Citrus Sinensis ID: 009047
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 545 | ||||||
| 296085980 | 1084 | unnamed protein product [Vitis vinifera] | 0.979 | 0.492 | 0.776 | 0.0 | |
| 225448968 | 1076 | PREDICTED: probable exocyst complex comp | 0.979 | 0.496 | 0.776 | 0.0 | |
| 356533947 | 1066 | PREDICTED: probable exocyst complex comp | 0.968 | 0.495 | 0.760 | 0.0 | |
| 356574621 | 1065 | PREDICTED: probable exocyst complex comp | 0.966 | 0.494 | 0.751 | 0.0 | |
| 255550688 | 646 | exocyst componenet sec8, putative [Ricin | 0.972 | 0.820 | 0.761 | 0.0 | |
| 224113089 | 1084 | predicted protein [Populus trichocarpa] | 0.954 | 0.479 | 0.749 | 0.0 | |
| 224097788 | 1087 | predicted protein [Populus trichocarpa] | 0.963 | 0.482 | 0.745 | 0.0 | |
| 449490429 | 1073 | PREDICTED: probable exocyst complex comp | 0.974 | 0.494 | 0.715 | 0.0 | |
| 449444630 | 1073 | PREDICTED: probable exocyst complex comp | 0.974 | 0.494 | 0.715 | 0.0 | |
| 297833818 | 1053 | hypothetical protein ARALYDRAFT_897214 [ | 0.954 | 0.493 | 0.721 | 0.0 |
| >gi|296085980|emb|CBI31421.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/564 (77%), Positives = 486/564 (86%), Gaps = 30/564 (5%)
Query: 1 MDIFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDI 60
M FDGLPISPEK+YLRE+L+RI+ SW A RFDSLPHVVHILTSKDREGE Q LK+Q+DI
Sbjct: 1 MGTFDGLPISPEKSYLREDLSRIDESWAAARFDSLPHVVHILTSKDREGEAQFLKEQSDI 60
Query: 61 IEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ 120
IEEVVDEVVHAYH+GFNKAIQNYSQILRLFSESA SI LKVDLA+AK+ LG RNKQLHQ
Sbjct: 61 IEEVVDEVVHAYHSGFNKAIQNYSQILRLFSESAASISVLKVDLADAKKLLGARNKQLHQ 120
Query: 121 LWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVG 180
LWYRSVTLRHII+LLDQ+EGIAKVPARIEKLIA KQ+YAAVQLHAQS LMLEREGLQTVG
Sbjct: 121 LWYRSVTLRHIIALLDQVEGIAKVPARIEKLIAEKQFYAAVQLHAQSTLMLEREGLQTVG 180
Query: 181 ALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNN 240
ALQDVRSELTKLRG++FYK+LEDLHAHLYN+GEYSSA S+HE DDEVPTT AVA++ N+
Sbjct: 181 ALQDVRSELTKLRGIIFYKILEDLHAHLYNKGEYSSAASSIHERDDEVPTTTAVAFSMNS 240
Query: 241 SQPLSRRTR-LKGDNQFGVHGLADGSH------SSTFDGHDEDGSLEAHDETSLDGLSI- 292
SQPLSRRTR LKGDNQFGV GL DG S+FDGHDE+G+LE HDE +LDG +
Sbjct: 241 SQPLSRRTRLLKGDNQFGVLGLGDGYRPGSIDGGSSFDGHDEEGALELHDEATLDGYNAI 300
Query: 293 ---------------------GWLANSTPDEFVEAIRKSDAPLHVKYLQTMVECLCILGK 331
WL+ +TPDEF+E+++KSDAPLHVKYLQTMVECLC+LGK
Sbjct: 301 TKVNGGDGSQKDIKIVSHQIPPWLSYATPDEFLESMKKSDAPLHVKYLQTMVECLCMLGK 360
Query: 332 VAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQ 391
VAAAGA+ICQRLRPTIHEIITSKIKAHA+L+NS+RS I +AA T TTGLH++KGQL SYQ
Sbjct: 361 VAAAGAMICQRLRPTIHEIITSKIKAHAELVNSTRSGICRAAHTATTGLHYLKGQLESYQ 420
Query: 392 LPKQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGEL 451
PKQKRQNGISL+GTLLAVSPVS +MAP G AQ AAKELLDSILD VVRIFENHVVVGEL
Sbjct: 421 SPKQKRQNGISLAGTLLAVSPVSPVMAPAGTAQTAAKELLDSILDIVVRIFENHVVVGEL 480
Query: 452 LESRSSRHDINTPKSMIADANWNPDSEAS-VTGGYSIGFSMTVLQSECQQLICEILRATP 510
LES+ ++ D+NTPKS+ + NWN DSEAS VTGGYSIGFS+TVLQSECQQLICEILRATP
Sbjct: 481 LESKGTQVDMNTPKSVTVEVNWNHDSEASQVTGGYSIGFSLTVLQSECQQLICEILRATP 540
Query: 511 EAASADAAVQTARLASKAPSKEKR 534
EAASADA VQTARLASKAPSKEKR
