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.91  E-value=2.7e-24  Score=225.14  Aligned_cols=117  Identities=26%  Similarity=0.427  Sum_probs=108.1

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++..|+.+     .+|||||||||+|||+|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus       106 ~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~  180 (381)
T 3rlf_A          106 KKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH  180 (381)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence            45677889999999999999888854     5799999999999999999999999999999999999999999999997


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ++ |.|+|++||++ .++..++|||++|++|+++..|+++++.+
T Consensus       181 ~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~  223 (381)
T 3rlf_A          181 KRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH  223 (381)
T ss_dssp             HHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            64 99999999994 88999999999999999999999998753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.91  E-value=2.7e-24  Score=223.58  Aligned_cols=117  Identities=21%  Similarity=0.378  Sum_probs=106.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++..|+.+     .+|||||||||+|||+|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus       111 ~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~  185 (359)
T 3fvq_A          111 RTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL  185 (359)
T ss_dssp             CSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            34567788999999999999988855     5699999999999999999999999999999999999999999888876


Q ss_pred             -hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 -RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 -~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                       +.|.|+|++||+ ..++..++|||++|++|+++..|+++++.+
T Consensus       186 ~~~g~tvi~vTHd-~~ea~~~aDri~vl~~G~i~~~g~~~el~~  228 (359)
T 3fvq_A          186 RANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHELYR  228 (359)
T ss_dssp             HHTTCEEEEECCC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhCCCEEEEEeCC-HHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence             469999999999 488999999999999999999999998753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.91  E-value=4.7e-24  Score=212.80  Aligned_cols=115  Identities=37%  Similarity=0.438  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||++..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus       121 ~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~  195 (256)
T 1vpl_A          121 SEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE  195 (256)
T ss_dssp             HHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC
Confidence            344567899999999998888865     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |+|||+++|++ .++..++|++++|++|++++.|+++++.+
T Consensus       196 g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  235 (256)
T 1vpl_A          196 GLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE  235 (256)
T ss_dssp             TCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             CCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence            99999999995 77888999999999999999999887644

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.91  E-value=4.5e-24  Score=210.96  Aligned_cols=111  Identities=29%  Similarity=0.430  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~   85 (546)
                      +++++++++.+||.+..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ +|+
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~  178 (240)
T 2onk_A          104 DRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV  178 (240)
T ss_dssp             HHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            577899999999998888865     46999999999999999999999999999999999999999999999976 499


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       179 tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  215 (240)
T 2onk_A          179 PILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             CEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999995 7788999999999999999999988764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.91  E-value=5.1e-24  Score=208.48  Aligned_cols=109  Identities=32%  Similarity=0.385  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||.+..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus       115 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~  189 (224)
T 2pcj_A          115 KEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG  189 (224)
T ss_dssp             HHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence            445678899999999998888855     469999999999999999999999999999999999999999999999878


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET  119 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~  119 (546)
                      |+|||+++|++ .++ +++|++++|++|++++.|+.
T Consensus       190 g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~  223 (224)
T 2pcj_A          190 GTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR  223 (224)
T ss_dssp             TCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence            99999999995 555 89999999999999999863

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.91  E-value=4.5e-24  Score=214.14  Aligned_cols=113  Identities=32%  Similarity=0.425  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLR   78 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~------~P~il~LDEPtsgLD~~~~~~v~~~L~   78 (546)
                      +.+++++++++.+||.+..++.+     ..|||||||||+||++|+.      +|++|+|||||+|||+.++.++++.|+
T Consensus       117 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~  191 (266)
T 4g1u_C          117 QDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR  191 (266)
T ss_dssp             THHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            45678899999999999888855     4699999999999999999      999999999999999999999999999


Q ss_pred             HHHhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           79 CLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        79 ~l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus       192 ~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~~~  236 (266)
T 4g1u_C          192 QLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEEVL  236 (266)
T ss_dssp             HHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred             HHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            99875 57999999995 7889999999999999999999998763

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.91  E-value=4.3e-24  Score=210.49  Aligned_cols=113  Identities=26%  Similarity=0.354  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            3 WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         3 ~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +++..+++.++++.+||.+. .++.     +.+|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus       118 ~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  192 (235)
T 3tif_A          118 GEERRKRALECLKMAELEERFANHK-----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN  192 (235)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            45667788999999999875 4664     45799999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++ |+|||++||++ . +.+++|++++|++|+++..|++++.
T Consensus       193 ~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~~~~  232 (235)
T 3tif_A          193 EEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKLRGF  232 (235)
T ss_dssp             HHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEECC--
T ss_pred             HHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcChhhh
Confidence            65 99999999996 4 5689999999999999999987764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.91  E-value=8.3e-24  Score=219.88  Aligned_cols=116  Identities=27%  Similarity=0.449  Sum_probs=106.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++..|+.+     .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus       118 ~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  192 (355)
T 1z47_A          118 PKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH  192 (355)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            34566788999999999999888855     5699999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ |.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus       193 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~  234 (355)
T 1z47_A          193 DEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY  234 (355)
T ss_dssp             HHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            64 99999999995 7899999999999999999999998864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.91  E-value=6.8e-24  Score=221.25  Aligned_cols=116  Identities=26%  Similarity=0.448  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++..++.+     .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus       106 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  180 (362)
T 2it1_A          106 PREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ  180 (362)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence            34566788999999999999888855     5699999999999999999999999999999999999999999999997


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ |.|+|++||++ .++..++|+|++|++|+++..|+++++.
T Consensus       181 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~  222 (362)
T 2it1_A          181 KELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY  222 (362)
T ss_dssp             HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            64 99999999995 7899999999999999999999999874

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.90  E-value=9.7e-24  Score=219.70  Aligned_cols=116  Identities=28%  Similarity=0.435  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++..|+.+     .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus       113 ~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  187 (353)
T 1oxx_K          113 SKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ  187 (353)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence            34566788999999999999988855     5699999999999999999999999999999999999999999999997


Q ss_pred             h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + .|.|+|++||++ .++..++|++++|++|+++..|+++++.
T Consensus       188 ~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~  229 (353)
T 1oxx_K          188 SRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY  229 (353)
T ss_dssp             HHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            6 499999999995 7899999999999999999999998864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.90  E-value=1.6e-23  Score=219.38  Aligned_cols=117  Identities=27%  Similarity=0.461  Sum_probs=107.0

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++..++.+     .+|||||||||+|||+|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus       112 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  186 (372)
T 1g29_1          112 PRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ  186 (372)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHH
Confidence            34566788999999999999888855     5699999999999999999999999999999999999999999999997


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ++ |.|+|++||++ .++..++|++++|++|+++..|+++++.+
T Consensus       187 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~  229 (372)
T 1g29_1          187 RQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (372)
T ss_dssp             HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence            64 99999999995 78999999999999999999999988753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.90  E-value=7.8e-24  Score=212.46  Aligned_cols=113  Identities=35%  Similarity=0.464  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHcCCc--ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            6 KRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         6 ~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      .+++++++++.+||.  +..++.+     .+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus       113 ~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~  187 (266)
T 2yz2_A          113 PVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL  187 (266)
T ss_dssp             SHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc
Confidence            356789999999998  8888755     569999999999999999999999999999999999999999999999877


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |+|||+++|++ .++..++|++++|++|+++..|+++++.+
T Consensus       188 g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  227 (266)
T 2yz2_A          188 GKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLE  227 (266)
T ss_dssp             TCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999996 67888999999999999999999887653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.90  E-value=8.9e-24  Score=208.89  Aligned_cols=113  Identities=22%  Similarity=0.363  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +.+++++++++.++ |.+..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus       114 ~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~  188 (240)
T 1ji0_A          114 GIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE  188 (240)
T ss_dssp             HHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence            44567888999995 988777754     569999999999999999999999999999999999999999999999878


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |+|||+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       189 g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~  227 (240)
T 1ji0_A          189 GTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             TCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            99999999995 6788999999999999999999887653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.90  E-value=1.1e-23  Score=220.35  Aligned_cols=117  Identities=24%  Similarity=0.404  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.+||++..++.+     .+|||||||||+|||+|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus       114 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  188 (372)
T 1v43_A          114 PKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ  188 (372)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence            34566788999999999999888854     5799999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ++ |.|+|++||++ .++..++|++++|++|+++..|+++++.+
T Consensus       189 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~  231 (372)
T 1v43_A          189 QKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL  231 (372)
T ss_dssp             HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            64 99999999995 78999999999999999999999998753

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.90  E-value=1.1e-23  Score=219.35  Aligned_cols=115  Identities=23%  Similarity=0.465  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++.+++++++++.+||++..++.+     .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.++
T Consensus       108 ~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  182 (359)
T 2yyz_A          108 DEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE  182 (359)
T ss_dssp             HHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence            344678999999999999888855     569999999999999999999999999999999999999999999999764


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                       |.|+|++||++ .++..++|++++|++|+++..|+++++.+
T Consensus       183 ~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~  223 (359)
T 2yyz_A          183 LGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD  223 (359)
T ss_dssp             HCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence             99999999995 78999999999999999999999998753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.90  E-value=2.1e-23  Score=207.85  Aligned_cols=111  Identities=31%  Similarity=0.416  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~-   83 (546)
                      +.+++++++++.+||.+..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ 
T Consensus       104 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~  178 (253)
T 2nq2_C          104 HDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ  178 (253)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            44577899999999998888855     469999999999999999999999999999999999999999999999876 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |+|||+++|++ .++.+++|++++|++|+ ++.|+++++
T Consensus       179 g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          179 NMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             CCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             CCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            99999999995 77889999999999999 999988765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.90  E-value=1.1e-23  Score=212.85  Aligned_cols=112  Identities=31%  Similarity=0.430  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +.+++++++++.+||++..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|
T Consensus       137 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g  211 (279)
T 2ihy_A          137 EIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY  211 (279)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC
Confidence            345678999999999988888654     699999999999999999999999999999999999999999999998779


Q ss_pred             CEE--EEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           85 RTV--IASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        85 ~tv--i~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      +||  |+++|++ .++.+++|++++|++|++++.|+++++
T Consensus       212 ~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~  250 (279)
T 2ihy_A          212 PTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDI  250 (279)
T ss_dssp             TTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred             CEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999  9999995 678899999999999999999998765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.90  E-value=2.8e-23  Score=206.54  Aligned_cols=111  Identities=22%  Similarity=0.299  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHcCC-cccccccccCcccCC-CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            5 EKRTLVERTIIEMGL-QDCADTVIGNWHLRG-ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL-~~~~~~~ig~~~~~~-lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +.+++++++++.+|| .+..|+.+     .. |||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus       117 ~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~  191 (250)
T 2d2e_A          117 EFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG  191 (250)
T ss_dssp             HHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence            345678899999999 57787755     45 999999999999999999999999999999999999999999999987


Q ss_pred             CCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEecChhH
Q 009033           83 DGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSA  121 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~~v~~G~~~~  121 (546)
                      +|+|||+++|++ .++..+ +|++++|++|+++..|+++.
T Consensus       192 ~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (250)
T 2d2e_A          192 PNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGGPEL  230 (250)
T ss_dssp             TTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred             cCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence            899999999996 567777 59999999999999999873

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.90  E-value=2.9e-23  Score=208.39  Aligned_cols=115  Identities=27%  Similarity=0.359  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            5 EKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +.+++++++++.+||. +..++.++    .+|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++
T Consensus       138 ~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~  213 (267)
T 2zu0_C          138 DFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG  213 (267)
T ss_dssp             HHHHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            4456789999999996 56776442    149999999999999999999999999999999999999999999999877


Q ss_pred             CCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |+|||+++|++ .++..+ +|++++|++|++++.|+++++..
T Consensus       214 g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  254 (267)
T 2zu0_C          214 KRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLVKQ  254 (267)
T ss_dssp             SCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred             CCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence            99999999996 566665 89999999999999999887643

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.89  E-value=5.2e-23  Score=204.43  Aligned_cols=110  Identities=30%  Similarity=0.436  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC-------eEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR-------LLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~-------il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      +++++++++.+||++..++.+     ..||||||||++||++|+.+|+       +|+|||||+|||+.++..+.+.|++
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~  178 (249)
T 2qi9_C          104 TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA  178 (249)
T ss_dssp             HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence            467889999999998888755     4699999999999999999999       9999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      ++++|+|||+++|++ .++.+++|++++|++|+++..|+++++
T Consensus       179 l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~  220 (249)
T 2qi9_C          179 LSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEV  220 (249)
T ss_dssp             HHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred             HHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            987799999999995 678899999999999999999988765

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.89  E-value=5.5e-23  Score=213.43  Aligned_cols=110  Identities=28%  Similarity=0.434  Sum_probs=102.7

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRT   86 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~t   86 (546)
                      ++++++++.+||++..|+.+     .+|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+ .|.|
T Consensus       106 ~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t  180 (348)
T 3d31_A          106 KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT  180 (348)
T ss_dssp             HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence            67899999999999988855     56999999999999999999999999999999999999999999999976 5999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +|++||++ .++..++|++++|++|+++..|+++++.
T Consensus       181 ii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~  216 (348)
T 3d31_A          181 VLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF  216 (348)
T ss_dssp             EEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             EEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999995 7899999999999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.87  E-value=3.7e-22  Score=198.10  Aligned_cols=112  Identities=30%  Similarity=0.473  Sum_probs=97.0

Q ss_pred             HHHHHHHHHcCCccccccc-------ccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQDCADTV-------IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~-------ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++++++++.+++.+..++.       ++ ..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus       113 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~  191 (247)
T 2ff7_A          113 EKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI  191 (247)
T ss_dssp             HHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            4577888888887765543       22 245789999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      + +|+|||+++|++ ..+ +.+|++++|++|++++.|+++++.
T Consensus       192 ~-~g~tviivtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~l~  231 (247)
T 2ff7_A          192 C-KGRTVIIIAHRL-STV-KNADRIIVMEKGKIVEQGKHKELL  231 (247)
T ss_dssp             H-TTSEEEEECSSG-GGG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred             c-CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence            5 599999999996 455 459999999999999999988753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.87  E-value=4.7e-22  Score=199.96  Aligned_cols=109  Identities=27%  Similarity=0.317  Sum_probs=94.7

Q ss_pred             HHHHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033            9 LVERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR   85 (546)
Q Consensus         9 ~v~~~l~~l--gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~   85 (546)
                      .+++.++.+  ||++..++.     +..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++++ +|+
T Consensus       134 ~~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~  208 (271)
T 2ixe_A          134 GAHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASR  208 (271)
T ss_dssp             TCHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTS
T ss_pred             hHHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence            345677777  676666664     457999999999999999999999999999999999999999999999975 589


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |||+++|++ ..+. .+|++++|++|+++..|+++++.+
T Consensus       209 tviivtHd~-~~~~-~~d~v~~l~~G~i~~~g~~~~l~~  245 (271)
T 2ixe_A          209 TVLLITQQL-SLAE-RAHHILFLKEGSVCEQGTHLQLME  245 (271)
T ss_dssp             EEEEECSCH-HHHT-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEEEeCCH-HHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999995 5554 599999999999999999987643

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.87  E-value=5.1e-22  Score=198.82  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      +++++++++.+||+ +..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++   
T Consensus       105 ~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---  176 (263)
T 2pjz_A          105 RDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---  176 (263)
T ss_dssp             HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---
T ss_pred             HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---
Confidence            45688999999998 8887755     46999999999999999999999999999999999999999999999865   


Q ss_pred             EEEEEecCCchHHHhhcC-eEEEEeCCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFD-RLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D-~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |||+++|++ .++.+++| ++++|++|++++.|+++++.
T Consensus       177 tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~  214 (263)
T 2pjz_A          177 EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL  214 (263)
T ss_dssp             EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred             cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence            999999996 67888999 99999999999999998764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.87  E-value=1.1e-21  Score=200.15  Aligned_cols=113  Identities=32%  Similarity=0.449  Sum_probs=96.3

Q ss_pred             HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.++++++..++.+.       .++.+|. ....||||||||++|||+|+.+|+||+|||||+|||+.+...+++.|+++
T Consensus       158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l  236 (306)
T 3nh6_A          158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV  236 (306)
T ss_dssp             HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            445666677666543       3555654 55679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+ ++|+|+++|++ +.+.. +|+|++|++|+++..|+++++.+
T Consensus       237 ~~-~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~~G~~~el~~  277 (306)
T 3nh6_A          237 CA-NRTTIVVAHRL-STVVN-ADQILVIKDGCIVERGRHEALLS  277 (306)
T ss_dssp             HT-TSEEEEECCSH-HHHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred             cC-CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence            65 68999999996 55655 99999999999999999998754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.86  E-value=4.6e-22  Score=196.91  Aligned_cols=113  Identities=27%  Similarity=0.368  Sum_probs=98.5

Q ss_pred             HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQDCADTVIG------NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig------~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++++++.+++.+..++...      +..+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus       107 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~  186 (243)
T 1mv5_A          107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM  186 (243)
T ss_dssp             HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence            457888999999877665321      12457899999999999999999999999999999999999999999999997


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       +|+|||+++|++ ..+ ..+|++++|++|+++..|+++++.
T Consensus       187 -~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~  225 (243)
T 1mv5_A          187 -KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHNELV  225 (243)
T ss_dssp             -TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHHHHH
T ss_pred             -CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence             699999999996 455 569999999999999999988764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.86  E-value=1e-21  Score=196.38  Aligned_cols=112  Identities=32%  Similarity=0.475  Sum_probs=95.4

Q ss_pred             HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++.++++.++|.+.       .|+.++. .+..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++
T Consensus       123 ~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l  201 (260)
T 2ghi_A          123 EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL  201 (260)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence            345667777776543       3444443 56789999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ |+|||+++|++ ..+ +.+|++++|++|+++..|+++++.
T Consensus       202 ~~-~~tviivtH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~  241 (260)
T 2ghi_A          202 RK-NRTLIIIAHRL-STI-SSAESIILLNKGKIVEKGTHKDLL  241 (260)
T ss_dssp             TT-TSEEEEECSSG-GGS-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred             cC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence            65 89999999996 445 569999999999999999988764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.84  E-value=2.6e-21  Score=203.66  Aligned_cols=115  Identities=20%  Similarity=0.273  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDCADTVIGN------WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~------~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++++++.++|.+..++..+.      +....|||||||||+|||+|+.+|++|+|||||||||+.++.++.+.|+++
T Consensus       122 ~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~  201 (390)
T 3gd7_A          122 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA  201 (390)
T ss_dssp             HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            46688999999999887775431      122349999999999999999999999999999999999999999999987


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      . .|+|+|+++|++  +....+|+|++|++|+++..|+++++.+
T Consensus       202 ~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~  242 (390)
T 3gd7_A          202 F-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH  242 (390)
T ss_dssp             T-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred             h-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            5 479999999995  3557799999999999999999998753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.83  E-value=1.9e-20  Score=207.62  Aligned_cols=114  Identities=31%  Similarity=0.404  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      +++++++++..++.+.       .||.+|+ ...+||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|++
T Consensus       447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b60_A          447 REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  525 (582)
T ss_dssp             HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            3567888888888654       3566664 5678999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +.+ |+|+|+++|++ +.+ +.+|+|++|++|+++..|+++++.+
T Consensus       526 ~~~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~  567 (582)
T 3b60_A          526 LQK-NRTSLVIAHRL-STI-EQADEIVVVEDGIIVERGTHSELLA  567 (582)
T ss_dssp             HHT-TSEEEEECSCG-GGT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhC-CCEEEEEeccH-HHH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence            975 89999999997 444 5799999999999999999988654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.83  E-value=1.7e-20  Score=207.98  Aligned_cols=113  Identities=30%  Similarity=0.457  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDCA-------DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      +++++++++.+|+++..       ||.+|+ ....||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|++
T Consensus       447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b5x_A          447 REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            45678888888887543       455664 4578999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +.+ |+|+|+++|++ +.+ +.+|++++|++|+++..|+++++.
T Consensus       526 ~~~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~  566 (582)
T 3b5x_A          526 LQK-NKTVLVIAHRL-STI-EQADEILVVDEGEIIERGRHADLL  566 (582)
T ss_pred             HcC-CCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence            965 89999999996 444 579999999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.83  E-value=1.5e-20  Score=184.52  Aligned_cols=110  Identities=23%  Similarity=0.319  Sum_probs=89.5

