Citrus Sinensis ID: 009047


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-----
MDIFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSIGWLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIADANWNPDSEASVTGGYSIGFSMTVLQSECQQLICEILRATPEAASADAAVQTARLASKAPSKEKRQVTVVSYSIRT
cccccccccccHHHHHHHHHHHcHHHccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccHHHHHcccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHEEEEEEcccc
ccccccccccHHHHHHHHHHHHccHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHccccHHcccccccccccccccccEEEEccccHccccccHHHHHHHHHHHHHHHHHHHHHHccEEHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHHHHcccccccccEEEEEEEEEcc
mdifdglpispekAYLREELARIEVswvaprfdslphVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMhemddevpTTVAVAYTtnnsqplsrrtrlkgdnqfgvhgladgshsstfdghdedgsleahdetsldglsigwlanstpdEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAqtgttglhfmkgqlrsyqlpkqkrqngislsgtllavspvsalmapMGKAQAAAKELLDSILDSVVRIFENHVVVGELLesrssrhdintpksmiadanwnpdseasvtggySIGFSMTVLQSECQQLICEILRATPEAASADAAVQTARLaskapskekrqVTVVSYSIRT
mdifdglpispEKAYLREELARIEVSwvaprfdslPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKrrlgtrnkqlhqlwYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYttnnsqplsrrtrLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSIGWLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVgellesrssrhdintpksmiadanwnpdSEASVTGGYSIGFSMTVLQSECQQLICEILRATPEAASADAAVQTarlaskapskekrqvtvvsysirt
MDIFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNdiieevvdevvHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSIGWLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIADANWNPDSEASVTGGYSIGFSMTVLQSECQQLICEILRATPEAASADAAVQTARLASKAPSKEKRQVTVVSYSIRT
************KAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAY****************************************************GLSIGWLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINS****IG****TGTTGLHFMKGQL*************ISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELL***************************SVTGGYSIGFSMTVLQSECQQLICEILRAT************************************
*******************LARIEVSWVAPRFDSLPHVV*****************QNDIIEEVVDEVVHAYHTGFNKAIQNYSQIL*********************************LWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYS******************************************************************************************AIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAH***************************************************VSP****MAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELL************************SEASVTGGYSIGFSMTVLQSECQQLICEILRA******************************VSYS***
MDIFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSIGWLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIADANWNPDSEASVTGGYSIGFSMTVLQSECQQLICEILRATP***********************************
**IFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHE****************************************************************************PDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIADANWNPDS**SVTGGYSIGFSMTVLQSECQQLICEILRATPEAASADAAVQTARLASKAPSKEKRQVTVVSYSIRT
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MDIFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLxxxxxxxxxxxxxxxxxxxxxxxxxxxxLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSIGWLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIADANWNPDSEASVTGGYSIGFSMTVLQSECQQLICEILRATPEAASADAAVQTARLASKAPSKEKRQVTVVSYSIRT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query545 2.2.26 [Sep-21-2011]
Q93YU5 1053 Probable exocyst complex yes no 0.935 0.484 0.721 0.0
O35382 975 Exocyst complex component yes no 0.300 0.168 0.321 4e-17
Q96A65 974 Exocyst complex component yes no 0.388 0.217 0.297 4e-17
Q62824 975 Exocyst complex component yes no 0.300 0.168 0.321 4e-17
Q9HE88 1111 Probable exocyst complex N/A no 0.315 0.154 0.290 3e-15
Q54P76 1182 Exocyst complex component yes no 0.377 0.174 0.253 4e-14
Q9VNH6 985 Exocyst complex component yes no 0.297 0.164 0.280 2e-10
P32855 1065 Exocyst complex component yes no 0.357 0.183 0.228 3e-06
Q9XWS2 893 Exocyst complex component yes no 0.256 0.156 0.212 0.0007
>sp|Q93YU5|EXOC4_ARATH Probable exocyst complex component 4 OS=Arabidopsis thaliana GN=SEC8 PE=1 SV=1 Back     alignment and function desciption
 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/532 (72%), Positives = 445/532 (83%), Gaps = 22/532 (4%)