Sbjct: 541 EAASADATVQTARLASKAPSKEKR 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225448968|ref|XP_002269663.1| PREDICTED: probable exocyst complex component 4-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356533947|ref|XP_003535519.1| PREDICTED: probable exocyst complex component 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356574621|ref|XP_003555444.1| PREDICTED: probable exocyst complex component 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255550688|ref|XP_002516393.1| exocyst componenet sec8, putative [Ricinus communis] gi|223544491|gb|EEF46010.1| exocyst componenet sec8, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224113089|ref|XP_002316388.1| predicted protein [Populus trichocarpa] gi|222865428|gb|EEF02559.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224097788|ref|XP_002311074.1| predicted protein [Populus trichocarpa] gi|222850894|gb|EEE88441.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449490429|ref|XP_004158603.1| PREDICTED: probable exocyst complex component 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449444630|ref|XP_004140077.1| PREDICTED: probable exocyst complex component 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|297833818|ref|XP_002884791.1| hypothetical protein ARALYDRAFT_897214 [Arabidopsis lyrata subsp. lyrata] gi|297330631|gb|EFH61050.1| hypothetical protein ARALYDRAFT_897214 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 545 | ||||||
| TAIR|locus:2076249 | 1053 | SEC8 "subunit of exocyst compl | 0.526 | 0.272 | 0.722 | 1.4e-207 | |
| UNIPROTKB|D4A9S7 | 404 | Exoc4 "Exocyst complex compone | 0.300 | 0.405 | 0.309 | 2.7e-15 | |
| UNIPROTKB|F1SNF7 | 387 | LOC100511293 "Uncharacterized | 0.475 | 0.669 | 0.269 | 4.9e-15 | |
| UNIPROTKB|E9PED2 | 473 | EXOC4 "Exocyst complex compone | 0.388 | 0.448 | 0.288 | 5.7e-15 | |
| UNIPROTKB|Q96A65 | 974 | EXOC4 "Exocyst complex compone | 0.388 | 0.217 | 0.288 | 2.2e-14 | |
| UNIPROTKB|A6QLD1 | 975 | EXOC4 "EXOC4 protein" [Bos tau | 0.471 | 0.263 | 0.271 | 7.7e-14 | |
| RGD|621791 | 975 | Exoc4 "exocyst complex compone | 0.300 | 0.168 | 0.309 | 9.4e-14 | |
| UNIPROTKB|Q62824 | 975 | Exoc4 "Exocyst complex compone | 0.300 | 0.168 | 0.309 | 9.4e-14 | |
| UNIPROTKB|F1PMM8 | 975 | EXOC4 "Uncharacterized protein | 0.473 | 0.264 | 0.264 | 1.3e-13 | |
| UNIPROTKB|E1BUN2 | 976 | EXOC4 "Uncharacterized protein | 0.471 | 0.263 | 0.269 | 1.6e-13 |
| TAIR|locus:2076249 SEC8 "subunit of exocyst complex 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 1.4e-207, Sum P(2) = 1.4e-207
Identities = 214/296 (72%), Positives = 245/296 (82%)
Query: 1 MDIFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNXX 60
M IF+GLP+ +K YLREELARI+ SW A RFDSLPHVVHILTSKDRE ++ ILK+Q+
Sbjct: 1 MGIFNGLPVPSDKTYLREELARIDESWAAARFDSLPHVVHILTSKDREADIHILKEQSDV 60
Query: 61 XXXXXXXXXHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ 120
HAYH GFNKAIQNYSQILRLFSES E I +LK DLAEAK+ LG RNKQLHQ
Sbjct: 61 VEEVVDEVVHAYHGGFNKAIQNYSQILRLFSESTEKIGDLKHDLAEAKQSLGARNKQLHQ 120
Query: 121 LWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVG 180
LWYRSVTLRHIISLLDQIEGIAKVP+RIEKLIA KQ+YAA+Q++ QS+LMLEREGLQTVG