Q ss_pred             HHHHHHHcCCccccc-------ccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHH
Q 009033           10 VERTIIEMGLQDCAD-------TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLS   81 (546)
Q Consensus        10 v~~~l~~lgL~~~~~-------~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~~l~   81 (546)
                      +++.++.+++.+..+       +.++. ....||||||||++||++|+.+|++|+|||||+|||+.++..+++. ++++.
T Consensus       100 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~  178 (229)
T 2pze_A          100 YRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM  178 (229)
T ss_dssp             HHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT
T ss_pred             HHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh
Confidence            344556666654332       23332 4578999999999999999999999999999999999999999997 46665


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       +|+|||+++|++ .++ ..+|++++|++|+++..|+++++.
T Consensus       179 -~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~  217 (229)
T 2pze_A          179 -ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ  217 (229)
T ss_dssp             -TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred             -CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence             489999999995 555 469999999999999999988754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.83  E-value=1.6e-20  Score=185.16  Aligned_cols=90  Identities=23%  Similarity=0.379  Sum_probs=81.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---CLSRDGRTVIASIHQPSSEVFELFDRLYL  107 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~---~l~~~g~tvi~~~H~p~~~i~~~~D~v~l  107 (546)
                      .+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+   +++ +|+|||+++|++ ..+ ..+|++++
T Consensus       124 ~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~-~~~-~~~d~v~~  200 (237)
T 2cbz_A          124 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSM-SYL-PQVDVIIV  200 (237)
T ss_dssp             TSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCS-TTG-GGSSEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecCh-HHH-HhCCEEEE
Confidence            567899999999999999999999999999999999999999999995   443 589999999997 444 57999999


Q ss_pred             EeCCeEEEecChhHHH
Q 009033          108 LSGGKTVYFGETSAAF  123 (546)
Q Consensus       108 L~~G~~v~~G~~~~~~  123 (546)
                      |++|+++..|+++++.
T Consensus       201 l~~G~i~~~g~~~~~~  216 (237)
T 2cbz_A          201 MSGGKISEMGSYQELL  216 (237)
T ss_dssp             EETTEEEEEECHHHHH
T ss_pred             EeCCEEEEeCCHHHHh
Confidence            9999999999988764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.82  E-value=5e-20  Score=204.36  Aligned_cols=112  Identities=25%  Similarity=0.374  Sum_probs=94.9

Q ss_pred             HHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            9 LVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         9 ~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      .+.+.++..++.+       -.|+.+|. ...+||||||||++|||+|+.+|+||+||||||+||+.+..++.+.|+++.
T Consensus       448 ~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~  526 (587)
T 3qf4_A          448 EIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT  526 (587)
T ss_dssp             HHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC
Confidence            3444555555433       35666664 567899999999999999999999999999999999999999999999985


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                       +|+|+|+++|++ +.+ ..+|+|++|++|+++..|+++++.+
T Consensus       527 -~~~tvi~itH~l-~~~-~~~d~i~vl~~G~i~~~g~~~el~~  566 (587)
T 3qf4_A          527 -KGCTTFIITQKI-PTA-LLADKILVLHEGKVAGFGTHKELLE  566 (587)
T ss_dssp             -TTCEEEEEESCH-HHH-TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred             -CCCEEEEEecCh-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence             589999999996 444 6899999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2e-20  Score=207.50  Aligned_cols=111  Identities=21%  Similarity=0.340  Sum_probs=101.8

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRT   86 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~t   86 (546)
                      +.++++++.++|.+.+|+.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|.|
T Consensus       446 ~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~t  520 (608)
T 3j16_B          446 QFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT  520 (608)
T ss_dssp             HHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence            45778999999998888855     56999999999999999999999999999999999999999999999974 6999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC--CeEEEecChhHHHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE  124 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~  124 (546)
                      ||+++|++ .++..++|||++|++  |+++..|+++++.+
T Consensus       521 viivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~  559 (608)
T 3j16_B          521 AFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT  559 (608)
T ss_dssp             EEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred             EEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence            99999994 789999999999986  99999999988764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.81  E-value=7.9e-20  Score=202.49  Aligned_cols=113  Identities=29%  Similarity=0.403  Sum_probs=96.2

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++.+.++..++.+       -.||.+|+ ...+||||||||++|||+|+.+|++|+|||||||||+.+...+.+.|+++
T Consensus       445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~  523 (578)
T 4a82_A          445 EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL  523 (578)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            44566666666543       34666764 55689999999999999999999999999999999999999999999998


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+ |+|+|+++|++ +.+ +.+|+|++|++|+++..|+++++.+
T Consensus       524 ~~-~~t~i~itH~l-~~~-~~~d~i~~l~~G~i~~~g~~~el~~  564 (578)
T 4a82_A          524 SK-DRTTLIVAHRL-STI-THADKIVVIENGHIVETGTHRELIA  564 (578)
T ss_dssp             TT-TSEEEEECSSG-GGT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cC-CCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence            64 78999999997 444 5699999999999999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.81  E-value=8.2e-21  Score=184.37  Aligned_cols=96  Identities=19%  Similarity=0.290  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      +++++++++.+||++. ++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|
T Consensus       112 ~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t  185 (214)
T 1sgw_A          112 KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI  185 (214)
T ss_dssp             HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred             HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence            4678899999999877 6644     569999999999999999999999999999999999999999999999877899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEe
Q 009033           87 VIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      ||+++|++ .++..++|+++++.
T Consensus       186 iiivtHd~-~~~~~~~d~v~~~~  207 (214)
T 1sgw_A          186 VIISSREE-LSYCDVNENLHKYS  207 (214)
T ss_dssp             EEEEESSC-CTTSSEEEEGGGGB
T ss_pred             EEEEeCCH-HHHHHhCCEEEEeC
Confidence            99999996 67888888887553

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.81  E-value=4.9e-20  Score=204.91  Aligned_cols=112  Identities=22%  Similarity=0.348  Sum_probs=94.3

Q ss_pred             HHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            9 LVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         9 ~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +++++++..++.+       -.||.+|+ ....||||||||++|||+|+.+|++|+||||||+||+.+..++.+.|+++.
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~  538 (598)
T 3qf4_B          460 EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM  538 (598)
T ss_dssp             HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence            3555566555543       33555553 446799999999999999999999999999999999999999999999996


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                       +|+|+|+++|+++ .+ +.+|+|++|++|+++..|+++++.+
T Consensus       539 -~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~  578 (598)
T 3qf4_B          539 -EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ  578 (598)
T ss_dssp             -TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred             -CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence             5899999999974 45 4599999999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.81  E-value=9.1e-20  Score=202.37  Aligned_cols=112  Identities=26%  Similarity=0.354  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~   85 (546)
                      .++++++++.+||.+.+++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++ +|.
T Consensus       449 ~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~  523 (607)
T 3bk7_A          449 NFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK  523 (607)
T ss_dssp             HHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence            3567889999999988888654     6999999999999999999999999999999999999999999999974 699


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeC--CeEEEecChhHHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE  124 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~  124 (546)
                      |||+++|++ .++..++|++++|++  |+++..|+++++.+
T Consensus       524 tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          524 TALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             EEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             EEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence            999999994 789999999999986  88889999988765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.81  E-value=6e-20  Score=201.51  Aligned_cols=112  Identities=27%  Similarity=0.356  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~   85 (546)
                      +++++++++.+||.+..++.+     ..|||||||||.||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|.
T Consensus       379 ~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~  453 (538)
T 1yqt_A          379 NFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK  453 (538)
T ss_dssp             HHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence            356788899999988887755     46999999999999999999999999999999999999999999999974 699


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeC--CeEEEecChhHHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE  124 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~  124 (546)
                      |||+++|+ ..++..+||+|++|++  |+++..|+++++.+
T Consensus       454 tvi~vsHd-~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          454 TALVVEHD-VLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             EEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             EEEEEeCC-HHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence            99999999 4789999999999986  88889999988765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.80  E-value=1.7e-19  Score=182.93  Aligned_cols=110  Identities=23%  Similarity=0.319  Sum_probs=88.2

Q ss_pred             HHHHHHHcCCccccc-------ccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHH
Q 009033           10 VERTIIEMGLQDCAD-------TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLS   81 (546)
Q Consensus        10 v~~~l~~lgL~~~~~-------~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~~l~   81 (546)
                      +++.++.+++.+..+       +.++. ....||||||||++||++|+.+|++|+|||||+|||+.++..+++. ++++.
T Consensus       129 ~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~  207 (290)
T 2bbs_A          129 YRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM  207 (290)
T ss_dssp             HHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT
T ss_pred             HHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh
Confidence            345566666654322       22332 3568999999999999999999999999999999999999999997 45664


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                       +|+|||+++|++ ..+ ..+|++++|++|+++..|+++++.
T Consensus       208 -~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~  246 (290)
T 2bbs_A          208 -ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ  246 (290)
T ss_dssp             -TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred             -CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence             489999999996 555 569999999999999999998764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.80  E-value=2.9e-19  Score=201.33  Aligned_cols=109  Identities=29%  Similarity=0.380  Sum_probs=95.6

Q ss_pred             HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            8 TLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         8 ~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +++.+.++.+||.. ..++.     +..|||||||||+||++|+.+|   +||+|||||+|||+.++.++++.|++++++
T Consensus       521 ~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~  595 (670)
T 3ux8_A          521 KRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN  595 (670)
T ss_dssp             HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCchhhccCC-----chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence            45667888899864 34554     4569999999999999999987   499999999999999999999999999988


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~  123 (546)
                      |.|||+++|++ ..+ +.+|+|++|      ++|++++.|+++++.
T Consensus       596 g~tvi~vtHd~-~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~  639 (670)
T 3ux8_A          596 GDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA  639 (670)
T ss_dssp             TCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred             CCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence            99999999996 444 679999999      899999999998863

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.79  E-value=1.9e-19  Score=197.30  Aligned_cols=110  Identities=21%  Similarity=0.289  Sum_probs=97.4

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRT   86 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~t   86 (546)
                      ..++++++.+||.+..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|.|
T Consensus       364 ~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~t  438 (538)
T 3ozx_A          364 WFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV  438 (538)
T ss_dssp             HHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence            45788899999998888855     46999999999999999999999999999999999999999999999986 6899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC--CeEEEecChhHHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAF  123 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~  123 (546)
                      ||+++|++ .++..+||||++|++  |.....|++.++.
T Consensus       439 vi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~  476 (538)
T 3ozx_A          439 TFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK  476 (538)
T ss_dssp             EEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred             EEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence            99999994 789999999999986  6666677765543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.78  E-value=3.8e-19  Score=200.34  Aligned_cols=104  Identities=28%  Similarity=0.369  Sum_probs=93.6

Q ss_pred             HHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 009033           13 TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA   89 (546)
Q Consensus        13 ~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~--il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~   89 (546)
                      +++.+||.+. .|+.+     ..|||||||||+||++|+++|+  +|+|||||+|||+.++.++++.|++++++|.|||+
T Consensus       185 ~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~  259 (670)
T 3ux8_A          185 FLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV  259 (670)
T ss_dssp             HHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence            4888999764 57755     4699999999999999999998  99999999999999999999999999988999999


Q ss_pred             EecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033           90 SIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF  123 (546)
Q Consensus        90 ~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~  123 (546)
                      ++|++ .. ...+|++++|      ++|++++.|+++++.
T Consensus       260 vtHd~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~  297 (670)
T 3ux8_A          260 VEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM  297 (670)
T ss_dssp             ECCCH-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred             EeCCH-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence            99995 44 4569999999      899999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.78  E-value=3.1e-19  Score=198.12  Aligned_cols=99  Identities=29%  Similarity=0.450  Sum_probs=91.4

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      ++++++++.+||++..|+.++     .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.||
T Consensus       207 ~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv  281 (607)
T 3bk7_A          207 GKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV  281 (607)
T ss_dssp             SCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence            457889999999998888664     699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCe
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      |+++|++ .++..++|+|++|++|.
T Consensus       282 IivsHdl-~~~~~~adri~vl~~~~  305 (607)
T 3bk7_A          282 LVVEHDL-AVLDYLSDVIHVVYGEP  305 (607)
T ss_dssp             EEECSCH-HHHHHHCSEEEEEESCT
T ss_pred             EEEecCh-HHHHhhCCEEEEECCCc
Confidence            9999994 78889999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.78  E-value=2.5e-19  Score=196.56  Aligned_cols=99  Identities=28%  Similarity=0.437  Sum_probs=91.3

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      ++++++++.+||++..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.||
T Consensus       137 ~~~~~~l~~lgl~~~~~~~~-----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv  211 (538)
T 1yqt_A          137 GKLEEVVKALELENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSV  211 (538)
T ss_dssp             SCHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHcCCChhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence            46788999999998888865     4699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCe
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      |+++|+ ..++.+++|+|++|++|.
T Consensus       212 i~vsHd-~~~~~~~~dri~vl~~~~  235 (538)
T 1yqt_A          212 LVVEHD-LAVLDYLSDIIHVVYGEP  235 (538)
T ss_dssp             EEECSC-HHHHHHHCSEEEEEEEET
T ss_pred             EEEeCC-HHHHHHhCCEEEEEcCcc
Confidence            999999 478999999999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.78  E-value=4.7e-19  Score=196.45  Aligned_cols=103  Identities=28%  Similarity=0.342  Sum_probs=95.4

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      ++++++++.+||++..|+.+     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.||
T Consensus       200 ~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tv  274 (608)
T 3j16_B          200 EDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV  274 (608)
T ss_dssp             HHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEE
T ss_pred             HHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            67889999999999988866     4699999999999999999999999999999999999999999999999889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTVYF  116 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~~  116 (546)
                      |+++|+ ..++..++|+|++|++|..+|.
T Consensus       275 i~vtHd-l~~~~~~~drv~vl~~~~~~~~  302 (608)
T 3j16_B          275 ICVEHD-LSVLDYLSDFVCIIYGVPSVYG  302 (608)
T ss_dssp             EEECSC-HHHHHHHCSEEEEEESCTTTEE
T ss_pred             EEEeCC-HHHHHHhCCEEEEEeCCccccc
Confidence            999999 4889999999999998776553

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.77  E-value=3.6e-19  Score=195.07  Aligned_cols=101  Identities=21%  Similarity=0.275  Sum_probs=92.1

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      ++++++++.+||.+..|+.++     .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ |+||
T Consensus       117 ~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~ti  190 (538)
T 3ozx_A          117 GKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV  190 (538)
T ss_dssp             SCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEE
T ss_pred             HHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEE
Confidence            457889999999998888664     6999999999999999999999999999999999999999999999976 9999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEE
Q 009033           88 IASIHQPSSEVFELFDRLYLLSGGKTVY  115 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~G~~v~  115 (546)
                      |+++|+. .++..++|+|++|++|..++
T Consensus       191 i~vsHdl-~~~~~~~d~i~vl~~~~~~~  217 (538)
T 3ozx_A          191 IVVDHDL-IVLDYLTDLIHIIYGESSVY  217 (538)
T ss_dssp             EEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred             EEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence            9999995 78999999999998765443

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.77  E-value=1.6e-18  Score=199.19  Aligned_cols=110  Identities=28%  Similarity=0.344  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      .+++.++|+.+||... .++     .+.+|||||||||.||++|+.+|   +||+|||||+|||+.+..++++.|+++++
T Consensus       782 ~~~~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~  856 (916)
T 3pih_A          782 IKRTLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD  856 (916)
T ss_dssp             HHHHHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence            3567789999999653 233     44579999999999999999875   79999999999999999999999999998


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~  123 (546)
                      +|.|||+++|++ +.+ ..+|+|++|      ++|++++.|+++++.
T Consensus       857 ~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~  901 (916)
T 3pih_A          857 RGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA  901 (916)
T ss_dssp             TTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred             cCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence            899999999995 444 669999999      899999999999875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.77  E-value=1.7e-18  Score=199.18  Aligned_cols=109  Identities=25%  Similarity=0.382  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009033            7 RTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~   85 (546)
                      +++++++++.+||. +..++.++     .||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++   .|.
T Consensus       525 ~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~  596 (986)
T 2iw3_A          525 KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGI  596 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCS
T ss_pred             HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCC
Confidence            46788999999994 67777664     5999999999999999999999999999999999999999999998   589


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EecChhHHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE  124 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v-~~G~~~~~~~  124 (546)
                      |||+++|+ ..++.+++|++++|++|+++ +.|++++..+
T Consensus       597 tvIivSHd-l~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          597 TSITISHD-SVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             EEEEECSC-HHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             EEEEEECC-HHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            99999999 57889999999999999997 7899987654

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.76  E-value=2.6e-18  Score=157.15  Aligned_cols=83  Identities=28%  Similarity=0.314  Sum_probs=74.2

Q ss_pred             CcccCCCCHHHHHHHHHH------HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033           29 NWHLRGISGGERRRVSIA------LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        29 ~~~~~~lSgGer~Rvsia------~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~  102 (546)
                      +..+..||||||||++||      ++|+.+|++++|||||+|||+.++..+.+.|+++.++|.|||+++|++  ++.+.+
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~  129 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA  129 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence            345678999999999886      899999999999999999999999999999999987899999999995  577899


Q ss_pred             CeEEEE--eCCeE
Q 009033          103 DRLYLL--SGGKT  113 (546)
Q Consensus       103 D~v~lL--~~G~~  113 (546)
                      |++++|  .+|..
T Consensus       130 d~ii~l~~~~g~s  142 (148)
T 1f2t_B          130 DHVIRISLENGSS  142 (148)
T ss_dssp             SEEEEEEEETTEE
T ss_pred             CEEEEEEcCCCeE
Confidence            999999  45643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.76  E-value=1.2e-18  Score=209.13  Aligned_cols=114  Identities=26%  Similarity=0.415  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++.+.++++..++.       +-.||.||+ ....||||||||++|||+|+++|+||+||||||+||+.+...|.+.|++
T Consensus      1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A         1184 MAQVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            35567777777664       446889986 3456999999999999999999999999999999999999999999988


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +. +|+|+|+++|.++.  ...+|+|++|++|+++++|+++++.+
T Consensus      1263 ~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A         1263 AR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp             TS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred             Hc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence            75 47999999999743  57799999999999999999998765

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.75  E-value=3e-18  Score=195.29  Aligned_cols=110  Identities=30%  Similarity=0.340  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            7 RTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~---P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      .+++.++++.+||... .++.     +..|||||||||.||++|+.+   |+||+|||||+|||+.+..++++.|+++++
T Consensus       707 ~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~  781 (842)
T 2vf7_A          707 IFRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD  781 (842)
T ss_dssp             HHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence            3567899999999863 4554     457999999999999999996   799999999999999999999999999998


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~  123 (546)
                      +|.|||+++|++ .++ +.+|+|++|      ++|++++.|+++++.
T Consensus       782 ~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~  826 (842)
T 2vf7_A          782 AGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA  826 (842)
T ss_dssp             TTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred             CCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence            999999999995 666 889999999      799999999998753

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.75  E-value=3.8e-18  Score=196.04  Aligned_cols=108  Identities=27%  Similarity=0.392  Sum_probs=95.4

Q ss_pred             HHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033           10 VERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus        10 v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~--il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      ..+.+..+||... .|+.+     .+|||||||||.||++|+++|+  +|+|||||+|||+....++++.|++++++|.|
T Consensus       444 ~~~~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~T  518 (916)
T 3pih_A          444 RLEFLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNT  518 (916)
T ss_dssp             HHHHHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCE
T ss_pred             HHHHHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCE
Confidence            4567888999764 56654     4699999999999999999887  99999999999999999999999999988999