Query: 1   MDIFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDI 60
           M IF+GLP+  +K YLREELARI+ SW A RFDSLPHVVHILTSKDRE ++ ILK+Q+D+
Sbjct: 1   MGIFNGLPVPSDKTYLREELARIDESWAAARFDSLPHVVHILTSKDREADIHILKEQSDV 60

Query: 61  IEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ 120
           +EEVVDEVVHAYH GFNKAIQNYSQILRLFSES E I +LK DLAEAK+ LG RNKQLHQ
Sbjct: 61  VEEVVDEVVHAYHGGFNKAIQNYSQILRLFSESTEKIGDLKHDLAEAKQSLGARNKQLHQ 120

Query: 121 LWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVG 180
           LWYRSVTLRHIISLLDQIEGIAKVP+RIEKLIA KQ+YAA+Q++ QS+LMLEREGLQTVG
Sbjct: 121 LWYRSVTLRHIISLLDQIEGIAKVPSRIEKLIADKQFYAAIQVYLQSSLMLEREGLQTVG 180

Query: 181 ALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNN 240
           ALQDVRSELTKLRG LF+K+L+DLHAHLYNRGEYSS   S++E DDEVPTT AVA +  +
Sbjct: 181 ALQDVRSELTKLRGALFFKILDDLHAHLYNRGEYSSVASSIYERDDEVPTTTAVAASRMS 240

Query: 241 SQPLSRRTR-LKGDNQFGVHGLADGSH-------SSTFDGHDEDGSLEAHDETSLDGLSI 292
           SQPLSRRTR LKGD+QFGV GL +GS+       SS+FDGHDE+ S+E HDE++ D    
Sbjct: 241 SQPLSRRTRTLKGDSQFGVRGLTNGSYRTASNDESSSFDGHDEEDSVE-HDESTADTARN 299

Query: 293 G------------WLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGKVAAAGAIIC 340
           G            WL++STPDEF+EA+RKSD PLHVKYLQT+V+CLC+LGKVAAAGAIIC
Sbjct: 300 GTDSKLLSHQLPPWLSDSTPDEFIEAVRKSDDPLHVKYLQTLVQCLCMLGKVAAAGAIIC 359

Query: 341 QRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNG 400
           Q+LRPTIHEII SKIKAH +  N S+SA  Q  ++   GLH +KGQ  +Y+L K+K QNG
Sbjct: 360 QKLRPTIHEIIISKIKAHLETTNLSKSACSQGDRSVAAGLHLIKGQSEAYRLSKEKPQNG 419

Query: 401 ISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHD 460
           IS SGT LAVSPVS LMAP GKAQAAAKELLDSILD++V+IFENHVV+GELLE ++S+HD
Sbjct: 420 ISNSGTHLAVSPVSPLMAPGGKAQAAAKELLDSILDTIVKIFENHVVIGELLEMKASQHD 479

Query: 461 INTPKSMIADANWNPDSEAS-VTGGYSIGFSMTVLQSECQQLICEILRATPE 511
           INTP+S+  D NWN +SEAS  TGGY+I F +TVLQSECQQLICEILRATPE
Sbjct: 480 INTPRSLPTDVNWNTESEASQATGGYTISFPLTVLQSECQQLICEILRATPE 531




Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
Arabidopsis thaliana (taxid: 3702)
>sp|O35382|EXOC4_MOUSE Exocyst complex component 4 OS=Mus musculus GN=Exoc4 PE=1 SV=2 Back     alignment and function description
>sp|Q96A65|EXOC4_HUMAN Exocyst complex component 4 OS=Homo sapiens GN=EXOC4 PE=1 SV=1 Back     alignment and function description
>sp|Q62824|EXOC4_RAT Exocyst complex component 4 OS=Rattus norvegicus GN=Exoc4 PE=1 SV=1 Back     alignment and function description
>sp|Q9HE88|SEC8_NEUCR Probable exocyst complex component sec8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec-8 PE=3 SV=1 Back     alignment and function description
>sp|Q54P76|EXOC4_DICDI Exocyst complex component 4 OS=Dictyostelium discoideum GN=exoc4 PE=3 SV=1 Back     alignment and function description
>sp|Q9VNH6|EXOC4_DROME Exocyst complex component 4 OS=Drosophila melanogaster GN=sec8 PE=1 SV=3 Back     alignment and function description
>sp|P32855|SEC8_YEAST Exocyst complex component SEC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC8 PE=1 SV=1 Back     alignment and function description
>sp|Q9XWS2|EXOC4_CAEEL Exocyst complex component 4 OS=Caenorhabditis elegans GN=sec-8 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query545
296085980 1084 unnamed protein product [Vitis vinifera] 0.979 0.492 0.776 0.0
225448968 1076 PREDICTED: probable exocyst complex comp 0.979 0.496 0.776 0.0
356533947 1066 PREDICTED: probable exocyst complex comp 0.968 0.495 0.760 0.0
356574621 1065 PREDICTED: probable exocyst complex comp 0.966 0.494 0.751 0.0
255550688 646 exocyst componenet sec8, putative [Ricin 0.972 0.820 0.761 0.0
224113089 1084 predicted protein [Populus trichocarpa] 0.954 0.479 0.749 0.0
224097788 1087 predicted protein [Populus trichocarpa] 0.963 0.482 0.745 0.0
449490429 1073 PREDICTED: probable exocyst complex comp 0.974 0.494 0.715 0.0
449444630 1073 PREDICTED: probable exocyst complex comp 0.974 0.494 0.715 0.0
297833818 1053 hypothetical protein ARALYDRAFT_897214 [ 0.954 0.493 0.721 0.0
>gi|296085980|emb|CBI31421.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/564 (77%), Positives = 486/564 (86%), Gaps = 30/564 (5%)

Query: 1   MDIFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDI 60
           M  FDGLPISPEK+YLRE+L+RI+ SW A RFDSLPHVVHILTSKDREGE Q LK+Q+DI
Sbjct: 1   MGTFDGLPISPEKSYLREDLSRIDESWAAARFDSLPHVVHILTSKDREGEAQFLKEQSDI 60

Query: 61  IEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ 120
           IEEVVDEVVHAYH+GFNKAIQNYSQILRLFSESA SI  LKVDLA+AK+ LG RNKQLHQ
Sbjct: 61  IEEVVDEVVHAYHSGFNKAIQNYSQILRLFSESAASISVLKVDLADAKKLLGARNKQLHQ 120

Query: 121 LWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVG 180
           LWYRSVTLRHII+LLDQ+EGIAKVPARIEKLIA KQ+YAAVQLHAQS LMLEREGLQTVG
Sbjct: 121 LWYRSVTLRHIIALLDQVEGIAKVPARIEKLIAEKQFYAAVQLHAQSTLMLEREGLQTVG 180

Query: 181 ALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNN 240
           ALQDVRSELTKLRG++FYK+LEDLHAHLYN+GEYSSA  S+HE DDEVPTT AVA++ N+
Sbjct: 181 ALQDVRSELTKLRGIIFYKILEDLHAHLYNKGEYSSAASSIHERDDEVPTTTAVAFSMNS 240

Query: 241 SQPLSRRTR-LKGDNQFGVHGLADGSH------SSTFDGHDEDGSLEAHDETSLDGLSI- 292
           SQPLSRRTR LKGDNQFGV GL DG         S+FDGHDE+G+LE HDE +LDG +  
Sbjct: 241 SQPLSRRTRLLKGDNQFGVLGLGDGYRPGSIDGGSSFDGHDEEGALELHDEATLDGYNAI 300

Query: 293 ---------------------GWLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGK 331
                                 WL+ +TPDEF+E+++KSDAPLHVKYLQTMVECLC+LGK
Sbjct: 301 TKVNGGDGSQKDIKIVSHQIPPWLSYATPDEFLESMKKSDAPLHVKYLQTMVECLCMLGK 360