Sbjct: 121 LWYRSVTLRHIISLLDQIEGIAKVPSRIEKLIADKQFYAAIQVYLQSSLMLEREGLQTVG 180
Query: 181 ALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNN 240
ALQDVRSELTKLRG LF+K+L+DLHAHLYNRGEYSS S++E DDEVPTT AVA + +
Sbjct: 181 ALQDVRSELTKLRGALFFKILDDLHAHLYNRGEYSSVASSIYERDDEVPTTTAVAASRMS 240
Query: 241 SQPLSRRTR-LKGDNQFGVHGLADGSH-------SSTFDGHDEDGSLEAHDETSLD 288
SQPLSRRTR LKGD+QFGV GL +GS+ SS+FDGHDE+ S+E HDE++ D
Sbjct: 241 SQPLSRRTRTLKGDSQFGVRGLTNGSYRTASNDESSSFDGHDEEDSVE-HDESTAD 295
|
|
| UNIPROTKB|D4A9S7 Exoc4 "Exocyst complex component 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SNF7 LOC100511293 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PED2 EXOC4 "Exocyst complex component 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q96A65 EXOC4 "Exocyst complex component 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6QLD1 EXOC4 "EXOC4 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| RGD|621791 Exoc4 "exocyst complex component 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q62824 Exoc4 "Exocyst complex component 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PMM8 EXOC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BUN2 EXOC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 545 | |||
| pfam04048 | 142 | pfam04048, Sec8_exocyst, Sec8 exocyst complex comp | 8e-43 |
| >gnl|CDD|202865 pfam04048, Sec8_exocyst, Sec8 exocyst complex component specific domain | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 8e-43
Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 15 YLREELARIEVSWVAPRFDSLPHVVHILTSKDREG-----EVQILKDQNDIIEEVVDEVV 69
L+E L I+ W D V L D + IE+ + EVV
Sbjct: 1 KLKEVLNTIKYEWPQVLSDDANPVELALQLLDDTSVGLAHRYPEFEQLKKRIEQALQEVV 60
Query: 70 HAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLR 129
+ +H GFN +I +Y +IL + S E I++LK L EAK+ LGTR +L +L RS +
Sbjct: 61 NEHHQGFNSSIGSYHKILSSITSSQERIRQLKESLEEAKKLLGTRKPELKELNQRSQKYK 120
Query: 130 HIISLLDQIEGIAKVPARIEKL 151
+I LLD IE + KVP ++E+L
Sbjct: 121 EMIELLDAIEELRKVPDKLEQL 142
|
Length = 142 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 545 | |||
| KOG3691 | 982 | consensus Exocyst complex subunit Sec8 [Intracellu | 100.0 | |
| PF04048 | 142 | Sec8_exocyst: Sec8 exocyst complex component speci | 100.0 | |
| PF10475 | 291 | DUF2450: Protein of unknown function N-terminal do | 99.73 | |
| KOG2115 | 951 | consensus Vacuolar sorting protein VPS45 [Intracel | 99.31 | |
| PF06248 | 593 | Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 | 98.14 | |
| PF15469 | 182 | Sec5: Exocyst complex component Sec5 | 98.08 | |
| PF04100 | 383 | Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 | 97.98 | |
| PF04124 | 338 | Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 | 97.78 | |
| KOG2176 | 800 | consensus Exocyst complex, subunit SEC15 [Intracel | 97.4 | |
| PF10392 | 132 | COG5: Golgi transport complex subunit 5; InterPro: | 97.18 | |
| PF06148 | 133 | COG2: COG (conserved oligomeric Golgi) complex com | 97.11 | |
| KOG2180 | 793 | consensus Late Golgi protein sorting complex, subu | 96.58 | |
| KOG2069 | 581 | consensus Golgi transport complex subunit [Intrace | 96.21 | |