Q ss_pred             EEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHHH
Q 009033           87 VIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE  124 (546)
Q Consensus        87 vi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~  124 (546)
                      ||+++|++ .. ...+|+|++|      ++|++++.|+++++.+
T Consensus       519 vivVtHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~  560 (916)
T 3pih_A          519 VIVVEHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELLK  560 (916)
T ss_dssp             EEEECCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred             EEEEeCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence            99999995 44 4569999999      8999999999998653

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.75  E-value=5.5e-18  Score=193.77  Aligned_cols=109  Identities=29%  Similarity=0.381  Sum_probs=96.7

Q ss_pred             HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            8 TLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         8 ~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P---~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      +++.++++.+||.. ..++.+     ..|||||||||.||++|+.+|   +||+|||||+|||+.++.++++.|++++++
T Consensus       823 ~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~  897 (972)
T 2r6f_A          823 KRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN  897 (972)
T ss_dssp             HHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence            34578999999986 566644     569999999999999999865   999999999999999999999999999989


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF  123 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~  123 (546)
                      |.|||+++|++ .++ +.+|+|++|      ++|++++.|+++++.
T Consensus       898 G~TVIvisHdl-~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~  941 (972)
T 2r6f_A          898 GDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA  941 (972)
T ss_dssp             TCEEEEECCCH-HHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred             CCEEEEEcCCH-HHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence            99999999995 554 789999999      789999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.74  E-value=5.7e-18  Score=202.81  Aligned_cols=101  Identities=31%  Similarity=0.497  Sum_probs=89.6

Q ss_pred             cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009033           20 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF   99 (546)
Q Consensus        20 ~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~   99 (546)
                      .+-.||.+|+ ....||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++ .+|+|+|+++|++ +.+ 
T Consensus      1158 ~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l-~~i- 1233 (1284)
T 3g5u_A         1158 PDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRL-STI- 1233 (1284)
T ss_dssp             TTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCT-TGG-
T ss_pred             ccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCH-HHH-
Confidence            3456777875 45679999999999999999999999999999999999999999999885 4589999999997 455 


Q ss_pred             hhcCeEEEEeCCeEEEecChhHHHH
Q 009033          100 ELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus       100 ~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ..+|||++|++|+++..|+++++.+
T Consensus      1234 ~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1234 QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp             GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred             HcCCEEEEEECCEEEEECCHHHHHh
Confidence            5699999999999999999998754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.73  E-value=5.7e-18  Score=193.59  Aligned_cols=111  Identities=29%  Similarity=0.378  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +..+++ +.++.+||... .|+.++     +||||||||+.||++|..+|  ++|+|||||+|||+.....+.+.|++|.
T Consensus       480 ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr  553 (972)
T 2r6f_A          480 EIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR  553 (972)
T ss_dssp             HHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred             HHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence            445555 35899999864 677554     69999999999999999985  9999999999999999999999999999


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~  123 (546)
                      +.|.|||+++|++ .+ ...+|+|++|      ++|++++.|+++++.
T Consensus       554 ~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~  599 (972)
T 2r6f_A          554 DLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM  599 (972)
T ss_dssp             TTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred             hCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence            8999999999995 44 5679999999      799999999998753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.73  E-value=7.1e-18  Score=202.43  Aligned_cols=114  Identities=28%  Similarity=0.404  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHcCC-------cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 009033            7 RTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC   79 (546)
Q Consensus         7 ~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~   79 (546)
                      ++++.++++..++       .+-.||.||+. ...||||||||++|||+++.+|+||+||||||+||+.+...+.+.|++
T Consensus       521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~  599 (1321)
T 4f4c_A          521 REEMVAACKMANAEKFIKTLPNGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK  599 (1321)
T ss_dssp             HHHHHHHHHHTTCHHHHHHSTTTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchhHHHcCCCCCccEecCC-CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence            3456666666554       45578999974 456999999999999999999999999999999999999999999998


Q ss_pred             HHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           80 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        80 l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +.+ |+|+|+++|+++  ..+.+|+|++|++|+++..|+.+++.+
T Consensus       600 ~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~  641 (1321)
T 4f4c_A          600 AAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA  641 (1321)
T ss_dssp             HHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred             HhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence            864 799999999974  468899999999999999999998764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.73  E-value=6.4e-18  Score=176.88  Aligned_cols=84  Identities=33%  Similarity=0.467  Sum_probs=77.2

Q ss_pred             cccCCCCHHHHHHHHHHHHHH------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 009033           30 WHLRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD  103 (546)
Q Consensus        30 ~~~~~lSgGer~Rvsia~~l~------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D  103 (546)
                      ..+.+|||||||||+||++|+      .+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++ . ..+.+|
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~-~~~~~d  352 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-E-FSEAFD  352 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-H-HHTTCS
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-H-HHHhCC
Confidence            356689999999999999999      79999999999999999999999999999998899999999996 4 478899


Q ss_pred             eEEEEeCCeEEE
Q 009033          104 RLYLLSGGKTVY  115 (546)
Q Consensus       104 ~v~lL~~G~~v~  115 (546)
                      ++++|++|+++.
T Consensus       353 ~~~~l~~G~i~~  364 (365)
T 3qf7_A          353 RKLRITGGVVVN  364 (365)
T ss_dssp             CEEEEETTEEC-
T ss_pred             EEEEEECCEEEe
Confidence            999999999874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.72  E-value=1.2e-17  Score=199.87  Aligned_cols=100  Identities=32%  Similarity=0.475  Sum_probs=89.0

Q ss_pred             ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh
Q 009033           21 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE  100 (546)
Q Consensus        21 ~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~  100 (546)
                      +-.||.+|. ...+||||||||++|||+|+.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|++ +.+ .
T Consensus       514 ~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~i-~  589 (1284)
T 3g5u_A          514 HQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRL-STV-R  589 (1284)
T ss_dssp             TGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCH-HHH-T
T ss_pred             ccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-H
Confidence            346777875 456799999999999999999999999999999999999999999998875 489999999995 555 4


Q ss_pred             hcCeEEEEeCCeEEEecChhHHHH
Q 009033          101 LFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus       101 ~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+|+|++|++|++++.|+++++.+
T Consensus       590 ~~d~i~vl~~G~i~~~g~~~~l~~  613 (1284)
T 3g5u_A          590 NADVIAGFDGGVIVEQGNHDELMR  613 (1284)
T ss_dssp             TCSEEEECSSSCCCCEECHHHHHH
T ss_pred             cCCEEEEEECCEEEEECCHHHHHh
Confidence            599999999999999999998754

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.71  E-value=1.8e-17  Score=188.97  Aligned_cols=111  Identities=24%  Similarity=0.368  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +..++++ .++.+||.+. .++.+     ..|||||||||.||++|..+|  .+|+|||||+|||+.....+.+.|++|.
T Consensus       355 ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~  428 (842)
T 2vf7_A          355 DLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK  428 (842)
T ss_dssp             HHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence            4556666 6889999865 67655     469999999999999999999  5999999999999999999999999999


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecChhHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~  123 (546)
                      +.|.|||+++|++ . +.+.+|+|++|      ++|++++.|+++++.
T Consensus       429 ~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~  474 (842)
T 2vf7_A          429 RGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK  474 (842)
T ss_dssp             TTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred             HcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence            8999999999995 4 66789999999      799999999988753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.70  E-value=1.2e-17  Score=192.11  Aligned_cols=103  Identities=27%  Similarity=0.427  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHcCCcc-c-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009033            7 RTLVERTIIEMGLQD-C-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG   84 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~-~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g   84 (546)
                      +++++++++.+||.+ . .++.+     .+|||||||||+||++|+.+|+||+|||||+|||+.+...+.+.|+++   |
T Consensus       877 ~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g  948 (986)
T 2iw3_A          877 RKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---E  948 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S
T ss_pred             HHHHHHHHHHcCCCchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---C
Confidence            356889999999974 3 46644     469999999999999999999999999999999999999999988765   5


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 009033           85 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE  118 (546)
Q Consensus        85 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~  118 (546)
                      .|||+++|++ .++.+++|++++|++|+++..|+
T Consensus       949 ~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          949 GGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             SEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred             CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence            7999999994 77889999999999999988774

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.66  E-value=4.3e-16  Score=165.08  Aligned_cols=80  Identities=30%  Similarity=0.427  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE----
Q 009033           35 ISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL----  108 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL----  108 (546)
                      +|||||||+.||++|+.+|  ++|+|||||+|||+.++..+.+.|++++ +|.|||++||+|  ++.+.+|++++|    
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~  372 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV  372 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence            6999999999999999999  9999999999999999999999999998 589999999996  456889999999    


Q ss_pred             eCCeEEEec
Q 009033          109 SGGKTVYFG  117 (546)
Q Consensus       109 ~~G~~v~~G  117 (546)
                      .+|+++...
T Consensus       373 ~~G~~~~~~  381 (415)
T 4aby_A          373 EDGRTVSHV  381 (415)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCceEEEE
Confidence            999987653

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.55  E-value=3.4e-14  Score=133.15  Aligned_cols=90  Identities=20%  Similarity=0.263  Sum_probs=73.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEE
Q 009033           31 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY  106 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~----~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~  106 (546)
                      .+..||||||||++||++++.    .|++++|||||+|||+.+...+.+.|++++++ .++|+++|++  .+.+.+|+++
T Consensus        61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~  137 (173)
T 3kta_B           61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKII  137 (173)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEE
Confidence            356799999999999999975    46999999999999999999999999999764 6889999984  5678999999


Q ss_pred             EEe--CCeE-EEecChhHHH
Q 009033          107 LLS--GGKT-VYFGETSAAF  123 (546)
Q Consensus       107 lL~--~G~~-v~~G~~~~~~  123 (546)
                      .+.  +|.. +...+.++..
T Consensus       138 ~v~~~~g~s~~~~~~~~~~~  157 (173)
T 3kta_B          138 GVSMRDGVSKVVSLSLEKAM  157 (173)
T ss_dssp             EEEEETTEEEEEECCHHHHH
T ss_pred             EEEecCCEEEEEEEEcHHHH
Confidence            764  6643 3344444433

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.54  E-value=7.1e-15  Score=160.64  Aligned_cols=79  Identities=27%  Similarity=0.375  Sum_probs=71.9

Q ss_pred             ccCCC-CHHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009033           31 HLRGI-SGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL  107 (546)
Q Consensus        31 ~~~~l-SgGer~Rvsia~~l~~~P--~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l  107 (546)
                      .+..| ||||||||+||++|+.+|  ++|+|||||+|||+.++..+.+.|+++++ |.|||++||+| . +...+|++++
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~-~-~~~~~d~~~~  469 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA-Q-IAARAHHHYK  469 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH-H-HHHHSSEEEE
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-H-HHHhCCEEEE
Confidence            35567 999999999999999999  99999999999999999999999999987 89999999996 3 5567999999


Q ss_pred             EeCCe
Q 009033          108 LSGGK  112 (546)
Q Consensus       108 L~~G~  112 (546)
                      |.+|.
T Consensus       470 ~~~~~  474 (517)
T 4ad8_A          470 VEKQV  474 (517)
T ss_dssp             EECCE
T ss_pred             Eeccc
Confidence            96653

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.54  E-value=8.5e-15  Score=151.57  Aligned_cols=77  Identities=30%  Similarity=0.332  Sum_probs=70.0

Q ss_pred             ccCCCCHHHHH------HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCe
Q 009033           31 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR  104 (546)
Q Consensus        31 ~~~~lSgGer~------Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~  104 (546)
                      .+..|||||||      |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||+++|++  ++.+.+|+
T Consensus       245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~  322 (339)
T 3qkt_A          245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH  322 (339)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred             ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence            45679999999      56777888889999999999999999999999999999988889999999994  57899999


Q ss_pred             EEEEe
Q 009033          105 LYLLS  109 (546)
Q Consensus       105 v~lL~  109 (546)
                      ++.|.
T Consensus       323 ~~~l~  327 (339)
T 3qkt_A          323 VIRIS  327 (339)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.54  E-value=1.8e-14  Score=148.04  Aligned_cols=88  Identities=28%  Similarity=0.258  Sum_probs=73.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE-
Q 009033           31 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL-  105 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v-  105 (546)
                      .+..||||||||++||++|+    .+|++|+|||||++||+.++..+.+.|++++ +|.|||+++|++  ++.+.+|++ 
T Consensus       216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~  292 (322)
T 1e69_A          216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH  292 (322)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred             chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence            34579999999999999997    5789999999999999999999999999985 578999999995  478899987 


Q ss_pred             -EEEeCCeE-EEecChhH
Q 009033          106 -YLLSGGKT-VYFGETSA  121 (546)
Q Consensus       106 -~lL~~G~~-v~~G~~~~  121 (546)
                       +++.+|.. +.....++
T Consensus       293 ~v~~~~g~s~~~~~~~~~  310 (322)
T 1e69_A          293 GVTMVNGVSAIVPVEVEK  310 (322)
T ss_dssp             EEEESSSCEEEEECCC--
T ss_pred             EEEEeCCEEEEEEEEcch
Confidence             77777754 44455554

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.52  E-value=1.1e-14  Score=151.69  Aligned_cols=86  Identities=16%  Similarity=0.192  Sum_probs=77.2

Q ss_pred             CcccC-CCCHHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009033           29 NWHLR-GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV   98 (546)
Q Consensus        29 ~~~~~-~lSgGer~Rvsia~~l~---------~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i   98 (546)
                      +..++ .+|||||||++||++|+         .+|+||+|||||++||+..+..+++.|+++.   .|+|+++|. . + 
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~-  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P-  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence            44556 79999999999999999         8999999999999999999999999999875   699999994 3 3 


Q ss_pred             HhhcCeEEEEeCCeEEEecChhHH
Q 009033           99 FELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        99 ~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                        .+|+++++++|+++..|+++++
T Consensus       333 --~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 --GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             --TCSEEEEEETTEEEECCCTTTS
T ss_pred             --cCCEEEEEECCEEEecCCHHHH
Confidence              8999999999999999998764

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.44  E-value=3.4e-13  Score=141.26  Aligned_cols=100  Identities=21%  Similarity=0.279  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccC----cccCCCCHHHHHHH------HHHHHHHhC-CCeEEEeCCCCCCCHH
Q 009033            7 RTLVERTIIEMGLQDC-------ADTVIGN----WHLRGISGGERRRV------SIALEILMR-PRLLFLDEPTSGLDSA   68 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~-------~~~~ig~----~~~~~lSgGer~Rv------sia~~l~~~-P~il~LDEPtsgLD~~   68 (546)
                      .+.+++.++.+++.+.       .+..+.+    ..+..+|||||||+      ++|++++.+ |++|+|||||+|||+.
T Consensus       242 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~  321 (371)
T 3auy_A          242 QKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN  321 (371)
T ss_dssp             HHHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHH
T ss_pred             HHHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHH
Confidence            3456677888877551       1111211    34567999999988      557888899 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           69 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        69 ~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      .+..+.+.|+++.+ +.+||+++|+|  ++...+|++++++
T Consensus       322 ~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d~~~~l~  359 (371)
T 3auy_A          322 RRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVADVIINVK  359 (371)
T ss_dssp             HHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred             HHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCCEEEEEE
Confidence            99999999999854 46899999996  3678999999997

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.41  E-value=3.4e-14  Score=152.72  Aligned_cols=101  Identities=7%  Similarity=0.082  Sum_probs=81.3

Q ss_pred             HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHH--HHhCCCe----EEEeC-CCCCCCHHHHHHHHHHHHHHHh
Q 009033           10 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE--ILMRPRL----LFLDE-PTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus        10 v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~--l~~~P~i----l~LDE-PtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      ++++++.+||++..+       +.+|||||||||+||++  |+.+|++    |+||| ||+|||+. ...+.+.+++   
T Consensus       218 ~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---  286 (460)
T 2npi_A          218 KQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---  286 (460)
T ss_dssp             BCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---
T ss_pred             HHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---
Confidence            344556667766554       34699999999999999  9999999    99999 99999999 4444444444   


Q ss_pred             CCCEEEEEecCCch-----HHHhhcCe-----EEEEe-CCeEEEecChhHH
Q 009033           83 DGRTVIASIHQPSS-----EVFELFDR-----LYLLS-GGKTVYFGETSAA  122 (546)
Q Consensus        83 ~g~tvi~~~H~p~~-----~i~~~~D~-----v~lL~-~G~~v~~G~~~~~  122 (546)
                      .|.|+|+++|+...     ++.+++|+     |++|+ +|+++ .|++++.
T Consensus       287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~  336 (460)
T 2npi_A          287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK  336 (460)
T ss_dssp             TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred             hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence            37899999999641     66789999     99999 99999 9998765

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.37  E-value=5.4e-13  Score=125.50  Aligned_cols=78  Identities=17%  Similarity=0.077  Sum_probs=65.8

Q ss_pred             ccCCCCHHHHHHHHHHHH-----HHhCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec--CCchHHHhh
Q 009033           31 HLRGISGGERRRVSIALE-----ILMRPRLLFLDE--PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH--QPSSEVFEL  101 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~-----l~~~P~il~LDE--PtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H--~p~~~i~~~  101 (546)
                      ++..||||||||++||++     ++.+|++++|||  ||++||+.....+.+.+++   .+.|+|+++|  +....+.++
T Consensus        73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i  149 (178)
T 1ye8_A           73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEI  149 (178)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHH
T ss_pred             cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHH
Confidence            455799999999999996     999999999999  9999999999999888876   5677888886  335778888


Q ss_pred             cCeEEEEeCCeEEE
Q 009033          102 FDRLYLLSGGKTVY  115 (546)
Q Consensus       102 ~D~v~lL~~G~~v~  115 (546)
                      +|+    .+|+++.
T Consensus       150 ~~r----~~~~i~~  159 (178)
T 1ye8_A          150 RRL----PGAVLIE  159 (178)
T ss_dssp             HTC----TTCEEEE
T ss_pred             Hhc----CCcEEEE
Confidence            888    5566654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.34  E-value=2.8e-13  Score=126.21  Aligned_cols=65  Identities=14%  Similarity=0.205  Sum_probs=59.1

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009033           34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA----------------AAFFVTQTLRCLSRDGRTVIASIHQPSSE   97 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~----------------~~~~v~~~L~~l~~~g~tvi~~~H~p~~~   97 (546)
                      ..|||||||++||++++.+|++|+|||||+|||+.                ...++.+.|++++++|.|+|+++|++ .+
T Consensus        83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~  161 (171)
T 4gp7_A           83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EE  161 (171)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HH
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HH
Confidence            35999999999999999999999999999999999                66899999999987899999999995 55


Q ss_pred             HH
Q 009033           98 VF   99 (546)
Q Consensus        98 i~   99 (546)
                      +.
T Consensus       162 ~~  163 (171)
T 4gp7_A          162 VE  163 (171)
T ss_dssp             HH
T ss_pred             hh
Confidence            53

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.33  E-value=2.1e-12  Score=137.74  Aligned_cols=75  Identities=23%  Similarity=0.236  Sum_probs=69.0

Q ss_pred             CCCCHHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009033           33 RGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL  108 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~----~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL  108 (546)
                      ..||||||||++||++|+    .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++  +....+|+++.+
T Consensus       332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~  409 (430)
T 1w1w_A          332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV  409 (430)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence            459999999999999999    57999999999999999999999999999977788999999994  567889999999


Q ss_pred             e
Q 009033          109 S  109 (546)
Q Consensus       109 ~  109 (546)
                      .
T Consensus       410 ~  410 (430)
T 1w1w_A          410 Y  410 (430)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.14  E-value=2.4e-11  Score=132.90  Aligned_cols=81  Identities=14%  Similarity=0.062  Sum_probs=74.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCCEEEEEecCCc---------h
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-----AAFFVTQTLRCLSRDGRTVIASIHQPS---------S   96 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~-----~~~~v~~~L~~l~~~g~tvi~~~H~p~---------~   96 (546)
                      .+..|||||+||+.+|+++..+|++|++| ||+|||..     .+..+.++++.+++.|.|||+++|++.         .
T Consensus       350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~  428 (525)
T 1tf7_A          350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS  428 (525)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc
Confidence            45679999999999999999999999999 99999999     999999999999989999999999961         5