Query: 332 VAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQ 391
           VAAAGA+ICQRLRPTIHEIITSKIKAHA+L+NS+RS I +AA T TTGLH++KGQL SYQ
Sbjct: 361 VAAAGAMICQRLRPTIHEIITSKIKAHAELVNSTRSGICRAAHTATTGLHYLKGQLESYQ 420

Query: 392 LPKQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGEL 451
            PKQKRQNGISL+GTLLAVSPVS +MAP G AQ AAKELLDSILD VVRIFENHVVVGEL
Sbjct: 421 SPKQKRQNGISLAGTLLAVSPVSPVMAPAGTAQTAAKELLDSILDIVVRIFENHVVVGEL 480

Query: 452 LESRSSRHDINTPKSMIADANWNPDSEAS-VTGGYSIGFSMTVLQSECQQLICEILRATP 510
           LES+ ++ D+NTPKS+  + NWN DSEAS VTGGYSIGFS+TVLQSECQQLICEILRATP
Sbjct: 481 LESKGTQVDMNTPKSVTVEVNWNHDSEASQVTGGYSIGFSLTVLQSECQQLICEILRATP 540

Query: 511 EAASADAAVQTARLASKAPSKEKR 534
           EAASADA VQTARLASKAPSKEKR
Sbjct: 541 EAASADATVQTARLASKAPSKEKR 564




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448968|ref|XP_002269663.1| PREDICTED: probable exocyst complex component 4-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356533947|ref|XP_003535519.1| PREDICTED: probable exocyst complex component 4-like [Glycine max] Back     alignment and taxonomy information
>gi|356574621|ref|XP_003555444.1| PREDICTED: probable exocyst complex component 4-like [Glycine max] Back     alignment and taxonomy information
>gi|255550688|ref|XP_002516393.1| exocyst componenet sec8, putative [Ricinus communis] gi|223544491|gb|EEF46010.1| exocyst componenet sec8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224113089|ref|XP_002316388.1| predicted protein [Populus trichocarpa] gi|222865428|gb|EEF02559.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224097788|ref|XP_002311074.1| predicted protein [Populus trichocarpa] gi|222850894|gb|EEE88441.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449490429|ref|XP_004158603.1| PREDICTED: probable exocyst complex component 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449444630|ref|XP_004140077.1| PREDICTED: probable exocyst complex component 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297833818|ref|XP_002884791.1| hypothetical protein ARALYDRAFT_897214 [Arabidopsis lyrata subsp. lyrata] gi|297330631|gb|EFH61050.1| hypothetical protein ARALYDRAFT_897214 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query545
TAIR|locus:2076249 1053 SEC8 "subunit of exocyst compl 0.526 0.272 0.722 1.4e-207
UNIPROTKB|D4A9S7404 Exoc4 "Exocyst complex compone 0.300 0.405 0.309 2.7e-15
UNIPROTKB|F1SNF7387 LOC100511293 "Uncharacterized 0.475 0.669 0.269 4.9e-15
UNIPROTKB|E9PED2473 EXOC4 "Exocyst complex compone 0.388 0.448 0.288 5.7e-15
UNIPROTKB|Q96A65 974 EXOC4 "Exocyst complex compone 0.388 0.217 0.288 2.2e-14
UNIPROTKB|A6QLD1 975 EXOC4 "EXOC4 protein" [Bos tau 0.471 0.263 0.271 7.7e-14
RGD|621791 975 Exoc4 "exocyst complex compone 0.300 0.168 0.309 9.4e-14
UNIPROTKB|Q62824 975 Exoc4 "Exocyst complex compone 0.300 0.168 0.309 9.4e-14
UNIPROTKB|F1PMM8 975 EXOC4 "Uncharacterized protein 0.473 0.264 0.264 1.3e-13
UNIPROTKB|E1BUN2 976 EXOC4 "Uncharacterized protein 0.471 0.263 0.269 1.6e-13
TAIR|locus:2076249 SEC8 "subunit of exocyst complex 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1065 (380.0 bits), Expect = 1.4e-207, Sum P(2) = 1.4e-207
 Identities = 214/296 (72%), Positives = 245/296 (82%)