| KOG2346 | 636 | consensus Uncharacterized conserved protein [Funct | 95.41 | |
| PF08700 | 87 | Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te | 94.3 | |
| PF10191 | 766 | COG7: Golgi complex component 7 (COG7); InterPro: | 93.84 | |
| KOG2307 | 705 | consensus Low density lipoprotein receptor [Intrac | 91.53 | |
| KOG0412 | 773 | consensus Golgi transport complex COD1 protein [In | 89.77 | |
| PF09763 | 701 | Sec3_C: Exocyst complex component Sec3; InterPro: | 89.54 | |
| KOG1961 | 683 | consensus Vacuolar sorting protein VPS52/suppresso | 85.68 |
| >KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=406.26 Aligned_cols=368 Identities=23% Similarity=0.248 Sum_probs=284.8
Q ss_pred HHHHHHHhHhhhCCCCCCchhHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009047 16 LREELARIEVSWVAPRFDSLPHVVHILTS--KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (545)
Q Consensus 16 l~evL~~I~~eW~~~~fd~l~~vl~lLss--~~~E~~~~~Le~~~~~l~~~L~~vV~eh~q~FN~sI~sy~~I~~~I~~S 93 (545)
..+...+|...|. .+.+. .+||.++++|++.++..+.+|+++|++|+|+|++.|.+|++|++.|+.|
T Consensus 26 sn~~G~lInvi~n-----------L~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~ 94 (982)
T KOG3691|consen 26 SNELGLLINVIRN-----------LVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNC 94 (982)
T ss_pred ccccchhhhHHHh-----------hccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666 33332 3899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhHHHHHHHHHHhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcc
Q 009047 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (545)
Q Consensus 94 q~~i~~lK~~L~~ak~~L~~r~~eL~~L~~~s~~~~~mL~iLd~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~ 173 (545)
|++|.+||++|.+||++|+|+|++|++||.++.+|++||++|++||+++++|++||.+|++|+|++|.++|.+++.++++
T Consensus 95 rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng 174 (982)
T KOG3691|consen 95 RERIHNVKNNLEACKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNG 174 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCccHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCCcccccccccccCCCCccchhcccccCCCCCccccccccCC
Q 009047 174 EGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGD 253 (545)
Q Consensus 174 ~eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh~~lYlK~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~q~~~~~t~~~~~ 253 (545)
+ |.+|..|+|||++|+.+++.|+++|+||||+++|.|+....-. + +-+.+ |++
T Consensus 175 ~-L~~VEgLs~l~~ele~~~~~L~~~L~eELv~ily~ks~~~~l~-~-~~~~~----------------~~~-------- 227 (982)
T KOG3691|consen 175 P-LDGVEGLSDLRSELEGLLSHLEDILIEELVSILYLKSVAYPLV-S-YCRTN----------------PLS-------- 227 (982)
T ss_pred c-chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHH-h-hhcCC----------------chh--------
Confidence 6 9999999999999999999999999999999999997531110 0 00111 111
Q ss_pred CCCCccccCCCCCCc-cCCCCCCCCCccccccccccccccccc-----cCC----Cch--HHHHHhhcC-CcchhHHHHH
Q 009047 254 NQFGVHGLADGSHSS-TFDGHDEDGSLEAHDETSLDGLSIGWL-----ANS----TPD--EFVEAIRKS-DAPLHVKYLQ 320 (545)
Q Consensus 254 ~q~~~~~~~~~~~sl-~~~~~~~~~~~~~~d~~~~s~~i~~fl-----s~~----~~~--~~~ed~~~n-~~~~sf~Yi~ 320 (545)
+.+ +|. ||.++.+....++.+-+-+ ++. +.+ ...+++.-. |++.+-.+..