Q ss_pred             HHHhhcCeEEEEeCCe
Q 009033           97 EVFELFDRLYLLSGGK  112 (546)
Q Consensus        97 ~i~~~~D~v~lL~~G~  112 (546)
                      .+.+++|+|++|++|+
T Consensus       429 ~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          429 HISTITDTIILLQYVE  444 (525)
T ss_dssp             CCTTTCSEEEEEEEEE
T ss_pred             ccceeeeEEEEEEEEE
Confidence            6778999999999887

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.12  E-value=2.2e-12  Score=124.33  Aligned_cols=51  Identities=14%  Similarity=0.079  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009033           38 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP   94 (546)
Q Consensus        38 Ger~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p   94 (546)
                      |||||++||++|+.+|++|+|||||+|    ++..+.+.|+++ ++|+||| ++|++
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~  158 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDI  158 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC-
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCH
Confidence            999999999999999999999999999    889999999999 6789999 99996

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.93  E-value=7.2e-10  Score=128.03  Aligned_cols=90  Identities=14%  Similarity=0.151  Sum_probs=76.1

Q ss_pred             ccCCCCHHHHHHHHHHHHH--HhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEE
Q 009033           31 HLRGISGGERRRVSIALEI--LMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLY  106 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l--~~~P~il~LDEPtsgLD~~~~~~v-~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~  106 (546)
                      ..+++|+|++++..+|+.+  +++|++++|||||+|||+.....+ ...++.+++ .|.|+|++||++  ++.+++|++.
T Consensus       718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~  795 (934)
T 3thx_A          718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIP  795 (934)
T ss_dssp             -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCT
T ss_pred             HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccc
Confidence            4568999999999999999  999999999999999999999888 677788886 599999999994  6778999999


Q ss_pred             EEeCCeEEEecChhHH
Q 009033          107 LLSGGKTVYFGETSAA  122 (546)
Q Consensus       107 lL~~G~~v~~G~~~~~  122 (546)
                      .+.+|++.+.++.+++
T Consensus       796 ~v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          796 TVNNLHVTALTTEETL  811 (934)
T ss_dssp             TEEEEEEEEEEETTEE
T ss_pred             eeEeeEEEEEecCCcE
Confidence            9999999988876653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.91  E-value=5.6e-11  Score=125.80  Aligned_cols=92  Identities=18%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHH--HHHHHHHHHHHHh----------CCCeEEEeCCCCCCCHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGG--ERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQ   75 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgG--er~Rvsia~~l~~----------~P~il~LDEPtsgLD~~~~~~v~~   75 (546)
                      .++++.++.++|.+.... +     . +|||  ||||+.||++|+.          +|++++|||||+|||+.++.++++
T Consensus       135 ~~~~~~L~~~~L~~~~~~-~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~  207 (413)
T 1tq4_A          135 FPPDTYLEKMKFYEYDFF-I-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ  207 (413)
T ss_dssp             CCHHHHHHHTTGGGCSEE-E-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred             HHHHHHHHHcCCCccCCe-E-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence            357888999998765322 1     2 8999  9999999999999          999999999999999999999999


Q ss_pred             HHHHHH-----hCC----CEEEEEecCCch-HHHhhcCeEE
Q 009033           76 TLRCLS-----RDG----RTVIASIHQPSS-EVFELFDRLY  106 (546)
Q Consensus        76 ~L~~l~-----~~g----~tvi~~~H~p~~-~i~~~~D~v~  106 (546)
                      .++++.     +.|    .+|++++|+... .+.+++|++.
T Consensus       208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence            999985     333    678899998532 2777777663

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.90  E-value=2.1e-09  Score=108.40  Aligned_cols=80  Identities=11%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             CCCCHHH-HHHHHHHHHHHhCCCeEEEeCCCC---C---CCH-HHHHHHHHHHHHHHh-CCCEEEEEecCCc-h------
Q 009033           33 RGISGGE-RRRVSIALEILMRPRLLFLDEPTS---G---LDS-AAAFFVTQTLRCLSR-DGRTVIASIHQPS-S------   96 (546)
Q Consensus        33 ~~lSgGe-r~Rvsia~~l~~~P~il~LDEPts---g---LD~-~~~~~v~~~L~~l~~-~g~tvi~~~H~p~-~------   96 (546)
                      ..+|.+| +||+. |+++..+|+++++||||+   +   +|. ....++++.|+++++ .|+|||+++|+.. .      
T Consensus       128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~  206 (296)
T 1cr0_A          128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE  206 (296)
T ss_dssp             CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred             CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence            3588998 67777 999999999999999999   5   565 677889999999986 4999999999951 3      


Q ss_pred             --------------HHHhhcCeEEEEeCCeE
Q 009033           97 --------------EVFELFDRLYLLSGGKT  113 (546)
Q Consensus        97 --------------~i~~~~D~v~lL~~G~~  113 (546)
                                    .+.+.+|+|++|.+|+.
T Consensus       207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             --------CCC---CHHHHCSEEEEEEEC--
T ss_pred             cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence                          68889999999998874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.65  E-value=2.1e-10  Score=109.78  Aligned_cols=61  Identities=10%  Similarity=-0.036  Sum_probs=54.9

Q ss_pred             HHHhCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           48 EILMRPRLLFLDEPTSGL----DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        48 ~l~~~P~il~LDEPtsgL----D~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      +|+.+|++++|||||+|+    |+..+.++.+.++++++ .|.|+|+++|+ ..++.+++|+|++|.
T Consensus       137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd-l~~~~~~~d~i~~l~  202 (207)
T 1znw_A          137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR-LESACAELVSLLVGT  202 (207)
T ss_dssp             EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS-HHHHHHHHHHHHC--
T ss_pred             EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC-HHHHHHHHHHHHHhc
Confidence            889999999999999998    78899999999999985 58999999999 489999999999984

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.63  E-value=3.5e-08  Score=115.32  Aligned_cols=84  Identities=14%  Similarity=0.049  Sum_probs=66.7

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033           34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA-FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~-~~v~~~L~~l~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G  111 (546)
                      .+|+|++ +++++++++++|++++|||||+|+|+... ..+...|+.++++ |.++|++||++ +.+...+|++.++ +|
T Consensus       851 tf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g  927 (1022)
T 2o8b_B          851 TFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LG  927 (1022)
T ss_dssp             HHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EE
T ss_pred             hhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cC
Confidence            4566655 59999999999999999999999999985 5578899999876 99999999995 6777789999887 48


Q ss_pred             eEE--EecChh
Q 009033          112 KTV--YFGETS  120 (546)
Q Consensus       112 ~~v--~~G~~~  120 (546)
                      ++.  +.|+++
T Consensus       928 ~~~~~~~~~~~  938 (1022)
T 2o8b_B          928 HMACMVENECE  938 (1022)
T ss_dssp             EEEEC------
T ss_pred             eEEEEEecCcc
Confidence            877  456544

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.63  E-value=2.2e-08  Score=115.46  Aligned_cols=81  Identities=17%  Similarity=0.147  Sum_probs=65.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEE-E
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYL-L  108 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~-~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~l-L  108 (546)
                      ..++|+|++|++.|+++ +++|++++|||||+|||+.....+. ..++.+++ .|.|+|++||++  ++.+++|+.-- +
T Consensus       733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v  809 (918)
T 3thx_B          733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQV  809 (918)
T ss_dssp             -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTE
T ss_pred             HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccce
Confidence            35689999999999988 8999999999999999999999998 77888875 699999999995  45677766431 3


Q ss_pred             eCCeEEE
Q 009033          109 SGGKTVY  115 (546)
Q Consensus       109 ~~G~~v~  115 (546)
                      .++++.+
T Consensus       810 ~n~~~~~  816 (918)
T 3thx_B          810 GNYHMGF  816 (918)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4444443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.61  E-value=4.9e-09  Score=107.93  Aligned_cols=68  Identities=22%  Similarity=0.221  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           37 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        37 gGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      |||+||++||++|..+|++|++||||+       .++.+.|+.+...+.|+|+|+|.++  +.+.+||+++|.+|+.
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS  292 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence            899999999999999999999999998       2456778877655568999999974  7788999999988763

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.58  E-value=8.6e-08  Score=91.86  Aligned_cols=79  Identities=14%  Similarity=0.005  Sum_probs=66.1

Q ss_pred             CCCHHHHHHHHHHHHHHhCCC--eEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------hHHHhh
Q 009033           34 GISGGERRRVSIALEILMRPR--LLFLDEPTSGL--DSAAAFFVTQTLRCLSR-DGRTVIASIHQPS-------SEVFEL  101 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~~P~--il~LDEPtsgL--D~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~-------~~i~~~  101 (546)
                      ..|.+|.++...+.....+|+  ++++||||+++  |+....++++.|+++++ .|.|||+++|+..       ..+.++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~  182 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV  182 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence            358999988888777778999  99999999887  99999999999999975 6999999999962       348889


Q ss_pred             cCeEEEEeCCe
Q 009033          102 FDRLYLLSGGK  112 (546)
Q Consensus       102 ~D~v~lL~~G~  112 (546)
                      +|++++|...+
T Consensus       183 ~d~vi~l~~~~  193 (235)
T 2w0m_A          183 ADGIIRFRRMI  193 (235)
T ss_dssp             CSEEEEEEEEE
T ss_pred             eeEEEEEEEEe
Confidence            99999998653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.56  E-value=5.9e-10  Score=113.36  Aligned_cols=87  Identities=20%  Similarity=0.157  Sum_probs=65.6

Q ss_pred             HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 009033           10 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA   89 (546)
Q Consensus        10 v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~   89 (546)
                      +.+.++.+ |.+..|   |    ..||||||||   ||+|+.+|+||+    |++||+.+...+..              
T Consensus       184 ~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------  234 (305)
T 2v9p_A          184 CWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------  234 (305)
T ss_dssp             HHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------
T ss_pred             HHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------
Confidence            44556653 433333   3    4699999999   999999999999    99999999888752              


Q ss_pred             EecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHHHHH
Q 009033           90 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ  128 (546)
Q Consensus        90 ~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~  128 (546)
                      .+|++.  ..+.+|+| +|++|++++.|+++++...|..
T Consensus       235 ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~  270 (305)
T 2v9p_A          235 LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR  270 (305)
T ss_dssp             GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred             HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence            178853  46889999 9999999999999988555544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.53  E-value=1e-07  Score=95.16  Aligned_cols=77  Identities=12%  Similarity=0.029  Sum_probs=61.3

Q ss_pred             HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-C
Q 009033           10 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS--GLDSAAA---FFVTQTLRCLSR-D   83 (546)
Q Consensus        10 v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPts--gLD~~~~---~~v~~~L~~l~~-~   83 (546)
                      ++++++.+++.+..+.     .+..+|+||++++   ++++.+|+++++||||+  ++|....   .++++.|+++++ .
T Consensus        99 ~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~  170 (279)
T 1nlf_A           99 RQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT  170 (279)
T ss_dssp             HHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence            3445677777666554     3456999998875   57888999999999999  9998544   888999999974 6


Q ss_pred             CCEEEEEecCC
Q 009033           84 GRTVIASIHQP   94 (546)
Q Consensus        84 g~tvi~~~H~p   94 (546)
                      |+|||+++|+.
T Consensus       171 g~tvi~i~H~~  181 (279)
T 1nlf_A          171 GCSIVFLHHAS  181 (279)
T ss_dssp             CCEEEEEEEC-
T ss_pred             CCEEEEEecCC
Confidence            99999999985

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.30  E-value=1.2e-06  Score=83.42  Aligned_cols=78  Identities=15%  Similarity=-0.003  Sum_probs=61.7

Q ss_pred             CCCHHH--HHHHHHHHHHHhC-CCeEEEeCCCCCCCHH--------HHHHHHHHHHHHHh-CCCEEEEEecCCch-----
Q 009033           34 GISGGE--RRRVSIALEILMR-PRLLFLDEPTSGLDSA--------AAFFVTQTLRCLSR-DGRTVIASIHQPSS-----   96 (546)
Q Consensus        34 ~lSgGe--r~Rvsia~~l~~~-P~il~LDEPtsgLD~~--------~~~~v~~~L~~l~~-~g~tvi~~~H~p~~-----   96 (546)
                      ..++++  ++++..+++++.+ |+++++||||+++|+.        ...++++.|+++++ .|.|||+++|....     
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~  163 (220)
T 2cvh_A           84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM  163 (220)
T ss_dssp             CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred             ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence            355554  5678888899886 9999999999999973        33556777888876 48999999998541     


Q ss_pred             -------HHHhhcCeEEEEeCC
Q 009033           97 -------EVFELFDRLYLLSGG  111 (546)
Q Consensus        97 -------~i~~~~D~v~lL~~G  111 (546)
                             .+.+.+|.+++|+..
T Consensus       164 ~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          164 TKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             CCSCCCHHHHHTSSEEEEEEEC
T ss_pred             cccCCCcceeecCcEEEEEEEe
Confidence                   577899999999754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.27  E-value=1.5e-07  Score=102.78  Aligned_cols=72  Identities=18%  Similarity=0.076  Sum_probs=59.1

Q ss_pred             HHHHHHHHH-HhCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH--------HHhhcCeEE
Q 009033           41 RRVSIALEI-LMRPRLLFLDEPTS-----GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE--------VFELFDRLY  106 (546)
Q Consensus        41 ~Rvsia~~l-~~~P~il~LDEPts-----gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~--------i~~~~D~v~  106 (546)
                      +.-.+..+| -.+|++++|||||+     +||+..+.++.+.++++++.|+|||+++|++...        +..++|+|+
T Consensus       126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi  205 (525)
T 1tf7_A          126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV  205 (525)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred             HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence            344555566 36899999999998     5799999999999999988899999999997432        345699999


Q ss_pred             EEeCCe
Q 009033          107 LLSGGK  112 (546)
Q Consensus       107 lL~~G~  112 (546)
                      +|++|+
T Consensus       206 ~L~~~~  211 (525)
T 1tf7_A          206 ILRNVL  211 (525)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.26  E-value=1.9e-07  Score=94.79  Aligned_cols=72  Identities=21%  Similarity=0.204  Sum_probs=56.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc--------hHHHh
Q 009033           32 LRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS--------SEVFE  100 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~--il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~--------~~i~~  100 (546)
                      +.+||   |||+.||++++.+|+  +|+|| ||+|||+.+.      ++++.+ .|.|+|++||...        +.+..
T Consensus       202 ~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~  271 (302)
T 3b9q_A          202 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEE  271 (302)
T ss_dssp             HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHH
T ss_pred             HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHH
Confidence            34588   999999999999999  99999 9999998855      355654 5899999999421        23445


Q ss_pred             hcCeEEEEeCCeE
Q 009033          101 LFDRLYLLSGGKT  113 (546)
Q Consensus       101 ~~D~v~lL~~G~~  113 (546)
                      ..+.|..+..|+.
T Consensus       272 ~~~pi~~i~~Ge~  284 (302)
T 3b9q_A          272 LGIPVKFIGVGEA  284 (302)
T ss_dssp             HCCCEEEEECSSS
T ss_pred             HCCCEEEEeCCCC
Confidence            5678888888875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.23  E-value=7.9e-07  Score=85.15  Aligned_cols=103  Identities=18%  Similarity=0.132  Sum_probs=67.3

Q ss_pred             HHHHHHHHHcCCcccccccccC-cccCCCCHHHH-HHHHHHHHHHh-------CCCeEEEeCCCCCCCHH-------H--
Q 009033            8 TLVERTIIEMGLQDCADTVIGN-WHLRGISGGER-RRVSIALEILM-------RPRLLFLDEPTSGLDSA-------A--   69 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~-~~~~~lSgGer-~Rvsia~~l~~-------~P~il~LDEPtsgLD~~-------~--   69 (546)
                      +++..+.+..++..-  +...+ ......+++++ +.+..+.+++.       +|+++++||||+++|+.       .  
T Consensus        74 ~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r  151 (231)
T 4a74_A           74 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER  151 (231)
T ss_dssp             HHHHHHHHHTTSCHH--HHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH
T ss_pred             HHHHHHHHHcCCCHH--HHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH
Confidence            345666777776421  11111 01223455554 44677777777       99999999999999983       1  


Q ss_pred             ---HHHHHHHHHHHHh-CCCEEEEEecCCc---hHHHhhcCeEEEEeCCe
Q 009033           70 ---AFFVTQTLRCLSR-DGRTVIASIHQPS---SEVFELFDRLYLLSGGK  112 (546)
Q Consensus        70 ---~~~v~~~L~~l~~-~g~tvi~~~H~p~---~~i~~~~D~v~lL~~G~  112 (546)
                         ..++++.|+++++ .|+|||+++|...   ..+.+.+|+++.|++|+
T Consensus       152 ~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          152 QQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             HHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence               2378888888875 5999999999531   23788899999998754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.22  E-value=5.1e-07  Score=102.44  Aligned_cols=66  Identities=27%  Similarity=0.182  Sum_probs=55.0

Q ss_pred             cCCCCHHHHHHHHHHHHH--HhCCCeEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033           32 LRGISGGERRRVSIALEI--LMRPRLLFLDEP---TSGLDSAAA-FFVTQTLRCLSRDGRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l--~~~P~il~LDEP---tsgLD~~~~-~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~  102 (546)
                      ..++|+|+++++.+++++  +++|++++||||   |++||..+. ..+++.|++   .|.|+|++||++  +..+++
T Consensus       633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~  704 (765)
T 1ewq_A          633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG  704 (765)
T ss_dssp             --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred             HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence            457899999999999999  999999999999   999998875 578887776   589999999994  444554

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.19  E-value=9.1e-07  Score=91.60  Aligned_cols=82  Identities=18%  Similarity=0.086  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHHHHHH-------hCCCeEEEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCc
Q 009033           36 SGGERRRVSIALEIL-------MRPRLLFLDEPTSGLDSAA------------AFFVTQTLRCLSR-DGRTVIASIHQPS   95 (546)
Q Consensus        36 SgGer~Rvsia~~l~-------~~P~il~LDEPtsgLD~~~------------~~~v~~~L~~l~~-~g~tvi~~~H~p~   95 (546)
                      |+++++++.++++++       .+|+++++||||+++|+..            ..++++.|+++++ .|+|||+++|.. 
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~-  286 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ-  286 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-
Confidence            688999999999999       6899999999999999852            4667777888876 589999999985 


Q ss_pred             hHHHhhcCeEEEEeCCeEEEecC
Q 009033           96 SEVFELFDRLYLLSGGKTVYFGE  118 (546)
Q Consensus        96 ~~i~~~~D~v~lL~~G~~v~~G~  118 (546)
                      .+....++......+|+++.++.
T Consensus       287 ~~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          287 ARPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             ---------------CCCCCTTC
T ss_pred             cccccccCCccccCCcceEeecC
Confidence            45555566667777787776654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.15  E-value=4e-07  Score=94.55  Aligned_cols=72  Identities=21%  Similarity=0.197  Sum_probs=56.5

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC--------chHHHh
Q 009033           32 LRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP--------SSEVFE  100 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~--il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p--------~~~i~~  100 (546)
                      +.+||   |||+.||++++.+|+  +|+|| ||+|||+.+.      ++++.+ .|.|+|++||..        .+.+..
T Consensus       259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~  328 (359)
T 2og2_A          259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEE  328 (359)
T ss_dssp             HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHH
T ss_pred             HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHH
Confidence            34588   999999999999999  99999 9999998865      345554 589999999942        133445