Query:     1 MDIFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNXX 60
             M IF+GLP+  +K YLREELARI+ SW A RFDSLPHVVHILTSKDRE ++ ILK+Q+  
Sbjct:     1 MGIFNGLPVPSDKTYLREELARIDESWAAARFDSLPHVVHILTSKDREADIHILKEQSDV 60

Query:    61 XXXXXXXXXHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ 120
                      HAYH GFNKAIQNYSQILRLFSES E I +LK DLAEAK+ LG RNKQLHQ
Sbjct:    61 VEEVVDEVVHAYHGGFNKAIQNYSQILRLFSESTEKIGDLKHDLAEAKQSLGARNKQLHQ 120

Query:   121 LWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVG 180
             LWYRSVTLRHIISLLDQIEGIAKVP+RIEKLIA KQ+YAA+Q++ QS+LMLEREGLQTVG
Sbjct:   121 LWYRSVTLRHIISLLDQIEGIAKVPSRIEKLIADKQFYAAIQVYLQSSLMLEREGLQTVG 180

Query:   181 ALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNN 240
             ALQDVRSELTKLRG LF+K+L+DLHAHLYNRGEYSS   S++E DDEVPTT AVA +  +
Sbjct:   181 ALQDVRSELTKLRGALFFKILDDLHAHLYNRGEYSSVASSIYERDDEVPTTTAVAASRMS 240

Query:   241 SQPLSRRTR-LKGDNQFGVHGLADGSH-------SSTFDGHDEDGSLEAHDETSLD 288
             SQPLSRRTR LKGD+QFGV GL +GS+       SS+FDGHDE+ S+E HDE++ D
Sbjct:   241 SQPLSRRTRTLKGDSQFGVRGLTNGSYRTASNDESSSFDGHDEEDSVE-HDESTAD 295


GO:0000145 "exocyst" evidence=IEA;IDA
GO:0005634 "nucleus" evidence=ISM
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0009846 "pollen germination" evidence=IGI
GO:0009860 "pollen tube growth" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
GO:0048354 "mucilage biosynthetic process involved in seed coat development" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
UNIPROTKB|D4A9S7 Exoc4 "Exocyst complex component 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNF7 LOC100511293 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E9PED2 EXOC4 "Exocyst complex component 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96A65 EXOC4 "Exocyst complex component 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLD1 EXOC4 "EXOC4 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621791 Exoc4 "exocyst complex component 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q62824 Exoc4 "Exocyst complex component 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PMM8 EXOC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUN2 EXOC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93YU5EXOC4_ARATHNo assigned EC number0.72180.93570.4843yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query545
pfam04048142 pfam04048, Sec8_exocyst, Sec8 exocyst complex comp 8e-43
>gnl|CDD|202865 pfam04048, Sec8_exocyst, Sec8 exocyst complex component specific domain Back     alignment and domain information
 Score =  149 bits (378), Expect = 8e-43
 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 15  YLREELARIEVSWVAPRFDSLPHVVHILTSKDREG-----EVQILKDQNDIIEEVVDEVV 69
            L+E L  I+  W     D    V   L   D             +     IE+ + EVV
Sbjct: 1   KLKEVLNTIKYEWPQVLSDDANPVELALQLLDDTSVGLAHRYPEFEQLKKRIEQALQEVV 60

Query: 70  HAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLR 129
           + +H GFN +I +Y +IL   + S E I++LK  L EAK+ LGTR  +L +L  RS   +
Sbjct: 61  NEHHQGFNSSIGSYHKILSSITSSQERIRQLKESLEEAKKLLGTRKPELKELNQRSQKYK 120