T Consensus 228 ------------s~l~~~~-----~~~in~t~l~~sr~~~ea~~~k~~~g~~sv~~~~~~~~~~~l~~~~pe~~sslf~~ 290 (982)
T KOG3691|consen 228 ------------SRLNDFL-----YNNINTTTLGTSRQLLEALCHKSDAGSGSVRDIRIVLEKEDLLLSLPEANSSLFRR 290 (982)
T ss_pred ------------hHHHHHh-----hcccCccccCccHHHHHHHHHHhhcCCcchhhHHHHHhhccccccchhhHHHHHHH
Confidence 111 222 3444444333333331110 000 000 111222223 6667777888
Q ss_pred HHHHHHHhhCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcchhhhccccccCccccccccccccccccccccccCC
Q 009047 321 TMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNG 400 (545)
Q Consensus 321 ~llesL~~LgKL~~Al~~i~qRl~~Elh~lV~~ti~e~~~~~~~s~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 400 (545)
.+++.++++.|+|.++.+|..|+.+|++++|.+++..+....+..+ +..+ +
T Consensus 291 il~k~~~~~~k~p~~~n~i~~~~~~el~niv~kSt~~i~~~g~~~~---------------------------e~at-~- 341 (982)
T KOG3691|consen 291 ILEKFTTVDSKSPAIVNKISERINVELVNIVSKSTYDISLSGETDR---------------------------EHAT-F- 341 (982)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccchhhhccccchh---------------------------hhhh-c-
Confidence 9999999999999999999999999999999776665542222100 0000 0
Q ss_pred cccccccccccccccccCcCCchHHHHHHHHHHHHHHHHHHHhhhHHHHH------HHHHhhccCCCCCCcccccCCCCC
Q 009047 401 ISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGE------LLESRSSRHDINTPKSMIADANWN 474 (545)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~il~el~~slf~k~~avle~h~vv~e------v~~~~~~r~~~~~~~~~~~~~~~~ 474 (545)
+...-+|.++||-||.||.++.+.|+++.+ ++....++.
T Consensus 342 --------------------~tn~f~L~ell~~if~kf~a~aq~Ha~~~~~s~~~~vv~P~~sq~--------------- 386 (982)
T KOG3691|consen 342 --------------------DTNHFMLLELLEEIFTKFEAAAQKHASSLHKSLQNDVVSPKVSQK--------------- 386 (982)
T ss_pred --------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCC---------------
Confidence 112239999999999999999999999998 444443332
Q ss_pred CCCCcccccCcchhhhhHHHHHHHHHHHHHHhhcCc
Q 009047 475 PDSEASVTGGYSIGFSMTVLQSECQQLICEILRATP 510 (545)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~qsE~~~Ll~~yl~~~~ 510 (545)
..|.+..+|..+|+|++-|+-+||-..+
T Consensus 387 --------d~f~~~~~W~k~qs~ielllsE~i~~nn 414 (982)
T KOG3691|consen 387 --------DTFDFTDFWQKAQSEIELLLSEYIDNNN 414 (982)
T ss_pred --------CcccHHHHHHHHHHHHHHHHHHHhccCC
Confidence 1478899999999999999999996543
|
|
| >PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane | Back alignment and domain information |
|---|
| >PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known | Back alignment and domain information |
|---|
| >KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells | Back alignment and domain information |
|---|
| >PF15469 Sec5: Exocyst complex component Sec5 | Back alignment and domain information |
|---|
| >PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] | Back alignment and domain information |
|---|
| >PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] | Back alignment and domain information |
|---|
| >KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking | Back alignment and domain information |
|---|
| >PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex | Back alignment and domain information |
|---|
| >KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2346 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi | Back alignment and domain information |
|---|
| >PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] | Back alignment and domain information |
|---|
| >KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8 | Back alignment and domain information |
|---|
| >KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 545 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 1e-08
Identities = 77/595 (12%), Positives = 180/595 (30%), Gaps = 146/595 (24%)