Q ss_pred             hcCeEEEEeCCeE
Q 009033          101 LFDRLYLLSGGKT  113 (546)
Q Consensus       101 ~~D~v~lL~~G~~  113 (546)
                      ..+.|..+..|+.
T Consensus       329 ~~~pI~~ig~Ge~  341 (359)
T 2og2_A          329 LGIPVKFIGVGEA  341 (359)
T ss_dssp             HCCCEEEEECSSS
T ss_pred             hCCCEEEEeCCCC
Confidence            5678888888764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.14  E-value=8.2e-07  Score=101.31  Aligned_cols=82  Identities=11%  Similarity=0.017  Sum_probs=64.7

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033           34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v-~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  111 (546)
                      .+|+|++ ++..+...+++|++++||||++|+|+.....+ ...++.+++ .|.++|++||++  ++.+++|++..+.+|
T Consensus       669 tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~  745 (800)
T 1wb9_A          669 TFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANV  745 (800)
T ss_dssp             -CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEE
T ss_pred             hhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEE
Confidence            4566655 44445567899999999999999999888776 788899987 599999999995  456789988778888


Q ss_pred             eEEEecC
Q 009033          112 KTVYFGE  118 (546)
Q Consensus       112 ~~v~~G~  118 (546)
                      ++.+...
T Consensus       746 ~~~~~~~  752 (800)
T 1wb9_A          746 HLDALEH  752 (800)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            8776543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.09  E-value=1.3e-07  Score=94.62  Aligned_cols=53  Identities=15%  Similarity=0.224  Sum_probs=46.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033           33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ   93 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~   93 (546)
                      ..||||||||+.+||+++.   +++|||||.|||+..    .+.++.+++. .+||+++|.
T Consensus        97 ~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K  149 (270)
T 3sop_A           97 EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAK  149 (270)
T ss_dssp             HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETT
T ss_pred             HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEec
Confidence            4699999999999999875   999999999999987    5666777666 899999987

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.07  E-value=2.7e-07  Score=95.56  Aligned_cols=78  Identities=17%  Similarity=0.181  Sum_probs=68.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCchHHHhhcCe
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDR  104 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~--~g~-----tvi~~~H~p~~~i~~~~D~  104 (546)
                      +..+|+|| ||+++|   +.+|++      |+|||+....++.+.++++.+  +|.     ||++++|+..   ..++|+
T Consensus       169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~  235 (347)
T 2obl_A          169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE  235 (347)
T ss_dssp             HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred             HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence            45699999 899999   688877      999999999999999999985  577     9999999974   577999


Q ss_pred             EEEEeCCeEEEecChhHH
Q 009033          105 LYLLSGGKTVYFGETSAA  122 (546)
Q Consensus       105 v~lL~~G~~v~~G~~~~~  122 (546)
                      +..+.+|+++.+|+.++.
T Consensus       236 v~~i~dG~Ivl~~~l~~~  253 (347)
T 2obl_A          236 VRSILDGHIVLTRELAEE  253 (347)
T ss_dssp             HHHHCSEEEEBCHHHHTT
T ss_pred             eEEeeCcEEEEeCCHHHc
Confidence            999999999999987653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.06  E-value=2.5e-07  Score=98.66  Aligned_cols=78  Identities=17%  Similarity=0.181  Sum_probs=69.1

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCchHHHhhc
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---D-GR-----TVIASIHQPSSEVFELF  102 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~---~-g~-----tvi~~~H~p~~~i~~~~  102 (546)
                      +..+|+|| ||++||   +.+|++      |+|||+....++.+.++++.+   + |.     ||++++|+..   ...+
T Consensus       256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia  322 (438)
T 2dpy_A          256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA  322 (438)
T ss_dssp             HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred             HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence            45689999 999999   889988      999999999999999999976   3 74     9999999975   5789


Q ss_pred             CeEEEEeCCeEEEecChhHH
Q 009033          103 DRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus       103 D~v~lL~~G~~v~~G~~~~~  122 (546)
                      |++++|.+|+++..|++++.
T Consensus       323 d~v~~l~dG~Ivl~~~~~~~  342 (438)
T 2dpy_A          323 DSARAILDGHIVLSRRLAEA  342 (438)
T ss_dssp             HHHHHHSSEEEEECHHHHHT
T ss_pred             ceEEEEeCcEEEEeCCHHHc
Confidence            99999999999999987653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.98  E-value=3.5e-08  Score=95.28  Aligned_cols=49  Identities=12%  Similarity=0.060  Sum_probs=45.0

Q ss_pred             CCCHHHHHHHHH-----HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033           34 GISGGERRRVSI-----ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus        34 ~lSgGer~Rvsi-----a~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      .+|||||||++|     +++++.+|++++|||||+++|..+...+.+.|+++.+
T Consensus       122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~  175 (218)
T 1z6g_A          122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI  175 (218)
T ss_dssp             CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            589999999999     8899999999999999999999999999998887754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.94  E-value=4.5e-06  Score=82.87  Aligned_cols=60  Identities=15%  Similarity=0.267  Sum_probs=50.2

Q ss_pred             HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           42 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        42 Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      |++||++|..+|+++++||||   |+.+...++   +. ++.|.+|++++|++.  +...+|+++.|..
T Consensus        88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~  147 (261)
T 2eyu_A           88 ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP  147 (261)
T ss_dssp             HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence            899999999999999999999   988866544   33 457899999999963  6788999988754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.94  E-value=2.4e-07  Score=94.54  Aligned_cols=55  Identities=13%  Similarity=0.063  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS   67 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~   67 (546)
                      .+.+.+.++.++ .+..++.+     ..+||||+||+++|++++.+|+|||+|||+..+|+
T Consensus       155 ~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~  209 (312)
T 3aez_A          155 RRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG  209 (312)
T ss_dssp             HHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred             HHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence            456778888887 55555544     46999999999999999999999999999999987

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.86  E-value=1.3e-05  Score=75.51  Aligned_cols=74  Identities=12%  Similarity=0.065  Sum_probs=55.8

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHH-HHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009033            9 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT   86 (546)
Q Consensus         9 ~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~R-vsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t   86 (546)
                      .+.+.++..++...   .+++ +...+|+||||| +..+++++.+|+++++|||||++|..+..++++.|.++.++|.|
T Consensus       128 ~~~~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          128 QMIEWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             HHHHHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            34455666666432   1222 334589999999 89999999999999999999999999999999999998876644

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.73  E-value=1e-06  Score=83.19  Aligned_cols=79  Identities=13%  Similarity=0.055  Sum_probs=55.6

Q ss_pred             cCCCCHHHHHHHH-HHH---HHHhCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCEEEE---E-ecCCchHHHhh
Q 009033           32 LRGISGGERRRVS-IAL---EILMRPRLLFLDE--PTSGLDSAAAFFVTQTLRCLSRDGRTVIA---S-IHQPSSEVFEL  101 (546)
Q Consensus        32 ~~~lSgGer~Rvs-ia~---~l~~~P~il~LDE--PtsgLD~~~~~~v~~~L~~l~~~g~tvi~---~-~H~p~~~i~~~  101 (546)
                      ...+|+|||+++. +++   +++.+|++|++||  ||..+|...    ++.|+++.+...++|+   + +|+.+   ..+
T Consensus        81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~~l~~~l~~~~~~ilgti~vsh~~~---~~~  153 (189)
T 2i3b_A           81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQAVRQTLSTPGTIILGTIPVPKGKP---LAL  153 (189)
T ss_dssp             EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HHHHHHHHHCSSCCEEEECCCCCSSC---CTT
T ss_pred             EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HHHHHHHHhCCCcEEEEEeecCCCCc---hHH
Confidence            3468999998884 343   4789999999999  898888865    4455555444445553   2 28752   357


Q ss_pred             cCeEEEEeCCeEEEec
Q 009033          102 FDRLYLLSGGKTVYFG  117 (546)
Q Consensus       102 ~D~v~lL~~G~~v~~G  117 (546)
                      .|+|..+.+|+++...
T Consensus       154 vd~i~~~~~~~i~~~~  169 (189)
T 2i3b_A          154 VEEIRNRKDVKVFNVT  169 (189)
T ss_dssp             HHHHHTTCCSEEEECC
T ss_pred             HHHHeecCCcEEEEeC
Confidence            7888888888887643

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.71  E-value=3.7e-05  Score=71.05  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=44.5

Q ss_pred             HHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009033           48 EILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE   97 (546)
Q Consensus        48 ~l~~~P~il~LDEPts-gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~   97 (546)
                      ..+.+|++|+||||++ ++|+..+..+.+.+....++|+++|+|+|.+..+
T Consensus        96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A           96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred             HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence            4466999999999995 9999999999999999888899999999998654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.66  E-value=9.4e-08  Score=90.99  Aligned_cols=83  Identities=13%  Similarity=0.049  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHH----HHHHHHHHHHHhCCCeEEEeCCCCC-------CCHHHHHHHHH
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGE----RRRVSIALEILMRPRLLFLDEPTSG-------LDSAAAFFVTQ   75 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGe----r~Rvsia~~l~~~P~il~LDEPtsg-------LD~~~~~~v~~   75 (546)
                      .+++.+.++.+++.+..+..     ...+|+||    +||++++++++.+|.++++||||++       ||+....++.+
T Consensus        67 ~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r  141 (211)
T 3asz_A           67 LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR  141 (211)
T ss_dssp             HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence            35567788888887655553     34588986    4688999999999999999999999       99999999999


Q ss_pred             HHHHHH-hCCCEEEEEecCC
Q 009033           76 TLRCLS-RDGRTVIASIHQP   94 (546)
Q Consensus        76 ~L~~l~-~~g~tvi~~~H~p   94 (546)
                      .+++.. +.|+|++.++|+.
T Consensus       142 ~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          142 RLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             HHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHH
Confidence            998864 5799999999974

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.65  E-value=1.4e-05  Score=82.95  Aligned_cols=59  Identities=15%  Similarity=0.255  Sum_probs=48.5

Q ss_pred             HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 009033           44 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG  111 (546)
Q Consensus        44 sia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G  111 (546)
                      +||++|..+|++|++||||   |..+    .+.+.+++..|.||++|+|+++ .+ ..+||++.|..|
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA  246 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence            9999999999999999999   6444    4555556778999999999964 44 889999988654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.49  E-value=0.00018  Score=69.20  Aligned_cols=78  Identities=17%  Similarity=0.153  Sum_probs=50.8

Q ss_pred             CCCHHHHHH-HHHHHHHH--hCCCeEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCchH
Q 009033           34 GISGGERRR-VSIALEIL--MRPRLLFLDEPTSGLDSA-------A-----AFFVTQTLRCLSR-DGRTVIASIHQPSSE   97 (546)
Q Consensus        34 ~lSgGer~R-vsia~~l~--~~P~il~LDEPtsgLD~~-------~-----~~~v~~~L~~l~~-~g~tvi~~~H~p~~~   97 (546)
                      ..++.+... +.-..+++  .+|+++++|||++.+|+.       +     ..++++.|+++++ .|.|||+++|.. .+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~  176 (243)
T 1n0w_A           98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQ  176 (243)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ec
Confidence            356665433 33344444  489999999999999985       3     4566777777776 499999999964 33


Q ss_pred             H-------------------HhhcCeEEEEeCCe
Q 009033           98 V-------------------FELFDRLYLLSGGK  112 (546)
Q Consensus        98 i-------------------~~~~D~v~lL~~G~  112 (546)
                      .                   .+++|.+++|++|+
T Consensus       177 ~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~  210 (243)
T 1n0w_A          177 VDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR  210 (243)
T ss_dssp             --------------------CCTTCEEEEEEECS
T ss_pred             CCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence            2                   23799999998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.38  E-value=7e-06  Score=83.12  Aligned_cols=57  Identities=14%  Similarity=0.160  Sum_probs=46.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPS   95 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPts-gLD~~~~~~v~~~L~~l~~~-g~tvi~~~H~p~   95 (546)
                      +.+++|||||||+.+|++++    ++++||||+ |||+...    +.+++++++ +.++|++.||..
T Consensus       110 ~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          110 YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            45679999999998888775    999999998 5999873    566677653 789999999953

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.33  E-value=9e-07  Score=82.70  Aligned_cols=80  Identities=14%  Similarity=0.207  Sum_probs=61.7

Q ss_pred             CHHHHHHHHHHH------HHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC-CchHHHhhcCeEEEE
Q 009033           36 SGGERRRVSIAL------EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ-PSSEVFELFDRLYLL  108 (546)
Q Consensus        36 SgGer~Rvsia~------~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~-p~~~i~~~~D~v~lL  108 (546)
                      |+|+++++.++.      +++.+|+...+||   |+|+..... .+.++.+.+.+.++|.++|. + +++.+.+|+|+  
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~--  168 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK--  168 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--
Confidence            788888888888      8999999888884   899988888 88888887678899999998 6 67899999999  


Q ss_pred             eCCeEEEecChhHH
Q 009033          109 SGGKTVYFGETSAA  122 (546)
Q Consensus       109 ~~G~~v~~G~~~~~  122 (546)
                      ++|+++..|+++.+
T Consensus       169 ~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          169 TNPRFIFCMAGDPL  182 (189)
T ss_dssp             HCGGGSCC------
T ss_pred             hCCcEEEeecCCch
Confidence            99999999988643

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.20  E-value=0.00015  Score=65.56  Aligned_cols=50  Identities=8%  Similarity=0.208  Sum_probs=40.9

Q ss_pred             HHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCchHH
Q 009033           48 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT-VIASIHQPSSEV   98 (546)
Q Consensus        48 ~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~t-vi~~~H~p~~~i   98 (546)
                      +++.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+..++
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l  129 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQL  129 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTS
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHc
Confidence            4567899999999998 6655588899999999888888 999999765543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.02  E-value=4.8e-05  Score=74.24  Aligned_cols=73  Identities=4%  Similarity=0.066  Sum_probs=49.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHh-hcCeEEEEeC
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSG  110 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~-~~D~v~lL~~  110 (546)
                      +..+|+||+||+.+ ++++.+|+++++|||....|..        +.++  .+.+|++++|+. ..+.+ +.+++   .+
T Consensus       114 ~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~~-~~~~r~~~r~~---~~  178 (245)
T 2jeo_A          114 VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDSD-VRLSRRVLRDV---RR  178 (245)
T ss_dssp             ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECCHH-HHHHHHHHHHT---C-
T ss_pred             cccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECCHH-HHHHHHHHHHH---Hc
Confidence            35699999999988 5778899999999998888763        2222  378999999973 34433 34434   55


Q ss_pred             CeEEEecChhHHHH
Q 009033          111 GKTVYFGETSAAFE  124 (546)
Q Consensus       111 G~~v~~G~~~~~~~  124 (546)
                      |+     +.+++.+
T Consensus       179 G~-----~~e~~~~  187 (245)
T 2jeo_A          179 GR-----DLEQILT  187 (245)
T ss_dssp             -------CHHHHHH
T ss_pred             CC-----CHHHHHH
Confidence            64     4555554

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.90  E-value=0.00092  Score=68.17  Aligned_cols=55  Identities=16%  Similarity=0.178  Sum_probs=41.9

Q ss_pred             HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeE
Q 009033           49 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL  105 (546)
Q Consensus        49 l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v  105 (546)
                      +..+|+++++|||++ ||..++..+.+.|.+..+ +.++|+++|+|..-...+-+|+
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~-~~~~Il~t~~~~~l~~~l~sR~  185 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK-NIRLIMVCDSMSPIIAPIKSQC  185 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT-TEEEEEEESCSCSSCHHHHTTS
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC-CCEEEEEeCCHHHHHHHHHhhc
Confidence            577999999999999 999999999999988753 6899999999754333333443

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.90  E-value=0.0032  Score=67.04  Aligned_cols=79  Identities=16%  Similarity=0.106  Sum_probs=61.4

Q ss_pred             CCCCHHHHHHHHHHHHHH--hCCCeEEEeCCCCCCCH--------HHHHHHHHHHHHHHh-CCCEEEEEec---------
Q 009033           33 RGISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDS--------AAAFFVTQTLRCLSR-DGRTVIASIH---------   92 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~--~~P~il~LDEPtsgLD~--------~~~~~v~~~L~~l~~-~g~tvi~~~H---------   92 (546)
                      .++|++|.+  +.++.++  .+|+++++|+++...++        ....++.+.|+.+++ .|++||+++|         
T Consensus       294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~  371 (454)
T 2r6a_A          294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ  371 (454)
T ss_dssp             TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred             CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence            368999986  5667776  68999999999997742        344678888999986 5899999999         


Q ss_pred             C--Cc-------hHHHhhcCeEEEEeCCeE
Q 009033           93 Q--PS-------SEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        93 ~--p~-------~~i~~~~D~v~lL~~G~~  113 (546)
                      +  |.       ..+.+.+|.|++|..++.
T Consensus       372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence            2  42       157788999999987763

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.74  E-value=0.0017  Score=68.21  Aligned_cols=73  Identities=15%  Similarity=0.093  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHH--hCCCeEEEeCCCCCCCHHHH------------HHHHHHHHHHHh-CCCEEEEEecCCc---------
Q 009033           40 RRRVSIALEIL--MRPRLLFLDEPTSGLDSAAA------------FFVTQTLRCLSR-DGRTVIASIHQPS---------   95 (546)
Q Consensus        40 r~Rvsia~~l~--~~P~il~LDEPtsgLD~~~~------------~~v~~~L~~l~~-~g~tvi~~~H~p~---------   95 (546)
                      .+.+..+..++  .+|+++++||||+.+|+...            .++++.|+++++ .|.|||+++|...         
T Consensus       259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~  338 (400)
T 3lda_A          259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN  338 (400)
T ss_dssp             HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred             HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence            34444444443  46999999999999996433            678888999986 4999999999821         


Q ss_pred             ---------hHHHhhcCeEEEEeCCe
Q 009033           96 ---------SEVFELFDRLYLLSGGK  112 (546)
Q Consensus        96 ---------~~i~~~~D~v~lL~~G~  112 (546)
                               ..+.+.+|.++.|++|+
T Consensus       339 g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          339 PDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             ---------CHHHHHCSEEEEEEECS
T ss_pred             CCCccCCchhHHHHhcceEEEEEecC
Confidence                     23467789999998764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.27  E-value=0.0033  Score=69.58  Aligned_cols=75  Identities=11%  Similarity=0.161  Sum_probs=56.9

Q ss_pred             hCCCeEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCCch---H---HHhhc-----CeEEEEeCC
Q 009033           51 MRPRLLFLDEP------TSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQPSS---E---VFELF-----DRLYLLSGG  111 (546)
Q Consensus        51 ~~P~il~LDEP------tsgLD~~~~~~v~~~L~~l~~--~g~tvi~~~H~p~~---~---i~~~~-----D~v~lL~~G  111 (546)
                      .+|+++++|||      |+|||+..+.++.++++++.+  .+.++++++|+...   +   +....     ..|.++.++
T Consensus       145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~  224 (608)
T 3szr_A          145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP  224 (608)
T ss_dssp             SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred             CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence            46999999999      999999999999999999754  36788888998531   2   22222     457899999


Q ss_pred             eEEEecChhHHHHH
Q 009033          112 KTVYFGETSAAFEF  125 (546)
Q Consensus       112 ~~v~~G~~~~~~~~  125 (546)
                      ..+..|+.+++.+.
T Consensus       225 Dlv~~g~~~~~~~~  238 (608)
T 3szr_A          225 DLVDKGTEDKVVDV  238 (608)
T ss_dssp             GGSSSSSTTCCCCC
T ss_pred             hhcCcccHHHHHHH
Confidence            99988877655443

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.25  E-value=0.0016  Score=67.60  Aligned_cols=59  Identities=17%  Similarity=0.304  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           42 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        42 Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      +.+|+.+|..+|+++++||||   |..+...   .++. +..|.+|+.|+|..  ++...+||++.|.
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~--~~~~~~~rl~~l~  257 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETGHLVFGTLHTN--TAIDTIHRIVDIF  257 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence            579999999999999999999   7666443   3443 35689999999995  3778888887664