Query: 130 HIISLLDQIEGIAKVPARIEKL 151
            +I LLD IE + KVP ++E+L
Sbjct: 121 EMIELLDAIEELRKVPDKLEQL 142


Length = 142

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 545
KOG3691 982 consensus Exocyst complex subunit Sec8 [Intracellu 100.0
PF04048142 Sec8_exocyst: Sec8 exocyst complex component speci 100.0
PF10475291 DUF2450: Protein of unknown function N-terminal do 99.73
KOG2115 951 consensus Vacuolar sorting protein VPS45 [Intracel 99.31
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 98.14
PF15469182 Sec5: Exocyst complex component Sec5 98.08
PF04100383 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 97.98
PF04124338 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 97.78
KOG2176 800 consensus Exocyst complex, subunit SEC15 [Intracel 97.4
PF10392132 COG5: Golgi transport complex subunit 5; InterPro: 97.18
PF06148133 COG2: COG (conserved oligomeric Golgi) complex com 97.11
KOG2180 793 consensus Late Golgi protein sorting complex, subu 96.58
KOG2069581 consensus Golgi transport complex subunit [Intrace 96.21
KOG2346636 consensus Uncharacterized conserved protein [Funct 95.41
PF0870087 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te 94.3
PF10191 766 COG7: Golgi complex component 7 (COG7); InterPro: 93.84
KOG2307 705 consensus Low density lipoprotein receptor [Intrac 91.53
KOG0412 773 consensus Golgi transport complex COD1 protein [In 89.77
PF09763 701 Sec3_C: Exocyst complex component Sec3; InterPro: 89.54
KOG1961 683 consensus Vacuolar sorting protein VPS52/suppresso 85.68
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
Probab=100.00  E-value=1.3e-45  Score=406.26  Aligned_cols=368  Identities=23%  Similarity=0.248  Sum_probs=284.8

Q ss_pred             HHHHHHHhHhhhCCCCCCchhHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009047           16 LREELARIEVSWVAPRFDSLPHVVHILTS--KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES   93 (545)
Q Consensus        16 l~evL~~I~~eW~~~~fd~l~~vl~lLss--~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~S   93 (545)
                      ..+...+|...|.           .+.+.  .+||.++++|++.++..+.+|+++|++|+|+|++.|.+|++|++.|+.|
T Consensus        26 sn~~G~lInvi~n-----------L~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~   94 (982)
T KOG3691|consen   26 SNELGLLINVIRN-----------LVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNC   94 (982)
T ss_pred             ccccchhhhHHHh-----------hccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666           33332  3899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcc
Q 009047           94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER  173 (545)
Q Consensus        94 q~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~  173 (545)
                      |++|.+||++|.+||++|+|+|++|++||.++.+|++||++|++||+++++|++||.+|++|+|++|.++|.+++.++++
T Consensus        95 rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng  174 (982)
T KOG3691|consen   95 RERIHNVKNNLEACKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNG  174 (982)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCCcccccccccccCCCCccchhcccccCCCCCccccccccCC
Q 009047          174 EGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGD  253 (545)
Q Consensus       174 ~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~lYlK~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~q~~~~~t~~~~~  253 (545)
                      + |.+|..|+|||++|+.+++.|+++|+||||+++|.|+....-. + +-+.+                |++        
T Consensus       175 ~-L~~VEgLs~l~~ele~~~~~L~~~L~eELv~ily~ks~~~~l~-~-~~~~~----------------~~~--------  227 (982)
T KOG3691|consen  175 P-LDGVEGLSDLRSELEGLLSHLEDILIEELVSILYLKSVAYPLV-S-YCRTN----------------PLS--------  227 (982)
T ss_pred             c-chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHH-h-hhcCC----------------chh--------
Confidence            6 9999999999999999999999999999999999997531110 0 00111                111        