Query: 3 IFDGLPISPEKAYLR--EELARIEVSWVAPRFD------SLPHVVHILTSKDR-EGEVQI 53
+F L E+ + EE+ RI ++ S+ ++I +DR + Q+
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQV 125
Query: 54 LKDQNDIIEEVVDE--------------VVHAYHTGFNKAIQNYSQILRLFSESAESIKE 99
N + + ++ G K + + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-LGSGK------TWV-----ALDVCLS 173
Query: 100 LKVDLAEAKR----RLGTRNK---QLHQLWYRSVTLRHII--SLLDQIEGIAKVPARIEK 150
KV + L N L L L + I + + + + + RI
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 151 LIAGKQYYAAVQLHAQSALMLEREGLQTVGALQ--DVRSEL---TKLRGVL--------F 197
+ A + + + L+L +Q A ++ ++ T+ + V
Sbjct: 230 IQAELRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 198 YKVLEDLHAHLYNRGEYSSAVLS--MHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQ 255
+ L+ L + ++L + ++P TTN P
Sbjct: 288 HISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLP---REVLTTN---PRR---------- 329
Query: 256 FGVHGLADGSHSSTFDG--HDEDGSLEAHDETSLDGLSIGWLANSTPDEFVE-----AIR 308
+ + +T+D H L E+SL+ L P E+ + ++
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--------PAEYRKMFDRLSVF 381
Query: 309 KSDAPLHVKYLQTM------VECLCILGKVAAAGAIICQRLRPT--IHEI-------ITS 353
A + L + + + ++ K+ + Q T I I + +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 354 KIKAHAQLINSSRSAIGQAAQTGTTGLHFMKG---QLRSYQLPKQKRQNGISL-SGTLLA 409
+ H +++ I + + ++ + L + ++L L
Sbjct: 442 EYALHRSIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 410 VSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIA 469
+ + A A+ +L+++ ++ ++ ++ +D + ++
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQ--LKFYKPYI----------CDND-PKYERLVN 546
Query: 470 D-ANWNPDSEASVTGGYSIGFSMTVLQSECQQLICEILRATPEAASADAAVQTAR 523
++ P E + ++ S+ L+ L A EA +A Q R
Sbjct: 547 AILDFLPKIEEN------------LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 545 | |||
| 2d2s_A | 235 | Exocyst complex component EXO84; tethering complex | 94.47 |
| >2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.085 Score=51.84 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=57.7
Q ss_pred HhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHcccCC----CCcCccHHHHHHHHHhHHHHHHHHHHHHH
Q 009047 136 DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGL----QTVGALQDVRSELTKLRGVLFYKVLEDLH 205 (545)
Q Consensus 136 d~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~eL----~~I~AL~dLR~~L~~qe~~L~d~LiEELh 205 (545)
+.+..+...|+.|+-+|++++|.+|++++.++-..+.+-.- .+..++..++..+.+++..|.+.|++||.
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~ 86 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL 86 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778999999999999999999999999998865221 12456778999999999999999999983
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 545 | |||
| d2d2sa1 | 229 | Exocyst complex component EXO84 {Baker's yeast (Sa | 91.18 |
| >d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cullin repeat-like family: Exocyst complex component domain: Exocyst complex component EXO84 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.18 E-value=0.25 Score=45.71 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=51.4
Q ss_pred HhHHHhhccHHHHHHHHhccCHHHHHHHHHHHHHHHccc----CCCCcCccHHHHHHHHHhHHHHHHHHHHHHH
Q 009047 136 DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE----GLQTVGALQDVRSELTKLRGVLFYKVLEDLH 205 (545)
Q Consensus 136 d~Ie~L~~vP~kIe~lIseK~yl~Av~LL~~s~~ll~~~----eL~~I~AL~dLR~~L~~qe~~L~d~LiEELh 205 (545)
..|+.|...|+.++..|++++|.+|++++..+-..+.+- ....+..+..++..+.+.+..|.+.|..+|.
T Consensus 7 ~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~ 80 (229)
T d2d2sa1 7 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL 80 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788899999999999999999999998877766542 1223334455777777877777777766663
|