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.18  E-value=0.013  Score=56.02  Aligned_cols=60  Identities=20%  Similarity=0.115  Sum_probs=46.5

Q ss_pred             hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCchH-------HHhhcCeEEEEeC
Q 009033           51 MRPRLLFLDEPTSGL--DSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE-------VFELFDRLYLLSG  110 (546)
Q Consensus        51 ~~P~il~LDEPtsgL--D~~~~~~v~~~L~~l~-~~g~tvi~~~H~p~~~-------i~~~~D~v~lL~~  110 (546)
                      .+|+++++|||++.+  |+....+.+..|.+++ +.|.|||+++|.....       +.+.+|.++.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            589999999999988  6655667777777765 4689999999985431       5678899999974

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.11  E-value=0.0008  Score=69.58  Aligned_cols=73  Identities=12%  Similarity=-0.140  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHHHHHHH-hCCCeEEEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhc
Q 009033           34 GISGGERRRVSIALEIL-MRPRLLFLDE---PT------SGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~-~~P~il~LDE---Pt------sgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~  102 (546)
                      .+|+|+++|..+++.+. .+|++++|||   |+      .++|...+..+.+.|+++.+ .|.+|++++|.  ++..+++
T Consensus       258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~--~~~~r~~  335 (365)
T 1lw7_A          258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP--SYLDRYN  335 (365)
T ss_dssp             HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS--SHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC--CHHHHHH
Confidence            46777788888887764 5999999999   65      58999999999999999865 48899998874  3555666


Q ss_pred             CeEEEE
Q 009033          103 DRLYLL  108 (546)
Q Consensus       103 D~v~lL  108 (546)
                      |++.++
T Consensus       336 ~~i~~i  341 (365)
T 1lw7_A          336 QVKAVI  341 (365)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655444

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.09  E-value=0.00067  Score=68.94  Aligned_cols=57  Identities=12%  Similarity=0.081  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcC
Q 009033           34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD  103 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D  103 (546)
                      ++|+||+||+..++.++.+|+++  |||         .++.+.|+++. .+.||++++|.+. ++..++|
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~  197 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN  197 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence            58999999999888888999988  998         77888888875 5789999999864 4444444

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.07  E-value=0.00067  Score=71.66  Aligned_cols=54  Identities=15%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCC---eEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033           35 ISGGERRRVSIALEILMRPR---LLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ   93 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~---il~LDEPt-sgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~   93 (546)
                      ++.++++|+.||++++.+|+   +|++|||| .|||+...    +.++.+.. +.+||+++|.
T Consensus       119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK  176 (418)
T 2qag_C          119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK  176 (418)
T ss_dssp             HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence            45667788889999999999   99999999 69999873    44555554 6888888886

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.02  E-value=0.0015  Score=66.02  Aligned_cols=55  Identities=15%  Similarity=0.090  Sum_probs=42.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009033           35 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP   94 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p   94 (546)
                      ++..++||+.||++++.+|+.++|     .||+.+..++++.++++.+ .|.|+|++||..
T Consensus       203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d  258 (304)
T 1rj9_A          203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD  258 (304)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence            456679999999999999994443     4555555567777788775 489999999984

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.80  E-value=0.026  Score=58.00  Aligned_cols=78  Identities=18%  Similarity=0.109  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH---H-hCCCEEEEEecCCch-----
Q 009033           41 RRVSIALEILMR--PRLLFLDEPTSGL----------DS---AAAFFVTQTLRCL---S-RDGRTVIASIHQPSS-----   96 (546)
Q Consensus        41 ~Rvsia~~l~~~--P~il~LDEPtsgL----------D~---~~~~~v~~~L~~l---~-~~g~tvi~~~H~p~~-----   96 (546)
                      +-+.++++++.+  |+++++||+++.+          |+   ..+..+.+.+++|   + +.|+|||++.|....     
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~  205 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF  205 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            346678888765  9999999999998          33   2333445555555   3 468999999996421     


Q ss_pred             ----------HHHhhcCeEEEEeCCeEEEecC
Q 009033           97 ----------EVFELFDRLYLLSGGKTVYFGE  118 (546)
Q Consensus        97 ----------~i~~~~D~v~lL~~G~~v~~G~  118 (546)
                                .+.+.+|.++.++.++++..|+
T Consensus       206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence                      2567899999998887665554

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.56  E-value=0.003  Score=66.64  Aligned_cols=70  Identities=19%  Similarity=0.208  Sum_probs=52.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhhcCeE
Q 009033           31 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRL  105 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l-~~~g~tvi~~~H~p~~~i~~~~D~v  105 (546)
                      ....+|+|++|++.++++|+.+|.++++    +++|...+ ..++.+++. .+.|.+++.++..-...+.++++.+
T Consensus       249 ~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i  319 (416)
T 1udx_A          249 PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL  319 (416)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence            3456999999999999999999999999    99999877 555555554 4457777665544345666666554

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.46  E-value=0.0007  Score=68.00  Aligned_cols=37  Identities=14%  Similarity=0.186  Sum_probs=31.6

Q ss_pred             ccCCCCHHHHHHHHHH--HHHHhCCCeEEEeCCCCCCCHHH
Q 009033           31 HLRGISGGERRRVSIA--LEILMRPRLLFLDEPTSGLDSAA   69 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia--~~l~~~P~il~LDEPtsgLD~~~   69 (546)
                      +.+.+||||+||+.+|  +++  +|+|||+|||++++|+..
T Consensus       131 y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A          131 YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred             CccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence            3467999999999987  454  899999999999999853

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.46  E-value=0.00027  Score=68.79  Aligned_cols=46  Identities=24%  Similarity=0.277  Sum_probs=39.1

Q ss_pred             ccCCCCHHHHHHHHHHHHH-HhCCCeEEEe----CCCCCCCHHHHHHHHHHHHHHHhC
Q 009033           31 HLRGISGGERRRVSIALEI-LMRPRLLFLD----EPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus        31 ~~~~lSgGer~Rvsia~~l-~~~P~il~LD----EPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      .+..+||    |+   +++ +.+|++++||    |||+|||..+...+.+.++++.++
T Consensus       149 ~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          149 WIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             EEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred             CCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence            3445787    55   566 8999999999    999999999999999999998765

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.39  E-value=0.0078  Score=68.50  Aligned_cols=80  Identities=20%  Similarity=0.206  Sum_probs=62.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCchHHHhhcCeEEEEe
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIAS-IHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPts-gLD~~~~~~v~~~L~~l~~~g~tvi~~-~H~p~~~i~~~~D~v~lL~  109 (546)
                      +.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.....+.++|++| ||++ .++.+++++.-++.
T Consensus       188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~vi~  266 (773)
T 2xau_A          188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPLLA  266 (773)
T ss_dssp             EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCEEE
T ss_pred             EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCccc
Confidence            34468999999999999999999999999996 999888777777776665556788886 8874 67777887544433


Q ss_pred             -CCe
Q 009033          110 -GGK  112 (546)
Q Consensus       110 -~G~  112 (546)
                       .|+
T Consensus       267 v~gr  270 (773)
T 2xau_A          267 VPGR  270 (773)
T ss_dssp             CCCC
T ss_pred             ccCc
Confidence             443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.31  E-value=0.00056  Score=63.26  Aligned_cols=70  Identities=17%  Similarity=0.193  Sum_probs=47.1

Q ss_pred             HHHHHHHH-cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeE-------EEeCCCCC---CCHHHHHHHHHHH
Q 009033            9 LVERTIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-------FLDEPTSG---LDSAAAFFVTQTL   77 (546)
Q Consensus         9 ~v~~~l~~-lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il-------~LDEPtsg---LD~~~~~~v~~~L   77 (546)
                      .+++.++. +.   -.|+.+|.    +||||||||++|||+++.+|++.       .-|.|..+   +|......+.+.+
T Consensus        84 ~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i  156 (171)
T 2f1r_A           84 DLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFI  156 (171)
T ss_dssp             CHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHH
T ss_pred             CHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHH
Confidence            34556665 43   36888875    59999999999999999999873       22454322   3445566777777


Q ss_pred             HHHHhCCC
Q 009033           78 RCLSRDGR   85 (546)
Q Consensus        78 ~~l~~~g~   85 (546)
                      .+...+|.
T Consensus       157 ~~~~~~~~  164 (171)
T 2f1r_A          157 LSLLREGG  164 (171)
T ss_dssp             HHHHTC--
T ss_pred             HHHHhccC
Confidence            66666553

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.72  E-value=0.044  Score=58.71  Aligned_cols=58  Identities=26%  Similarity=0.361  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCC
Q 009033           37 GGERRRVSIALEILMRPRLLFLDEP----------TSGLDSAAAFFVTQTLRCLS----RDGRTVIASIHQP   94 (546)
Q Consensus        37 gGer~Rvsia~~l~~~P~il~LDEP----------tsgLD~~~~~~v~~~L~~l~----~~g~tvi~~~H~p   94 (546)
                      |+++.|..++.+....|.|||+||+          ++|.|......+.++|..+.    +.+..||.++|+|
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~  164 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP  164 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence            6778888999999999999999999          34677766666666666663    3578999999997

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=94.52  E-value=0.0023  Score=69.11  Aligned_cols=88  Identities=13%  Similarity=0.077  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHH----------HHHHHHHhCCC-eEEEeCCCCCCCHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV----------SIALEILMRPR-LLFLDEPTSGLDSAAAFFV   73 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rv----------sia~~l~~~P~-il~LDEPtsgLD~~~~~~v   73 (546)
                      +.++|. +.++..|+.+..+-.-  .....+||||+||.          .+++++...|. ++++||++.-+|.. ...+
T Consensus       242 EmerR~-~ll~~~Gv~~i~~yn~--~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~  317 (512)
T 2ius_A          242 EMERRY-KLMSALGVRNLAGYNE--KIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKV  317 (512)
T ss_dssp             HHHHHH-HHHHHTTCSSHHHHHH--HHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHH
T ss_pred             HHHHHH-HHHHHcCCccHHHHHH--HHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHH
Confidence            334443 6778888876543210  01124688887652          24555667897 78999999988843 3456


Q ss_pred             HHHHHHHHh----CCCEEEEEecCCch
Q 009033           74 TQTLRCLSR----DGRTVIASIHQPSS   96 (546)
Q Consensus        74 ~~~L~~l~~----~g~tvi~~~H~p~~   96 (546)
                      .+.+.++++    .|.++|+++|.|+.
T Consensus       318 ~~~l~~Lar~gRa~GI~LIlaTQrp~~  344 (512)
T 2ius_A          318 EELIARLAQKARAAGIHLVLATQRPSV  344 (512)
T ss_dssp             HHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred             HHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence            666666654    37799999999973

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.91  E-value=0.065  Score=51.20  Aligned_cols=63  Identities=21%  Similarity=0.195  Sum_probs=48.4

Q ss_pred             HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHH
Q 009033           46 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF  125 (546)
Q Consensus        46 a~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~  125 (546)
                      ..+++..+++++||     ||+.++.++.+.+.    +|.||++++|++ .++.+   |+  +..|    .|+++++...
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~r  161 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKR  161 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHH
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHH
Confidence            45677789999999     99999999999876    589999999995 55544   43  6667    5677776654


Q ss_pred             HH
Q 009033          126 FA  127 (546)
Q Consensus       126 f~  127 (546)
                      +.
T Consensus       162 l~  163 (219)
T 1s96_A          162 MA  163 (219)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=93.73  E-value=0.0003  Score=73.70  Aligned_cols=67  Identities=19%  Similarity=0.229  Sum_probs=59.2

Q ss_pred             CC--CeEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCchHHHhhcCeEE-EEeCC-eEEEecChhH
Q 009033           52 RP--RLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLY-LLSGG-KTVYFGETSA  121 (546)
Q Consensus        52 ~P--~il~LDEPtsgLD~~~~~~v~~~L~~l-~~~g~tvi~~~H~p~~~i~~~~D~v~-lL~~G-~~v~~G~~~~  121 (546)
                      +|  +++++|||+.++|+.......+.++++ ++.|.|++  +|. ..++.+++|++. +|.+| ++++.|+.++
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~-~~~~~~l~~~i~~~L~~G~~~~~~~~~~~  210 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKA-KKEEQAIIEKVYQYLTETKQPIRKGDWSN  210 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHH-HHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-HHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence            78  999999999999999999999999998 77787864  998 578999999999 99999 9998887543

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=93.33  E-value=0.25  Score=49.65  Aligned_cols=75  Identities=13%  Similarity=0.140  Sum_probs=48.4

Q ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEeCCCC----------------CCC--------------------H-HHHHHHHHHH
Q 009033           35 ISGGERRRVSIALEILMRPRLLFLDEPTS----------------GLD--------------------S-AAAFFVTQTL   77 (546)
Q Consensus        35 lSgGer~Rvsia~~l~~~P~il~LDEPts----------------gLD--------------------~-~~~~~v~~~L   77 (546)
                      ||++|++|+..|...+.++++.+.|+|..                |.+                    . ....++.+.|
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~L  213 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL  213 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHH
Confidence            78888888877776666555555555421                111                    0 2234566778


Q ss_pred             HHHHh-CCCEEEEEecCCc------------------hHHHhhcCeEEEEe
Q 009033           78 RCLSR-DGRTVIASIHQPS------------------SEVFELFDRLYLLS  109 (546)
Q Consensus        78 ~~l~~-~g~tvi~~~H~p~------------------~~i~~~~D~v~lL~  109 (546)
                      +.+++ .|++||+++|-..                  ..+.+.+|-|+.|.
T Consensus       214 k~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~  264 (315)
T 3bh0_A          214 KKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLY  264 (315)
T ss_dssp             HHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEE
T ss_pred             HHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEe
Confidence            88876 4889999888531                  23667788888875

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=93.26  E-value=0.096  Score=53.51  Aligned_cols=76  Identities=12%  Similarity=0.161  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      +.++...+.......+++++..+   |     .||++|++|+..|...+.++++.+.|+|...     ..++...++++.
T Consensus        85 s~~ql~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~  151 (338)
T 4a1f_A           85 SAEQLALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLK  151 (338)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHH
Confidence            44444444444444445544432   2     4999999999999999999999999998654     336677777776


Q ss_pred             h-C-CCEEEEE
Q 009033           82 R-D-GRTVIAS   90 (546)
Q Consensus        82 ~-~-g~tvi~~   90 (546)
                      + . |..+|++
T Consensus       152 ~~~gg~~lIVI  162 (338)
T 4a1f_A          152 SQHKELGIAFI  162 (338)
T ss_dssp             HHCTTEEEEEE
T ss_pred             HhcCCCCEEEE
Confidence            5 3 5666655

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=92.80  E-value=0.023  Score=60.28  Aligned_cols=69  Identities=14%  Similarity=0.221  Sum_probs=51.5

Q ss_pred             CCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE-EeCCeEEEecChh
Q 009033           52 RPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVYFGETS  120 (546)
Q Consensus        52 ~P~il~LDEPtsgLD~-~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l-L~~G~~v~~G~~~  120 (546)
                      +|++|++||+..-.+. .++..+.+.+..+.+.|+.||+++|.|..++..+.+++.- +..|.++..++++
T Consensus       194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~  264 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD  264 (440)
T ss_dssp             TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred             CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence            8999999999887664 6778888999998888999999999976554333344332 4567777776654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=91.97  E-value=0.021  Score=52.46  Aligned_cols=54  Identities=13%  Similarity=-0.068  Sum_probs=40.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009033           32 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ   93 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~   93 (546)
                      +..+|+|++||+.++|++..+|+++        +|+.....+.+.++.+...+..+|.++++
T Consensus       107 ~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~  160 (191)
T 1zp6_A          107 LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGK  160 (191)
T ss_dssp             EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTC
T ss_pred             eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCC
Confidence            3469999999999999999999876        68888888777777665433345555443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=91.02  E-value=0.34  Score=51.81  Aligned_cols=71  Identities=23%  Similarity=0.355  Sum_probs=50.4

Q ss_pred             cCCCCHHHHHHHHHHH--HHHh-----------C---C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009033           32 LRGISGGERRRVSIAL--EILM-----------R---P-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP   94 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~--~l~~-----------~---P-~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p   94 (546)
                      ..+.||||+|-.-+|+  +++.           +   + .++++||. +-+|...+...++.++++-   .=+|+++  |
T Consensus       377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lg---lQliiat--P  450 (483)
T 3euj_A          377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLD---MQLLIAA--P  450 (483)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTT---CEEEEEE--S
T ss_pred             cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcC---CEEEEEC--c
Confidence            4679999999754443  3332           1   2 57999999 9999999999999999874   4444444  3


Q ss_pred             chHHHhhcCeEEEEe
Q 009033           95 SSEVFELFDRLYLLS  109 (546)
Q Consensus        95 ~~~i~~~~D~v~lL~  109 (546)
                      . .+....|.++.+.
T Consensus       451 ~-~i~p~v~~~~~~~  464 (483)
T 3euj_A          451 E-NISPERGTTYKLV  464 (483)
T ss_dssp             S-SCCCSSSEEEECC
T ss_pred             c-hhhhccCceEEEE
Confidence            2 4556677777664

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=90.08  E-value=0.23  Score=46.60  Aligned_cols=73  Identities=21%  Similarity=0.099  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHH--hCCCeEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           40 RRRVSIALEIL--MRPRLLFLDEPTS--GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        40 r~Rvsia~~l~--~~P~il~LDEPts--gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      ++.+.-++..+  .+.++++|||.+.  .++-....++++.|++- ..+..||+|...+.+++.+.+|-|--|..-+-
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~VTem~~vkH  182 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTVSELRPVKH  182 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEEEECCCSCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcceeeecceeC
Confidence            44566677777  5579999999976  23333444566666532 24689999999999999999999999986654

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=89.90  E-value=0.6  Score=46.46  Aligned_cols=46  Identities=17%  Similarity=0.086  Sum_probs=38.4

Q ss_pred             CHHHHHHHHHHHHHHhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 009033           36 SGGERRRVSIALEILMRPRLLFLDEP-TSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus        36 SgGer~Rvsia~~l~~~P~il~LDEP-tsgLD~~~~~~v~~~L~~l~   81 (546)
                      ...+.+|..++.+...+++++++||| ++|+|.....++.+..+.+.
T Consensus       164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~  210 (295)
T 1ls1_A          164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG  210 (295)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence            45566788999888899999999999 99999988888877776653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=89.68  E-value=0.15  Score=50.90  Aligned_cols=70  Identities=7%  Similarity=0.169  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCCEEEE-EecCCchHHHhhcCeEEEEeCCeEEEe
Q 009033           42 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS---RDGRTVIA-SIHQPSSEVFELFDRLYLLSGGKTVYF  116 (546)
Q Consensus        42 Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~---~~g~tvi~-~~H~p~~~i~~~~D~v~lL~~G~~v~~  116 (546)
                      +..++  .+.+|+++|+|  |+|+|+.....+.++.+-+.   ..+.++++ ++|. ..++.+.+|++..+..|.++..
T Consensus       174 ~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~-~~~~~~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          174 QQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK-YEDMKHIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             HHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC-HHHHHHHTTTTSSSCCCEEEEE
T ss_pred             HHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC-HHHHHHHHHHHhcCCCCEEEEe
Confidence            44444  45999999999  99999876655444443333   23345555 4787 4678888887766666777653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=89.54  E-value=0.31  Score=49.01  Aligned_cols=45  Identities=13%  Similarity=0.182  Sum_probs=35.2

Q ss_pred             CCCHHHHHHH---HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033           34 GISGGERRRV---SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus        34 ~lSgGer~Rv---sia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ..|||+.+++   ++++++..+|+++++|||..   ......+++.|+++.
T Consensus       165 ~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~  212 (306)
T 1vma_A          165 HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH  212 (306)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred             cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence            3689999999   89999999999999999974   344455666666554