Q ss_pred             CCCCccccCCCCCCc-cCCCCCCCCCccccccccccccccccc-----cCC----Cch--HHHHHhhcC-CcchhHHHHH
Q 009047          254 NQFGVHGLADGSHSS-TFDGHDEDGSLEAHDETSLDGLSIGWL-----ANS----TPD--EFVEAIRKS-DAPLHVKYLQ  320 (545)
Q Consensus       254 ~q~~~~~~~~~~~sl-~~~~~~~~~~~~~~d~~~~s~~i~~fl-----s~~----~~~--~~~ed~~~n-~~~~sf~Yi~  320 (545)
                                  +.+ +|.     ||.++.+....++.+-+-+     ++.    +.+  ...+++.-. |++.+-.+..
T Consensus       228 ------------s~l~~~~-----~~~in~t~l~~sr~~~ea~~~k~~~g~~sv~~~~~~~~~~~l~~~~pe~~sslf~~  290 (982)
T KOG3691|consen  228 ------------SRLNDFL-----YNNINTTTLGTSRQLLEALCHKSDAGSGSVRDIRIVLEKEDLLLSLPEANSSLFRR  290 (982)
T ss_pred             ------------hHHHHHh-----hcccCccccCccHHHHHHHHHHhhcCCcchhhHHHHHhhccccccchhhHHHHHHH
Confidence                        111 222     3444444333333331110     000    000  111222223 6667777888


Q ss_pred             HHHHHHHhhCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcchhhhccccccCccccccccccccccccccccccCC
Q 009047          321 TMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNG  400 (545)
Q Consensus       321 ~llesL~~LgKL~~Al~~i~qRl~~Elh~lV~~ti~e~~~~~~~s~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  400 (545)
                      .+++.++++.|+|.++.+|..|+.+|++++|.+++..+....+..+                           +..+ + 
T Consensus       291 il~k~~~~~~k~p~~~n~i~~~~~~el~niv~kSt~~i~~~g~~~~---------------------------e~at-~-  341 (982)
T KOG3691|consen  291 ILEKFTTVDSKSPAIVNKISERINVELVNIVSKSTYDISLSGETDR---------------------------EHAT-F-  341 (982)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccchhhhccccchh---------------------------hhhh-c-
Confidence            9999999999999999999999999999999776665542222100                           0000 0 


Q ss_pred             cccccccccccccccccCcCCchHHHHHHHHHHHHHHHHHHHhhhHHHHH------HHHHhhccCCCCCCcccccCCCCC
Q 009047          401 ISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGE------LLESRSSRHDINTPKSMIADANWN  474 (545)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~il~el~~slf~k~~avle~h~vv~e------v~~~~~~r~~~~~~~~~~~~~~~~  474 (545)
                                          +...-+|.++||-||.||.++.+.|+++.+      ++....++.               
T Consensus       342 --------------------~tn~f~L~ell~~if~kf~a~aq~Ha~~~~~s~~~~vv~P~~sq~---------------  386 (982)
T KOG3691|consen  342 --------------------DTNHFMLLELLEEIFTKFEAAAQKHASSLHKSLQNDVVSPKVSQK---------------  386 (982)
T ss_pred             --------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCC---------------
Confidence                                112239999999999999999999999998      444443332               


Q ss_pred             CCCCcccccCcchhhhhHHHHHHHHHHHHHHhhcCc
Q 009047          475 PDSEASVTGGYSIGFSMTVLQSECQQLICEILRATP  510 (545)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~qsE~~~Ll~~yl~~~~  510 (545)
                              ..|.+..+|..+|+|++-|+-+||-..+
T Consensus       387 --------d~f~~~~~W~k~qs~ielllsE~i~~nn  414 (982)
T KOG3691|consen  387 --------DTFDFTDFWQKAQSEIELLLSEYIDNNN  414 (982)
T ss_pred             --------CcccHHHHHHHHHHHHHHHHHHHhccCC
Confidence                    1478899999999999999999996543



>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known Back     alignment and domain information
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>PF15469 Sec5: Exocyst complex component Sec5 Back     alignment and domain information
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] Back     alignment and domain information
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking Back     alignment and domain information
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex Back     alignment and domain information
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2346 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8 Back     alignment and domain information
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query545
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 77/595 (12%), Positives = 180/595 (30%), Gaps = 146/595 (24%)