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=88.48  E-value=0.52  Score=48.07  Aligned_cols=60  Identities=12%  Similarity=0.106  Sum_probs=47.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCC
Q 009033           33 RGISGGERRRVSIALEILMRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI--HQP   94 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~~P~il~LD-EPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~--H~p   94 (546)
                      ..+|+||+|++. +.....++-++++| +|++|+|.....++++.++.... +.++|++.  ||.
T Consensus       230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl  292 (357)
T 2e87_A          230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV  292 (357)
T ss_dssp             TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred             hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence            457899998876 55555677788999 99999999998888888877654 67788887  774

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=88.42  E-value=0.24  Score=50.69  Aligned_cols=29  Identities=14%  Similarity=0.292  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHHHHHH---Hh--CCCeEEEeCCC
Q 009033           34 GISGGERRRVSIALEI---LM--RPRLLFLDEPT   62 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l---~~--~P~il~LDEPt   62 (546)
                      .+|+||+||..++++|   ..  +++++++|||+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            3899999999999999   77  89999999997

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=87.37  E-value=0.1  Score=53.71  Aligned_cols=69  Identities=17%  Similarity=0.107  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 009033           36 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT  113 (546)
Q Consensus        36 SgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~  113 (546)
                      +++...|..|+.++..+|+.+++||++.       .++.+.|+.+.....|++.++|..+  ....+||+..+.+|..
T Consensus       236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~~  304 (361)
T 2gza_A          236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQNR  304 (361)
T ss_dssp             ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTST
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhccc
Confidence            4666789999999999999999999986       3455667777655568899999953  6788999988877643

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=85.56  E-value=2  Score=41.97  Aligned_cols=72  Identities=22%  Similarity=0.299  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---hHH
Q 009033           36 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA----------AAFFVTQTLRCLSR----DGRTVIASIHQPS---SEV   98 (546)
Q Consensus        36 SgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~----------~~~~v~~~L~~l~~----~g~tvi~~~H~p~---~~i   98 (546)
                      +++++.|..++.+...+|.+|++||+.+-++..          ....++..+.....    .+..||.++++|.   ..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l  176 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA  176 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence            567788888888888899999999998776532          22334444444432    2456788888752   334


Q ss_pred             HhhcCeEEE
Q 009033           99 FELFDRLYL  107 (546)
Q Consensus        99 ~~~~D~v~l  107 (546)
                      ...||+.+.
T Consensus       177 ~~R~~~~i~  185 (297)
T 3b9p_A          177 LRRFTKRVY  185 (297)
T ss_dssp             HHHCCEEEE
T ss_pred             HhhCCeEEE
Confidence            445665543

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=85.38  E-value=1.2  Score=42.55  Aligned_cols=53  Identities=23%  Similarity=0.342  Sum_probs=43.7

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 009033           52 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS  109 (546)
Q Consensus        52 ~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H---------~p~~~i~~~~D~v~lL~  109 (546)
                      +|+++++||--. |+.    ++++.++.+++.|.+||++-|         .++.++..++|.|.-|.
T Consensus        89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            489999999964 654    355667777777999999999         77789999999999875

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=82.54  E-value=0.02  Score=53.59  Aligned_cols=53  Identities=19%  Similarity=0.255  Sum_probs=39.5

Q ss_pred             HHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEe
Q 009033           48 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS  109 (546)
Q Consensus        48 ~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~  109 (546)
                      +++.+|++++|||+|+++|..+...+.+.|++..++    +...|.+     ..+|.|++++
T Consensus       120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd  172 (198)
T 1lvg_A          120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND  172 (198)
T ss_dssp             EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred             EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence            566777777888889999999999999988887653    1234521     5699987765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=81.81  E-value=1.6  Score=45.92  Aligned_cols=58  Identities=3%  Similarity=0.046  Sum_probs=47.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 009033           33 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQ   93 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~-l~~~g~tvi~~~H~   93 (546)
                      .+++-.+   +.|+..|..+++++++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus       160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            3677666   7899999889999999999999999999999999986 88889998887754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=81.81  E-value=0.0016  Score=64.32  Aligned_cols=70  Identities=19%  Similarity=0.134  Sum_probs=49.7

Q ss_pred             ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCe--EEEeCCCCCCCHHHH--------HHHHHHHHHHHhCCCEEEEE
Q 009033           21 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRL--LFLDEPTSGLDSAAA--------FFVTQTLRCLSRDGRTVIAS   90 (546)
Q Consensus        21 ~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~i--l~LDEPtsgLD~~~~--------~~v~~~L~~l~~~g~tvi~~   90 (546)
                      ...++.|+....+ +|+|  ||+.|++.++.+|++  +++||.|+.+|...+        ..+.+...++..+|+|.+..
T Consensus       160 ~~l~~vi~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~  236 (261)
T 2eyu_A          160 FILQGIISQRLLP-KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLED  236 (261)
T ss_dssp             HHEEEEEEEEEEC-CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHH
T ss_pred             HHhhEEEEEEeEe-cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHH
Confidence            3455566553333 6888  899999999999999  999999999998743        23444444455568877666


Q ss_pred             ecC
Q 009033           91 IHQ   93 (546)
Q Consensus        91 ~H~   93 (546)
                      .|.
T Consensus       237 a~r  239 (261)
T 2eyu_A          237 AME  239 (261)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=81.36  E-value=7.2  Score=40.78  Aligned_cols=66  Identities=17%  Similarity=0.162  Sum_probs=44.8

Q ss_pred             HHHHHH--hCCCeEEEeCCCCCCCH----------HHHHHHHHHHHHHHh-CCCEEEEEecC-----------Cc-----
Q 009033           45 IALEIL--MRPRLLFLDEPTSGLDS----------AAAFFVTQTLRCLSR-DGRTVIASIHQ-----------PS-----   95 (546)
Q Consensus        45 ia~~l~--~~P~il~LDEPtsgLD~----------~~~~~v~~~L~~l~~-~g~tvi~~~H~-----------p~-----   95 (546)
                      .++.+.  .+|+++++|..+.=.++          ....++.+.|+.+++ .|++||+++|-           |.     
T Consensus       301 ~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr  380 (444)
T 2q6t_A          301 RARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLR  380 (444)
T ss_dssp             HHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGG
T ss_pred             HHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhc
Confidence            344444  47999999998753322          123567788888887 58999999883           21     


Q ss_pred             --hHHHhhcCeEEEEeC
Q 009033           96 --SEVFELFDRLYLLSG  110 (546)
Q Consensus        96 --~~i~~~~D~v~lL~~  110 (546)
                        ..+.+.+|.|+.|..
T Consensus       381 ~Sg~ie~~aD~vi~L~r  397 (444)
T 2q6t_A          381 ESGSIEQDADLVMFIYR  397 (444)
T ss_dssp             GGCTTGGGCSEEEEEEE
T ss_pred             chhHHHHhCCEEEEEec
Confidence              135677898888853

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=81.29  E-value=0.35  Score=44.22  Aligned_cols=39  Identities=26%  Similarity=0.158  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033           40 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus        40 r~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      .+...+|++++.+|+++++|  ||++|..+..++++.|.+.
T Consensus       151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence            34578899999999999999  9999999999999988753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=80.37  E-value=0.77  Score=47.14  Aligned_cols=42  Identities=10%  Similarity=-0.137  Sum_probs=32.8

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI   49 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l   49 (546)
                      ++++..+.+.++++.+|+.+..|..     +.++| ||+||++||+++
T Consensus       287 ~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          287 EPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA  328 (358)
T ss_dssp             CHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence            3455667778889999998877774     45699 999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	546
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	4e-18
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	4e-18
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	1e-17
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	5e-17
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	3e-16
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	5e-16
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	6e-16
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	7e-16
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-15
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-15
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	9e-15
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-14
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	3e-13
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	3e-13
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	4e-13
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	5e-12
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	9e-11
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	8e-10
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-08
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-08
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	6e-08
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	2e-04

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 81.5 bits (201), Expect = 4e-18
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 2   PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 61
               KR L     +   L++    + G      +SGGE++ ++I   ++ RP+LL +DEP
Sbjct: 112 KEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEP 166

Query: 62  TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 121
           + GL       V + ++ ++++G T++           ++    Y+L  G+ V  G+ S 
Sbjct: 167 SLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASE 225

Query: 122 AFE 124
             +
Sbjct: 226 LLD 228

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 81.9 bits (202), Expect = 4e-18
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 5   EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 64
           E      + +  + L    D   G      +SGG+ + V I   ++  P+++ +DEP +G
Sbjct: 126 EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAG 180

Query: 65  LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
           +    A  +   +  L   G T +   H+    V    D LY++  G+ +  G      +
Sbjct: 181 VAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
             +       +         +  +TV+G   +  +SGG+R R+S+A  +     L  LD 
Sbjct: 126 YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDS 184

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 117
           P   LD      V ++  C     +T I    +   E     D++ +L  G + ++G
Sbjct: 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQGSSYFYG 239

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 78.5 bits (193), Expect = 5e-17
 Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
              SE   +VER     GL +     +  +     S G  R++ IA  +++ PRL  LDE
Sbjct: 105 SSSSEIEEMVERATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDE 159

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTSGLD   A  V + L+  S++G T++ S H    EV  L DR+ L+  G  V  G   
Sbjct: 160 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVE 218

Query: 121 AAFE 124
              E
Sbjct: 219 ELKE 222

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 76.4 bits (188), Expect = 3e-16
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
           M L    DT +G   ++ +SGG+++R+SIA   L  P +L LDE TS LD  +   + + 
Sbjct: 138 MNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 196

Query: 77  LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 131
           L  LS+  RT +   H+ S       D++ ++  G  V  G      E  A+ G 
Sbjct: 197 LDVLSK-DRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHR---ELIAKQGA 245

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 75.7 bits (186), Expect = 5e-16
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
             + +  DT+IG  +   +SGG+R+R++IA  +L    +L LDE TS LD+ +   +   
Sbjct: 136 NKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 194

Query: 77  LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 131
           L  L +  RT +   H+ S    E  D + ++  G  V  G  S   E  AQ G 
Sbjct: 195 LDELQK-NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHS---ELLAQHGV 243

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 75.2 bits (185), Expect = 6e-16
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
            P  E    V      + +++  +          +SGG+R+RV++A  I++ P +L +DE
Sbjct: 108 FPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDE 162

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           P S LD+     +   ++ L +    T I   H    E   + DR+ +++ G+ +  G  
Sbjct: 163 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSP 221

Query: 120 SAAFE 124
           +  + 
Sbjct: 222 TEVYL 226

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 74.9 bits (184), Expect = 7e-16
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M   E+R      +    L++       N     +SGG+++RV+IA  +   P ++  D+
Sbjct: 116 MSGEERRKRALECLKMAELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           PT  LDS     + Q L+ L+ + G+TV+   H     V    +R+  L  G+     + 
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKL 229

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +   + R    + + ++G+ + A       +   +SGG+++RVSIA  + M P +L  DE
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 175

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 120
           PTS LD      V + ++ L+ +G+T++   H+       +   +  L  GK    G+  
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPE 234

Query: 121 AAFE 124
             F 
Sbjct: 235 QVFG 238

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +P  E    V      +GL +  +          +SGG+R+RV++   I+ +P++  +DE
Sbjct: 111 VPRQEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDE 165

Query: 61  PTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           P S LD+     +   L+ L  + G T I   H    E   + DR+ +++ G     G  
Sbjct: 166 PLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSP 224

Query: 120 SAAFE 124
              ++
Sbjct: 225 DEVYD 229

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 71.8 bits (176), Expect = 9e-15
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
            P  E +  V   +  +GL D  D+   N     +SGG+++RV+IA  +   P++L  DE
Sbjct: 112 TPKDEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDE 166

Query: 61  PTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
            TS LD A    + + L+ ++R  G T++   H+    V  + D + ++S G+ +     
Sbjct: 167 ATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTV 225

Query: 120 SAAFE 124
           S  F 
Sbjct: 226 SEVFS 230

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 71.1 bits (174), Expect = 1e-14
 Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 13/131 (9%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RP 53
                +  L+      + L D             +SGGE +RV +A  +L          
Sbjct: 97  QHDKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAG 151

Query: 54  RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 113
           +LL LDEP + LD A    + + L  L + G  ++ S H   +       R +LL GGK 
Sbjct: 152 QLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKM 210

Query: 114 VYFGETSAAFE 124
           +  G       
Sbjct: 211 LASGRREEVLT 221

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 29  NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 88
                G+SGG+R+R++IA  ++  P++L  DE TS LD  +   + + +  + + GRTVI
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVI 192

Query: 89  ASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 124
              H+ S    +  DR+ ++  GK V  G+      
Sbjct: 193 IIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 17  MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 76
            GL    DT +       +SGG+R+ V++A  ++ +P +L LD+ TS LD+ +   V Q 
Sbjct: 135 SGLPQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 193

Query: 77  LRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 131
           L        R+V+      S  + E  D +  L GG     G      +   + G 
Sbjct: 194 LYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQ---QLMEKKGC 244

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 67.2 bits (164), Expect = 4e-13
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)

Query: 35  ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 94
           ISGG+R+R++IA   L  P++L LDE T+ LDS +   V + L  L + GRT +   H+ 
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRL 198

Query: 95  SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 131
           S       D++Y +  G+    G+ +   E  A    
Sbjct: 199 S--TIVDADKIYFIEKGQITGSGKHN---ELVATHPL 230

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 63.4 bits (154), Expect = 5e-12
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
                    V +    + L    D          +SGG+R+RV+I   ++  P +  LDE
Sbjct: 102 AKKEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDE 156

Query: 61  PTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           P S LD+A    +   +  L  R GRT+I   H    E   L D++ +L  G+    G+ 
Sbjct: 157 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKP 215

Query: 120 SAAFE 124
              + 
Sbjct: 216 LELYH 220

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 59.2 bits (143), Expect = 9e-11
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
                 +  +   +  + + D          L  +S G  RRV +A  +L+   +  LD+
Sbjct: 98  YGVKVNKNEIMDALESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIYVLDD 151

Query: 61  PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 108
           P   +D  +   V +++  + ++   VI S      E     D    L
Sbjct: 152 PVVAIDEDSKHKVLKSILEILKEKGIVIISSR----EELSYCDVNENL 195

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 57.0 bits (137), Expect = 8e-10
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M   E R  VE     + +    +        R +SG +++RV++A  ++  P LL LDE
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDE 166

Query: 61  PTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           P S LD+         ++ + SR G T++   H P +++F + DR+ +L  GK V  G+ 
Sbjct: 167 PFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225

Query: 120 SAAFE 124
              ++
Sbjct: 226 EDLYD 230

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           M   +    V  T  ++ ++   D           SGGE++RV++A  ++  P++L LDE
Sbjct: 99  MKKIKDPKRVLDTARDLKIEHLLDRNPLTL-----SGGEQQRVALARALVTNPKILLLDE 153

Query: 61  PTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           P S LD        + L  L  ++  TV+   H   +E   + DR+ ++  GK +  G+ 
Sbjct: 154 PLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKP 212

Query: 120 SAAFE 124
              FE
Sbjct: 213 EEIFE 217

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 51.6 bits (123), Expect = 6e-08
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 1   MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 60
           +   E+   V     ++G+    D           SGGER+RV++A  ++++PRLL LDE
Sbjct: 98  VERVERDRRVREMAEKLGIAHLLDRKPARL-----SGGERQRVALARALVIQPRLLLLDE 152

Query: 61  PTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 119
           P S +D      + + LR +       ++   H    E   L D + ++  G+ V  G+ 
Sbjct: 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKL 211

Query: 120 SAAFE 124
              F 
Sbjct: 212 KELFS 216

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 31  HLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 86
            +  +SGGE+   ++AL              LDE  + LD      +   +R        
Sbjct: 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQ 388

Query: 87  VIASIHQPSSEVFELFDRLY 106
            I    +    +FE  D L 
Sbjct: 389 FIVISLKN--TMFEKSDALV 406

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	546
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.96
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.95
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.95
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.95
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.94
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.94
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.94
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.93
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.93
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.91
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.91
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.9
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.9
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.89
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.89
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.87
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.71
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.52
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.22
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.81
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.06
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.97
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.16
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.56
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.66
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	82.67

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.96  E-value=1.4e-28  Score=239.47  Aligned_cols=118  Identities=27%  Similarity=0.463  Sum_probs=109.8

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++++++++++++.+||++.+|++     +++|||||||||+|||+|+++|++|+|||||+|||+.++.++++.|+++
T Consensus       111 ~~~~e~~~~v~~~l~~~~l~~~~~~~-----p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l  185 (240)
T d1g2912         111 VPRQEIDQRVREVAELLGLTELLNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL  185 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHH
Confidence            35778899999999999999988874     4679999999999999999999999999999999999999999999999


Q ss_pred             HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .++ |.|||++||++ .++.++||||++|++|++++.|+++++.+
T Consensus       186 ~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~el~~  229 (240)
T d1g2912         186 QRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (240)
T ss_dssp             HHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            875 99999999994 89999999999999999999999998754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=1.8e-28  Score=238.28  Aligned_cols=118  Identities=24%  Similarity=0.390  Sum_probs=110.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++.+++++++++.+||++.+|+     ++.+|||||||||+|||+|+.+|+||+|||||+|||+.++.++.+.|+++
T Consensus       108 ~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l  182 (239)
T d1v43a3         108 FPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL  182 (239)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHH
Confidence            3678889999999999999998888     45679999999999999999999999999999999999999999999999


Q ss_pred             Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ++ .|+|||++||++ .++.++||||++|++|+++..|+++++.+
T Consensus       183 ~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~  226 (239)
T d1v43a3         183 QQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL  226 (239)
T ss_dssp             HHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            76 499999999995 89999999999999999999999998743

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=2.3e-28  Score=237.76  Aligned_cols=118  Identities=28%  Similarity=0.448  Sum_probs=109.7

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++.+++++++++.+||++.+|+..     .+|||||||||+|||+|+++|++|+|||||+|||+.++.++++.|+++
T Consensus       112 ~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l  186 (242)
T d1oxxk2         112 MSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV  186 (242)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcChHhhhhCCh-----hhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHH
Confidence            367788999999999999999888854     579999999999999999999999999999999999999999999999


Q ss_pred             Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+ .|.|+|++||++ .++.++||||++|++|+++..|+++++.+
T Consensus       187 ~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         187 QSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             HHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            76 599999999995 78999999999999999999999998754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.4e-28  Score=236.59  Aligned_cols=117  Identities=26%  Similarity=0.416  Sum_probs=89.3

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.++|++.+|+.+     ..|||||||||+|||+|+++|++|+|||||+|||+.++.++++.|+++.
T Consensus       103 ~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~  177 (232)
T d2awna2         103 KKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH  177 (232)
T ss_dssp             --CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence            46678899999999999999998854     5799999999999999999999999999999999999999999999997


Q ss_pred             h-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           82 R-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        82 ~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      + .|+|||++||++ .++.++||||++|++|+++..|+++++.+
T Consensus       178 ~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~  220 (232)
T d2awna2         178 KRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH  220 (232)
T ss_dssp             HHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            5 699999999995 89999999999999999999999998754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.2e-28  Score=236.03  Aligned_cols=116  Identities=28%  Similarity=0.411  Sum_probs=108.3

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            1 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         1 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +++++.+++++++++.+||++.+|+.     ++.|||||||||+|||+|+.+|++|||||||+|||+.++.++++.|+++
T Consensus       112 ~~~~~~~~~v~~~L~~vgL~~~~~~~-----~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l  186 (240)
T d3dhwc1         112 TPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI  186 (240)
T ss_dssp             CCTTHHHHHHHHHHHHHSTTTTTSSC-----BSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHH
Confidence            35678889999999999999988874     5679999999999999999999999999999999999999999999999


Q ss_pred             HhC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHH
Q 009033           81 SRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA  122 (546)
Q Consensus        81 ~~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~  122 (546)
                      .++ |.|||++||++ .++.++||||++|++|++++.|+++++
T Consensus       187 ~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~ei  228 (240)
T d3dhwc1         187 NRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEV  228 (240)
T ss_dssp             HHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred             HhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            875 99999999994 889999999999999999999999975

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.95  E-value=7.4e-28  Score=233.73  Aligned_cols=116  Identities=28%  Similarity=0.443  Sum_probs=108.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++.+++++++++++.+||.+.+|+.     +++|||||||||+|||+|+++|++|+|||||+|||+.++.++.+.+++++
T Consensus        99 ~~~~~~~~v~~~l~~~gl~~~~~~~-----~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~  173 (240)
T d2onka1          99 ERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ  173 (240)
T ss_dssp             CHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCcHhhhhCC-----hhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHH
Confidence            5678889999999999999988885     45799999999999999999999999999999999999999999999998


Q ss_pred             hC-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           82 RD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        82 ~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++ |.|||++||++ .++.++||||++|++|+++..|+++++.
T Consensus       174 ~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~  215 (240)
T d2onka1         174 REFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             HHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHh
Confidence            64 99999999995 8999999999999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=7.1e-27  Score=230.40  Aligned_cols=117  Identities=26%  Similarity=0.393  Sum_probs=107.5

Q ss_pred             CHHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      ++++.++++.++++.+||.+. .++     ++.+|||||||||+|||+|+.+|++|||||||+|||+.++.++++.|+++
T Consensus       121 ~~~~~~~~~~~~l~~~~l~~~~~~~-----~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l  195 (258)
T d1b0ua_         121 SKHDARERALKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL  195 (258)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHHHHTS-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchhhhcc-----CcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhh
Confidence            567788999999999999764 455     34579999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +++|+|||++||++ .++.++||||++|++|++++.|+++++..
T Consensus       196 ~~~g~til~vtHdl-~~~~~~adri~vm~~G~iv~~g~~~ev~~  238 (258)
T d1b0ua_         196 AEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVFG  238 (258)
T ss_dssp             HHTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cccCCceEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999995 89999999999999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.94  E-value=7e-27  Score=225.67  Aligned_cols=111  Identities=28%  Similarity=0.428  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009033            7 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGR   85 (546)
Q Consensus         7 ~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~   85 (546)
                      +++++++++.++|++..|+.+     ..|||||||||+|||+|+++|++|+|||||+|||+.++.++.+.|+++++ .|.
T Consensus       105 ~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~  179 (229)
T d3d31a2         105 PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL  179 (229)
T ss_dssp             HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            467999999999999998855     56999999999999999999999999999999999999999999999976 599


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           86 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        86 tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      |||++||++ .++.++||||++|++|++++.|+++++.
T Consensus       180 tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~  216 (229)
T d3d31a2         180 TVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF  216 (229)
T ss_dssp             EEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             EEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999995 7999999999999999999999999874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=1.7e-26  Score=225.22  Aligned_cols=118  Identities=36%  Similarity=0.412  Sum_probs=110.4

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS   81 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~   81 (546)
                      ++++.+++++++++.++|.+..++.++     +||||||||++||++|+++|++|+|||||+|||+.++.++.+++++++
T Consensus       106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~  180 (238)
T d1vpla_         106 SSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS  180 (238)
T ss_dssp             CHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence            456778889999999999999988665     599999999999999999999999999999999999999999999999


Q ss_pred             hCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHHH
Q 009033           82 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF  125 (546)
Q Consensus        82 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~  125 (546)
                      ++|+|||+++|++ .++..+||||++|++|++++.|+++++.+.
T Consensus       181 ~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~  223 (238)
T d1vpla_         181 QEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER  223 (238)
T ss_dssp             HTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence            9999999999995 899999999999999999999999998754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1.4e-26  Score=224.07  Aligned_cols=111  Identities=26%  Similarity=0.387  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            2 PWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         2 ~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+++++++.++++.+||.+ .+|+     ++.+|||||||||+|||+|+++|+||+|||||+|||+.++.++++.|+++
T Consensus       117 ~~~~~~~~~~~~l~~~~L~~~~~~~-----~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l  191 (230)
T d1l2ta_         117 SGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL  191 (230)
T ss_dssp             CHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhchhhhhhcC-----ChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence            45677888999999999975 5666     45679999999999999999999999999999999999999999999999


Q ss_pred             Hh-CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCh
Q 009033           81 SR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET  119 (546)
Q Consensus        81 ~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~  119 (546)
                      ++ .|+|||++||++ .++ ++||||++|++|+++..|++
T Consensus       192 ~~~~g~tii~vTHd~-~~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         192 NEEDGKTVVVVTHDI-NVA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHTTCCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             HHhhCCEEEEECCCH-HHH-HhCCEEEEEECCEEEEeccC
Confidence            86 599999999996 555 89999999999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.93  E-value=1.2e-26  Score=226.55  Aligned_cols=114  Identities=23%  Similarity=0.387  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009033            4 SEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR   82 (546)
Q Consensus         4 ~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~   82 (546)
                      +..++.++++++.+ +|++.+|+.++     .|||||||||+||++|+++|++|+|||||+|||+.++.++++.|+++++
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~  187 (240)
T d1ji0a_         113 EGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ  187 (240)
T ss_dssp             SHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhChHHHHhCchh-----hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh
Confidence            34566677788877 78888888665     5999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           83 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        83 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      +|+|||+++|+ ..++.++||||++|++|++++.|+++++.
T Consensus       188 ~g~til~~tH~-l~~~~~~~drv~vl~~G~iv~~g~~~el~  227 (240)
T d1ji0a_         188 EGTTILLVEQN-ALGALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             TTCCEEEEESC-HHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             CCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            99999999999 48999999999999999999999999874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=2.3e-26  Score=226.59  Aligned_cols=115  Identities=22%  Similarity=0.356  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009033            4 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD   83 (546)
Q Consensus         4 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~   83 (546)
                      ++..++++++++.+++.+.+|+.++     .|||||||||+|||+|+++|++|+|||||+|||+.++.++++.|++++++
T Consensus       125 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~  199 (254)
T d1g6ha_         125 EEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK  199 (254)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCcchhccCchh-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHC
Confidence            3456788899999999999998765     59999999999999999999999999999999999999999999999989


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           84 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        84 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      |+|||+++|+. .++.++||||++|++|++++.|++++..+
T Consensus       200 g~til~vsHdl-~~~~~~~Drv~vm~~G~iv~~g~~~e~~~  239 (254)
T d1g6ha_         200 GITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEEEIK  239 (254)
T ss_dssp             TCEEEEECSCC-STTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred             CCEEEEEeCcH-HHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence            99999999995 78999999999999999999999987543

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.6e-25  Score=215.14  Aligned_cols=113  Identities=28%  Similarity=0.439  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCeEEEeCCCCCCCHHHHHHHHHHH
Q 009033            5 EKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFLDEPTSGLDSAAAFFVTQTL   77 (546)
Q Consensus         5 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~-------~P~il~LDEPtsgLD~~~~~~v~~~L   77 (546)
                      .++++++++++.++|.+..++.+     +.|||||||||+||++|++       +|+||+|||||+|||+.++..+.+.+
T Consensus       101 ~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i  175 (231)
T d1l7vc_         101 TRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL  175 (231)
T ss_dssp             TCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            34677899999999999888855     4699999999999999997       77999999999999999999999999


Q ss_pred             HHHHhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHH
Q 009033           78 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF  123 (546)
Q Consensus        78 ~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~  123 (546)
                      ++++++|+|||+++|++ .++.++|||+++|++|++++.|+++++.
T Consensus       176 ~~l~~~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         176 SALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             HHHHHTTCEEEECCCCH-HHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred             HHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence            99999999999999995 7899999999999999999999998863

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=2.1e-24  Score=212.19  Aligned_cols=113  Identities=30%  Similarity=0.384  Sum_probs=96.8

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~~-------~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.++++++..++.+       -.|+.+|+ .+..|||||||||+|||+|+.+|+||+||||||+||+.+...+++.|+++
T Consensus       120 ~~i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l  198 (253)
T d3b60a1         120 EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL  198 (253)
T ss_dssp             HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHh
Confidence            34555555555433       35677775 56789999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+ |+|+|+++|++ +. .+.||+|++|++|++++.|+++++.+
T Consensus       199 ~~-~~Tvi~itH~l-~~-~~~~D~v~vl~~G~Iv~~G~~~eLl~  239 (253)
T d3b60a1         199 QK-NRTSLVIAHRL-ST-IEQADEIVVVEDGIIVERGTHSELLA  239 (253)
T ss_dssp             HT-TSEEEEECSCG-GG-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cc-CCEEEEEECCH-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence            75 79999999996 44 47899999999999999999998764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.1e-23  Score=205.26  Aligned_cols=101  Identities=31%  Similarity=0.554  Sum_probs=90.7

Q ss_pred             cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHH
Q 009033           20 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF   99 (546)
Q Consensus        20 ~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~   99 (546)
                      ..-.++.+|. ....|||||||||+|||+|+.+|+||+||||||+||+.+..++++.|+++.+ |+|+|++||++ +. .
T Consensus       126 ~~~~~t~i~~-~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~-~  201 (241)
T d2pmka1         126 REGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL-ST-V  201 (241)
T ss_dssp             TTGGGSBCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSG-GG-G
T ss_pred             hcchhhhcCC-CCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCH-HH-H
Confidence            4456777775 4678999999999999999999999999999999999999999999999975 89999999996 44 5


Q ss_pred             hhcCeEEEEeCCeEEEecChhHHHH
Q 009033          100 ELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus       100 ~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      +.+|+|++|++|+++..|+++++.+
T Consensus       202 ~~~D~i~vl~~G~Iv~~G~~~ell~  226 (241)
T d2pmka1         202 KNADRIIVMEKGKIVEQGKHKELLS  226 (241)
T ss_dssp             TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhCCEEEEEECCEEEEECCHHHHHh
Confidence            7899999999999999999998754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.8e-24  Score=207.85  Aligned_cols=104  Identities=30%  Similarity=0.398  Sum_probs=92.7

Q ss_pred             CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCch
Q 009033           18 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSS   96 (546)
Q Consensus        18 gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~   96 (546)
                      +|.+-.++.++. .+..||||||||++|||+|+.+|+||+||||||+||+.+..++++.|+++.+ .|+|+|+++|++ +
T Consensus       136 ~l~~g~~~~i~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~  213 (251)
T d1jj7a_         136 GLPQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL-S  213 (251)
T ss_dssp             TSTTGGGCBCCS-SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-H
T ss_pred             hccccchhhHhc-cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH-H
Confidence            444556777764 5678999999999999999999999999999999999999999999999976 589999999995 4


Q ss_pred             HHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           97 EVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        97 ~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      . .+.||||++|++|+++..|+++++.+
T Consensus       214 ~-~~~aDrI~vl~~G~iv~~Gt~~eLl~  240 (251)
T d1jj7a_         214 L-VEQADHILFLEGGAIREGGTHQQLME  240 (251)
T ss_dssp             H-HHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence            4 57799999999999999999998764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.89  E-value=1.7e-23  Score=205.66  Aligned_cols=113  Identities=28%  Similarity=0.386  Sum_probs=97.7

Q ss_pred             HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009033            8 TLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL   80 (546)
Q Consensus         8 ~~v~~~l~~lgL~-------~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l   80 (546)
                      +.+.++++..++.       +-.||.+|+ ....||||||||++|||+|+.+|+||+||||||+||+.+...+++.|+++
T Consensus       122 ~~~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l  200 (255)
T d2hyda1         122 EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL  200 (255)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence            4455666666654       345778875 45679999999999999999999999999999999999999999999998


Q ss_pred             HhCCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           81 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        81 ~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      .+ ++|+|++||++ +. .+.||+|++|++|+++..|+++++.+
T Consensus       201 ~~-~~TvI~itH~~-~~-~~~~D~ii~l~~G~iv~~G~~~eLl~  241 (255)
T d2hyda1         201 SK-DRTTLIVAHRL-ST-ITHADKIVVIENGHIVETGTHRELIA  241 (255)
T ss_dssp             TT-TSEEEEECSSG-GG-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             hc-CCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence            75 78999999997 44 57899999999999999999998765

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.89  E-value=5.7e-24  Score=207.73  Aligned_cols=102  Identities=32%  Similarity=0.523  Sum_probs=90.9

Q ss_pred             CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHH
Q 009033           19 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV   98 (546)
Q Consensus        19 L~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i   98 (546)
                      +.+..++.+|. ....||||||||++|||+|+.+|+||+||||||+||+.++.++++.|+++++ |+|||+++|++ +.+
T Consensus       125 ~~~~~~~~i~~-~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~  201 (242)
T d1mv5a_         125 MPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRL-STI  201 (242)
T ss_dssp             STTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSH-HHH
T ss_pred             CcccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC-CCEEEEEECCH-HHH
Confidence            34456777775 4567999999999999999999999999999999999999999999999974 89999999996 444


Q ss_pred             HhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           99 FELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        99 ~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                       ..||+|++|++|++++.|+++++.+
T Consensus       202 -~~~D~i~vl~~G~iv~~G~~~eLl~  226 (242)
T d1mv5a_         202 -VDADKIYFIEKGQITGSGKHNELVA  226 (242)
T ss_dssp             -HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred             -HhCCEEEEEECCEEEEECCHHHHHh
Confidence             6799999999999999999998765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.7e-22  Score=201.50  Aligned_cols=104  Identities=25%  Similarity=0.355  Sum_probs=88.9

Q ss_pred             CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchH
Q 009033           18 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE   97 (546)
Q Consensus        18 gL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~   97 (546)
                      .+.+..++.+|. ....|||||||||+|||+|+++|+||+|||||+|||+.+..++++.+......|+|+|+++|++  +
T Consensus       143 ~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~  219 (281)
T d1r0wa_         143 KFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--E  219 (281)
T ss_dssp             TSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--H
T ss_pred             hchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechH--H
Confidence            444556676764 4567999999999999999999999999999999999999999886544445689999999995  3


Q ss_pred             HHhhcCeEEEEeCCeEEEecChhHHHH
Q 009033           98 VFELFDRLYLLSGGKTVYFGETSAAFE  124 (546)
Q Consensus        98 i~~~~D~v~lL~~G~~v~~G~~~~~~~  124 (546)
                      ..+.||||++|++|+++++|+++++.+
T Consensus       220 ~l~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         220 HLRKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            567899999999999999999998754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.71  E-value=4.8e-18  Score=160.86  Aligned_cols=93  Identities=19%  Similarity=0.271  Sum_probs=75.5

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009033            8 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV   87 (546)
Q Consensus         8 ~~v~~~l~~lgL~~~~~~~ig~~~~~~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tv   87 (546)
                      +.+.+.++.+++.+.. +.+     ..||||||||++||++|+.+|++++|||||+|||+.++.++++.|+++.+++.++
T Consensus       105 ~~~~~~l~~~~~~~~~-~~~-----~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~  178 (200)
T d1sgwa_         105 NEIMDALESVEVLDLK-KKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV  178 (200)
T ss_dssp             HHHHHHHHHTTCCCTT-SBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEE
T ss_pred             HHHHHHHHHcCCcccc-ccc-----CcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEE
Confidence            4567788888876543 334     4699999999999999999999999999999999999999999999998754455


Q ss_pred             EEEecCCchHHHhhcCeEEEEeC
Q 009033           88 IASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        88 i~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      |+++|+.    .++||.+..|++
T Consensus       179 ii~~~~~----l~~~D~~~~l~~  197 (200)
T d1sgwa_         179 IISSREE----LSYCDVNENLHK  197 (200)
T ss_dssp             EEEESSC----CTTSSEEEEGGG
T ss_pred             EEEEech----hhhcchhhheee
Confidence            5555542    257999998864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=3.7e-09  Score=108.16  Aligned_cols=74  Identities=23%  Similarity=0.253  Sum_probs=64.0

Q ss_pred             CCCCHHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEE
Q 009033           33 RGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL  108 (546)
Q Consensus        33 ~~lSgGer~Rvsia~~l----~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL  108 (546)
                      ..+|||||.++++|.-+    ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+|  ++.+.+|+.+..
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V  408 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV  408 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence            56899999998887554    346679999999999999999999999999976667799999997  689999998765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=5.1e-06  Score=80.92  Aligned_cols=77  Identities=31%  Similarity=0.304  Sum_probs=65.1

Q ss_pred             cCCCCHHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEE
Q 009033           32 LRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL  107 (546)
Q Consensus        32 ~~~lSgGer~Rvsia~~l----~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~l  107 (546)
                      ...+|+|||+...++..+    ...|+++++|||-++|||.....+.+.|++.++ +.-||+|||.|  ++.+.+|++..
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~  293 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG  293 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH--HHHHhcccEEE
Confidence            456899999998887664    346789999999999999999999999999976 47899999987  57789999976


Q ss_pred             E--eCC
Q 009033          108 L--SGG  111 (546)
Q Consensus       108 L--~~G  111 (546)
                      +  .+|
T Consensus       294 v~~~~g  299 (308)
T d1e69a_         294 VTMVNG  299 (308)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence            4  455

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.97  E-value=9.1e-07  Score=79.12  Aligned_cols=80  Identities=14%  Similarity=0.064  Sum_probs=64.8

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 009033           34 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGK  112 (546)
Q Consensus        34 ~lSgGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~L~~l~~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~  112 (546)
                      .+|+|+++|..+++++..+|+++++|||..  +........+.+.++-+ .+.|+|+++|+.  ....++|++..+.+|+
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~--~~~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~  156 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIGK--MELFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAV  156 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCST--TGGGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCE
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCCc--cchhhHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCCE
Confidence            468999999999999999999999999844  33345566667766554 589999999984  4577899999999999


Q ss_pred             EEEec
Q 009033          113 TVYFG  117 (546)
Q Consensus       113 ~v~~G  117 (546)
                      ++.-+
T Consensus       157 i~~v~  161 (178)
T d1ye8a1         157 LIELT  161 (178)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            87654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.56  E-value=0.12  Score=47.21  Aligned_cols=64  Identities=20%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCchHHHhhc
Q 009033           37 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELF  102 (546)
Q Consensus        37 gGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~-~L~~l~~~g~tvi~~~H~p~~~i~~~~  102 (546)
                      ..|-+|++-....+++.+++++||+.+|-|+.....+.. .++.|.+.+..++++||..  ++.++.
T Consensus        99 ~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l~  163 (224)
T d1ewqa2          99 MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTALG  163 (224)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTCC
T ss_pred             HHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhhh
Confidence            467788877777778889999999999999998887755 5667887788999999984  565543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.66  E-value=0.27  Score=45.10  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCEEEEEecCC
Q 009033           37 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRD-GRTVIASIHQP   94 (546)
Q Consensus        37 gGer~Rvsia~~l~~~P~il~LDEPtsgLD~~~~~~v~~~-L~~l~~~-g~tvi~~~H~p   94 (546)
                      ..|-+|++=...-+++.+++++||+-+|=|+.....+... ++.+..+ +..+++++|..
T Consensus       105 ~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~  164 (234)
T d1wb9a2         105 MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF  164 (234)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred             HHHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence            5677887776677888889999999999999999888654 7778654 56888888874

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.67  E-value=0.53  Score=40.38  Aligned_cols=67  Identities=21%  Similarity=0.159  Sum_probs=51.1

Q ss_pred             HHHHHHHHhC--CCeEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCchHHHhhcCeEEEEeC
Q 009033           43 VSIALEILMR--PRLLFLDEPTS--GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG  110 (546)
Q Consensus        43 vsia~~l~~~--P~il~LDEPts--gLD~~~~~~v~~~L~~l~~~g~tvi~~~H~p~~~i~~~~D~v~lL~~  110 (546)
                      +..|++.+.+  .++++|||-..  .++-....+++++|++ ..++.-+|+|-+.++.++.+.+|-|.-|+.
T Consensus        83 ~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr~~p~~L~e~ADlVTEm~~  153 (157)
T d1g5ta_          83 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP  153 (157)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             HHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence            4556655544  69999999877  3344556678887765 346789999999999999999999987754