Query: 3   IFDGLPISPEKAYLR--EELARIEVSWVAPRFD------SLPHVVHILTSKDR-EGEVQI 53
           +F  L    E+   +  EE+ RI   ++           S+   ++I   +DR   + Q+
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQV 125

Query: 54  LKDQNDIIEEVVDE--------------VVHAYHTGFNKAIQNYSQILRLFSESAESIKE 99
               N    +   +              ++     G  K        +     + +    
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-LGSGK------TWV-----ALDVCLS 173

Query: 100 LKVDLAEAKR----RLGTRNK---QLHQLWYRSVTLRHII--SLLDQIEGIAKVPARIEK 150
            KV      +     L   N     L  L      L + I  +   + +  + +  RI  
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 151 LIAGKQYYAAVQLHAQSALMLEREGLQTVGALQ--DVRSEL---TKLRGVL--------F 197
           + A  +     + +    L+L    +Q   A    ++  ++   T+ + V          
Sbjct: 230 IQAELRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 198 YKVLEDLHAHLYNRGEYSSAVLS--MHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQ 255
           +  L+     L    +   ++L   +     ++P       TTN   P            
Sbjct: 288 HISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLP---REVLTTN---PRR---------- 329

Query: 256 FGVHGLADGSHSSTFDG--HDEDGSLEAHDETSLDGLSIGWLANSTPDEFVE-----AIR 308
             +   +     +T+D   H     L    E+SL+ L         P E+ +     ++ 
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--------PAEYRKMFDRLSVF 381

Query: 309 KSDAPLHVKYLQTM------VECLCILGKVAAAGAIICQRLRPT--IHEI-------ITS 353
              A +    L  +       + + ++ K+     +  Q    T  I  I       + +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 354 KIKAHAQLINSSRSAIGQAAQTGTTGLHFMKG---QLRSYQLPKQKRQNGISL-SGTLLA 409
           +   H  +++     I +   +      ++         + L   +    ++L     L 
Sbjct: 442 EYALHRSIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 410 VSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIA 469
              +   +     A  A+  +L+++    ++ ++ ++            +D    + ++ 
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQ--LKFYKPYI----------CDND-PKYERLVN 546

Query: 470 D-ANWNPDSEASVTGGYSIGFSMTVLQSECQQLICEILRATPEAASADAAVQTAR 523
              ++ P  E +            ++ S+   L+   L A  EA   +A  Q  R
Sbjct: 547 AILDFLPKIEEN------------LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query545
2d2s_A235 Exocyst complex component EXO84; tethering complex 94.47
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2 Back     alignment and structure
Probab=94.47  E-value=0.085  Score=51.84  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=57.7

Q ss_pred             HhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCC----CCcCccHHHHHHHHHhHHHHHHHHHHHHH
Q 009047          136 DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGL----QTVGALQDVRSELTKLRGVLFYKVLEDLH  205 (545)
Q Consensus       136 d~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL----~~I~AL~dLR~~L~~qe~~L~d~LiEELh  205 (545)
                      +.+..+...|+.|+-+|++++|.+|++++.++-..+.+-.-    .+..++..++..+.+++..|.+.|++||.
T Consensus        13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~   86 (235)
T 2d2s_A           13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL   86 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667778999999999999999999999999998865221    12456778999999999999999999983




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query545
d2d2sa1229 Exocyst complex component EXO84 {Baker's yeast (Sa 91.18
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.18  E-value=0.25  Score=45.71  Aligned_cols=70  Identities=13%  Similarity=0.100  Sum_probs=51.4

Q ss_pred             HhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHccc----CCCCcCccHHHHHHHHHhHHHHHHHHHHHHH
Q 009047          136 DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE----GLQTVGALQDVRSELTKLRGVLFYKVLEDLH  205 (545)
Q Consensus       136 d~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~----eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh  205 (545)
                      ..|+.|...|+.++..|++++|.+|++++..+-..+.+-    ....+..+..++..+.+.+..|.+.|..+|.
T Consensus         7 ~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~   80 (229)
T d2d2sa1           7 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL   80 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457788899999999999999999999998877766542    1223334455777777877777777766663